Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152540 | XP_013466603.1 | 69.620 | 79 | 17 | 2 | 1125 | 1196 | 490 | 568 | 7.92e-16 | 96.3 |
Msa0152540 | XP_013466603.1 | 90.383 | 1123 | 93 | 2 | 1 | 1123 | 1 | 1108 | 0.0 | 2099 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152540 | sp|Q9LQV2|RDR1_ARATH | 61.643 | 1108 | 397 | 10 | 4 | 1107 | 2 | 1085 | 0.0 | 1370 |
Msa0152540 | sp|Q9LQV2|RDR1_ARATH | 58.974 | 78 | 24 | 3 | 1127 | 1196 | 489 | 566 | 1.01e-12 | 76.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152540 | A0A072VR80 | 69.620 | 79 | 17 | 2 | 1125 | 1196 | 490 | 568 | 3.78e-16 | 96.3 |
Msa0152540 | A0A072VR80 | 90.383 | 1123 | 93 | 2 | 1 | 1123 | 1 | 1108 | 0.0 | 2099 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0152540 | Msa1438250 | 0.807926 | 3.982222e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152540 | MtrunA17_Chr1g0161491 | 90.383 | 1123 | 93 | 2 | 1 | 1123 | 15 | 1122 | 0.0 | 2097 |
Msa0152540 | MtrunA17_Chr1g0161491 | 69.620 | 79 | 17 | 2 | 1125 | 1196 | 504 | 582 | 7.34e-20 | 96.3 |
Msa0152540 | MtrunA17_Chr1g0161521 | 82.327 | 1126 | 183 | 2 | 1 | 1124 | 1 | 1112 | 0.0 | 1898 |
Msa0152540 | MtrunA17_Chr1g0161521 | 72.152 | 79 | 15 | 2 | 1125 | 1196 | 493 | 571 | 4.45e-21 | 100 |
Msa0152540 | MtrunA17_Chr1g0161471 | 82.535 | 1128 | 175 | 4 | 1 | 1123 | 1 | 1111 | 0.0 | 1893 |
Msa0152540 | MtrunA17_Chr1g0161471 | 84.211 | 76 | 8 | 1 | 1125 | 1196 | 496 | 571 | 6.69e-21 | 99.8 |
Msa0152540 | MtrunA17_Chr1g0161511 | 82.624 | 1128 | 177 | 4 | 1 | 1124 | 1 | 1113 | 0.0 | 1885 |
Msa0152540 | MtrunA17_Chr1g0161511 | 67.089 | 79 | 19 | 2 | 1125 | 1196 | 494 | 572 | 1.77e-18 | 91.7 |
Msa0152540 | MtrunA17_Chr1g0161451 | 54.056 | 1134 | 471 | 11 | 5 | 1116 | 3 | 1108 | 0.0 | 1218 |
Msa0152540 | MtrunA17_Chr1g0161451 | 58.228 | 79 | 24 | 3 | 1127 | 1196 | 483 | 561 | 3.36e-13 | 74.7 |
Msa0152540 | MtrunA17_Chr4g0059271 | 38.083 | 1158 | 622 | 23 | 3 | 1110 | 7 | 1119 | 0.0 | 752 |
Msa0152540 | MtrunA17_Chr3g0137841 | 36.902 | 1149 | 614 | 29 | 65 | 1133 | 81 | 1198 | 0.0 | 635 |
Msa0152540 | MtrunA17_Chr4g0059261 | 52.874 | 87 | 41 | 0 | 864 | 950 | 1 | 87 | 8.99e-21 | 90.1 |
Msa0152540 | MtrunA17_Chr6g0486821 | 22.624 | 663 | 369 | 29 | 507 | 1077 | 317 | 927 | 1.30e-14 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0152540 | AT1G14790.1 | 61.643 | 1108 | 397 | 10 | 4 | 1107 | 2 | 1085 | 0.0 | 1370 |
Msa0152540 | AT1G14790.1 | 58.974 | 78 | 24 | 3 | 1127 | 1196 | 489 | 566 | 1.03e-13 | 76.6 |
Msa0152540 | AT4G11130.1 | 37.805 | 1148 | 631 | 22 | 6 | 1110 | 11 | 1118 | 0.0 | 733 |
Msa0152540 | AT3G49500.3 | 36.515 | 1079 | 571 | 32 | 108 | 1106 | 126 | 1170 | 3.44e-178 | 557 |
Msa0152540 | AT3G49500.4 | 36.515 | 1079 | 571 | 32 | 108 | 1106 | 126 | 1170 | 3.44e-178 | 557 |
Msa0152540 | AT3G49500.1 | 36.515 | 1079 | 571 | 32 | 108 | 1106 | 126 | 1170 | 3.44e-178 | 557 |
Msa0152540 | AT3G49500.2 | 36.515 | 1079 | 571 | 32 | 108 | 1106 | 126 | 1170 | 3.44e-178 | 557 |
Msa0152540 | AT3G49500.5 | 36.515 | 1079 | 571 | 32 | 108 | 1106 | 126 | 1170 | 3.44e-178 | 557 |
Msa0152540 | AT2G19930.3 | 24.853 | 680 | 383 | 29 | 375 | 960 | 195 | 840 | 3.91e-25 | 113 |
Msa0152540 | AT2G19930.2 | 24.853 | 680 | 383 | 29 | 375 | 960 | 201 | 846 | 5.22e-25 | 113 |
Msa0152540 | AT2G19930.1 | 24.451 | 683 | 388 | 27 | 375 | 960 | 195 | 846 | 2.25e-24 | 111 |
Msa0152540 | AT2G19910.2 | 27.729 | 458 | 251 | 18 | 551 | 948 | 401 | 838 | 6.60e-21 | 100 |
Msa0152540 | AT2G19920.2 | 24.217 | 702 | 375 | 30 | 349 | 948 | 201 | 847 | 9.51e-20 | 96.3 |
Msa0152540 | AT2G19920.4 | 24.217 | 702 | 375 | 30 | 349 | 948 | 187 | 833 | 1.36e-19 | 95.9 |
Msa0152540 | AT2G19920.1 | 24.217 | 702 | 375 | 30 | 349 | 948 | 188 | 834 | 1.37e-19 | 95.9 |
Msa0152540 | AT2G19910.1 | 27.409 | 467 | 250 | 19 | 551 | 948 | 401 | 847 | 2.36e-19 | 95.1 |
Msa0152540 | AT2G19920.3 | 24.645 | 633 | 346 | 26 | 410 | 948 | 238 | 833 | 4.01e-19 | 94.4 |
Find 268 sgRNAs with CRISPR-Local
Find 424 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGATGCTGCAGACATTT+AGG | 0.140329 | 1_4:-15344015 | Msa0152540:CDS |
GTTCAGCACGGCTGTCTTTC+AGG | 0.142842 | 1_4:-15345201 | Msa0152540:CDS |
CATGGAAGTTGATGGATTTA+TGG | 0.158966 | 1_4:-15342080 | Msa0152540:CDS |
CTCTTCTGTTTGTAGTTAAT+TGG | 0.176066 | 1_4:-15345567 | Msa0152540:intron |
CCCATCATTGCTCTTCCTTT+TGG | 0.190630 | 1_4:+15343947 | None:intergenic |
GAAGATGTTAAACTGTATTT+TGG | 0.191458 | 1_4:-15346705 | Msa0152540:CDS |
AGCTTTCATATGAGAATATT+TGG | 0.191630 | 1_4:-15346557 | Msa0152540:CDS |
ATGGATGCTAGTGTAGATTT+TGG | 0.197478 | 1_4:-15346639 | Msa0152540:CDS |
TCCCAACTTCTCGTCATAAT+TGG | 0.203950 | 1_4:+15342027 | None:intergenic |
AGGAAAGATTCTCTGTATTA+TGG | 0.218992 | 1_4:-15346668 | Msa0152540:CDS |
ATGTAATTGGAAAGCTGTTT+AGG | 0.236792 | 1_4:-15342183 | Msa0152540:CDS |
TACAAATCAGATAATGTAAT+TGG | 0.245106 | 1_4:-15342196 | Msa0152540:CDS |
TGGCTTTCTCCTTCTTGATT+TGG | 0.249778 | 1_4:+15341690 | None:intergenic |
TAACGTAAAATTGGATGTTT+TGG | 0.250034 | 1_4:-15344281 | Msa0152540:CDS |
CATGAAATCTGGATATTCTT+TGG | 0.260088 | 1_4:+15342240 | None:intergenic |
CTATTTAAAAGTTACGAAAA+TGG | 0.261211 | 1_4:-15346772 | Msa0152540:CDS |
CGCATCCGCATCCCTTCTTT+TGG | 0.261948 | 1_4:+15341925 | None:intergenic |
TCCATCAGAGAAGACATATT+TGG | 0.262792 | 1_4:+15341133 | None:intergenic |
GAAACTAGAACCTTAGAATA+TGG | 0.263426 | 1_4:-15343914 | Msa0152540:CDS |
TGCAAAGTATCTATTGATTC+AGG | 0.268018 | 1_4:-15346502 | Msa0152540:intron |
GTCAAGAATAATTTCAATTT+CGG | 0.274237 | 1_4:+15341169 | None:intergenic |
GCTAGACTTGGGCAATCTTT+TGG | 0.280000 | 1_4:-15344577 | Msa0152540:CDS |
AATGATGCTGCAGACATTTA+GGG | 0.287232 | 1_4:-15344014 | Msa0152540:CDS |
GACATTCTTGCTCTCTTTCC+CGG | 0.296361 | 1_4:-15347198 | Msa0152540:five_prime_UTR |
ATCTCCCATCCATTCCCTTA+TGG | 0.297497 | 1_4:+15344633 | None:intergenic |
AACTAAGGCACATGAGGTTT+TGG | 0.300915 | 1_4:-15344122 | Msa0152540:CDS |
TATGTCTTCTCTGATGGAAT+TGG | 0.304418 | 1_4:-15341128 | Msa0152540:CDS |
ACTTACCATCATAGTTACTA+TGG | 0.312137 | 1_4:-15341782 | Msa0152540:CDS |
GAAAGAAATGGCTCAACATT+AGG | 0.318451 | 1_4:+15344037 | None:intergenic |
TGATTCAGATAACGTAAAAT+TGG | 0.321320 | 1_4:-15344290 | Msa0152540:CDS |
TGATCTTTCAGCCATCTTGC+AGG | 0.323580 | 1_4:+15345066 | None:intergenic |
TTCACTCCTTGCAGTTGTAT+TGG | 0.326260 | 1_4:-15345432 | Msa0152540:CDS |
TGTAATTGGAAAGCTGTTTA+GGG | 0.331666 | 1_4:-15342182 | Msa0152540:CDS |
GGGACATCTACTTTGTTTGT+TGG | 0.336396 | 1_4:-15343293 | Msa0152540:CDS |
ATGGTGTGTTTACCATTTGC+TGG | 0.336747 | 1_4:-15341714 | Msa0152540:CDS |
TAGAAGAATGCCGTTGGCTT+TGG | 0.337561 | 1_4:+15346735 | None:intergenic |
CAGTCATTCTCGTGTAGTTA+AGG | 0.343350 | 1_4:-15343855 | Msa0152540:CDS |
TCAGGCTTCTCCATGAAATC+TGG | 0.345090 | 1_4:+15342229 | None:intergenic |
TCACTCCTTGCAGTTGTATT+GGG | 0.345151 | 1_4:-15345431 | Msa0152540:CDS |
TTCTTCCCAACCTATTGTAT+TGG | 0.346101 | 1_4:-15343223 | Msa0152540:CDS |
TGCCGTCTCCCTTCCAGATT+CGG | 0.351921 | 1_4:-15341049 | Msa0152540:CDS |
TTGTTCAATATTCTAGCAAT+AGG | 0.353250 | 1_4:-15343883 | Msa0152540:CDS |
GGTGGGGCTGATGTAGATTC+TGG | 0.358182 | 1_4:-15341848 | Msa0152540:CDS |
CTCGCTACAACAACCGAATC+TGG | 0.359045 | 1_4:+15341036 | None:intergenic |
GGAAAGATTCTCTGTATTAT+GGG | 0.365847 | 1_4:-15346667 | Msa0152540:CDS |
