Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152040 | G7I977 | 73.333 | 240 | 50 | 6 | 20 | 254 | 19 | 249 | 2.94e-107 | 333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064240 | Msa0152040 | 0.807491 | 4.926582e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152040 | MtrunA17_Chr1g0160711 | 73.222 | 239 | 50 | 6 | 21 | 254 | 17 | 246 | 1.66e-110 | 332 |
| Msa0152040 | MtrunA17_Chr1g0160761 | 64.528 | 265 | 71 | 6 | 1 | 254 | 1 | 253 | 9.54e-102 | 310 |
| Msa0152040 | MtrunA17_Chr1g0160661 | 62.548 | 259 | 78 | 5 | 1 | 257 | 27 | 268 | 7.01e-100 | 300 |
| Msa0152040 | MtrunA17_Chr1g0160721 | 60.153 | 261 | 83 | 7 | 1 | 258 | 12 | 254 | 2.10e-91 | 284 |
| Msa0152040 | MtrunA17_Chr1g0160701 | 59.259 | 243 | 74 | 11 | 18 | 250 | 33 | 260 | 5.31e-75 | 241 |
| Msa0152040 | MtrunA17_Chr1g0160561 | 52.075 | 265 | 106 | 8 | 3 | 256 | 7 | 261 | 1.52e-74 | 240 |
| Msa0152040 | MtrunA17_Chr1g0158061 | 38.009 | 221 | 108 | 11 | 33 | 240 | 35 | 239 | 1.20e-28 | 110 |
| Msa0152040 | MtrunA17_Chr1g0158151 | 35.060 | 251 | 125 | 13 | 25 | 253 | 27 | 261 | 3.28e-27 | 110 |
| Msa0152040 | MtrunA17_Chr1g0157791 | 34.836 | 244 | 131 | 11 | 24 | 253 | 28 | 257 | 1.91e-26 | 108 |
| Msa0152040 | MtrunA17_Chr1g0158411 | 33.077 | 260 | 130 | 10 | 2 | 240 | 15 | 251 | 2.31e-26 | 108 |
| Msa0152040 | MtrunA17_Chr3g0088331 | 31.474 | 251 | 133 | 9 | 21 | 258 | 34 | 258 | 1.45e-24 | 99.8 |
| Msa0152040 | MtrunA17_Chr1g0157991 | 34.468 | 235 | 121 | 12 | 24 | 240 | 28 | 247 | 3.65e-24 | 102 |
| Msa0152040 | MtrunA17_Chr1g0157961 | 34.632 | 231 | 122 | 12 | 24 | 240 | 33 | 248 | 1.01e-23 | 97.8 |
| Msa0152040 | MtrunA17_Chr1g0158191 | 34.177 | 237 | 119 | 13 | 24 | 239 | 24 | 244 | 1.37e-23 | 100 |
| Msa0152040 | MtrunA17_Chr1g0157881 | 32.313 | 294 | 124 | 16 | 8 | 240 | 30 | 309 | 1.04e-22 | 97.8 |
| Msa0152040 | MtrunA17_Chr1g0158041 | 34.978 | 223 | 117 | 9 | 33 | 240 | 36 | 245 | 3.03e-21 | 93.2 |
| Msa0152040 | MtrunA17_Chr6g0467711 | 34.222 | 225 | 106 | 11 | 33 | 240 | 48 | 247 | 6.87e-21 | 92.4 |
| Msa0152040 | MtrunA17_Chr1g0158461 | 30.325 | 277 | 138 | 14 | 1 | 240 | 16 | 274 | 8.14e-21 | 90.1 |
| Msa0152040 | MtrunA17_Chr1g0157911 | 29.771 | 262 | 143 | 12 | 3 | 240 | 6 | 250 | 1.06e-20 | 91.7 |
| Msa0152040 | MtrunA17_Chr1g0158631 | 29.391 | 279 | 150 | 10 | 5 | 257 | 11 | 268 | 1.08e-20 | 91.7 |
| Msa0152040 | MtrunA17_Chr1g0158761 | 31.356 | 236 | 133 | 10 | 8 | 240 | 9 | 218 | 1.75e-20 | 90.9 |
| Msa0152040 | MtrunA17_Chr1g0158731 | 29.323 | 266 | 137 | 11 | 1 | 240 | 1 | 241 | 3.14e-20 | 88.2 |
