Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143530 | XP_039683423.1 | 97.864 | 515 | 11 | 0 | 1 | 515 | 1 | 515 | 0.0 | 1048 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143530 | sp|Q5RB07|WDR6_PONAB | 25.207 | 484 | 282 | 13 | 39 | 504 | 31 | 452 | 1.55e-27 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143530 | G7KTS0 | 97.864 | 515 | 11 | 0 | 1 | 515 | 1 | 515 | 0.0 | 1048 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143530 | Msa0253200 | 0.802573 | 5.261657e-49 | -8.615850e-47 |
| Msa0143530 | Msa0292030 | 0.807023 | 6.187648e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143530 | MtrunA17_Chr7g0270511 | 97.864 | 515 | 11 | 0 | 1 | 515 | 1 | 515 | 0.0 | 1048 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0143530 | AT4G01860.2 | 51.692 | 532 | 215 | 7 | 1 | 515 | 1 | 507 | 0.0 | 543 |
| Msa0143530 | AT4G01860.1 | 51.692 | 532 | 215 | 7 | 1 | 515 | 1 | 507 | 0.0 | 543 |
Find 136 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATTGCCCTTGTCTTATT+TGG | 0.100506 | 1_4:+2463178 | Msa0143530:CDS |
| CCAATATGCTCCAACATATT+AGG | 0.144819 | 1_4:-2464886 | None:intergenic |
| TCGTTTGAAAATGACGATTT+TGG | 0.148649 | 1_4:+2461614 | Msa0143530:CDS |
| TTGTTGTACGACTTAGAATT+TGG | 0.179799 | 1_4:+2461476 | Msa0143530:CDS |
| TACTTATTGGTGCAAATCTT+TGG | 0.221795 | 1_4:+2465396 | Msa0143530:CDS |
| GTTATAAGAAGTGACAAATT+TGG | 0.231727 | 1_4:-2464751 | None:intergenic |
| CCCTGACGGTCATGGTCTTC+TGG | 0.241127 | 1_4:-2462876 | None:intergenic |
| GGCAGCTATTGGGTACTTAT+TGG | 0.258579 | 1_4:+2465383 | Msa0143530:CDS |
| AGGATTGTACATGTCGTATA+TGG | 0.266171 | 1_4:+2464080 | Msa0143530:CDS |
| CCTAATATGTTGGAGCATAT+TGG | 0.267421 | 1_4:+2464886 | Msa0143530:CDS |
| GGAAAACATCTCTGTTCTTC+CGG | 0.284169 | 1_4:-2464854 | None:intergenic |
| TTTGTACTCAATGCGGTTAT+GGG | 0.298417 | 1_4:+2462295 | Msa0143530:CDS |
| AGAAAAGAGTGAAAATATTT+CGG | 0.301484 | 1_4:+2461588 | Msa0143530:CDS |
| CAAGTTTGGTCATTGGGTTT+TGG | 0.308075 | 1_4:+2461670 | Msa0143530:CDS |
| TTCTTGTCTGTCCAGGGGTT+TGG | 0.308522 | 1_4:+2464813 | Msa0143530:CDS |
| CAATTCTAATGCGGTTCTTA+AGG | 0.317103 | 1_4:+2462152 | Msa0143530:CDS |
| TGTACAGAGGTAGGGGTATA+TGG | 0.319865 | 1_4:+2464713 | Msa0143530:intron |
| CTTAAGAACCGCATTAGAAT+TGG | 0.322600 | 1_4:-2462151 | None:intergenic |
| TAGAAGAGGAAGAGAATGAT+TGG | 0.327934 | 1_4:-2461344 | None:intergenic |
| ATCCATTTGTTGCCCAAGTT+TGG | 0.327994 | 1_4:+2461656 | Msa0143530:CDS |
| CTTTACTTGGCAAGCTGAAA+TGG | 0.338289 | 1_4:+2465357 | Msa0143530:CDS |
| CAATATGCTCCAACATATTA+GGG | 0.340653 | 1_4:-2464885 | None:intergenic |
| ACTTATTGGTGCAAATCTTT+GGG | 0.348034 | 1_4:+2465397 | Msa0143530:CDS |
| TTGGACATAATGCTCGAGTT+TGG | 0.357372 | 1_4:+2463197 | Msa0143530:CDS |
| TGTTGCCCAAGTTTGGTCAT+TGG | 0.359027 | 1_4:+2461663 | Msa0143530:CDS |
| CAAAACCCAATGACCAAACT+TGG | 0.360015 | 1_4:-2461669 | None:intergenic |
| TTATAAGAAGTGACAAATTT+GGG | 0.361733 | 1_4:-2464750 | None:intergenic |
| TATAATGCAGCGCACGTGTA+TGG | 0.367463 | 1_4:+2463116 | Msa0143530:intron |
| GTTGCCCAAGTTTGGTCATT+GGG | 0.367580 | 1_4:+2461664 | Msa0143530:CDS |
| TGAAATGGAGAGGCAGCTAT+TGG | 0.370891 | 1_4:+2465372 | Msa0143530:CDS |
| TGGACATAATGCTCGAGTTT+GGG | 0.372601 | 1_4:+2463198 | Msa0143530:CDS |
| TTGTCACTTCTTATAACTGC+TGG | 0.373209 | 1_4:+2464757 | Msa0143530:CDS |
| GTGACAATTCAGTTTGCATA+TGG | 0.378615 | 1_4:+2462121 | Msa0143530:CDS |
| GAAAACATCTCTGTTCTTCC+GGG | 0.382830 | 1_4:-2464853 | None:intergenic |
| AGCTTGTCCAGGTCAGCAAC+GGG | 0.388945 | 1_4:+2465185 | Msa0143530:CDS |
| GGCCTCATTCTTGTCTGTCC+AGG | 0.392682 | 1_4:+2464806 | Msa0143530:CDS |
| CAGTTAGATTGAGCTTTACT+TGG | 0.408055 | 1_4:+2465344 | Msa0143530:CDS |
| CACAAGACGACCATGCTATT+CGG | 0.423946 | 1_4:-2462980 | None:intergenic |
| GGTGCAAATCTTTGGGATCC+AGG | 0.425798 | 1_4:+2465404 | Msa0143530:CDS |
| TCCAGAAGACCATGACCGTC+AGG | 0.427053 | 1_4:+2462875 | Msa0143530:CDS |
| GACCAAACTTGGGCAACAAA+TGG | 0.431698 | 1_4:-2461658 | None:intergenic |
| GCCTCATTCTTGTCTGTCCA+GGG | 0.433589 | 1_4:+2464807 | Msa0143530:CDS |
| TGTTGTACGACTTAGAATTT+GGG | 0.439872 | 1_4:+2461477 | Msa0143530:CDS |
| CCAAATAAGACAAGGGCAAT+GGG | 0.449054 | 1_4:-2463178 | None:intergenic |
| TGGGTTTGACTCTGCTATCA+AGG | 0.450391 | 1_4:+2464777 | Msa0143530:CDS |
| CATTTGCATCCCTAATATGT+TGG | 0.451689 | 1_4:+2464876 | Msa0143530:CDS |
| TTGAAGATTTATCATGTTGA+GGG | 0.452264 | 1_4:-2462848 | None:intergenic |