ATAATTGGATTTGTGATAGA+AGG | 0.370562 | 1_4:+15342042 | None:intergenic |
GCACGGATCCATTGCTTATC+CGG | 0.370622 | 1_4:+15345462 | None:intergenic |
CAATATCTATGCCATTTCTA+AGG | 0.372511 | 1_4:+15344755 | None:intergenic |
ACATCCGGATTGCAAGAAAA+AGG | 0.372730 | 1_4:+15345294 | None:intergenic |
GGAAAACTTTGTTCATTATG+AGG | 0.373843 | 1_4:-15345352 | Msa0152540:CDS |
CGACTATATCTTTGGATAAC+GGG | 0.374346 | 1_4:-15345002 | Msa0152540:CDS |
CTTAGAAATGGCATAGATAT+TGG | 0.374817 | 1_4:-15344754 | Msa0152540:CDS |
ACGGCTGGGATACCGGTCTT+TGG | 0.375600 | 1_4:+15342283 | None:intergenic |
GCTGCTGACCCTTGTAGTTT+CGG | 0.378895 | 1_4:+15341193 | None:intergenic |
TCGGTCACCGACTATATCTT+TGG | 0.382147 | 1_4:-15345010 | Msa0152540:CDS |
TGCCATCTGCGTTTCAGATT+CGG | 0.383162 | 1_4:-15344393 | Msa0152540:CDS |
ACTGTCATTGAGTATATAAT+TGG | 0.384132 | 1_4:+15342417 | None:intergenic |
TCTTCACGTATTTCTGAGAA+TGG | 0.388273 | 1_4:-15344811 | Msa0152540:CDS |
AACTCCTCGCCTCTTTCCTT+AGG | 0.391172 | 1_4:+15341882 | None:intergenic |
GGACATCTACTTTGTTTGTT+GGG | 0.393937 | 1_4:-15343292 | Msa0152540:CDS |
TCACTTCCGGAACACTCGTT+TGG | 0.395235 | 1_4:+15343324 | None:intergenic |
ATTCTTTCCATCCTTAGAAA+TGG | 0.402135 | 1_4:-15344766 | Msa0152540:CDS |
TCGACAGACCTTGAGGAATC+CGG | 0.404706 | 1_4:+15347179 | None:intergenic |
ATGTTTGCTCGTGCAACAAC+CGG | 0.406004 | 1_4:-15344670 | Msa0152540:CDS |
CAAAGAATATCCAGATTTCA+TGG | 0.410069 | 1_4:-15342239 | Msa0152540:CDS |
AGAAATACGTGAAGATAAAT+CGG | 0.410629 | 1_4:+15344819 | None:intergenic |
CACTGACTTCAAATAGTTTG+AGG | 0.416771 | 1_4:-15347261 | Msa0152540:five_prime_UTR |
GCTAAATATGCTGCTAGACT+TGG | 0.420071 | 1_4:-15344589 | Msa0152540:CDS |
ATTTAGGGCATCAAAGTTGT+TGG | 0.421669 | 1_4:-15343999 | Msa0152540:CDS |
AAACTAGAACCTTAGAATAT+GGG | 0.421804 | 1_4:-15343913 | Msa0152540:CDS |
ATCCAATTATGACGAGAAGT+TGG | 0.422789 | 1_4:-15342029 | Msa0152540:CDS |
TCCATCAGAGAAGACATATT+CGG | 0.427902 | 1_4:+15344477 | None:intergenic |
CAGAGATTAATGTCTCAAAT+CGG | 0.428075 | 1_4:-15344924 | Msa0152540:CDS |
ACTTTAAACAAGATGTGAAA+TGG | 0.429644 | 1_4:+15345234 | None:intergenic |
CTTGTTTAAAGTTAATTCCT+TGG | 0.431052 | 1_4:-15345223 | Msa0152540:CDS |
ACCATGGAAAGCTTAGAAAA+TGG | 0.431302 | 1_4:+15341732 | None:intergenic |
ACATCATGATCCAATACAAT+AGG | 0.434504 | 1_4:+15343213 | None:intergenic |
GGCTCACTGCCGATTCCATA+AGG | 0.435797 | 1_4:-15344648 | Msa0152540:CDS |
TGCAGCATCATTGAAAGAAA+TGG | 0.437283 | 1_4:+15344025 | None:intergenic |
TCCAAAAGGAAGAGCAATGA+TGG | 0.437443 | 1_4:-15343948 | Msa0152540:CDS |
TTAGATACACTTGTTGATGT+AGG | 0.439715 | 1_4:+15345516 | None:intergenic |
CCGACTATATCTTTGGATAA+CGG | 0.440826 | 1_4:-15345003 | Msa0152540:CDS |
CCATGTTTAACCTTCGCGTC+AGG | 0.441759 | 1_4:+15344505 | None:intergenic |
ATGTCTTCTCTGATGGAATT+GGG | 0.442636 | 1_4:-15341127 | Msa0152540:CDS |
AGTTGATCCACTCAGAATAA+AGG | 0.443637 | 1_4:-15345148 | Msa0152540:CDS |
CGAAATATTTCACCAAAAGA+AGG | 0.444980 | 1_4:-15341937 | Msa0152540:CDS |
GTCCCCGTCTAGATCACTTC+CGG | 0.446184 | 1_4:+15343311 | None:intergenic |
GGCTCAGACATTGCTTTAGC+AGG | 0.447457 | 1_4:+15342349 | None:intergenic |
ATCCAGTGTAAAAGATGTAA+TGG | 0.451374 | 1_4:+15342129 | None:intergenic |
TCCAATTATGACGAGAAGTT+GGG | 0.452148 | 1_4:-15342028 | Msa0152540:CDS |
TCCACCATGTGGCGCAAAGC+TGG | 0.452967 | 1_4:+15343761 | None:intergenic |
AAAAGAGTTGGCATTGAAGA+TGG | 0.454789 | 1_4:-15347066 | Msa0152540:exon |
TGTACAATGAAGGTATGAAA+AGG | 0.454846 | 1_4:-15341757 | Msa0152540:CDS |
ACTAGGATATTTATTCCAAA+AGG | 0.454891 | 1_4:-15343962 | Msa0152540:CDS |
TTGGGATTGGATTGAGAAAG+TGG | 0.455481 | 1_4:-15346620 | Msa0152540:CDS |
ACCAAATATGTCTTCTCTGA+TGG | 0.456825 | 1_4:-15341134 | Msa0152540:CDS |
CTCTGTATTATGGGGAAAGA+TGG | 0.458753 | 1_4:-15346658 | Msa0152540:CDS |
ACATTTGTAGAGCAGTATAC+TGG | 0.461229 | 1_4:-15346981 | Msa0152540:CDS |
CACGGATCCATTGCTTATCC+GGG | 0.461366 | 1_4:+15345463 | None:intergenic |
GGATGCGGATGCGATTACTA+TGG | 0.463056 | 1_4:-15341915 | Msa0152540:CDS |
TCTTGATTTGGACCAGCAAA+TGG | 0.465226 | 1_4:+15341702 | None:intergenic |
CATCCATTCCCTTATGGAAT+CGG | 0.466701 | 1_4:+15344639 | None:intergenic |
AGTCATTCTCGTGTAGTTAA+GGG | 0.468250 | 1_4:-15343854 | Msa0152540:CDS |
TATGTCTTCTCTGATGGAAT+CGG | 0.469620 | 1_4:-15344472 | Msa0152540:CDS |
TACTATGGTTTGTACAATGA+AGG | 0.470404 | 1_4:-15341767 | Msa0152540:CDS |
AGGTATAACGGCTGGGATAC+CGG | 0.471391 | 1_4:+15342276 | None:intergenic |
ACTCCTCGCCTCTTTCCTTA+GGG | 0.475778 | 1_4:+15341883 | None:intergenic |
GCAACCATGGGAACAACATC+CGG | 0.476437 | 1_4:+15345279 | None:intergenic |
CCGGAACACTCGTTTGGATG+TGG | 0.476825 | 1_4:+15343330 | None:intergenic |
AAATATCTCTTGAACTTGCC+AGG | 0.478082 | 1_4:-15341103 | Msa0152540:CDS |
AAATATCTCTTGAACTTGCC+AGG | 0.478082 | 1_4:-15344447 | Msa0152540:CDS |
TCTACAAATGTCTTTACATC+AGG | 0.480962 | 1_4:+15346993 | None:intergenic |
CTTCACGTATTTCTGAGAAT+GGG | 0.480988 | 1_4:-15344810 | Msa0152540:CDS |
AGAAAAGTTGTACTATTCAA+AGG | 0.481118 | 1_4:-15345103 | Msa0152540:CDS |
GGAAATCTGATGGACTACTA+TGG | 0.482352 | 1_4:-15342007 | Msa0152540:CDS |
ATCTATGCCATTTCTAAGGA+TGG | 0.483375 | 1_4:+15344759 | None:intergenic |
GTGGGGCTGATGTAGATTCT+GGG | 0.483416 | 1_4:-15341847 | Msa0152540:CDS |
GATCCCGACATGGAAGTTGA+TGG | 0.485605 | 1_4:-15342088 | Msa0152540:CDS |
AGTAAAACAATTAAGTTGCA+TGG | 0.485965 | 1_4:-15347038 | Msa0152540:CDS |
TTCGGAAAATCTCTGTTACT+AGG | 0.486188 | 1_4:+15345381 | None:intergenic |
TTCATTTGTCGACGAGGAGT+TGG | 0.486795 | 1_4:-15344857 | Msa0152540:CDS |
AATCCATCAACTTCCATGTC+GGG | 0.487077 | 1_4:+15342085 | None:intergenic |
AGATTACCAGGTATAACGGC+TGG | 0.487390 | 1_4:+15342268 | None:intergenic |
CCGAAACTCTAAGCGTCAAA+AGG | 0.488524 | 1_4:-15344546 | Msa0152540:CDS |
ACGGGTTGGTATATGTTCGC+AGG | 0.489662 | 1_4:-15344984 | Msa0152540:CDS |
CCACATCCAAACGAGTGTTC+CGG | 0.490224 | 1_4:-15343330 | Msa0152540:CDS |
AACATCGCCCTGGTGCAAGC+AGG | 0.491640 | 1_4:+15343808 | None:intergenic |
TTTAATGGTGCAGGAGGTGG+AGG | 0.492095 | 1_4:-15342449 | Msa0152540:intron |
ATGATCCAATACAATAGGTT+GGG | 0.494319 | 1_4:+15343218 | None:intergenic |
ACCGAATATGTCTTCTCTGA+TGG | 0.497328 | 1_4:-15344478 | Msa0152540:CDS |
GTTCCTCTACCGAAACTACA+AGG | 0.497463 | 1_4:-15341202 | Msa0152540:CDS |
CGATTCCATAAGGGAATGGA+TGG | 0.497905 | 1_4:-15344638 | Msa0152540:CDS |
TATATACTCAATGACAGTCT+TGG | 0.498477 | 1_4:-15342412 | Msa0152540:CDS |
TTCTCGTGTAGTTAAGGGTA+TGG | 0.502945 | 1_4:-15343849 | Msa0152540:CDS |
CCCATGGTTGCTCCTCCTCA+AGG | 0.503965 | 1_4:-15345267 | Msa0152540:CDS |
CGAGAAGTTGGGAAATCTGA+TGG | 0.504341 | 1_4:-15342017 | Msa0152540:CDS |
GCAGTTGACTTTCCAAAGAC+CGG | 0.509499 | 1_4:-15342295 | Msa0152540:CDS |
TATGGAATCGGCAGTGAGCC+CGG | 0.510215 | 1_4:+15344651 | None:intergenic |
CGATTTGAGACATTAATCTC+TGG | 0.510436 | 1_4:+15344925 | None:intergenic |
TTGTCGTCAATGTCAACGTC+AGG | 0.512091 | 1_4:+15347223 | None:intergenic |
GGAGTTGGTTCAAGGACGGT+GGG | 0.515916 | 1_4:-15341865 | Msa0152540:CDS |
AGAGATTAATGTCTCAAATC+GGG | 0.515941 | 1_4:-15344923 | Msa0152540:CDS |
CTCCATTGGATCAATTGTCA+TGG | 0.517675 | 1_4:+15343251 | None:intergenic |
TGGAACAAAGTTTCAGTCGC+AGG | 0.517680 | 1_4:-15341646 | Msa0152540:intron |
GACCCTTGTAGTTTCGGTAG+AGG | 0.518386 | 1_4:+15341199 | None:intergenic |
CGTTTCAGATTCGGTATGGC+GGG | 0.519372 | 1_4:-15344384 | Msa0152540:CDS |
AGGAGTTGGTTCAAGGACGG+TGG | 0.520986 | 1_4:-15341866 | Msa0152540:CDS |