| Msa0152040 | MtrunA17_Chr1g0157861 | 31.395 | 258 | 109 | 13 | 33 | 240 | 45 | 284 | 5.90e-20 | 89.7 |
| Msa0152040 | MtrunA17_Chr1g0158331 | 27.660 | 282 | 132 | 11 | 1 | 240 | 16 | 267 | 1.32e-18 | 84.3 |
| Msa0152040 | MtrunA17_Chr1g0158661 | 28.112 | 249 | 137 | 10 | 8 | 238 | 18 | 242 | 6.19e-18 | 83.6 |
| Msa0152040 | MtrunA17_Chr1g0158541 | 29.231 | 260 | 144 | 11 | 3 | 240 | 9 | 250 | 1.01e-16 | 80.1 |
| Msa0152040 | MtrunA17_Chr1g0158121 | 45.055 | 91 | 38 | 3 | 24 | 112 | 29 | 109 | 2.03e-15 | 71.6 |
| Msa0152040 | MtrunA17_Chr1g0158301 | 24.701 | 251 | 161 | 8 | 2 | 240 | 14 | 248 | 4.17e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 58 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTCACCATACGATTAT+TGG | 0.109624 | 1_4:-14377112 | Msa0152040:CDS |
| TTTATGGATTTGAACTTTCT+TGG | 0.219600 | 1_4:-14376711 | Msa0152040:CDS |
| AACCGTGAAGTTGGAGGGTT+TGG | 0.263256 | 1_4:+14376608 | None:intergenic |
| TAAGAATATTCTGTTCGATT+TGG | 0.285653 | 1_4:+14376931 | None:intergenic |
| CTTTCGTCGCCACATTCTTT+AGG | 0.288709 | 1_4:+14377246 | None:intergenic |
| CTGATTTCTGTATTGATCAT+AGG | 0.339669 | 1_4:+14376996 | None:intergenic |
| GGTTATTGTCCTCACATGAT+AGG | 0.347453 | 1_4:+14377217 | None:intergenic |
| TTATAGAGTCCCAAAGAATA+AGG | 0.355050 | 1_4:+14377054 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 1_4:-14376826 | Msa0152040:CDS |
| CCCCAAACCCTCCAACTTCA+CGG | 0.374762 | 1_4:-14376610 | Msa0152040:CDS |
| GTCCCAAAGAATAAGGATAA+GGG | 0.386660 | 1_4:+14377061 | None:intergenic |
| ACCGTGAAGTTGGAGGGTTT+GGG | 0.395142 | 1_4:+14376609 | None:intergenic |
| CACCAACATAGAATGAATTC+TGG | 0.400028 | 1_4:+14376860 | None:intergenic |
| TGGAGGGTTTGGGGCAAACC+TGG | 0.402838 | 1_4:+14376619 | None:intergenic |
| ATTCATAGTACAAAATCAAT+TGG | 0.420245 | 1_4:+14377196 | None:intergenic |
| CACCATGACAAAGGACGTTA+AGG | 0.437400 | 1_4:+14377380 | None:intergenic |
| CTTTAGGACTGTCTTTCAAT+CGG | 0.440304 | 1_4:+14377262 | None:intergenic |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 1_4:-14376819 | Msa0152040:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 1_4:-14376809 | Msa0152040:CDS |
| CTATGATCAATACAGAAATC+AGG | 0.451527 | 1_4:-14376995 | Msa0152040:CDS |
| AGTCCCAAAGAATAAGGATA+AGG | 0.454161 | 1_4:+14377060 | None:intergenic |
| TTCCTTAACGTCCTTTGTCA+TGG | 0.467294 | 1_4:-14377382 | Msa0152040:CDS |
| CAGCATTTATGCATAGATCC+AGG | 0.473086 | 1_4:-14376637 | Msa0152040:CDS |
| TACAGAAATCAGGCTGATCA+TGG | 0.478206 | 1_4:-14376985 | Msa0152040:CDS |
| GAATATTCTTACATTGATAG+AGG | 0.483464 | 1_4:-14376919 | Msa0152040:CDS |