| GGTTTCTATGTACAGAGGTA+GGG | 0.462531 | 1_4:+2464705 | Msa0143530:intron |
| AGCATATTGGATTGACAGAC+AGG | 0.465252 | 1_4:+2464899 | Msa0143530:CDS |
| GAAGTTCTCCGTATTGCATC+CGG | 0.466361 | 1_4:+2462329 | Msa0143530:CDS |
| TCCTTGTTCAAATGAGTCCT+TGG | 0.468117 | 1_4:-2465236 | None:intergenic |
| CAACATATTAGGGATGCAAA+TGG | 0.469506 | 1_4:-2464875 | None:intergenic |
| GGATTGTACATGTCGTATAT+GGG | 0.480492 | 1_4:+2464081 | Msa0143530:CDS |
| TTCGATGGAATTCGTGTGCA+CGG | 0.482977 | 1_4:+2461524 | Msa0143530:CDS |
| GGTTCGGGCAGATTGTCGTT+TGG | 0.483519 | 1_4:+2462817 | Msa0143530:intron |
| TTTGTGCCCCGTTGCTGACC+TGG | 0.483665 | 1_4:-2465192 | None:intergenic |
| AAGGATGTGGTGATGAGGAT+TGG | 0.483965 | 1_4:+2465254 | Msa0143530:CDS |
| TCCAAATAAGACAAGGGCAA+TGG | 0.484915 | 1_4:-2463179 | None:intergenic |
| AGAAGAGGAAGAGAATGATT+GGG | 0.485818 | 1_4:-2461343 | None:intergenic |
| GAATCTGTGATTGTAGTGTT+TGG | 0.486217 | 1_4:+2461563 | Msa0143530:CDS |
| ACTAAAAGATAATATGTATG+AGG | 0.488763 | 1_4:+2462914 | Msa0143530:CDS |
| CTGCATGGATTTATTGTCCA+AGG | 0.489582 | 1_4:+2465219 | Msa0143530:CDS |
| CTGCATCGTGGCCCTTACCT+TGG | 0.493851 | 1_4:+2461289 | Msa0143530:CDS |
| TTTGGATGTTTGCTTCCTCA+AGG | 0.494996 | 1_4:+2461688 | Msa0143530:CDS |
| TTGTGCTGCTGCCAAACCCC+TGG | 0.495622 | 1_4:-2464824 | None:intergenic |
| GTTGAAGATTTATCATGTTG+AGG | 0.501233 | 1_4:-2462849 | None:intergenic |
| CTGTTTACCTTGTTCGAATG+TGG | 0.501936 | 1_4:+2462071 | Msa0143530:CDS |
| GAAATGGAGAGGCAGCTATT+GGG | 0.503374 | 1_4:+2465373 | Msa0143530:CDS |
| CATGCTAAATTATGTGAGGC+TGG | 0.503543 | 1_4:+2465145 | Msa0143530:CDS |
| TGTCACTTCTTATAACTGCT+GGG | 0.507649 | 1_4:+2464758 | Msa0143530:CDS |
| TGACAATTCAGTTTGCATAT+GGG | 0.507831 | 1_4:+2462122 | Msa0143530:CDS |
| AATTAGATCCCTGACGGTCA+TGG | 0.510236 | 1_4:-2462884 | None:intergenic |
| CGAATAGCATGGTCGTCTTG+TGG | 0.513606 | 1_4:+2462981 | Msa0143530:CDS |
| TACCTCGTTAAATATTGTAC+CGG | 0.522245 | 1_4:-2462348 | None:intergenic |
| GTTCTTAAGGTTCAATCACC+AGG | 0.524576 | 1_4:+2462165 | Msa0143530:CDS |
| GCTGAGATGTCGCCAAGGTA+AGG | 0.525788 | 1_4:-2461301 | None:intergenic |
| TCTCTTCCTCTTCTACTAGC+CGG | 0.528385 | 1_4:+2461352 | Msa0143530:CDS |
| ATGGTAGAGATAACCGTGAT+TGG | 0.531318 | 1_4:-2465125 | None:intergenic |
| TGTCGTATATGGGGAATTGA+TGG | 0.531459 | 1_4:+2464091 | Msa0143530:CDS |
| GATGAGGATTGGATTGCCAT+TGG | 0.532080 | 1_4:+2465265 | Msa0143530:CDS |
| ATTTCCTTTACCATCTCCAA+TGG | 0.532395 | 1_4:-2465281 | None:intergenic |
| CTGAGATGTCGCCAAGGTAA+GGG | 0.539241 | 1_4:-2461300 | None:intergenic |
| AGATAAGGCAATTCATTACC+TGG | 0.546012 | 1_4:-2465422 | None:intergenic |
| GTTTCTATGTACAGAGGTAG+GGG | 0.547064 | 1_4:+2464706 | Msa0143530:intron |
| GTAAAGCTCAATCTAACTGT+AGG | 0.548252 | 1_4:-2465340 | None:intergenic |
| TGTAAACTTGTGGGACATGA+AGG | 0.549276 | 1_4:+2462948 | Msa0143530:CDS |
| ATAATGCAGCGCACGTGTAT+GGG | 0.549545 | 1_4:+2463117 | Msa0143530:intron |
| ATAACCGCATTGAGTACAAA+AGG | 0.551306 | 1_4:-2462292 | None:intergenic |
| TATGGGCTGTTCCTACTGAA+AGG | 0.555653 | 1_4:+2463134 | Msa0143530:CDS |
| ATTGCCATTGGAGATGGTAA+AGG | 0.555729 | 1_4:+2465277 | Msa0143530:CDS |
| CAGCTTGTCCAGGTCAGCAA+CGG | 0.556780 | 1_4:+2465184 | Msa0143530:CDS |
| GAGATACCGGCTAGTAGAAG+AGG | 0.562507 | 1_4:-2461358 | None:intergenic |
| TCGATGGAATTCGTGTGCAC+GGG | 0.565107 | 1_4:+2461525 | Msa0143530:CDS |
| GATTGGATTGCCATTGGAGA+TGG | 0.572582 | 1_4:+2465271 | Msa0143530:CDS |
| ATGGGCTGTTCCTACTGAAA+GGG | 0.574449 | 1_4:+2463135 | Msa0143530:CDS |
| TTGTACTCAATGCGGTTATG+GGG | 0.574700 | 1_4:+2462296 | Msa0143530:CDS |
| CCTCATTCTTGTCTGTCCAG+GGG | 0.574704 | 1_4:+2464808 | Msa0143530:CDS |
| AATGAATCTTCCCTTTCAGT+AGG | 0.577095 | 1_4:-2463145 | None:intergenic |
| TGTTCACGTATGTAAACTTG+TGG | 0.583300 | 1_4:+2462938 | Msa0143530:CDS |
| GACTCATTTGAACAAGGATG+TGG | 0.583582 | 1_4:+2465241 | Msa0143530:CDS |
| ATATTGTACCGGATGCAATA+CGG | 0.584036 | 1_4:-2462337 | None:intergenic |
| CGGGGCACAAATTATCTGCA+TGG | 0.584827 | 1_4:+2465204 | Msa0143530:CDS |
| TCGTTGGAATCAGCTTGTCC+AGG | 0.585986 | 1_4:+2465174 | Msa0143530:CDS |
| GCAGCAGCACAATTATCCCC+CGG | 0.586399 | 1_4:+2464835 | Msa0143530:CDS |
| GTTCACGTATGTAAACTTGT+GGG | 0.587882 | 1_4:+2462939 | Msa0143530:CDS |
| TGTCTGTTTCTGATGACCGT+AGG | 0.588107 | 1_4:+2463015 | Msa0143530:CDS |
| GTGAGGCTGGAGGTGCTCGT+TGG | 0.598740 | 1_4:+2465158 | Msa0143530:CDS |