GTACAATGAAGGTATGAAAA+GGG | 0.521264 | 1_4:-15341756 | Msa0152540:CDS |
TCTCTTTCCCGGATTCCTCA+AGG | 0.521773 | 1_4:-15347187 | Msa0152540:intron |
CGACAGACCTTGAGGAATCC+GGG | 0.522205 | 1_4:+15347180 | None:intergenic |
GTTCCGGAAGTGATCTAGAC+GGG | 0.525385 | 1_4:-15343314 | Msa0152540:CDS |
CTAAATATGCTGCTAGACTT+GGG | 0.526193 | 1_4:-15344588 | Msa0152540:CDS |
CATGATCCAATACAATAGGT+TGG | 0.528368 | 1_4:+15343217 | None:intergenic |
CTATGGCTGTAAGGTCCCTA+AGG | 0.529617 | 1_4:-15341898 | Msa0152540:CDS |
AGATCATGCTACATATATGA+TGG | 0.530126 | 1_4:-15346832 | Msa0152540:CDS |
GGATCATGATGTTGAGATTG+AGG | 0.532865 | 1_4:-15343202 | Msa0152540:intron |
GCTCACTGCCGATTCCATAA+GGG | 0.535707 | 1_4:-15344647 | Msa0152540:CDS |
AGAGGCGAGGAGTTGGTTCA+AGG | 0.537281 | 1_4:-15341873 | Msa0152540:CDS |
ACCCATGACAATTGATCCAA+TGG | 0.540648 | 1_4:-15343253 | Msa0152540:CDS |
ACATCGCCCTGGTGCAAGCA+GGG | 0.540915 | 1_4:+15343809 | None:intergenic |
ATGCGATTACTATGGCTGTA+AGG | 0.542526 | 1_4:-15341907 | Msa0152540:CDS |
CAATCCGGATGTTGTTCCCA+TGG | 0.542528 | 1_4:-15345283 | Msa0152540:CDS |
TATAGGAAAATCAAAAGAGT+TGG | 0.542790 | 1_4:-15347078 | Msa0152540:intron |
GTTTGAACTTCTTATCGTCA+TGG | 0.543349 | 1_4:+15346583 | None:intergenic |
TAAGGAAAGAGGCGAGGAGT+TGG | 0.543723 | 1_4:-15341880 | Msa0152540:CDS |
TGCAAAGACTGTGTGTGCAT+TGG | 0.543894 | 1_4:+15342381 | None:intergenic |
CAAGAAATTTCAACAAAGGA+CGG | 0.544199 | 1_4:-15342154 | Msa0152540:CDS |
ATTCGGTATGGCGGGTACAA+AGG | 0.545736 | 1_4:-15344376 | Msa0152540:CDS |
GCGCAAAGCTGGCACATCCA+CGG | 0.545974 | 1_4:+15343772 | None:intergenic |
TATATCTTTGGATAACGGGT+TGG | 0.546193 | 1_4:-15344998 | Msa0152540:CDS |
GCTAGAATGCATCCTCATCA+TGG | 0.546595 | 1_4:+15341670 | None:intergenic |
GAGAATATTAGTGACTTCAC+CGG | 0.548250 | 1_4:+15344087 | None:intergenic |
CAATATGTTGATGGAAATGA+CGG | 0.550215 | 1_4:+15344896 | None:intergenic |
CTGCCGATTCCATAAGGGAA+TGG | 0.552932 | 1_4:-15344642 | Msa0152540:CDS |
CCACAAAAGTATACTTTGCA+TGG | 0.555207 | 1_4:+15344949 | None:intergenic |
TGGGAAGAATCATACTCCAT+TGG | 0.555316 | 1_4:+15343237 | None:intergenic |
GGTATCCCAGCCGTTATACC+TGG | 0.559252 | 1_4:-15342274 | Msa0152540:CDS |
CTTATCCACTCTTGATGTCA+AGG | 0.563615 | 1_4:-15344209 | Msa0152540:CDS |
AACTCAACCTTTATTCTGAG+TGG | 0.564774 | 1_4:+15345141 | None:intergenic |
TCCTTGAGGAGGAGCAACCA+TGG | 0.565876 | 1_4:+15345266 | None:intergenic |
TCTGCGTTTCAGATTCGGTA+TGG | 0.566297 | 1_4:-15344388 | Msa0152540:CDS |
TGAAATTATTCCTGACGCGA+AGG | 0.567517 | 1_4:-15344515 | Msa0152540:CDS |
TCAGGCACGGTGACATGATG+AGG | 0.567959 | 1_4:+15347011 | None:intergenic |
AAATCCATCAACTTCCATGT+CGG | 0.570409 | 1_4:+15342084 | None:intergenic |
AGCTTTGCAAGCTCAATACA+TGG | 0.573294 | 1_4:+15342328 | None:intergenic |
GAAATATTTCACCAAAAGAA+GGG | 0.573777 | 1_4:-15341936 | Msa0152540:CDS |
CGGGTTGGTATATGTTCGCA+GGG | 0.575499 | 1_4:-15344983 | Msa0152540:CDS |
GATACTAACAGATTCAACTA+AGG | 0.575676 | 1_4:-15344137 | Msa0152540:CDS |
GTTCATTATGAGGAAATCGA+GGG | 0.575939 | 1_4:-15345342 | Msa0152540:CDS |
GAGATTTGTTCAAATTCGAA+CGG | 0.576394 | 1_4:-15346883 | Msa0152540:CDS |
CTACAACAACCGAATCTGGA+AGG | 0.576730 | 1_4:+15341040 | None:intergenic |
TGTTCATTATGAGGAAATCG+AGG | 0.578092 | 1_4:-15345343 | Msa0152540:CDS |
GACAACTTCACAGACGAGGT+TGG | 0.580619 | 1_4:+15344337 | None:intergenic |
ACAAACCATAGTAACTATGA+TGG | 0.581319 | 1_4:+15341777 | None:intergenic |
ACTGAATCAGAAATCCTAAG+TGG | 0.581610 | 1_4:-15341977 | Msa0152540:CDS |
TGTAAGGTCCCTAAGGAAAG+AGG | 0.581946 | 1_4:-15341891 | Msa0152540:CDS |
TATATGCAAAAGCTTCTGCT+TGG | 0.581961 | 1_4:-15341814 | Msa0152540:CDS |
AACTAGAACCTTAGAATATG+GGG | 0.582040 | 1_4:-15343912 | Msa0152540:CDS |
TTTCACCAAAAGAAGGGATG+CGG | 0.582713 | 1_4:-15341930 | Msa0152540:CDS |
AACCGAATCTGGAAGGGAGA+CGG | 0.583445 | 1_4:+15341047 | None:intergenic |
TCTGTTATGAACCTGCAAGA+TGG | 0.584270 | 1_4:-15345077 | Msa0152540:CDS |
TCCATTGGATCAATTGTCAT+GGG | 0.585286 | 1_4:+15343252 | None:intergenic |
TGTGCCAGCTTTGCGCCACA+TGG | 0.587567 | 1_4:-15343765 | Msa0152540:CDS |
CCGTTATCCAAAGATATAGT+CGG | 0.588330 | 1_4:+15345003 | None:intergenic |
AGTTGCGTGAAAACTCGCTA+TGG | 0.589305 | 1_4:-15344693 | Msa0152540:CDS |
AATTCAAGAAATTTCAACAA+AGG | 0.589467 | 1_4:-15342158 | Msa0152540:CDS |
GGTATTTGAATTCCTTGAGG+AGG | 0.592430 | 1_4:+15345255 | None:intergenic |
GAACTATTACAGAGATTCCC+CGG | 0.593230 | 1_4:-15345481 | Msa0152540:CDS |
GAGATTCCCCGGATAAGCAA+TGG | 0.594419 | 1_4:-15345470 | Msa0152540:CDS |
TGAAGTCACTAATATTCTCA+AGG | 0.594963 | 1_4:-15344083 | Msa0152540:CDS |
AATCTGTAGAAGAATGCCGT+TGG | 0.595869 | 1_4:+15346729 | None:intergenic |
TCAAAACACGAACATCGCCC+TGG | 0.596110 | 1_4:+15343798 | None:intergenic |
TACCGAATCTGAAACGCAGA+TGG | 0.597963 | 1_4:+15344391 | None:intergenic |
GTTAATTCCTTGGTTCAGCA+CGG | 0.599114 | 1_4:-15345213 | Msa0152540:CDS |
GATGAGGATGCATTCTAGCA+TGG | 0.601811 | 1_4:-15341666 | Msa0152540:CDS |
CCAAAAGGAAGAGCAATGAT+GGG | 0.604423 | 1_4:-15343947 | Msa0152540:CDS |
GCGTTTCAGATTCGGTATGG+CGG | 0.606083 | 1_4:-15344385 | Msa0152540:CDS |
GATTACCAGGTATAACGGCT+GGG | 0.606962 | 1_4:+15342269 | None:intergenic |
AGAAATGGCATAGATATTGG+TGG | 0.607871 | 1_4:-15344751 | Msa0152540:CDS |
GAAAGATTCTCTGTATTATG+GGG | 0.608306 | 1_4:-15346666 | Msa0152540:CDS |
TGTTTGCTCGTGCAACAACC+GGG | 0.609914 | 1_4:-15344669 | Msa0152540:CDS |
TCTTGAACTTGCCAGGAGAG+TGG | 0.610132 | 1_4:-15344440 | Msa0152540:CDS |
AGATTCAACTAAGGCACATG+AGG | 0.610998 | 1_4:-15344128 | Msa0152540:CDS |
AAGACAGCCGTGCTGAACCA+AGG | 0.611534 | 1_4:+15345206 | None:intergenic |
CCTTGAGGAGGAGCAACCAT+GGG | 0.613313 | 1_4:+15345267 | None:intergenic |
ATTGGATCAATTGTCATGGG+TGG | 0.613821 | 1_4:+15343255 | None:intergenic |
GCCAGCTTTGCGCCACATGG+TGG | 0.616294 | 1_4:-15343762 | Msa0152540:CDS |
TCTTGAACTTGCCAGGAGAG+TGG | 0.617568 | 1_4:-15341096 | Msa0152540:CDS |
AATGGTATTTGAATTCCTTG+AGG | 0.617830 | 1_4:+15345252 | None:intergenic |
CTGAATCAGAAATCCTAAGT+GGG | 0.618883 | 1_4:-15341976 | Msa0152540:CDS |
GATATAGTCGGTGACCGAGG+CGG | 0.624049 | 1_4:+15345015 | None:intergenic |
TACAACAACCGAATCTGGAA+GGG | 0.624487 | 1_4:+15341041 | None:intergenic |
AGGAATCTTTAGACATATAG+CGG | 0.630016 | 1_4:+15345401 | None:intergenic |
ACTGTCCTTGACATCAAGAG+TGG | 0.630808 | 1_4:+15344204 | None:intergenic |
AAAGATATAGTCGGTGACCG+AGG | 0.632533 | 1_4:+15345012 | None:intergenic |
AGAAGGAGAAAGCCATGATG+AGG | 0.633781 | 1_4:-15341682 | Msa0152540:CDS |
AGATTGAACTGCATCAACCA+TGG | 0.634369 | 1_4:-15346533 | Msa0152540:CDS |
CAGGCACGGTGACATGATGA+GGG | 0.635211 | 1_4:+15347012 | None:intergenic |
TTTGCTGGTCCAAATCAAGA+AGG | 0.636907 | 1_4:-15341699 | Msa0152540:CDS |
AATTGTCGATTGAGATAACA+AGG | 0.636922 | 1_4:+15344241 | None:intergenic |
CCTGACGCGAAGGTTAAACA+TGG | 0.640840 | 1_4:-15344505 | Msa0152540:CDS |
AGATATTGATCCAAAGCCAA+CGG | 0.640968 | 1_4:-15346745 | Msa0152540:CDS |
TCTCTGTAATAGTTCTTCAG+AGG | 0.641395 | 1_4:+15345489 | None:intergenic |
AATCGAGGGTCAATACACAT+TGG | 0.643950 | 1_4:-15345328 | Msa0152540:CDS |
AGCAAATGGTAAACACACCA+TGG | 0.644967 | 1_4:+15341716 | None:intergenic |
GGTCAATACACATTGGAGAG+AGG | 0.645380 | 1_4:-15345321 | Msa0152540:CDS |
GCGAGGAGTTGGTTCAAGGA+CGG | 0.645881 | 1_4:-15341869 | Msa0152540:CDS |
TCAGTGCAAATAATCCGCCT+CGG | 0.645936 | 1_4:-15345029 | Msa0152540:CDS |