| GACTGTCTTTCAATCGGAAA+GGG | 0.486294 | 1_4:+14377268 | None:intergenic |
| CAGAATTCATTCTATGTTGG+TGG | 0.488195 | 1_4:-14376859 | Msa0152040:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 1_4:-14376820 | Msa0152040:CDS |
| AATTTCAGCAGCTCTTACTA+CGG | 0.499357 | 1_4:-14377033 | Msa0152040:CDS |
| CTCAATAGTCTTTGTAACGA+TGG | 0.507840 | 1_4:-14376688 | Msa0152040:CDS |
| GTATTGATCATAGGCTAGGT+AGG | 0.512248 | 1_4:+14377005 | None:intergenic |
| ATATTGTTTCCATCTTCAAA+AGG | 0.513137 | 1_4:+14376763 | None:intergenic |
| CCGTGAAGTTGGAGGGTTTG+GGG | 0.543036 | 1_4:+14376610 | None:intergenic |
| CTGGATCTATGCATAAATGC+TGG | 0.546333 | 1_4:+14376638 | None:intergenic |
| GGACTGTCTTTCAATCGGAA+AGG | 0.555052 | 1_4:+14377267 | None:intergenic |
| TACCAGAATTCATTCTATGT+TGG | 0.556648 | 1_4:-14376862 | Msa0152040:CDS |
| AACTTAAACCGTGAAGTTGG+AGG | 0.556661 | 1_4:+14376602 | None:intergenic |
| ATTGAAATCCAATAATCGTA+TGG | 0.557777 | 1_4:+14377104 | None:intergenic |
| TTCTGTATTGATCATAGGCT+AGG | 0.570771 | 1_4:+14377001 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | 1_4:-14376786 | Msa0152040:CDS |
| CTAAAGAATGTGGCGACGAA+AGG | 0.572954 | 1_4:-14377245 | Msa0152040:CDS |
| TAATGAGCAACAAAGTGCAC+GGG | 0.574994 | 1_4:-14377344 | Msa0152040:CDS |
| ACTTAAACCGTGAAGTTGGA+GGG | 0.577577 | 1_4:+14376603 | None:intergenic |
| TATTGATCATAGGCTAGGTA+GGG | 0.590909 | 1_4:+14377006 | None:intergenic |
| TTGTACAGACATGCGACGAA+TGG | 0.590999 | 1_4:-14376737 | Msa0152040:CDS |
| CTAATGAGCAACAAAGTGCA+CGG | 0.603229 | 1_4:-14377345 | Msa0152040:CDS |
| TCCCAAAGAATAAGGATAAG+GGG | 0.603534 | 1_4:+14377062 | None:intergenic |
| TATTCTTACATTGATAGAGG+TGG | 0.610966 | 1_4:-14376916 | Msa0152040:CDS |
| AACAAGAGTCATGTTCAAGA+AGG | 0.614007 | 1_4:-14377314 | Msa0152040:CDS |
| TGTCTTTCAATCGGAAAGGG+TGG | 0.614015 | 1_4:+14377271 | None:intergenic |
| CACTACTAACACCATGACAA+AGG | 0.617199 | 1_4:+14377371 | None:intergenic |
| TATGAATTTGAAGAATACCA+TGG | 0.632125 | 1_4:-14377180 | Msa0152040:CDS |
| AAAGACAGTCCTAAAGAATG+TGG | 0.636442 | 1_4:-14377255 | Msa0152040:CDS |
| TACCATGGAAAATACTACCA+TGG | 0.642877 | 1_4:-14377165 | Msa0152040:CDS |
| CCCAAAGAATAAGGATAAGG+GGG | 0.652778 | 1_4:+14377063 | None:intergenic |
| GAGTCATGTTCAAGAAGGTG+CGG | 0.657869 | 1_4:-14377309 | Msa0152040:CDS |
| AAGGTACAACCTATCATGTG+AGG | 0.692861 | 1_4:-14377226 | Msa0152040:CDS |
| AATGAGCAACAAAGTGCACG+GGG | 0.738445 | 1_4:-14377343 | Msa0152040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATAGTACAAAATCAAT+TGG | + | chr1_4:14376767-14376786 | None:intergenic | 20.0% |