| ACTCTGCTATCAAGGTGCAT+AGG | 0.608278 | 1_4:+2464785 | Msa0143530:CDS |
| TGAAGATTTATCATGTTGAG+GGG | 0.612802 | 1_4:-2462847 | None:intergenic |
| AGCTGCAATTAGATCCCTGA+CGG | 0.612832 | 1_4:-2462890 | None:intergenic |
| AAAACCCAATGACCAAACTT+GGG | 0.613032 | 1_4:-2461668 | None:intergenic |
| AAGACCGACGCTTAATCGAA+TGG | 0.614837 | 1_4:+2461263 | Msa0143530:CDS |
| CATTATGTCCAAATAAGACA+AGG | 0.617509 | 1_4:-2463186 | None:intergenic |
| AAAACATCTCTGTTCTTCCG+GGG | 0.617720 | 1_4:-2464852 | None:intergenic |
| TCCAAGGACTCATTTGAACA+AGG | 0.618385 | 1_4:+2465235 | Msa0143530:CDS |
| GATTGTACATGTCGTATATG+GGG | 0.618528 | 1_4:+2464082 | Msa0143530:CDS |
| GGACATTTCCAATTCTAATG+CGG | 0.620070 | 1_4:+2462143 | Msa0143530:CDS |
| CTTGGCAAGCTGAAATGGAG+AGG | 0.623202 | 1_4:+2465362 | Msa0143530:CDS |
| AAATGGATCAATGTTAACTG+TGG | 0.624822 | 1_4:-2461641 | None:intergenic |
| AGAGAGCTGAGATGTCGCCA+AGG | 0.629859 | 1_4:-2461306 | None:intergenic |
| TCACTCTCCACATTCGAACA+AGG | 0.630421 | 1_4:-2462078 | None:intergenic |
| CTACCATGCTAAATTATGTG+AGG | 0.633890 | 1_4:+2465141 | Msa0143530:CDS |
| CAGCCTCACATAATTTAGCA+TGG | 0.634362 | 1_4:-2465144 | None:intergenic |
| TGAACAAGGATGTGGTGATG+AGG | 0.639310 | 1_4:+2465249 | Msa0143530:CDS |
| CCCCTGGACAGACAAGAATG+AGG | 0.640294 | 1_4:-2464808 | None:intergenic |
| AAAAGAAGCAGCAATGGCGA+CGG | 0.640852 | 1_4:+2461237 | Msa0143530:exon |
| CCAGAAGACCATGACCGTCA+GGG | 0.652135 | 1_4:+2462876 | Msa0143530:CDS |
| AAACATCTCTGTTCTTCCGG+GGG | 0.652252 | 1_4:-2464851 | None:intergenic |
| GTTTATTGTCACTGTCAGTG+AGG | 0.653378 | 1_4:+2464060 | Msa0143530:intron |
| GACGCCATTCGATTAAGCGT+CGG | 0.656410 | 1_4:-2461267 | None:intergenic |
| GTTCAATCTTCCGAATAGCA+TGG | 0.658501 | 1_4:+2462970 | Msa0143530:CDS |
| ATTATGTCCAAATAAGACAA+GGG | 0.668847 | 1_4:-2463185 | None:intergenic |
| ATCGAATGGCGTCTGCATCG+TGG | 0.680293 | 1_4:+2461277 | Msa0143530:CDS |
| ATCCGGTACAATATTTAACG+AGG | 0.691138 | 1_4:+2462346 | Msa0143530:CDS |
| GCTTGTCCAGGTCAGCAACG+GGG | 0.712622 | 1_4:+2465186 | Msa0143530:CDS |
| GCTAAATTATGTGAGGCTGG+AGG | 0.783887 | 1_4:+2465148 | Msa0143530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGACAACAATTTTAAA+TGG | - | chr1_4:2461943-2461962 | None:intergenic | 15.0% |
| !! | TAAAGTAATTAAACGAAAAT+CGG | - | chr1_4:2462789-2462808 | None:intergenic | 15.0% |
| !!! | TTTAATTACTTTAAAGAGTT+TGG | + | chr1_4:2462796-2462815 | Msa0143530:intron | 15.0% |
| !! | CACAAAAAATAATTAGAAAA+GGG | - | chr1_4:2464038-2464057 | None:intergenic | 15.0% |
| !! | ATATCATTTCTTAATGTTAT+TGG | + | chr1_4:2464403-2464422 | Msa0143530:intron | 15.0% |
| !!! | TTCATTTGCTTCATAATTTT+AGG | + | chr1_4:2461437-2461456 | Msa0143530:intron | 20.0% |
| !!! | GAAGATAATGAAATCTTTTT+CGG | + | chr1_4:2461499-2461518 | Msa0143530:CDS | 20.0% |
| !! | AGAAAAGAGTGAAAATATTT+CGG | + | chr1_4:2461588-2461607 | Msa0143530:CDS | 20.0% |
| !! | GTCAAAATAAGAGAATAATT+TGG | + | chr1_4:2461750-2461769 | Msa0143530:intron | 20.0% |
| !! | AATACATGTTTAGTTACATT+CGG | + | chr1_4:2461790-2461809 | Msa0143530:intron | 20.0% |
| !!! | ATCAGAAAGAAATTTTTACA+AGG | - | chr1_4:2462743-2462762 | None:intergenic | 20.0% |
| !! | ACTAAAAGATAATATGTATG+AGG | + | chr1_4:2462914-2462933 | Msa0143530:CDS | 20.0% |
| !! | TATGTGATAATTGATACAAT+AGG | - | chr1_4:2463059-2463078 | None:intergenic | 20.0% |
| !!! | ACATCAGAAACTATTTTTTT+AGG | - | chr1_4:2463280-2463299 | None:intergenic | 20.0% |
| !! | GATAATTAGCATTAAAAATC+TGG | - | chr1_4:2463479-2463498 | None:intergenic | 20.0% |
| !!! | ATCAATTATTTTCTTTTCAC+CGG | + | chr1_4:2463691-2463710 | Msa0143530:intron | 20.0% |
| !! | TAAATTCGTTCTTCAAAATA+TGG | + | chr1_4:2463821-2463840 | Msa0143530:intron | 20.0% |
| !! | TATATTATACACTGAAATTG+TGG | - | chr1_4:2463896-2463915 | None:intergenic | 20.0% |
| !! | GCACAAAAAATAATTAGAAA+AGG | - | chr1_4:2464039-2464058 | None:intergenic | 20.0% |
| !!! | AAATGATATATTTTTGAGTC+AGG | - | chr1_4:2464392-2464411 | None:intergenic | 20.0% |
| !! | TATATCTTCTAATTATTGTG+TGG | + | chr1_4:2464577-2464596 | Msa0143530:intron | 20.0% |
| !!! | CTTTTTAATGAAATGTGTAT+TGG | + | chr1_4:2464684-2464703 | Msa0143530:intron | 20.0% |
| !! | TTATAAGAAGTGACAAATTT+GGG | - | chr1_4:2464753-2464772 | None:intergenic | 20.0% |
| !! | AAAAAGTTTGTAATGTTACA+GGG | - | chr1_4:2464960-2464979 | None:intergenic | 20.0% |
| !! | TAAAAAGTTTGTAATGTTAC+AGG | - | chr1_4:2464961-2464980 | None:intergenic | 20.0% |