GACTGCCCAATACAACTGCA+AGG | 0.646493 | 1_4:+15345426 | None:intergenic |
AAGGAGTGAAATCTATCGCA+CGG | 0.647159 | 1_4:+15345445 | None:intergenic |
TGTTCCGGAAGTGATCTAGA+CGG | 0.654419 | 1_4:-15343315 | Msa0152540:CDS |
GAGTTGGTTCAAGGACGGTG+GGG | 0.658089 | 1_4:-15341864 | Msa0152540:CDS |
AAATGTCTTTACATCAGGCA+CGG | 0.659012 | 1_4:+15346998 | None:intergenic |
GGTCCCTAAGGAAAGAGGCG+AGG | 0.663632 | 1_4:-15341886 | Msa0152540:CDS |
CAGTGACAACTTCACAGACG+AGG | 0.667927 | 1_4:+15344333 | None:intergenic |
ACGGATCCATTGCTTATCCG+GGG | 0.669619 | 1_4:+15345464 | None:intergenic |
TGGCGGGTACAAAGGAGTCG+TGG | 0.670307 | 1_4:-15344368 | Msa0152540:CDS |
ACGTGTTTCATTTGTCGACG+AGG | 0.677225 | 1_4:-15344863 | Msa0152540:CDS |
GATTCCATAAGGGAATGGAT+GGG | 0.679529 | 1_4:-15344637 | Msa0152540:CDS |
GTATACTGGTGAAGAAAGCG+TGG | 0.682714 | 1_4:-15346967 | Msa0152540:CDS |
TTCCTCTACCGAAACTACAA+GGG | 0.683599 | 1_4:-15341201 | Msa0152540:CDS |
ATATGTAGCATGATCTGTAG+TGG | 0.696738 | 1_4:+15346839 | None:intergenic |
TATATGATGGCCTTACGTAG+CGG | 0.700749 | 1_4:-15346819 | Msa0152540:CDS |
AAACAACACAATCCACCATG+TGG | 0.707365 | 1_4:+15343750 | None:intergenic |
AAAGTCGTATGATCCCGACA+TGG | 0.712915 | 1_4:-15342098 | Msa0152540:CDS |
TTCCGGAAGTGATCTAGACG+GGG | 0.717127 | 1_4:-15343313 | Msa0152540:CDS |
CGTCTGTGAAGTTGTCACTG+AGG | 0.737656 | 1_4:-15344330 | Msa0152540:CDS |
GAGGCGGATTATTTGCACTG+AGG | 0.762972 | 1_4:+15345031 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATAAAATTTAAAATAAAAA+AGG | + | chr1_4:15341906-15341925 | None:intergenic | 0.0% |
!! | AATAATTCAAAAAAAGAAAA+TGG | + | chr1_4:15341222-15341241 | None:intergenic | 10.0% |
!!! | ATGTTTATTTTTAGAAAGTA+AGG | + | chr1_4:15342593-15342612 | None:intergenic | 15.0% |
!! | ACAAATAAGATTTATCATAT+GGG | + | chr1_4:15342747-15342766 | None:intergenic | 15.0% |
!! | AACAAATAAGATTTATCATA+TGG | + | chr1_4:15342748-15342767 | None:intergenic | 15.0% |
!! | AAAAATTATCAATATGTTGA+TGG | + | chr1_4:15343452-15343471 | None:intergenic | 15.0% |
!!! | ATATTATTTTGACAAAAGAA+TGG | - | chr1_4:15344887-15344906 | Msa0152540:CDS | 15.0% |
!! | TATAAAAAAATGACAAAAGA+GGG | + | chr1_4:15344944-15344963 | None:intergenic | 15.0% |
!! | TTATAAAAAAATGACAAAAG+AGG | + | chr1_4:15344945-15344964 | None:intergenic | 15.0% |
!! | CTTCATAATATAATATACAA+AGG | + | chr1_4:15346828-15346847 | None:intergenic | 15.0% |
!! | CTTTGTATATTATATTATGA+AGG | - | chr1_4:15346826-15346845 | Msa0152540:CDS | 15.0% |
!!! | CATTTTCGTAACTTTTAAAT+AGG | + | chr1_4:15341566-15341585 | None:intergenic | 20.0% |
!! | CTATTTAAAAGTTACGAAAA+TGG | - | chr1_4:15341564-15341583 | Msa0152540:intron | 20.0% |
!!! | TGATTTTTTATGAACAATGT+TGG | - | chr1_4:15342084-15342103 | Msa0152540:CDS | 20.0% |
!!! | CAATGTTGGTTTTTTTTTTT+TGG | - | chr1_4:15342098-15342117 | Msa0152540:CDS | 20.0% |
!!! | TTTTTTTTTTTGGTGTAAAC+CGG | - | chr1_4:15342108-15342127 | Msa0152540:CDS | 20.0% |
!!! | ATTGATTTATGATACATCTA+TGG | - | chr1_4:15342198-15342217 | Msa0152540:CDS | 20.0% |
!!! | ATTTAGCCACATTTTTTATA+CGG | + | chr1_4:15343734-15343753 | None:intergenic | 20.0% |
!!! | CTTTTCTTGTATTTTTTGTA+TGG | - | chr1_4:15345189-15345208 | Msa0152540:CDS | 20.0% |
!!! | CTTGATTTTGTTTTTCTTTT+CGG | - | chr1_4:15345379-15345398 | Msa0152540:CDS | 20.0% |
!! | CTTAATTAAGTATTCAAACA+AGG | - | chr1_4:15345847-15345866 | Msa0152540:intron | 20.0% |
!! | TACAAATCAGATAATGTAAT+TGG | - | chr1_4:15346140-15346159 | Msa0152540:intron | 20.0% |
!! | AATTCAAGAAATTTCAACAA+AGG | - | chr1_4:15346178-15346197 | Msa0152540:intron | 20.0% |
!!! | ACTTTTCATGTAGATATTTA+TGG | - | chr1_4:15346750-15346769 | Msa0152540:CDS | 20.0% |
!!! | ATTTAGCTACATTTTTTATC+CGG | + | chr1_4:15347099-15347118 | None:intergenic | 20.0% |
!! | GTCAAGAATAATTTCAATTT+CGG | + | chr1_4:15347170-15347189 | None:intergenic | 20.0% |
!!! | AGAATCATAATCACATTTTT+TGG | + | chr1_4:15347266-15347285 | None:intergenic | 20.0% |
! | AATGGTATATCTAAGAAAGA+AGG | + | chr1_4:15341204-15341223 | None:intergenic | 25.0% |
!! | TTGATTTTCCTATATAGGAT+TGG | + | chr1_4:15341252-15341271 | None:intergenic | 25.0% |
!!! | CTCTTTTGATTTTCCTATAT+AGG | + | chr1_4:15341257-15341276 | None:intergenic | 25.0% |
! | TATAGGAAAATCAAAAGAGT+TGG | - | chr1_4:15341258-15341277 | Msa0152540:intron | 25.0% |
!! | AGTAAAACAATTAAGTTGCA+TGG | - | chr1_4:15341298-15341317 | Msa0152540:intron | 25.0% |
!! | GAAGATGTTAAACTGTATTT+TGG | - | chr1_4:15341631-15341650 | Msa0152540:intron | 25.0% |
! | AGCTTTCATATGAGAATATT+TGG | - | chr1_4:15341779-15341798 | Msa0152540:CDS | 25.0% |
! | AAAAAGGAAAATGAAGAACA+TGG | + | chr1_4:15341890-15341909 | None:intergenic | 25.0% |
!! | TGTCATGATATATCTGATTT+TGG | - | chr1_4:15342024-15342043 | Msa0152540:CDS | 25.0% |
!!! | TTTTTTTTTTGGTGTAAACC+GGG | - | chr1_4:15342109-15342128 | Msa0152540:CDS | 25.0% |
! | ACTTTAAACAAGATGTGAAA+TGG | + | chr1_4:15343105-15343124 | None:intergenic | 25.0% |
!! | CTTGTTTAAAGTTAATTCCT+TGG | - | chr1_4:15343113-15343132 | Msa0152540:intron | 25.0% |
! | AGAAAAGTTGTACTATTCAA+AGG | - | chr1_4:15343233-15343252 | Msa0152540:CDS | 25.0% |
! | AGAAATACGTGAAGATAAAT+CGG | + | chr1_4:15343520-15343539 | None:intergenic | 25.0% |
!! | TTTTAGCCGTATAAAAAATG+TGG | - | chr1_4:15343725-15343744 | Msa0152540:intron | 25.0% |
! | TGATTCAGATAACGTAAAAT+TGG | - | chr1_4:15344046-15344065 | Msa0152540:CDS | 25.0% |
!! | TAACGTAAAATTGGATGTTT+TGG | - | chr1_4:15344055-15344074 | Msa0152540:CDS | 25.0% |
! | ACTAGGATATTTATTCCAAA+AGG | - | chr1_4:15344374-15344393 | Msa0152540:CDS | 25.0% |
! | AAACTAGAACCTTAGAATAT+GGG | - | chr1_4:15344423-15344442 | Msa0152540:CDS | 25.0% |
! | TTGTTCAATATTCTAGCAAT+AGG | - | chr1_4:15344453-15344472 | Msa0152540:CDS | 25.0% |
! | GGTATTAGAAATCAAGTTAT+CGG | + | chr1_4:15344983-15345002 | None:intergenic | 25.0% |
! | ATAACTTGATTTCTAATACC+AGG | - | chr1_4:15344983-15345002 | Msa0152540:CDS | 25.0% |
!!! | ATTTTGTTTTTCTTTTCGGT+AGG | - | chr1_4:15345383-15345402 | Msa0152540:CDS | 25.0% |
!! | ATCTAAAACAAGATATGTCA+AGG | + | chr1_4:15345432-15345451 | None:intergenic | 25.0% |
! | ACTGCTAATGTAAAAAACAT+AGG | + | chr1_4:15345563-15345582 | None:intergenic | 25.0% |
! | ACTGTCATTGAGTATATAAT+TGG | + | chr1_4:15345922-15345941 | None:intergenic | 25.0% |
! | AAAAAGATTACCAGGTATAA+CGG | + | chr1_4:15346075-15346094 | None:intergenic | 25.0% |
! | ATAATTGGATTTGTGATAGA+AGG | + | chr1_4:15346297-15346316 | None:intergenic | 25.0% |
!! | TTTTCATAATATTCCCACTT+AGG | + | chr1_4:15346376-15346395 | None:intergenic | 25.0% |
! | GAAATATTTCACCAAAAGAA+GGG | - | chr1_4:15346400-15346419 | Msa0152540:intron | 25.0% |
! | TCATTAGTCGTATTATTCAT+TGG | - | chr1_4:15346920-15346939 | Msa0152540:CDS | 25.0% |
! | GTGTGAAAAGTTAATTGATA+TGG | - | chr1_4:15346972-15346991 | Msa0152540:CDS | 25.0% |
TTTCTTCTCCAATCCTATAT+AGG | - | chr1_4:15341241-15341260 | Msa0152540:CDS | 30.0% | |
TCTACAAATGTCTTTACATC+AGG | + | chr1_4:15341346-15341365 | None:intergenic | 30.0% | |
! | GAGATTTGTTCAAATTCGAA+CGG | - | chr1_4:15341453-15341472 | Msa0152540:intron | 30.0% |
AGATCATGCTACATATATGA+TGG | - | chr1_4:15341504-15341523 | Msa0152540:intron | 30.0% | |
AGGAAAGATTCTCTGTATTA+TGG | - | chr1_4:15341668-15341687 | Msa0152540:CDS | 30.0% | |
GGAAAGATTCTCTGTATTAT+GGG | - | chr1_4:15341669-15341688 | Msa0152540:CDS | 30.0% | |
GAAAGATTCTCTGTATTATG+GGG | - | chr1_4:15341670-15341689 | Msa0152540:CDS | 30.0% | |