| !! | AAAAAATCTCTTTCAGATTT+GGG | - | chr1_4:14377128-14377147 | Msa0152040:CDS | 20.0% |
| !! | ATTCATAGTACAAAATCAAT+TGG | + | chr1_4:14376767-14376786 | None:intergenic | 20.0% |
| !! | AAAAAATCTCTTTCAGATTT+GGG | - | chr1_4:14377128-14377147 | Msa0152040:CDS | 20.0% |
| ! | TATGAATTTGAAGAATACCA+TGG | - | chr1_4:14376780-14376799 | Msa0152040:CDS | 25.0% |
| ! | ATTGAAATCCAATAATCGTA+TGG | + | chr1_4:14376859-14376878 | None:intergenic | 25.0% |
| ! | TAAGAATATTCTGTTCGATT+TGG | + | chr1_4:14377032-14377051 | None:intergenic | 25.0% |
| ! | GAATATTCTTACATTGATAG+AGG | - | chr1_4:14377041-14377060 | Msa0152040:CDS | 25.0% |
| ! | CAAAAAATCTCTTTCAGATT+TGG | - | chr1_4:14377127-14377146 | Msa0152040:CDS | 25.0% |
| ! | ATATTGTTTCCATCTTCAAA+AGG | + | chr1_4:14377200-14377219 | None:intergenic | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | chr1_4:14377249-14377268 | Msa0152040:CDS | 25.0% |
| ! | TATGAATTTGAAGAATACCA+TGG | - | chr1_4:14376780-14376799 | Msa0152040:CDS | 25.0% |
| ! | ATTGAAATCCAATAATCGTA+TGG | + | chr1_4:14376859-14376878 | None:intergenic | 25.0% |
| ! | TAAGAATATTCTGTTCGATT+TGG | + | chr1_4:14377032-14377051 | None:intergenic | 25.0% |
| ! | GAATATTCTTACATTGATAG+AGG | - | chr1_4:14377041-14377060 | Msa0152040:CDS | 25.0% |
| ! | CAAAAAATCTCTTTCAGATT+TGG | - | chr1_4:14377127-14377146 | Msa0152040:CDS | 25.0% |
| ! | ATATTGTTTCCATCTTCAAA+AGG | + | chr1_4:14377200-14377219 | None:intergenic | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | chr1_4:14377249-14377268 | Msa0152040:CDS | 25.0% |
| ! | ATTGTACGTAGTATTTTCCA+TGG | + | chr1_4:14376815-14376834 | None:intergenic | 30.0% |
| TTATAGAGTCCCAAAGAATA+AGG | + | chr1_4:14376909-14376928 | None:intergenic | 30.0% | |
| ! | CTGATTTCTGTATTGATCAT+AGG | + | chr1_4:14376967-14376986 | None:intergenic | 30.0% |
| CTATGATCAATACAGAAATC+AGG | - | chr1_4:14376965-14376984 | Msa0152040:CDS | 30.0% | |
| TATTCTTACATTGATAGAGG+TGG | - | chr1_4:14377044-14377063 | Msa0152040:CDS | 30.0% | |
| TACCAGAATTCATTCTATGT+TGG | - | chr1_4:14377098-14377117 | Msa0152040:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_4:14377174-14377193 | Msa0152040:CDS | 30.0% | |
| AAAAACTTAAACCGTGAAGT+TGG | + | chr1_4:14377364-14377383 | None:intergenic | 30.0% | |
| ! | ATTGTACGTAGTATTTTCCA+TGG | + | chr1_4:14376815-14376834 | None:intergenic | 30.0% |
| TTATAGAGTCCCAAAGAATA+AGG | + | chr1_4:14376909-14376928 | None:intergenic | 30.0% | |
| ! | CTGATTTCTGTATTGATCAT+AGG | + | chr1_4:14376967-14376986 | None:intergenic | 30.0% |