| !!! | TTGCTTCATAATTTTAGGTT+TGG | + | chr1_4:2461442-2461461 | Msa0143530:intron | 25.0% |
| !!! | TGCTTCATAATTTTAGGTTT+GGG | + | chr1_4:2461443-2461462 | Msa0143530:intron | 25.0% |
| ! | TGCTTACGATTAATTACATT+CGG | + | chr1_4:2461826-2461845 | Msa0143530:intron | 25.0% |
| !! | TTAGTTTCAATTTTACTGCA+TGG | + | chr1_4:2462188-2462207 | Msa0143530:intron | 25.0% |
| ! | AATGAGTAACTATTTGTCAT+TGG | + | chr1_4:2462250-2462269 | Msa0143530:intron | 25.0% |
| ! | GTTAATCACAATTATCATCT+TGG | + | chr1_4:2462533-2462552 | Msa0143530:intron | 25.0% |
| ! | TGATTATACGTAGAAACTAA+AGG | - | chr1_4:2462690-2462709 | None:intergenic | 25.0% |
| !! | TTACTTTAAAGAGTTTGGTT+CGG | + | chr1_4:2462801-2462820 | Msa0143530:intron | 25.0% |
| ! | TTGAAGATTTATCATGTTGA+GGG | - | chr1_4:2462851-2462870 | None:intergenic | 25.0% |
| ! | CTGCATTATAAAAGTTATCA+TGG | - | chr1_4:2463106-2463125 | None:intergenic | 25.0% |
| ! | ATTATGTCCAAATAAGACAA+GGG | - | chr1_4:2463188-2463207 | None:intergenic | 25.0% |
| ! | TTTCATAAGCATGAAATGAA+TGG | - | chr1_4:2463249-2463268 | None:intergenic | 25.0% |
| !!! | ATGATTTACCCATTTTTGTT+GGG | - | chr1_4:2463357-2463376 | None:intergenic | 25.0% |
| !!! | AATGATTTACCCATTTTTGT+TGG | - | chr1_4:2463358-2463377 | None:intergenic | 25.0% |
| ! | ATTGGCTATAATTTATTGTC+TGG | + | chr1_4:2464232-2464251 | Msa0143530:intron | 25.0% |
| ! | ATCATCTTTAACATTCAGAA+AGG | - | chr1_4:2464506-2464525 | None:intergenic | 25.0% |
| ! | GTTATAAGAAGTGACAAATT+TGG | - | chr1_4:2464754-2464773 | None:intergenic | 25.0% |
| !! | TAAATTTGATTAGCTCACTT+TGG | + | chr1_4:2464931-2464950 | Msa0143530:intron | 25.0% |
| !!! | CATAATTTTAGGTTTGGGTT+CGG | + | chr1_4:2461448-2461467 | Msa0143530:intron | 30.0% |
| TTGTTGTACGACTTAGAATT+TGG | + | chr1_4:2461476-2461495 | Msa0143530:CDS | 30.0% | |
| TGTTGTACGACTTAGAATTT+GGG | + | chr1_4:2461477-2461496 | Msa0143530:CDS | 30.0% | |
| !!! | AAATCTTTTTCGGTTTTCGA+TGG | + | chr1_4:2461509-2461528 | Msa0143530:CDS | 30.0% |
| ! | TCGTTTGAAAATGACGATTT+TGG | + | chr1_4:2461614-2461633 | Msa0143530:CDS | 30.0% |
| ! | CGTTTGAAAATGACGATTTT+GGG | + | chr1_4:2461615-2461634 | Msa0143530:CDS | 30.0% |
| AAATGGATCAATGTTAACTG+TGG | - | chr1_4:2461644-2461663 | None:intergenic | 30.0% | |
| AGTGAATATTATTCACCTTG+AGG | - | chr1_4:2461706-2461725 | None:intergenic | 30.0% | |
| TGACAATTCAGTTTGCATAT+GGG | + | chr1_4:2462122-2462141 | Msa0143530:CDS | 30.0% | |
| CAGTAAAATTGAAACTAACC+TGG | - | chr1_4:2462186-2462205 | None:intergenic | 30.0% | |
| AGTAACTATTTGTCATTGGA+TGG | + | chr1_4:2462254-2462273 | Msa0143530:intron | 30.0% | |
| GTAACTATTTGTCATTGGAT+GGG | + | chr1_4:2462255-2462274 | Msa0143530:intron | 30.0% | |
| TACCTCGTTAAATATTGTAC+CGG | - | chr1_4:2462351-2462370 | None:intergenic | 30.0% | |
| GTACAATATTTAACGAGGTA+AGG | + | chr1_4:2462351-2462370 | Msa0143530:intron | 30.0% | |
| GGAAGTCAAAAATTATTCTG+GGG | - | chr1_4:2462469-2462488 | None:intergenic | 30.0% | |
| CGGAAGTCAAAAATTATTCT+GGG | - | chr1_4:2462470-2462489 | None:intergenic | 30.0% | |
| !!! | TGAAGTGTGGTTTTAAAAGT+CGG | - | chr1_4:2462493-2462512 | None:intergenic | 30.0% |
| AATCACAATTATCATCTTGG+TGG | + | chr1_4:2462536-2462555 | Msa0143530:intron | 30.0% | |
| AATGCATGAACTTAAACAGA+GGG | - | chr1_4:2462618-2462637 | None:intergenic | 30.0% | |
| TAATGCATGAACTTAAACAG+AGG | - | chr1_4:2462619-2462638 | None:intergenic | 30.0% | |
| ! | CTGTTTAAGTTCATGCATTA+AGG | + | chr1_4:2462619-2462638 | Msa0143530:intron | 30.0% |
| ! | AGAAACTAAAGGTAGAGTTT+TGG | - | chr1_4:2462679-2462698 | None:intergenic | 30.0% |
| GTAATTAAACGAAAATCGGA+AGG | - | chr1_4:2462785-2462804 | None:intergenic | 30.0% | |
| ! | TACTTTAAAGAGTTTGGTTC+GGG | + | chr1_4:2462802-2462821 | Msa0143530:intron | 30.0% |
| TGAAGATTTATCATGTTGAG+GGG | - | chr1_4:2462850-2462869 | None:intergenic | 30.0% | |
| GTTGAAGATTTATCATGTTG+AGG | - | chr1_4:2462852-2462871 | None:intergenic | 30.0% | |
| TTGAAAATCTAACTCACCTA+CGG | - | chr1_4:2463034-2463053 | None:intergenic | 30.0% | |
| CATTATGTCCAAATAAGACA+AGG | - | chr1_4:2463189-2463208 | None:intergenic | 30.0% | |
| ! | TTTTACCACCCAACAAAAAT+GGG | + | chr1_4:2463346-2463365 | Msa0143530:intron | 30.0% |
| TAGCATTAAAAATCTGGTCT+TGG | - | chr1_4:2463473-2463492 | None:intergenic | 30.0% | |
| ATGCTAATTATCTCCCTTAT+TGG | + | chr1_4:2463487-2463506 | Msa0143530:intron | 30.0% | |
| ATGTGAAGACTATAAACTAC+CGG | - | chr1_4:2463713-2463732 | None:intergenic | 30.0% | |