!!! | TACTTTGCAGTTTTAAACCA+TGG | + | chr1_4:15341823-15341842 | None:intergenic | 30.0% |
!! | TGCAAAGTATCTATTGATTC+AGG | - | chr1_4:15341834-15341853 | Msa0152540:CDS | 30.0% |
! | TTTTTGCTCCATATGAACTA+TGG | - | chr1_4:15341963-15341982 | Msa0152540:CDS | 30.0% |
ATGGCTATAGTAAGATTTGA+AGG | - | chr1_4:15342217-15342236 | Msa0152540:CDS | 30.0% | |
TATGCAGTGGTAATAAAGTT+TGG | + | chr1_4:15342392-15342411 | None:intergenic | 30.0% | |
AAACTTTATTACCACTGCAT+AGG | - | chr1_4:15342391-15342410 | Msa0152540:CDS | 30.0% | |
GAAATAAAAATTGCTGCTGT+TGG | + | chr1_4:15342552-15342571 | None:intergenic | 30.0% | |
AAAGTTGAAGAGAGCAAAAT+TGG | + | chr1_4:15342658-15342677 | None:intergenic | 30.0% | |
CTCTTCTGTTTGTAGTTAAT+TGG | - | chr1_4:15342769-15342788 | Msa0152540:intron | 30.0% | |
! | TTAGATACACTTGTTGATGT+AGG | + | chr1_4:15342823-15342842 | None:intergenic | 30.0% |
AGGAATCTTTAGACATATAG+CGG | + | chr1_4:15342938-15342957 | None:intergenic | 30.0% | |
! | ACAAAGTTTTCCCTGAAATT+CGG | + | chr1_4:15342976-15342995 | None:intergenic | 30.0% |
GGAAAACTTTGTTCATTATG+AGG | - | chr1_4:15342984-15343003 | Msa0152540:intron | 30.0% | |
AATGGTATTTGAATTCCTTG+AGG | + | chr1_4:15343087-15343106 | None:intergenic | 30.0% | |
CAGAGATTAATGTCTCAAAT+CGG | - | chr1_4:15343412-15343431 | Msa0152540:intron | 30.0% | |
AGAGATTAATGTCTCAAATC+GGG | - | chr1_4:15343413-15343432 | Msa0152540:intron | 30.0% | |
! | CAATATGTTGATGGAAATGA+CGG | + | chr1_4:15343443-15343462 | None:intergenic | 30.0% |
ATTCTTTCCATCCTTAGAAA+TGG | - | chr1_4:15343570-15343589 | Msa0152540:intron | 30.0% | |
! | CAATATCTATGCCATTTCTA+AGG | + | chr1_4:15343584-15343603 | None:intergenic | 30.0% |
CTTAGAAATGGCATAGATAT+TGG | - | chr1_4:15343582-15343601 | Msa0152540:intron | 30.0% | |
! | AATTGTCGATTGAGATAACA+AGG | + | chr1_4:15344098-15344117 | None:intergenic | 30.0% |
GATACTAACAGATTCAACTA+AGG | - | chr1_4:15344199-15344218 | Msa0152540:CDS | 30.0% | |
TGAAGTCACTAATATTCTCA+AGG | - | chr1_4:15344253-15344272 | Msa0152540:CDS | 30.0% | |
TGGAATTGAGACAAAAAACT+AGG | - | chr1_4:15344357-15344376 | Msa0152540:CDS | 30.0% | |
GAAACTAGAACCTTAGAATA+TGG | - | chr1_4:15344422-15344441 | Msa0152540:CDS | 30.0% | |
AACTAGAACCTTAGAATATG+GGG | - | chr1_4:15344424-15344443 | Msa0152540:CDS | 30.0% | |
AAAAACTTCCCCATATTCTA+AGG | + | chr1_4:15344435-15344454 | None:intergenic | 30.0% | |
!!! | TGTGTTGTTTTTCCTCAAAA+AGG | - | chr1_4:15344599-15344618 | Msa0152540:CDS | 30.0% |
!! | ATTCTGTTGATAATGCACAA+TGG | + | chr1_4:15344654-15344673 | None:intergenic | 30.0% |
!! | TAAAACTGTAAGTGTTGGAA+TGG | + | chr1_4:15344792-15344811 | None:intergenic | 30.0% |
ATGCATAAAACTGTAAGTGT+TGG | + | chr1_4:15344797-15344816 | None:intergenic | 30.0% | |
! | AGTCAATTCCATTTTCTCAT+TGG | - | chr1_4:15344830-15344849 | Msa0152540:CDS | 30.0% |
! | AAGAATGGACATTTTGTCAT+TGG | - | chr1_4:15344902-15344921 | Msa0152540:CDS | 30.0% |
ATGATCCAATACAATAGGTT+GGG | + | chr1_4:15345121-15345140 | None:intergenic | 30.0% | |
ACATCATGATCCAATACAAT+AGG | + | chr1_4:15345126-15345145 | None:intergenic | 30.0% | |
AATACAAGAAAAGATGCCTA+TGG | + | chr1_4:15345182-15345201 | None:intergenic | 30.0% | |
AGACAATTTAGAAGAGCTTA+TGG | - | chr1_4:15345651-15345670 | Msa0152540:intron | 30.0% | |
AATAAGCTAAAAACAGCTGA+TGG | + | chr1_4:15345695-15345714 | None:intergenic | 30.0% | |
GTATTCAAACAAGGATATGT+TGG | - | chr1_4:15345856-15345875 | Msa0152540:intron | 30.0% | |
!! | ATGTTGGTAACATGGTTTAA+TGG | - | chr1_4:15345872-15345891 | Msa0152540:intron | 30.0% |
TATATACTCAATGACAGTCT+TGG | - | chr1_4:15345924-15345943 | Msa0152540:intron | 30.0% | |
CATGAAATCTGGATATTCTT+TGG | + | chr1_4:15346099-15346118 | None:intergenic | 30.0% | |
CAAAGAATATCCAGATTTCA+TGG | - | chr1_4:15346097-15346116 | Msa0152540:intron | 30.0% | |
!!! | GATTTGTATGTTGTTTTGTC+AGG | + | chr1_4:15346128-15346147 | None:intergenic | 30.0% |
ATGTAATTGGAAAGCTGTTT+AGG | - | chr1_4:15346153-15346172 | Msa0152540:intron | 30.0% | |
TGTAATTGGAAAGCTGTTTA+GGG | - | chr1_4:15346154-15346173 | Msa0152540:intron | 30.0% | |
CAAGAAATTTCAACAAAGGA+CGG | - | chr1_4:15346182-15346201 | Msa0152540:intron | 30.0% | |
ATCCAGTGTAAAAGATGTAA+TGG | + | chr1_4:15346210-15346229 | None:intergenic | 30.0% | |
CGAAATATTTCACCAAAAGA+AGG | - | chr1_4:15346399-15346418 | Msa0152540:intron | 30.0% | |
ACTTACCATCATAGTTACTA+TGG | - | chr1_4:15346554-15346573 | Msa0152540:CDS | 30.0% | |
ACAAACCATAGTAACTATGA+TGG | + | chr1_4:15346562-15346581 | None:intergenic | 30.0% | |
! | TACTATGGTTTGTACAATGA+AGG | - | chr1_4:15346569-15346588 | Msa0152540:CDS | 30.0% |
! | TGTACAATGAAGGTATGAAA+AGG | - | chr1_4:15346579-15346598 | Msa0152540:CDS | 30.0% |
! | GTACAATGAAGGTATGAAAA+GGG | - | chr1_4:15346580-15346599 | Msa0152540:CDS | 30.0% |
TTATGAAGGAAACTCATTTG+TGG | - | chr1_4:15346840-15346859 | Msa0152540:CDS | 30.0% | |
TCATTTGTGGTATTATCAAG+TGG | - | chr1_4:15346853-15346872 | Msa0152540:CDS | 30.0% | |
!! | AAGCATTAGCATGTTTTGAA+AGG | + | chr1_4:15347012-15347031 | None:intergenic | 30.0% |
TTCAAAACATGCTAATGCTT+TGG | - | chr1_4:15347012-15347031 | Msa0152540:CDS | 30.0% | |
!! | CACTGACTTCAAATAGTTTG+AGG | - | chr1_4:15341075-15341094 | Msa0152540:CDS | 35.0% |
! | AAAAGAGTTGGCATTGAAGA+TGG | - | chr1_4:15341270-15341289 | Msa0152540:intron | 35.0% |
AAATGTCTTTACATCAGGCA+CGG | + | chr1_4:15341341-15341360 | None:intergenic | 35.0% | |
ACATTTGTAGAGCAGTATAC+TGG | - | chr1_4:15341355-15341374 | Msa0152540:intron | 35.0% | |
GCGTGGTTGCTATAAAAATA+AGG | - | chr1_4:15341386-15341405 | Msa0152540:intron | 35.0% | |
ATATGTAGCATGATCTGTAG+TGG | + | chr1_4:15341500-15341519 | None:intergenic | 35.0% | |
!!! | CAATTTTTTTCCGCTACGTA+AGG | + | chr1_4:15341530-15341549 | None:intergenic | 35.0% |
AGCGGAAAAAAATTGCAGTT+CGG | - | chr1_4:15341535-15341554 | Msa0152540:intron | 35.0% | |
AGATATTGATCCAAAGCCAA+CGG | - | chr1_4:15341591-15341610 | Msa0152540:intron | 35.0% | |
! | ATGGATGCTAGTGTAGATTT+TGG | - | chr1_4:15341697-15341716 | Msa0152540:CDS | 35.0% |
! | TGGATGCTAGTGTAGATTTT+GGG | - | chr1_4:15341698-15341717 | Msa0152540:CDS | 35.0% |
GTTTGAACTTCTTATCGTCA+TGG | + | chr1_4:15341756-15341775 | None:intergenic | 35.0% | |
AACATCCACCATAGTTCATA+TGG | + | chr1_4:15341974-15341993 | None:intergenic | 35.0% | |
! | CTCAAGATAGCTATTTCACA+AGG | + | chr1_4:15342175-15342194 | None:intergenic | 35.0% |
CTTGCTCAACATGAAATCAA+AGG | + | chr1_4:15342271-15342290 | None:intergenic | 35.0% | |
! | AGCTCCTAGGTTTTTATACT+GGG | - | chr1_4:15342323-15342342 | Msa0152540:CDS | 35.0% |
TAAGCCCAGTATAAAAACCT+AGG | + | chr1_4:15342330-15342349 | None:intergenic | 35.0% | |
TCCAACACCTTTATTGTGTT+GGG | + | chr1_4:15342459-15342478 | None:intergenic | 35.0% | |
ACATTAAGCTCAAAAACACG+AGG | + | chr1_4:15342799-15342818 | None:intergenic | 35.0% | |
TCTCTGTAATAGTTCTTCAG+AGG | + | chr1_4:15342850-15342869 | None:intergenic | 35.0% | |
TTCGGAAAATCTCTGTTACT+AGG | + | chr1_4:15342958-15342977 | None:intergenic | 35.0% | |
! | ACAGAGATTTTCCGAATTTC+AGG | - | chr1_4:15342962-15342981 | Msa0152540:intron | 35.0% |
! | CAGAGATTTTCCGAATTTCA+GGG | - | chr1_4:15342963-15342982 | Msa0152540:intron | 35.0% |
TGTTCATTATGAGGAAATCG+AGG | - | chr1_4:15342993-15343012 | Msa0152540:intron | 35.0% | |
GTTCATTATGAGGAAATCGA+GGG | - | chr1_4:15342994-15343013 | Msa0152540:intron | 35.0% | |