| CTATGATCAATACAGAAATC+AGG | - | chr1_4:14376965-14376984 | Msa0152040:CDS | 30.0% | |
| TATTCTTACATTGATAGAGG+TGG | - | chr1_4:14377044-14377063 | Msa0152040:CDS | 30.0% | |
| TACCAGAATTCATTCTATGT+TGG | - | chr1_4:14377098-14377117 | Msa0152040:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_4:14377174-14377193 | Msa0152040:CDS | 30.0% | |
| AAAAACTTAAACCGTGAAGT+TGG | + | chr1_4:14377364-14377383 | None:intergenic | 30.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_4:14376646-14376665 | Msa0152040:CDS | 35.0% | |
| !! | CTTTAGGACTGTCTTTCAAT+CGG | + | chr1_4:14376701-14376720 | None:intergenic | 35.0% |
| AAAGACAGTCCTAAAGAATG+TGG | - | chr1_4:14376705-14376724 | Msa0152040:CDS | 35.0% | |
| TACCATGGAAAATACTACCA+TGG | - | chr1_4:14376795-14376814 | Msa0152040:CDS | 35.0% | |
| ! | TTCCATGGTAGTATTTTCCA+TGG | + | chr1_4:14376800-14376819 | None:intergenic | 35.0% |
| CAACTTCACCATACGATTAT+TGG | - | chr1_4:14376848-14376867 | Msa0152040:CDS | 35.0% | |
| TCCCAAAGAATAAGGATAAG+GGG | + | chr1_4:14376901-14376920 | None:intergenic | 35.0% | |
| GTCCCAAAGAATAAGGATAA+GGG | + | chr1_4:14376902-14376921 | None:intergenic | 35.0% | |
| AGTCCCAAAGAATAAGGATA+AGG | + | chr1_4:14376903-14376922 | None:intergenic | 35.0% | |
| AATTTCAGCAGCTCTTACTA+CGG | - | chr1_4:14376927-14376946 | Msa0152040:CDS | 35.0% | |
| TATTGATCATAGGCTAGGTA+GGG | + | chr1_4:14376957-14376976 | None:intergenic | 35.0% | |
| ! | TTCTGTATTGATCATAGGCT+AGG | + | chr1_4:14376962-14376981 | None:intergenic | 35.0% |
| CACCAACATAGAATGAATTC+TGG | + | chr1_4:14377103-14377122 | None:intergenic | 35.0% | |
| CAGAATTCATTCTATGTTGG+TGG | - | chr1_4:14377101-14377120 | Msa0152040:CDS | 35.0% | |
| CTCAATAGTCTTTGTAACGA+TGG | - | chr1_4:14377272-14377291 | Msa0152040:CDS | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_4:14376646-14376665 | Msa0152040:CDS | 35.0% | |
| !! | CTTTAGGACTGTCTTTCAAT+CGG | + | chr1_4:14376701-14376720 | None:intergenic | 35.0% |
| AAAGACAGTCCTAAAGAATG+TGG | - | chr1_4:14376705-14376724 | Msa0152040:CDS | 35.0% | |
| TACCATGGAAAATACTACCA+TGG | - | chr1_4:14376795-14376814 | Msa0152040:CDS | 35.0% | |
| ! | TTCCATGGTAGTATTTTCCA+TGG | + | chr1_4:14376800-14376819 | None:intergenic | 35.0% |
| CAACTTCACCATACGATTAT+TGG | - | chr1_4:14376848-14376867 | Msa0152040:CDS | 35.0% | |
| TCCCAAAGAATAAGGATAAG+GGG | + | chr1_4:14376901-14376920 | None:intergenic | 35.0% | |
| GTCCCAAAGAATAAGGATAA+GGG | + | chr1_4:14376902-14376921 | None:intergenic | 35.0% | |
| AGTCCCAAAGAATAAGGATA+AGG | + | chr1_4:14376903-14376922 | None:intergenic | 35.0% | |