| ATATGTTATCTTGAGTCTCT+TGG | + | chr1_4:2464312-2464331 | Msa0143530:intron | 30.0% | |
| !! | TTTTGAGTCAGGTCTTTTAA+GGG | - | chr1_4:2464381-2464400 | None:intergenic | 30.0% |
| !!! | TTTTTGAGTCAGGTCTTTTA+AGG | - | chr1_4:2464382-2464401 | None:intergenic | 30.0% |
| CAATATGCTCCAACATATTA+GGG | - | chr1_4:2464888-2464907 | None:intergenic | 30.0% | |
| ! | AACACAACTGACTTAGATAA+TGG | - | chr1_4:2464999-2465018 | None:intergenic | 30.0% |
| TACTTATTGGTGCAAATCTT+TGG | + | chr1_4:2465396-2465415 | Msa0143530:CDS | 30.0% | |
| ACTTATTGGTGCAAATCTTT+GGG | + | chr1_4:2465397-2465416 | Msa0143530:CDS | 30.0% | |
| AAGTGAAAAAGAAGCAGCAA+TGG | + | chr1_4:2461231-2461250 | Msa0143530:exon | 35.0% | |
| AGAAGAGGAAGAGAATGATT+GGG | - | chr1_4:2461346-2461365 | None:intergenic | 35.0% | |
| TAGAAGAGGAAGAGAATGAT+TGG | - | chr1_4:2461347-2461366 | None:intergenic | 35.0% | |
| AGTAGAAGAAAACGAGATAC+CGG | - | chr1_4:2461374-2461393 | None:intergenic | 35.0% | |
| GAATCTGTGATTGTAGTGTT+TGG | + | chr1_4:2461563-2461582 | Msa0143530:CDS | 35.0% | |
| AAAACCCAATGACCAAACTT+GGG | - | chr1_4:2461671-2461690 | None:intergenic | 35.0% | |
| !!! | CTTATTTTGACAGCTCATAC+AGG | - | chr1_4:2461741-2461760 | None:intergenic | 35.0% |
| ACATGTTTAGTTACATTCGG+TGG | + | chr1_4:2461793-2461812 | Msa0143530:intron | 35.0% | |
| !! | GAGAGTGATTTTCTTGCTAT+AGG | + | chr1_4:2462093-2462112 | Msa0143530:CDS | 35.0% |
| GTGACAATTCAGTTTGCATA+TGG | + | chr1_4:2462121-2462140 | Msa0143530:CDS | 35.0% | |
| GGACATTTCCAATTCTAATG+CGG | + | chr1_4:2462143-2462162 | Msa0143530:CDS | 35.0% | |
| CTTAAGAACCGCATTAGAAT+TGG | - | chr1_4:2462154-2462173 | None:intergenic | 35.0% | |
| CAATTCTAATGCGGTTCTTA+AGG | + | chr1_4:2462152-2462171 | Msa0143530:CDS | 35.0% | |
| ! | TCAATTTTACTGCATGGCAT+TGG | + | chr1_4:2462194-2462213 | Msa0143530:intron | 35.0% |
| ATAACCGCATTGAGTACAAA+AGG | - | chr1_4:2462295-2462314 | None:intergenic | 35.0% | |
| ! | TTTTGTACTCAATGCGGTTA+TGG | + | chr1_4:2462294-2462313 | Msa0143530:CDS | 35.0% |
| TTTGTACTCAATGCGGTTAT+GGG | + | chr1_4:2462295-2462314 | Msa0143530:CDS | 35.0% | |
| ATATTGTACCGGATGCAATA+CGG | - | chr1_4:2462340-2462359 | None:intergenic | 35.0% | |
| ATCCGGTACAATATTTAACG+AGG | + | chr1_4:2462346-2462365 | Msa0143530:CDS | 35.0% | |
| GCGGAAGTCAAAAATTATTC+TGG | - | chr1_4:2462471-2462490 | None:intergenic | 35.0% | |
| !! | GCTTTAGTATTTCTGAAGTG+TGG | - | chr1_4:2462506-2462525 | None:intergenic | 35.0% |
| ATGCATGAACTTAAACAGAG+GGG | - | chr1_4:2462617-2462636 | None:intergenic | 35.0% | |
| ATTAAACGAAAATCGGAAGG+TGG | - | chr1_4:2462782-2462801 | None:intergenic | 35.0% | |
| TGTTCACGTATGTAAACTTG+TGG | + | chr1_4:2462938-2462957 | Msa0143530:CDS | 35.0% | |
| GTTCACGTATGTAAACTTGT+GGG | + | chr1_4:2462939-2462958 | Msa0143530:CDS | 35.0% | |
| AATGAATCTTCCCTTTCAGT+AGG | - | chr1_4:2463148-2463167 | None:intergenic | 35.0% | |
| ! | CTTTTACCACCCAACAAAAA+TGG | + | chr1_4:2463345-2463364 | Msa0143530:intron | 35.0% |
| !! | ATTTACCCATTTTTGTTGGG+TGG | - | chr1_4:2463354-2463373 | None:intergenic | 35.0% |
| GATAAGATCTGTCTATAGAG+AGG | - | chr1_4:2463449-2463468 | None:intergenic | 35.0% | |
| ! | CTTAGCCACTTCTATTTTGT+TGG | + | chr1_4:2463534-2463553 | Msa0143530:intron | 35.0% |
| GTGATCCAACAAAATAGAAG+TGG | - | chr1_4:2463542-2463561 | None:intergenic | 35.0% | |
| TCAACATTTATGCAGTGTCT+CGG | - | chr1_4:2463597-2463616 | None:intergenic | 35.0% | |
| ! | TGATTTAAGTTAGCAGCACA+TGG | - | chr1_4:2463647-2463666 | None:intergenic | 35.0% |
| AGGATTGTACATGTCGTATA+TGG | + | chr1_4:2464080-2464099 | Msa0143530:CDS | 35.0% | |
| GGATTGTACATGTCGTATAT+GGG | + | chr1_4:2464081-2464100 | Msa0143530:CDS | 35.0% | |
| GATTGTACATGTCGTATATG+GGG | + | chr1_4:2464082-2464101 | Msa0143530:CDS | 35.0% | |
| !! | GCACATGTAAGTTCTAGATA+TGG | + | chr1_4:2464138-2464157 | Msa0143530:intron | 35.0% |
| GTCGATTAATTGAAGTTCTG+TGG | + | chr1_4:2464193-2464212 | Msa0143530:intron | 35.0% | |
| GGATCTGATCGAATAAACAT+TGG | + | chr1_4:2464214-2464233 | Msa0143530:intron | 35.0% | |
| CATGTGAACTTAGTATCTAC+AGG | + | chr1_4:2464274-2464293 | Msa0143530:intron | 35.0% | |
| ! | TTTGAGTCAGGTCTTTTAAG+GGG | - | chr1_4:2464380-2464399 | None:intergenic | 35.0% |
| !! | CGCTTTAATTTTGCTGTATG+AGG | + | chr1_4:2464437-2464456 | Msa0143530:intron | 35.0% |
| GCTGTATGAGGTTTAAATGA+CGG | + | chr1_4:2464449-2464468 | Msa0143530:intron | 35.0% | |