! | ATCACCTTTTTCTTGCAATC+CGG | - | chr1_4:15343038-15343057 | Msa0152540:intron | 35.0% |
AGTTGATCCACTCAGAATAA+AGG | - | chr1_4:15343188-15343207 | Msa0152540:intron | 35.0% | |
AACTCAACCTTTATTCTGAG+TGG | + | chr1_4:15343198-15343217 | None:intergenic | 35.0% | |
CCGTTATCCAAAGATATAGT+CGG | + | chr1_4:15343336-15343355 | None:intergenic | 35.0% | |
CCGACTATATCTTTGGATAA+CGG | - | chr1_4:15343333-15343352 | Msa0152540:CDS | 35.0% | |
CGACTATATCTTTGGATAAC+GGG | - | chr1_4:15343334-15343353 | Msa0152540:CDS | 35.0% | |
!! | TATATCTTTGGATAACGGGT+TGG | - | chr1_4:15343338-15343357 | Msa0152540:intron | 35.0% |
! | CCACAAAAGTATACTTTGCA+TGG | + | chr1_4:15343390-15343409 | None:intergenic | 35.0% |
! | CCATGCAAAGTATACTTTTG+TGG | - | chr1_4:15343387-15343406 | Msa0152540:intron | 35.0% |
! | CGATTTGAGACATTAATCTC+TGG | + | chr1_4:15343414-15343433 | None:intergenic | 35.0% |
! | TCTTCACGTATTTCTGAGAA+TGG | - | chr1_4:15343525-15343544 | Msa0152540:intron | 35.0% |
! | CTTCACGTATTTCTGAGAAT+GGG | - | chr1_4:15343526-15343545 | Msa0152540:intron | 35.0% |
! | ATCTATGCCATTTCTAAGGA+TGG | + | chr1_4:15343580-15343599 | None:intergenic | 35.0% |
AGAAATGGCATAGATATTGG+TGG | - | chr1_4:15343585-15343604 | Msa0152540:intron | 35.0% | |
CTAAATATGCTGCTAGACTT+GGG | - | chr1_4:15343748-15343767 | Msa0152540:CDS | 35.0% | |
TCCATCAGAGAAGACATATT+CGG | + | chr1_4:15343862-15343881 | None:intergenic | 35.0% | |
TATGTCTTCTCTGATGGAAT+CGG | - | chr1_4:15343864-15343883 | Msa0152540:CDS | 35.0% | |
AAATATCTCTTGAACTTGCC+AGG | - | chr1_4:15343889-15343908 | Msa0152540:CDS | 35.0% | |
GAGAATATTAGTGACTTCAC+CGG | + | chr1_4:15344252-15344271 | None:intergenic | 35.0% | |
GAAAGAAATGGCTCAACATT+AGG | + | chr1_4:15344302-15344321 | None:intergenic | 35.0% | |
TGCAGCATCATTGAAAGAAA+TGG | + | chr1_4:15344314-15344333 | None:intergenic | 35.0% | |
AATGATGCTGCAGACATTTA+GGG | - | chr1_4:15344322-15344341 | Msa0152540:CDS | 35.0% | |
! | ATTTAGGGCATCAAAGTTGT+TGG | - | chr1_4:15344337-15344356 | Msa0152540:CDS | 35.0% |
AGTCATTCTCGTGTAGTTAA+GGG | - | chr1_4:15344482-15344501 | Msa0152540:CDS | 35.0% | |
! | TTTTTCCTCAAAAAGGTCAC+AGG | - | chr1_4:15344606-15344625 | Msa0152540:CDS | 35.0% |
AGTGATGTCCAATGAGAAAA+TGG | + | chr1_4:15344841-15344860 | None:intergenic | 35.0% | |
! | GGACATCTACTTTGTTTGTT+GGG | - | chr1_4:15345044-15345063 | Msa0152540:CDS | 35.0% |
TCCATTGGATCAATTGTCAT+GGG | + | chr1_4:15345087-15345106 | None:intergenic | 35.0% | |
TTCTTCCCAACCTATTGTAT+TGG | - | chr1_4:15345113-15345132 | Msa0152540:CDS | 35.0% | |
CATGATCCAATACAATAGGT+TGG | + | chr1_4:15345122-15345141 | None:intergenic | 35.0% | |
CCTATGGATGTAAAGTTCAA+AGG | + | chr1_4:15345166-15345185 | None:intergenic | 35.0% | |
CCTTTGAACTTTACATCCAT+AGG | - | chr1_4:15345163-15345182 | Msa0152540:CDS | 35.0% | |
TTCAAGAATGATGATCAACG+AGG | - | chr1_4:15345331-15345350 | Msa0152540:CDS | 35.0% | |
TCAAGAATGATGATCAACGA+GGG | - | chr1_4:15345332-15345351 | Msa0152540:CDS | 35.0% | |
! | TTTTTCTTTTCGGTAGGAGA+TGG | - | chr1_4:15345389-15345408 | Msa0152540:CDS | 35.0% |
TTCTTATGCCTTATGAAGCA+TGG | + | chr1_4:15345625-15345644 | None:intergenic | 35.0% | |
!! | ACAAGGATATGTTGGTAACA+TGG | - | chr1_4:15345864-15345883 | Msa0152540:intron | 35.0% |
TCTTTGGCAAAAAGATTACC+AGG | + | chr1_4:15346083-15346102 | None:intergenic | 35.0% | |
! | CTCCATTACATCTTTTACAC+TGG | - | chr1_4:15346205-15346224 | Msa0152540:intron | 35.0% |
! | TACATCTTTTACACTGGATG+TGG | - | chr1_4:15346211-15346230 | Msa0152540:intron | 35.0% |
AAATCCATCAACTTCCATGT+CGG | + | chr1_4:15346255-15346274 | None:intergenic | 35.0% | |
!! | CATGGAAGTTGATGGATTTA+TGG | - | chr1_4:15346256-15346275 | Msa0152540:intron | 35.0% |
ATCCAATTATGACGAGAAGT+TGG | - | chr1_4:15346307-15346326 | Msa0152540:intron | 35.0% | |
TCCAATTATGACGAGAAGTT+GGG | - | chr1_4:15346308-15346327 | Msa0152540:intron | 35.0% | |
ACTGAATCAGAAATCCTAAG+TGG | - | chr1_4:15346359-15346378 | Msa0152540:intron | 35.0% | |
CTGAATCAGAAATCCTAAGT+GGG | - | chr1_4:15346360-15346379 | Msa0152540:intron | 35.0% | |
TATATGCAAAAGCTTCTGCT+TGG | - | chr1_4:15346522-15346541 | Msa0152540:CDS | 35.0% | |
! | ACCATTTTCTAAGCTTTCCA+TGG | - | chr1_4:15346603-15346622 | Msa0152540:CDS | 35.0% |
ACCATGGAAAGCTTAGAAAA+TGG | + | chr1_4:15346607-15346626 | None:intergenic | 35.0% | |
TTCCATAAGGGAATATGGAT+GGG | - | chr1_4:15347064-15347083 | Msa0152540:exon | 35.0% | |
ACCAAATATGTCTTCTCTGA+TGG | - | chr1_4:15347202-15347221 | Msa0152540:five_prime_UTR | 35.0% | |
TCCATCAGAGAAGACATATT+TGG | + | chr1_4:15343862-15343881 | None:intergenic | 35.0% | |
TATGTCTTCTCTGATGGAAT+TGG | - | chr1_4:15343864-15343883 | Msa0152540:CDS | 35.0% | |
ATGTCTTCTCTGATGGAATT+GGG | - | chr1_4:15347209-15347228 | Msa0152540:five_prime_UTR | 35.0% | |
AAATATCTCTTGAACTTGCC+AGG | - | chr1_4:15343889-15343908 | Msa0152540:CDS | 35.0% | |
! | TATATGATGGCCTTACGTAG+CGG | - | chr1_4:15341517-15341536 | Msa0152540:intron | 40.0% |
GCGGAAAAAAATTGCAGTTC+GGG | - | chr1_4:15341536-15341555 | Msa0152540:intron | 40.0% | |
AATCTGTAGAAGAATGCCGT+TGG | + | chr1_4:15341610-15341629 | None:intergenic | 40.0% | |
!! | TTTTGGCTGTCAGATCTCAA+AGG | - | chr1_4:15341648-15341667 | Msa0152540:CDS | 40.0% |
CTCTGTATTATGGGGAAAGA+TGG | - | chr1_4:15341678-15341697 | Msa0152540:CDS | 40.0% | |
!!! | GCTAGTGTAGATTTTGGGAT+TGG | - | chr1_4:15341703-15341722 | Msa0152540:CDS | 40.0% |
TTGGGATTGGATTGAGAAAG+TGG | - | chr1_4:15341716-15341735 | Msa0152540:CDS | 40.0% | |
AGATTGAACTGCATCAACCA+TGG | - | chr1_4:15341803-15341822 | Msa0152540:CDS | 40.0% | |
TTGCTCCATATGAACTATGG+TGG | - | chr1_4:15341966-15341985 | Msa0152540:CDS | 40.0% | |
! | CAGCTCCTAGGTTTTTATAC+TGG | - | chr1_4:15342322-15342341 | Msa0152540:CDS | 40.0% |
!!! | CTGTACAAGCTGGTTTTGTA+AGG | + | chr1_4:15342359-15342378 | None:intergenic | 40.0% |
ACAGTTATCACTGTACAAGC+TGG | + | chr1_4:15342369-15342388 | None:intergenic | 40.0% | |
CTCCAACACCTTTATTGTGT+TGG | + | chr1_4:15342460-15342479 | None:intergenic | 40.0% | |
!! | CAACACAATAAAGGTGTTGG+AGG | - | chr1_4:15342458-15342477 | Msa0152540:intron | 40.0% |
TCTAATTGCAGCATTTGGGT+TGG | + | chr1_4:15342495-15342514 | None:intergenic | 40.0% | |
ACCCAAATGCTGCAATTAGA+TGG | - | chr1_4:15342495-15342514 | Msa0152540:intron | 40.0% | |
GCCATCTAATTGCAGCATTT+GGG | + | chr1_4:15342499-15342518 | None:intergenic | 40.0% | |
AGCCATCTAATTGCAGCATT+TGG | + | chr1_4:15342500-15342519 | None:intergenic | 40.0% | |
TGGAAATTCTGCTTTCCTTG+TGG | + | chr1_4:15342532-15342551 | None:intergenic | 40.0% | |
GAACTATTACAGAGATTCCC+CGG | - | chr1_4:15342855-15342874 | Msa0152540:intron | 40.0% | |
AAGGAGTGAAATCTATCGCA+CGG | + | chr1_4:15342894-15342913 | None:intergenic | 40.0% | |
TTCACTCCTTGCAGTTGTAT+TGG | - | chr1_4:15342904-15342923 | Msa0152540:intron | 40.0% | |
TCACTCCTTGCAGTTGTATT+GGG | - | chr1_4:15342905-15342924 | Msa0152540:intron | 40.0% | |
AATCGAGGGTCAATACACAT+TGG | - | chr1_4:15343008-15343027 | Msa0152540:intron | 40.0% | |
ACATCCGGATTGCAAGAAAA+AGG | + | chr1_4:15343045-15343064 | None:intergenic | 40.0% | |
GGTATTTGAATTCCTTGAGG+AGG | + | chr1_4:15343084-15343103 | None:intergenic | 40.0% | |
GTTAATTCCTTGGTTCAGCA+CGG | - | chr1_4:15343123-15343142 | Msa0152540:intron | 40.0% | |
TCTGTTATGAACCTGCAAGA+TGG | - | chr1_4:15343259-15343278 | Msa0152540:CDS | 40.0% | |