| AATTTCAGCAGCTCTTACTA+CGG | - | chr1_4:14376927-14376946 | Msa0152040:CDS | 35.0% | |
| TATTGATCATAGGCTAGGTA+GGG | + | chr1_4:14376957-14376976 | None:intergenic | 35.0% | |
| ! | TTCTGTATTGATCATAGGCT+AGG | + | chr1_4:14376962-14376981 | None:intergenic | 35.0% |
| CACCAACATAGAATGAATTC+TGG | + | chr1_4:14377103-14377122 | None:intergenic | 35.0% | |
| CAGAATTCATTCTATGTTGG+TGG | - | chr1_4:14377101-14377120 | Msa0152040:CDS | 35.0% | |
| CTCAATAGTCTTTGTAACGA+TGG | - | chr1_4:14377272-14377291 | Msa0152040:CDS | 35.0% | |
| TTCCTTAACGTCCTTTGTCA+TGG | - | chr1_4:14376578-14376597 | Msa0152040:CDS | 40.0% | |
| CACTACTAACACCATGACAA+AGG | + | chr1_4:14376592-14376611 | None:intergenic | 40.0% | |
| CTAATGAGCAACAAAGTGCA+CGG | - | chr1_4:14376615-14376634 | Msa0152040:CDS | 40.0% | |
| TAATGAGCAACAAAGTGCAC+GGG | - | chr1_4:14376616-14376635 | Msa0152040:CDS | 40.0% | |
| GACTGTCTTTCAATCGGAAA+GGG | + | chr1_4:14376695-14376714 | None:intergenic | 40.0% | |
| AAGGTACAACCTATCATGTG+AGG | - | chr1_4:14376734-14376753 | Msa0152040:CDS | 40.0% | |
| GGTTATTGTCCTCACATGAT+AGG | + | chr1_4:14376746-14376765 | None:intergenic | 40.0% | |
| ACCCCCTTATCCTTATTCTT+TGG | - | chr1_4:14376896-14376915 | Msa0152040:CDS | 40.0% | |
| CCCAAAGAATAAGGATAAGG+GGG | + | chr1_4:14376900-14376919 | None:intergenic | 40.0% | |
| CCCCCTTATCCTTATTCTTT+GGG | - | chr1_4:14376897-14376916 | Msa0152040:CDS | 40.0% | |
| ! | GTATTGATCATAGGCTAGGT+AGG | + | chr1_4:14376958-14376977 | None:intergenic | 40.0% |
| TACAGAAATCAGGCTGATCA+TGG | - | chr1_4:14376975-14376994 | Msa0152040:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_4:14377134-14377153 | Msa0152040:CDS | 40.0% |
| !! | ACATCATGGCCTTTTGAAGA+TGG | - | chr1_4:14377188-14377207 | Msa0152040:CDS | 40.0% |
| ! | ATGCGACGAATGGTGTTTTA+TGG | - | chr1_4:14377233-14377252 | Msa0152040:CDS | 40.0% |
| CTGGATCTATGCATAAATGC+TGG | + | chr1_4:14377325-14377344 | None:intergenic | 40.0% | |
| CAGCATTTATGCATAGATCC+AGG | - | chr1_4:14377323-14377342 | Msa0152040:CDS | 40.0% | |
| ACTTAAACCGTGAAGTTGGA+GGG | + | chr1_4:14377360-14377379 | None:intergenic | 40.0% | |
| AACTTAAACCGTGAAGTTGG+AGG | + | chr1_4:14377361-14377380 | None:intergenic | 40.0% | |
| TTCCTTAACGTCCTTTGTCA+TGG | - | chr1_4:14376578-14376597 | Msa0152040:CDS | 40.0% | |
| CACTACTAACACCATGACAA+AGG | + | chr1_4:14376592-14376611 | None:intergenic | 40.0% | |
| CTAATGAGCAACAAAGTGCA+CGG | - | chr1_4:14376615-14376634 | Msa0152040:CDS | 40.0% | |
| TAATGAGCAACAAAGTGCAC+GGG | - | chr1_4:14376616-14376635 | Msa0152040:CDS | 40.0% | |