| CTGTATGAGGTTTAAATGAC+GGG | + | chr1_4:2464450-2464469 | Msa0143530:intron | 35.0% | |
| TGTATGAGGTTTAAATGACG+GGG | + | chr1_4:2464451-2464470 | Msa0143530:intron | 35.0% | |
| !! | CTCAAGTTGTTTTCTCTGTT+AGG | + | chr1_4:2464633-2464652 | Msa0143530:intron | 35.0% |
| !! | GTATTGGTTTCTATGTACAG+AGG | + | chr1_4:2464700-2464719 | Msa0143530:intron | 35.0% |
| ! | TTGTCACTTCTTATAACTGC+TGG | + | chr1_4:2464757-2464776 | Msa0143530:CDS | 35.0% |
| ! | TGTCACTTCTTATAACTGCT+GGG | + | chr1_4:2464758-2464777 | Msa0143530:CDS | 35.0% |
| CAACATATTAGGGATGCAAA+TGG | - | chr1_4:2464878-2464897 | None:intergenic | 35.0% | |
| CATTTGCATCCCTAATATGT+TGG | + | chr1_4:2464876-2464895 | Msa0143530:CDS | 35.0% | |
| CCAATATGCTCCAACATATT+AGG | - | chr1_4:2464889-2464908 | None:intergenic | 35.0% | |
| CCTAATATGTTGGAGCATAT+TGG | + | chr1_4:2464886-2464905 | Msa0143530:CDS | 35.0% | |
| CAACAAATAAGGAGGCAAAA+AGG | - | chr1_4:2465043-2465062 | None:intergenic | 35.0% | |
| ! | TTGTTTGCGTTTTTCATCTC+AGG | + | chr1_4:2465084-2465103 | Msa0143530:CDS | 35.0% |
| ! | CTTTTTGTTGCTACCAATCA+CGG | + | chr1_4:2465112-2465131 | Msa0143530:CDS | 35.0% |
| CTACCATGCTAAATTATGTG+AGG | + | chr1_4:2465141-2465160 | Msa0143530:CDS | 35.0% | |
| ATTTCCTTTACCATCTCCAA+TGG | - | chr1_4:2465284-2465303 | None:intergenic | 35.0% | |
| GTAAAGCTCAATCTAACTGT+AGG | - | chr1_4:2465343-2465362 | None:intergenic | 35.0% | |
| CAGTTAGATTGAGCTTTACT+TGG | + | chr1_4:2465344-2465363 | Msa0143530:CDS | 35.0% | |
| ! | ATCCATTTGTTGCCCAAGTT+TGG | + | chr1_4:2461656-2461675 | Msa0143530:CDS | 40.0% |
| CAAAACCCAATGACCAAACT+TGG | - | chr1_4:2461672-2461691 | None:intergenic | 40.0% | |
| ! | CAAGTTTGGTCATTGGGTTT+TGG | + | chr1_4:2461670-2461689 | Msa0143530:CDS | 40.0% |
| TTTGGATGTTTGCTTCCTCA+AGG | + | chr1_4:2461688-2461707 | Msa0143530:CDS | 40.0% | |
| CTGTTTACCTTGTTCGAATG+TGG | + | chr1_4:2462071-2462090 | Msa0143530:CDS | 40.0% | |
| GTTCTTAAGGTTCAATCACC+AGG | + | chr1_4:2462165-2462184 | Msa0143530:CDS | 40.0% | |
| ! | GATGCCTTTTGTACTCAATG+CGG | + | chr1_4:2462288-2462307 | Msa0143530:CDS | 40.0% |
| TTGTACTCAATGCGGTTATG+GGG | + | chr1_4:2462296-2462315 | Msa0143530:CDS | 40.0% | |
| !!! | AGTGTGGTTTTAAAAGTCGG+CGG | - | chr1_4:2462490-2462509 | None:intergenic | 40.0% |
| TGTAAACTTGTGGGACATGA+AGG | + | chr1_4:2462948-2462967 | Msa0143530:CDS | 40.0% | |
| GTTCAATCTTCCGAATAGCA+TGG | + | chr1_4:2462970-2462989 | Msa0143530:CDS | 40.0% | |
| CCAAATAAGACAAGGGCAAT+GGG | - | chr1_4:2463181-2463200 | None:intergenic | 40.0% | |
| TCCAAATAAGACAAGGGCAA+TGG | - | chr1_4:2463182-2463201 | None:intergenic | 40.0% | |
| TTGGACATAATGCTCGAGTT+TGG | + | chr1_4:2463197-2463216 | Msa0143530:CDS | 40.0% | |
| TGGACATAATGCTCGAGTTT+GGG | + | chr1_4:2463198-2463217 | Msa0143530:CDS | 40.0% | |
| GATGAAAGCAGCACCAATAA+GGG | - | chr1_4:2463503-2463522 | None:intergenic | 40.0% | |
| TGATGAAAGCAGCACCAATA+AGG | - | chr1_4:2463504-2463523 | None:intergenic | 40.0% | |
| ! | GCTGCTTTCATCAAGATAAG+TGG | + | chr1_4:2463511-2463530 | Msa0143530:intron | 40.0% |
| GTTTATTGTCACTGTCAGTG+AGG | + | chr1_4:2464060-2464079 | Msa0143530:intron | 40.0% | |
| TGTCGTATATGGGGAATTGA+TGG | + | chr1_4:2464091-2464110 | Msa0143530:CDS | 40.0% | |
| TTTAAGGGGGGGTAAACATA+AGG | - | chr1_4:2464366-2464385 | None:intergenic | 40.0% | |
| !! | TTGAGTCAGGTCTTTTAAGG+GGG | - | chr1_4:2464379-2464398 | None:intergenic | 40.0% |
| TGGTTTCTATGTACAGAGGT+AGG | + | chr1_4:2464704-2464723 | Msa0143530:intron | 40.0% | |
| GGTTTCTATGTACAGAGGTA+GGG | + | chr1_4:2464705-2464724 | Msa0143530:intron | 40.0% | |
| GTTTCTATGTACAGAGGTAG+GGG | + | chr1_4:2464706-2464725 | Msa0143530:intron | 40.0% | |
| AAAACATCTCTGTTCTTCCG+GGG | - | chr1_4:2464855-2464874 | None:intergenic | 40.0% | |
| GAAAACATCTCTGTTCTTCC+GGG | - | chr1_4:2464856-2464875 | None:intergenic | 40.0% | |
| GGAAAACATCTCTGTTCTTC+CGG | - | chr1_4:2464857-2464876 | None:intergenic | 40.0% | |
| AGCATATTGGATTGACAGAC+AGG | + | chr1_4:2464899-2464918 | Msa0143530:CDS | 40.0% | |
| TATTGGATTGACAGACAGGT+AGG | + | chr1_4:2464903-2464922 | Msa0143530:intron | 40.0% | |
| TTTGCCATATCCATGTTGAC+TGG | + | chr1_4:2465017-2465036 | Msa0143530:intron | 40.0% | |
| TCTTGCTGCAACAAATAAGG+AGG | - | chr1_4:2465051-2465070 | None:intergenic | 40.0% | |
| CACTCTTGCTGCAACAAATA+AGG | - | chr1_4:2465054-2465073 | None:intergenic | 40.0% | |
| ATGGTAGAGATAACCGTGAT+TGG | - | chr1_4:2465128-2465147 | None:intergenic | 40.0% | |