CATCCATTCCCTTATGGAAT+CGG | + | chr1_4:15343700-15343719 | None:intergenic | 40.0% | |
GATTCCATAAGGGAATGGAT+GGG | - | chr1_4:15343699-15343718 | Msa0152540:intron | 40.0% | |
GCTAAATATGCTGCTAGACT+TGG | - | chr1_4:15343747-15343766 | Msa0152540:CDS | 40.0% | |
! | CCTTTTGACGCTTAGAGTTT+CGG | + | chr1_4:15343793-15343812 | None:intergenic | 40.0% |
TGAAATTATTCCTGACGCGA+AGG | - | chr1_4:15343821-15343840 | Msa0152540:CDS | 40.0% | |
ACCGAATATGTCTTCTCTGA+TGG | - | chr1_4:15343858-15343877 | Msa0152540:CDS | 40.0% | |
CTTATCCACTCTTGATGTCA+AGG | - | chr1_4:15344127-15344146 | Msa0152540:CDS | 40.0% | |
AGATTCAACTAAGGCACATG+AGG | - | chr1_4:15344208-15344227 | Msa0152540:CDS | 40.0% | |
! | AACTAAGGCACATGAGGTTT+TGG | - | chr1_4:15344214-15344233 | Msa0152540:CDS | 40.0% |
!! | GTTTTGGACTTGATGTGTTC+CGG | - | chr1_4:15344230-15344249 | Msa0152540:CDS | 40.0% |
CAATGATGCTGCAGACATTT+AGG | - | chr1_4:15344321-15344340 | Msa0152540:CDS | 40.0% | |
TCCAAAAGGAAGAGCAATGA+TGG | - | chr1_4:15344388-15344407 | Msa0152540:CDS | 40.0% | |
CCAAAAGGAAGAGCAATGAT+GGG | - | chr1_4:15344389-15344408 | Msa0152540:CDS | 40.0% | |
CAGTCATTCTCGTGTAGTTA+AGG | - | chr1_4:15344481-15344500 | Msa0152540:CDS | 40.0% | |
TTCTCGTGTAGTTAAGGGTA+TGG | - | chr1_4:15344487-15344506 | Msa0152540:CDS | 40.0% | |
AAACAACACAATCCACCATG+TGG | + | chr1_4:15344589-15344608 | None:intergenic | 40.0% | |
! | ATCTACCTGTGACCTTTTTG+AGG | + | chr1_4:15344614-15344633 | None:intergenic | 40.0% |
!! | AACTGTAAGTGTTGGAATGG+AGG | + | chr1_4:15344789-15344808 | None:intergenic | 40.0% |
! | GGGACATCTACTTTGTTTGT+TGG | - | chr1_4:15345043-15345062 | Msa0152540:CDS | 40.0% |
ATTGGATCAATTGTCATGGG+TGG | + | chr1_4:15345084-15345103 | None:intergenic | 40.0% | |
ACCCATGACAATTGATCCAA+TGG | - | chr1_4:15345083-15345102 | Msa0152540:CDS | 40.0% | |
CTCCATTGGATCAATTGTCA+TGG | + | chr1_4:15345088-15345107 | None:intergenic | 40.0% | |
TGGGAAGAATCATACTCCAT+TGG | + | chr1_4:15345102-15345121 | None:intergenic | 40.0% | |
GGATCATGATGTTGAGATTG+AGG | - | chr1_4:15345134-15345153 | Msa0152540:CDS | 40.0% | |
CAAGAATGATGATCAACGAG+GGG | - | chr1_4:15345333-15345352 | Msa0152540:CDS | 40.0% | |
AAGAATGATGATCAACGAGG+GGG | - | chr1_4:15345334-15345353 | Msa0152540:CDS | 40.0% | |
TTGTGTTCGATGTCTATGTC+AGG | - | chr1_4:15345592-15345611 | Msa0152540:intron | 40.0% | |
GTCAAACTCCATGCTTCATA+AGG | - | chr1_4:15345614-15345633 | Msa0152540:intron | 40.0% | |
GTAACATGGTTTAATGGTGC+AGG | - | chr1_4:15345878-15345897 | Msa0152540:intron | 40.0% | |
AGCTTTGCAAGCTCAATACA+TGG | + | chr1_4:15346011-15346030 | None:intergenic | 40.0% | |
AATCCATCAACTTCCATGTC+GGG | + | chr1_4:15346254-15346273 | None:intergenic | 40.0% | |
TCCCAACTTCTCGTCATAAT+TGG | + | chr1_4:15346312-15346331 | None:intergenic | 40.0% | |
!! | GGAAATCTGATGGACTACTA+TGG | - | chr1_4:15346329-15346348 | Msa0152540:intron | 40.0% |
TTTCACCAAAAGAAGGGATG+CGG | - | chr1_4:15346406-15346425 | Msa0152540:intron | 40.0% | |
ATGCGATTACTATGGCTGTA+AGG | - | chr1_4:15346429-15346448 | Msa0152540:intron | 40.0% | |
AGCAAATGGTAAACACACCA+TGG | + | chr1_4:15346623-15346642 | None:intergenic | 40.0% | |
ATGGTGTGTTTACCATTTGC+TGG | - | chr1_4:15346622-15346641 | Msa0152540:CDS | 40.0% | |
!! | TCTTGATTTGGACCAGCAAA+TGG | + | chr1_4:15346637-15346656 | None:intergenic | 40.0% |
TTTGCTGGTCCAAATCAAGA+AGG | - | chr1_4:15346637-15346656 | Msa0152540:CDS | 40.0% | |
TGGCTTTCTCCTTCTTGATT+TGG | + | chr1_4:15346649-15346668 | None:intergenic | 40.0% | |
!! | CTTTGGAAATTTTATGCCGC+TGG | - | chr1_4:15347029-15347048 | Msa0152540:CDS | 40.0% |
ATATTCCCTTATGGAACCAG+CGG | + | chr1_4:15347060-15347079 | None:intergenic | 40.0% | |
GTTCCATAAGGGAATATGGA+TGG | - | chr1_4:15347063-15347082 | Msa0152540:exon | 40.0% | |
!! | TATGGATGGGTGATTTTAGC+CGG | - | chr1_4:15347077-15347096 | Msa0152540:intron | 40.0% |
TTCCTCTACCGAAACTACAA+GGG | - | chr1_4:15347135-15347154 | Msa0152540:intron | 40.0% | |
TACAACAACCGAATCTGGAA+GGG | + | chr1_4:15347298-15347317 | None:intergenic | 40.0% | |
TTGTCGTCAATGTCAACGTC+AGG | + | chr1_4:15341116-15341135 | None:intergenic | 45.0% | |
GACATTCTTGCTCTCTTTCC+CGG | - | chr1_4:15341138-15341157 | Msa0152540:CDS | 45.0% | |
GTATACTGGTGAAGAAAGCG+TGG | - | chr1_4:15341369-15341388 | Msa0152540:intron | 45.0% | |
!! | TAGAAGAATGCCGTTGGCTT+TGG | + | chr1_4:15341604-15341623 | None:intergenic | 45.0% |
! | AGCTATTTCACAAGGCTCGA+TGG | + | chr1_4:15342167-15342186 | None:intergenic | 45.0% |
CTTTATTGTGTTGGGCGTGA+AGG | + | chr1_4:15342451-15342470 | None:intergenic | 45.0% | |
CTTCACGCCCAACACAATAA+AGG | - | chr1_4:15342449-15342468 | Msa0152540:intron | 45.0% | |
! | GCCCAACACAATAAAGGTGT+TGG | - | chr1_4:15342455-15342474 | Msa0152540:intron | 45.0% |
TGCTGCAATTAGATGGCTAG+AGG | - | chr1_4:15342502-15342521 | Msa0152540:intron | 45.0% | |
TGCAATTAGATGGCTAGAGG+CGG | - | chr1_4:15342505-15342524 | Msa0152540:intron | 45.0% | |
GGTCAATACACATTGGAGAG+AGG | - | chr1_4:15343015-15343034 | Msa0152540:intron | 45.0% | |
TGATCTTTCAGCCATCTTGC+AGG | + | chr1_4:15343273-15343292 | None:intergenic | 45.0% | |
TCAGTGCAAATAATCCGCCT+CGG | - | chr1_4:15343307-15343326 | Msa0152540:CDS | 45.0% | |
AAAGATATAGTCGGTGACCG+AGG | + | chr1_4:15343327-15343346 | None:intergenic | 45.0% | |
! | TCGGTCACCGACTATATCTT+TGG | - | chr1_4:15343326-15343345 | Msa0152540:CDS | 45.0% |
ACGTGTTTCATTTGTCGACG+AGG | - | chr1_4:15343473-15343492 | Msa0152540:intron | 45.0% | |
TTCATTTGTCGACGAGGAGT+TGG | - | chr1_4:15343479-15343498 | Msa0152540:intron | 45.0% | |
AGTTGCGTGAAAACTCGCTA+TGG | - | chr1_4:15343643-15343662 | Msa0152540:intron | 45.0% | |
ATGTTTGCTCGTGCAACAAC+CGG | - | chr1_4:15343666-15343685 | Msa0152540:intron | 45.0% | |
CGATTCCATAAGGGAATGGA+TGG | - | chr1_4:15343698-15343717 | Msa0152540:intron | 45.0% | |
ATCTCCCATCCATTCCCTTA+TGG | + | chr1_4:15343706-15343725 | None:intergenic | 45.0% | |
! | GCTAGACTTGGGCAATCTTT+TGG | - | chr1_4:15343759-15343778 | Msa0152540:CDS | 45.0% |
CCGAAACTCTAAGCGTCAAA+AGG | - | chr1_4:15343790-15343809 | Msa0152540:CDS | 45.0% | |
!! | ACATTTTTCAGCCACTCTCC+TGG | + | chr1_4:15343910-15343929 | None:intergenic | 45.0% |
AGGAGAGTGGCTGAAAAATG+TGG | - | chr1_4:15343909-15343928 | Msa0152540:CDS | 45.0% | |
TGCCATCTGCGTTTCAGATT+CGG | - | chr1_4:15343943-15343962 | Msa0152540:CDS | 45.0% | |
! | TACCGAATCTGAAACGCAGA+TGG | + | chr1_4:15343948-15343967 | None:intergenic | 45.0% |
! | TCTGCGTTTCAGATTCGGTA+TGG | - | chr1_4:15343948-15343967 | Msa0152540:CDS | 45.0% |
ACTGTCCTTGACATCAAGAG+TGG | + | chr1_4:15344135-15344154 | None:intergenic | 45.0% | |
! | CTCAAGGAGATGCTTTTCTG+TGG | - | chr1_4:15344269-15344288 | Msa0152540:CDS | 45.0% |
! | CCCATCATTGCTCTTCCTTT+TGG | + | chr1_4:15344392-15344411 | None:intergenic | 45.0% |
AAAAATCCCTGCTTGCACCA+GGG | - | chr1_4:15344521-15344540 | Msa0152540:CDS | 45.0% | |
!!! | TGTTCGTGTTTTGAAAGCCG+TGG | - | chr1_4:15344547-15344566 | Msa0152540:CDS | 45.0% |
ACATGGTTTAATGGTGCAGG+AGG | - | chr1_4:15345881-15345900 | Msa0152540:intron | 45.0% | |
TGCAAAGACTGTGTGTGCAT+TGG | + | chr1_4:15345958-15345977 | None:intergenic | 45.0% | |
! | GCAGTTGACTTTCCAAAGAC+CGG | - | chr1_4:15346041-15346060 | Msa0152540:intron | 45.0% |
GATTACCAGGTATAACGGCT+GGG | + | chr1_4:15346070-15346089 | None:intergenic | 45.0% | |
AGATTACCAGGTATAACGGC+TGG | + | chr1_4:15346071-15346090 | None:intergenic | 45.0% | |