| GACTGTCTTTCAATCGGAAA+GGG | + | chr1_4:14376695-14376714 | None:intergenic | 40.0% | |
| AAGGTACAACCTATCATGTG+AGG | - | chr1_4:14376734-14376753 | Msa0152040:CDS | 40.0% | |
| GGTTATTGTCCTCACATGAT+AGG | + | chr1_4:14376746-14376765 | None:intergenic | 40.0% | |
| ACCCCCTTATCCTTATTCTT+TGG | - | chr1_4:14376896-14376915 | Msa0152040:CDS | 40.0% | |
| CCCAAAGAATAAGGATAAGG+GGG | + | chr1_4:14376900-14376919 | None:intergenic | 40.0% | |
| CCCCCTTATCCTTATTCTTT+GGG | - | chr1_4:14376897-14376916 | Msa0152040:CDS | 40.0% | |
| ! | GTATTGATCATAGGCTAGGT+AGG | + | chr1_4:14376958-14376977 | None:intergenic | 40.0% |
| TACAGAAATCAGGCTGATCA+TGG | - | chr1_4:14376975-14376994 | Msa0152040:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_4:14377134-14377153 | Msa0152040:CDS | 40.0% |
| !! | ACATCATGGCCTTTTGAAGA+TGG | - | chr1_4:14377188-14377207 | Msa0152040:CDS | 40.0% |
| ! | ATGCGACGAATGGTGTTTTA+TGG | - | chr1_4:14377233-14377252 | Msa0152040:CDS | 40.0% |
| CTGGATCTATGCATAAATGC+TGG | + | chr1_4:14377325-14377344 | None:intergenic | 40.0% | |
| CAGCATTTATGCATAGATCC+AGG | - | chr1_4:14377323-14377342 | Msa0152040:CDS | 40.0% | |
| ACTTAAACCGTGAAGTTGGA+GGG | + | chr1_4:14377360-14377379 | None:intergenic | 40.0% | |
| AACTTAAACCGTGAAGTTGG+AGG | + | chr1_4:14377361-14377380 | None:intergenic | 40.0% | |
| CACCATGACAAAGGACGTTA+AGG | + | chr1_4:14376583-14376602 | None:intergenic | 45.0% | |
| AATGAGCAACAAAGTGCACG+GGG | - | chr1_4:14376617-14376636 | Msa0152040:CDS | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | - | chr1_4:14376651-14376670 | Msa0152040:CDS | 45.0% | |
| TGTCTTTCAATCGGAAAGGG+TGG | + | chr1_4:14376692-14376711 | None:intergenic | 45.0% | |
| GGACTGTCTTTCAATCGGAA+AGG | + | chr1_4:14376696-14376715 | None:intergenic | 45.0% | |
| CTTTCGTCGCCACATTCTTT+AGG | + | chr1_4:14376717-14376736 | None:intergenic | 45.0% | |
| CTAAAGAATGTGGCGACGAA+AGG | - | chr1_4:14376715-14376734 | Msa0152040:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_4:14377140-14377159 | Msa0152040:CDS | 45.0% |
| TTGTACAGACATGCGACGAA+TGG | - | chr1_4:14377223-14377242 | Msa0152040:CDS | 45.0% | |
| CACCATGACAAAGGACGTTA+AGG | + | chr1_4:14376583-14376602 | None:intergenic | 45.0% | |
| AATGAGCAACAAAGTGCACG+GGG | - | chr1_4:14376617-14376636 | Msa0152040:CDS | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | - | chr1_4:14376651-14376670 | Msa0152040:CDS | 45.0% | |
| TGTCTTTCAATCGGAAAGGG+TGG | + | chr1_4:14376692-14376711 | None:intergenic | 45.0% | |