| CAGCCTCACATAATTTAGCA+TGG | - | chr1_4:2465147-2465166 | None:intergenic | 40.0% | |
| CATGCTAAATTATGTGAGGC+TGG | + | chr1_4:2465145-2465164 | Msa0143530:CDS | 40.0% | |
| CTGCATGGATTTATTGTCCA+AGG | + | chr1_4:2465219-2465238 | Msa0143530:CDS | 40.0% | |
| TCCAAGGACTCATTTGAACA+AGG | + | chr1_4:2465235-2465254 | Msa0143530:CDS | 40.0% | |
| TCCTTGTTCAAATGAGTCCT+TGG | - | chr1_4:2465239-2465258 | None:intergenic | 40.0% | |
| GACTCATTTGAACAAGGATG+TGG | + | chr1_4:2465241-2465260 | Msa0143530:CDS | 40.0% | |
| ATTGCCATTGGAGATGGTAA+AGG | + | chr1_4:2465277-2465296 | Msa0143530:CDS | 40.0% | |
| CTTTACTTGGCAAGCTGAAA+TGG | + | chr1_4:2465357-2465376 | Msa0143530:CDS | 40.0% | |
| AAAAGAAGCAGCAATGGCGA+CGG | + | chr1_4:2461237-2461256 | Msa0143530:exon | 45.0% | |
| AAGACCGACGCTTAATCGAA+TGG | + | chr1_4:2461263-2461282 | Msa0143530:CDS | 45.0% | |
| TCTCTTCCTCTTCTACTAGC+CGG | + | chr1_4:2461352-2461371 | Msa0143530:CDS | 45.0% | |
| TTCGATGGAATTCGTGTGCA+CGG | + | chr1_4:2461524-2461543 | Msa0143530:CDS | 45.0% | |
| GACCAAACTTGGGCAACAAA+TGG | - | chr1_4:2461661-2461680 | None:intergenic | 45.0% | |
| TGTTGCCCAAGTTTGGTCAT+TGG | + | chr1_4:2461663-2461682 | Msa0143530:CDS | 45.0% | |
| GTTGCCCAAGTTTGGTCATT+GGG | + | chr1_4:2461664-2461683 | Msa0143530:CDS | 45.0% | |
| TAAACAGCCCTACTACCAAG+TGG | - | chr1_4:2462058-2462077 | None:intergenic | 45.0% | |
| TCACTCTCCACATTCGAACA+AGG | - | chr1_4:2462081-2462100 | None:intergenic | 45.0% | |
| GAAGTTCTCCGTATTGCATC+CGG | + | chr1_4:2462329-2462348 | Msa0143530:CDS | 45.0% | |
| ! | ATTCTGGGGATGATCAGAGA+CGG | - | chr1_4:2462455-2462474 | None:intergenic | 45.0% |
| AATTAGATCCCTGACGGTCA+TGG | - | chr1_4:2462887-2462906 | None:intergenic | 45.0% | |
| AGCTGCAATTAGATCCCTGA+CGG | - | chr1_4:2462893-2462912 | None:intergenic | 45.0% | |
| CACAAGACGACCATGCTATT+CGG | - | chr1_4:2462983-2463002 | None:intergenic | 45.0% | |
| !! | TGTCTGTTTCTGATGACCGT+AGG | + | chr1_4:2463015-2463034 | Msa0143530:CDS | 45.0% |
| TATAATGCAGCGCACGTGTA+TGG | + | chr1_4:2463116-2463135 | Msa0143530:intron | 45.0% | |
| ATAATGCAGCGCACGTGTAT+GGG | + | chr1_4:2463117-2463136 | Msa0143530:intron | 45.0% | |
| ! | TATGGGCTGTTCCTACTGAA+AGG | + | chr1_4:2463134-2463153 | Msa0143530:CDS | 45.0% |
| ! | ATGGGCTGTTCCTACTGAAA+GGG | + | chr1_4:2463135-2463154 | Msa0143530:CDS | 45.0% |
| ! | CCCATTGCCCTTGTCTTATT+TGG | + | chr1_4:2463178-2463197 | Msa0143530:CDS | 45.0% |
| !! | TGAGTCAGGTCTTTTAAGGG+GGG | - | chr1_4:2464378-2464397 | None:intergenic | 45.0% |
| ! | TGTACAGAGGTAGGGGTATA+TGG | + | chr1_4:2464713-2464732 | Msa0143530:intron | 45.0% |
| TGGGTTTGACTCTGCTATCA+AGG | + | chr1_4:2464777-2464796 | Msa0143530:CDS | 45.0% | |
| ACTCTGCTATCAAGGTGCAT+AGG | + | chr1_4:2464785-2464804 | Msa0143530:CDS | 45.0% | |
| AAACATCTCTGTTCTTCCGG+GGG | - | chr1_4:2464854-2464873 | None:intergenic | 45.0% | |
| AAGGCCAGTCAACATGGATA+TGG | - | chr1_4:2465024-2465043 | None:intergenic | 45.0% | |
| GCTAAATTATGTGAGGCTGG+AGG | + | chr1_4:2465148-2465167 | Msa0143530:CDS | 45.0% | |
| ! | TGAACAAGGATGTGGTGATG+AGG | + | chr1_4:2465249-2465268 | Msa0143530:CDS | 45.0% |
| ! | AAGGATGTGGTGATGAGGAT+TGG | + | chr1_4:2465254-2465273 | Msa0143530:CDS | 45.0% |
| GATGAGGATTGGATTGCCAT+TGG | + | chr1_4:2465265-2465284 | Msa0143530:CDS | 45.0% | |
| GATTGGATTGCCATTGGAGA+TGG | + | chr1_4:2465271-2465290 | Msa0143530:CDS | 45.0% | |
| TGAAATGGAGAGGCAGCTAT+TGG | + | chr1_4:2465372-2465391 | Msa0143530:CDS | 45.0% | |
| GAAATGGAGAGGCAGCTATT+GGG | + | chr1_4:2465373-2465392 | Msa0143530:CDS | 45.0% | |
| GGCAGCTATTGGGTACTTAT+TGG | + | chr1_4:2465383-2465402 | Msa0143530:CDS | 45.0% | |
| GACGCCATTCGATTAAGCGT+CGG | - | chr1_4:2461270-2461289 | None:intergenic | 50.0% | |
| CTGAGATGTCGCCAAGGTAA+GGG | - | chr1_4:2461303-2461322 | None:intergenic | 50.0% | |
| ! | GAGATACCGGCTAGTAGAAG+AGG | - | chr1_4:2461361-2461380 | None:intergenic | 50.0% |
| TCGATGGAATTCGTGTGCAC+GGG | + | chr1_4:2461525-2461544 | Msa0143530:CDS | 50.0% | |
| ! | CGACTTGCCACTTGGTAGTA+GGG | + | chr1_4:2462048-2462067 | Msa0143530:intron | 50.0% |
| CGAATAGCATGGTCGTCTTG+TGG | + | chr1_4:2462981-2463000 | Msa0143530:CDS | 50.0% | |
| !! | GAGTCAGGTCTTTTAAGGGG+GGG | - | chr1_4:2464377-2464396 | None:intergenic | 50.0% |
| GCCTCATTCTTGTCTGTCCA+GGG | + | chr1_4:2464807-2464826 | Msa0143530:CDS | 50.0% | |
| CCTCATTCTTGTCTGTCCAG+GGG | + | chr1_4:2464808-2464827 | Msa0143530:CDS | 50.0% | |
| TTCTTGTCTGTCCAGGGGTT+TGG | + | chr1_4:2464813-2464832 | Msa0143530:CDS | 50.0% | |
| GGCAAAAAGGCCAGTCAACA+TGG | - | chr1_4:2465030-2465049 | None:intergenic | 50.0% | |
| TCGTTGGAATCAGCTTGTCC+AGG | + | chr1_4:2465174-2465193 | Msa0143530:CDS | 50.0% | |
| CGGGGCACAAATTATCTGCA+TGG | + | chr1_4:2465204-2465223 | Msa0143530:CDS | 50.0% | |
| CTTGGCAAGCTGAAATGGAG+AGG | + | chr1_4:2465362-2465381 | Msa0143530:CDS | 50.0% | |
| !! | GGTGCAAATCTTTGGGATCC+AGG | + | chr1_4:2465404-2465423 | Msa0143530:CDS | 50.0% |
| ATCGAATGGCGTCTGCATCG+TGG | + | chr1_4:2461277-2461296 | Msa0143530:CDS | 55.0% | |
| GCTGAGATGTCGCCAAGGTA+AGG | - | chr1_4:2461304-2461323 | None:intergenic | 55.0% | |
| AGAGAGCTGAGATGTCGCCA+AGG | - | chr1_4:2461309-2461328 | None:intergenic | 55.0% | |
| GTTGCTTGCGACTTGCCACT+TGG | + | chr1_4:2462040-2462059 | Msa0143530:intron | 55.0% | |
| ! | GCGACTTGCCACTTGGTAGT+AGG | + | chr1_4:2462047-2462066 | Msa0143530:intron | 55.0% |
| GGTTCGGGCAGATTGTCGTT+TGG | + | chr1_4:2462817-2462836 | Msa0143530:intron | 55.0% | |
| TCCAGAAGACCATGACCGTC+AGG | + | chr1_4:2462875-2462894 | Msa0143530:CDS | 55.0% | |
| CCAGAAGACCATGACCGTCA+GGG | + | chr1_4:2462876-2462895 | Msa0143530:CDS | 55.0% | |
| GGCCTCATTCTTGTCTGTCC+AGG | + | chr1_4:2464806-2464825 | Msa0143530:CDS | 55.0% | |
| CCCCTGGACAGACAAGAATG+AGG | - | chr1_4:2464811-2464830 | None:intergenic | 55.0% | |
| GCAGCAGCACAATTATCCCC+CGG | + | chr1_4:2464835-2464854 | Msa0143530:CDS | 55.0% | |
| CAGCTTGTCCAGGTCAGCAA+CGG | + | chr1_4:2465184-2465203 | Msa0143530:CDS | 55.0% | |
| AGCTTGTCCAGGTCAGCAAC+GGG | + | chr1_4:2465185-2465204 | Msa0143530:CDS | 55.0% | |
| CTGCATCGTGGCCCTTACCT+TGG | + | chr1_4:2461289-2461308 | Msa0143530:CDS | 60.0% | |
| CCCTGACGGTCATGGTCTTC+TGG | - | chr1_4:2462879-2462898 | None:intergenic | 60.0% | |
| ! | TTGTGCTGCTGCCAAACCCC+TGG | - | chr1_4:2464827-2464846 | None:intergenic | 60.0% |
| GCTTGTCCAGGTCAGCAACG+GGG | + | chr1_4:2465186-2465205 | Msa0143530:CDS | 60.0% | |
| TTTGTGCCCCGTTGCTGACC+TGG | - | chr1_4:2465195-2465214 | None:intergenic | 60.0% | |
| !! | GTGAGGCTGGAGGTGCTCGT+TGG | + | chr1_4:2465158-2465177 | Msa0143530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 2461220 | 2465429 | 2461220 | ID=Msa0143530;Name=Msa0143530 |
| chr1_4 | mRNA | 2461220 | 2465429 | 2461220 | ID=Msa0143530-mRNA-1;Parent=Msa0143530;Name=Msa0143530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=30|1|0.77|1|1|1|9|0|515 |
| chr1_4 | exon | 2461220 | 2461373 | 2461220 | ID=Msa0143530-mRNA-1:exon:1051;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2461459 | 2461709 | 2461459 | ID=Msa0143530-mRNA-1:exon:1052;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2462069 | 2462186 | 2462069 | ID=Msa0143530-mRNA-1:exon:1053;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2462285 | 2462367 | 2462285 | ID=Msa0143530-mRNA-1:exon:1054;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2462828 | 2463036 | 2462828 | ID=Msa0143530-mRNA-1:exon:1055;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2463126 | 2463240 | 2463126 | ID=Msa0143530-mRNA-1:exon:1056;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2464061 | 2464143 | 2464061 | ID=Msa0143530-mRNA-1:exon:1057;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2464720 | 2464920 | 2464720 | ID=Msa0143530-mRNA-1:exon:1058;Parent=Msa0143530-mRNA-1 |
| chr1_4 | exon | 2465066 | 2465429 | 2465066 | ID=Msa0143530-mRNA-1:exon:1059;Parent=Msa0143530-mRNA-1 |
| chr1_4 | five_prime_UTR | 2461220 | 2461249 | 2461220 | ID=Msa0143530-mRNA-1:five_prime_utr;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2461250 | 2461373 | 2461250 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2461459 | 2461709 | 2461459 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2462069 | 2462186 | 2462069 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2462285 | 2462367 | 2462285 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2462828 | 2463036 | 2462828 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2463126 | 2463240 | 2463126 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2464061 | 2464143 | 2464061 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2464720 | 2464920 | 2464720 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| chr1_4 | CDS | 2465066 | 2465429 | 2465066 | ID=Msa0143530-mRNA-1:cds;Parent=Msa0143530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