| GGACTGTCTTTCAATCGGAA+AGG | + | chr1_4:14376696-14376715 | None:intergenic | 45.0% | |
| CTTTCGTCGCCACATTCTTT+AGG | + | chr1_4:14376717-14376736 | None:intergenic | 45.0% | |
| CTAAAGAATGTGGCGACGAA+AGG | - | chr1_4:14376715-14376734 | Msa0152040:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_4:14377140-14377159 | Msa0152040:CDS | 45.0% |
| TTGTACAGACATGCGACGAA+TGG | - | chr1_4:14377223-14377242 | Msa0152040:CDS | 45.0% | |
| !!! | AGTTTTTTATTTTTATTTTA+TGG | - | chr1_4:14377377-14377396 | Msa0152040:CDS | 5.0% |
| !!! | GTTTTTTATTTTTATTTTAT+GGG | - | chr1_4:14377378-14377397 | Msa0152040:CDS | 5.0% |
| !!! | AGTTTTTTATTTTTATTTTA+TGG | - | chr1_4:14377377-14377396 | Msa0152040:CDS | 5.0% |
| !!! | GTTTTTTATTTTTATTTTAT+GGG | - | chr1_4:14377378-14377397 | Msa0152040:CDS | 5.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_4:14377141-14377160 | Msa0152040:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | chr1_4:14377151-14377170 | Msa0152040:CDS | 50.0% |
| ACCGTGAAGTTGGAGGGTTT+GGG | + | chr1_4:14377354-14377373 | None:intergenic | 50.0% | |
| AACCGTGAAGTTGGAGGGTT+TGG | + | chr1_4:14377355-14377374 | None:intergenic | 50.0% | |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_4:14377141-14377160 | Msa0152040:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | chr1_4:14377151-14377170 | Msa0152040:CDS | 50.0% |
| ACCGTGAAGTTGGAGGGTTT+GGG | + | chr1_4:14377354-14377373 | None:intergenic | 50.0% | |
| AACCGTGAAGTTGGAGGGTT+TGG | + | chr1_4:14377355-14377374 | None:intergenic | 50.0% | |
| CCGTGAAGTTGGAGGGTTTG+GGG | + | chr1_4:14377353-14377372 | None:intergenic | 55.0% | |
| CCCCAAACCCTCCAACTTCA+CGG | - | chr1_4:14377350-14377369 | Msa0152040:CDS | 55.0% | |
| CCGTGAAGTTGGAGGGTTTG+GGG | + | chr1_4:14377353-14377372 | None:intergenic | 55.0% | |
| CCCCAAACCCTCCAACTTCA+CGG | - | chr1_4:14377350-14377369 | Msa0152040:CDS | 55.0% | |
| ! | TGGAGGGTTTGGGGCAAACC+TGG | + | chr1_4:14377344-14377363 | None:intergenic | 60.0% |
| ! | TGGAGGGTTTGGGGCAAACC+TGG | + | chr1_4:14377344-14377363 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 14376573 | 14377409 | 14376573 | ID=Msa0152040;Name=Msa0152040 |
| chr1_4 | mRNA | 14376573 | 14377409 | 14376573 | ID=Msa0152040-mRNA-1;Parent=Msa0152040;Name=Msa0152040-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|278 |
| chr1_4 | exon | 14376573 | 14377409 | 14376573 | ID=Msa0152040-mRNA-1:exon:5724;Parent=Msa0152040-mRNA-1 |
| chr1_4 | CDS | 14376573 | 14377409 | 14376573 | ID=Msa0152040-mRNA-1:cds;Parent=Msa0152040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