TCAGGCTTCTCCATGAAATC+TGG | + | chr1_4:15346110-15346129 | None:intergenic | 45.0% | |
AAAGTCGTATGATCCCGACA+TGG | - | chr1_4:15346238-15346257 | Msa0152540:intron | 45.0% | |
CGAGAAGTTGGGAAATCTGA+TGG | - | chr1_4:15346319-15346338 | Msa0152540:intron | 45.0% | |
TGTAAGGTCCCTAAGGAAAG+AGG | - | chr1_4:15346445-15346464 | Msa0152540:intron | 45.0% | |
AGAAGGAGAAAGCCATGATG+AGG | - | chr1_4:15346654-15346673 | Msa0152540:CDS | 45.0% | |
GCTAGAATGCATCCTCATCA+TGG | + | chr1_4:15346669-15346688 | None:intergenic | 45.0% | |
GATGAGGATGCATTCTAGCA+TGG | - | chr1_4:15346670-15346689 | Msa0152540:CDS | 45.0% | |
TGGAACAAAGTTTCAGTCGC+AGG | - | chr1_4:15346690-15346709 | Msa0152540:CDS | 45.0% | |
!! | AGATACCGCTGGTTCCATAA+GGG | - | chr1_4:15347052-15347071 | Msa0152540:exon | 45.0% |
! | GCTGGTTCCATAAGGGAATA+TGG | - | chr1_4:15347059-15347078 | Msa0152540:exon | 45.0% |
CACCCATCCATATTCCCTTA+TGG | + | chr1_4:15347069-15347088 | None:intergenic | 45.0% | |
GTTCCTCTACCGAAACTACA+AGG | - | chr1_4:15347134-15347153 | Msa0152540:intron | 45.0% | |
!!! | ACATTTTTTGGCCACTCTCC+TGG | + | chr1_4:15347254-15347273 | None:intergenic | 45.0% |
CTACAACAACCGAATCTGGA+AGG | + | chr1_4:15347299-15347318 | None:intergenic | 45.0% | |
TCTCTTTCCCGGATTCCTCA+AGG | - | chr1_4:15341149-15341168 | Msa0152540:CDS | 50.0% | |
TCGACAGACCTTGAGGAATC+CGG | + | chr1_4:15341160-15341179 | None:intergenic | 50.0% | |
!! | ATCAGCATCGACAGACCTTG+AGG | + | chr1_4:15341167-15341186 | None:intergenic | 50.0% |
CACTGCATAGGCCATATCTC+CGG | - | chr1_4:15342403-15342422 | Msa0152540:CDS | 50.0% | |
ACTGCATAGGCCATATCTCC+GGG | - | chr1_4:15342404-15342423 | Msa0152540:CDS | 50.0% | |
GGATTTAGTCCCACATTGCC+CGG | + | chr1_4:15342425-15342444 | None:intergenic | 50.0% | |
GAGATTCCCCGGATAAGCAA+TGG | - | chr1_4:15342866-15342885 | Msa0152540:intron | 50.0% | |
ACGGATCCATTGCTTATCCG+GGG | + | chr1_4:15342875-15342894 | None:intergenic | 50.0% | |
CACGGATCCATTGCTTATCC+GGG | + | chr1_4:15342876-15342895 | None:intergenic | 50.0% | |
GCACGGATCCATTGCTTATC+CGG | + | chr1_4:15342877-15342896 | None:intergenic | 50.0% | |
GACTGCCCAATACAACTGCA+AGG | + | chr1_4:15342913-15342932 | None:intergenic | 50.0% | |
CAATCCGGATGTTGTTCCCA+TGG | - | chr1_4:15343053-15343072 | Msa0152540:intron | 50.0% | |
GCAACCATGGGAACAACATC+CGG | + | chr1_4:15343060-15343079 | None:intergenic | 50.0% | |
!! | GAGGCGGATTATTTGCACTG+AGG | + | chr1_4:15343308-15343327 | None:intergenic | 50.0% |
!! | ACGGGTTGGTATATGTTCGC+AGG | - | chr1_4:15343352-15343371 | Msa0152540:intron | 50.0% |
!! | CGGGTTGGTATATGTTCGCA+GGG | - | chr1_4:15343353-15343372 | Msa0152540:intron | 50.0% |
TGTTTGCTCGTGCAACAACC+GGG | - | chr1_4:15343667-15343686 | Msa0152540:intron | 50.0% | |
!! | GCTCACTGCCGATTCCATAA+GGG | - | chr1_4:15343689-15343708 | Msa0152540:intron | 50.0% |
!! | CTGCCGATTCCATAAGGGAA+TGG | - | chr1_4:15343694-15343713 | Msa0152540:intron | 50.0% |
CCATGTTTAACCTTCGCGTC+AGG | + | chr1_4:15343834-15343853 | None:intergenic | 50.0% | |
CCTGACGCGAAGGTTAAACA+TGG | - | chr1_4:15343831-15343850 | Msa0152540:CDS | 50.0% | |
TCTTGAACTTGCCAGGAGAG+TGG | - | chr1_4:15343896-15343915 | Msa0152540:CDS | 50.0% | |
! | GCGTTTCAGATTCGGTATGG+CGG | - | chr1_4:15343951-15343970 | Msa0152540:CDS | 50.0% |
! | CGTTTCAGATTCGGTATGGC+GGG | - | chr1_4:15343952-15343971 | Msa0152540:CDS | 50.0% |
!! | ATTCGGTATGGCGGGTACAA+AGG | - | chr1_4:15343960-15343979 | Msa0152540:CDS | 50.0% |
GACAACTTCACAGACGAGGT+TGG | + | chr1_4:15344002-15344021 | None:intergenic | 50.0% | |
CAGTGACAACTTCACAGACG+AGG | + | chr1_4:15344006-15344025 | None:intergenic | 50.0% | |
CGTCTGTGAAGTTGTCACTG+AGG | - | chr1_4:15344006-15344025 | Msa0152540:CDS | 50.0% | |
GAAAAATCCCTGCTTGCACC+AGG | - | chr1_4:15344520-15344539 | Msa0152540:CDS | 50.0% | |
TCAAAACACGAACATCGCCC+TGG | + | chr1_4:15344541-15344560 | None:intergenic | 50.0% | |
CCACATCCAAACGAGTGTTC+CGG | - | chr1_4:15345006-15345025 | Msa0152540:CDS | 50.0% | |
TCACTTCCGGAACACTCGTT+TGG | + | chr1_4:15345015-15345034 | None:intergenic | 50.0% | |
TGGTTTAATGGTGCAGGAGG+TGG | - | chr1_4:15345884-15345903 | Msa0152540:intron | 50.0% | |
TTTAATGGTGCAGGAGGTGG+AGG | - | chr1_4:15345887-15345906 | Msa0152540:intron | 50.0% | |
GGCTCAGACATTGCTTTAGC+AGG | + | chr1_4:15345990-15346009 | None:intergenic | 50.0% | |
AGGTATAACGGCTGGGATAC+CGG | + | chr1_4:15346063-15346082 | None:intergenic | 50.0% | |
GATCCCGACATGGAAGTTGA+TGG | - | chr1_4:15346248-15346267 | Msa0152540:intron | 50.0% | |
GGATGCGGATGCGATTACTA+TGG | - | chr1_4:15346421-15346440 | Msa0152540:intron | 50.0% | |
CTATGGCTGTAAGGTCCCTA+AGG | - | chr1_4:15346438-15346457 | Msa0152540:intron | 50.0% | |
ACTCCTCGCCTCTTTCCTTA+GGG | + | chr1_4:15346456-15346475 | None:intergenic | 50.0% | |
AACTCCTCGCCTCTTTCCTT+AGG | + | chr1_4:15346457-15346476 | None:intergenic | 50.0% | |
TAAGGAAAGAGGCGAGGAGT+TGG | - | chr1_4:15346456-15346475 | Msa0152540:intron | 50.0% | |
GTGGGGCTGATGTAGATTCT+GGG | - | chr1_4:15346489-15346508 | Msa0152540:intron | 50.0% | |
!! | GAGATACCGCTGGTTCCATA+AGG | - | chr1_4:15347051-15347070 | Msa0152540:exon | 50.0% |
GACCCTTGTAGTTTCGGTAG+AGG | + | chr1_4:15347140-15347159 | None:intergenic | 50.0% | |
GCTGCTGACCCTTGTAGTTT+CGG | + | chr1_4:15347146-15347165 | None:intergenic | 50.0% | |
TCTTGAACTTGCCAGGAGAG+TGG | - | chr1_4:15343896-15343915 | Msa0152540:CDS | 50.0% | |
AACCGAATCTGGAAGGGAGA+CGG | + | chr1_4:15347292-15347311 | None:intergenic | 50.0% | |
CGACAGACCTTGAGGAATCC+GGG | + | chr1_4:15341159-15341178 | None:intergenic | 55.0% | |
CAGGCACGGTGACATGATGA+GGG | + | chr1_4:15341327-15341346 | None:intergenic | 55.0% | |
TCAGGCACGGTGACATGATG+AGG | + | chr1_4:15341328-15341347 | None:intergenic | 55.0% | |
! | TCCACAAGAGTGCAGCTCCT+AGG | - | chr1_4:15342310-15342329 | Msa0152540:CDS | 55.0% |
ACCTAGGAGCTGCACTCTTG+TGG | + | chr1_4:15342314-15342333 | None:intergenic | 55.0% | |
CGGAGATATGGCCTATGCAG+TGG | + | chr1_4:15342405-15342424 | None:intergenic | 55.0% | |
GCCATATCTCCGGGCAATGT+GGG | - | chr1_4:15342413-15342432 | Msa0152540:CDS | 55.0% | |
TCCCACATTGCCCGGAGATA+TGG | + | chr1_4:15342417-15342436 | None:intergenic | 55.0% | |
TTGTGTTGGGCGTGAAGGAG+TGG | + | chr1_4:15342446-15342465 | None:intergenic | 55.0% | |
CCTTGAGGAGGAGCAACCAT+GGG | + | chr1_4:15343072-15343091 | None:intergenic | 55.0% | |
TCCTTGAGGAGGAGCAACCA+TGG | + | chr1_4:15343073-15343092 | None:intergenic | 55.0% | |
AAGACAGCCGTGCTGAACCA+AGG | + | chr1_4:15343133-15343152 | None:intergenic | 55.0% | |
GTTCAGCACGGCTGTCTTTC+AGG | - | chr1_4:15343135-15343154 | Msa0152540:intron | 55.0% | |
GATATAGTCGGTGACCGAGG+CGG | + | chr1_4:15343324-15343343 | None:intergenic | 55.0% | |
TATGGAATCGGCAGTGAGCC+CGG | + | chr1_4:15343688-15343707 | None:intergenic | 55.0% | |
!! | GGCTCACTGCCGATTCCATA+AGG | - | chr1_4:15343688-15343707 | Msa0152540:intron | 55.0% |
ACACTCGTTTGGATGTGGCC+TGG | + | chr1_4:15345004-15345023 | None:intergenic | 55.0% | |
CCGGAACACTCGTTTGGATG+TGG | + | chr1_4:15345009-15345028 | None:intergenic | 55.0% | |
GGTATCCCAGCCGTTATACC+TGG | - | chr1_4:15346062-15346081 | Msa0152540:intron | 55.0% | |
! | CGCATCCGCATCCCTTCTTT+TGG | + | chr1_4:15346414-15346433 | None:intergenic | 55.0% |
! | AGAGGCGAGGAGTTGGTTCA+AGG | - | chr1_4:15346463-15346482 | Msa0152540:intron | 55.0% |
! | GCGAGGAGTTGGTTCAAGGA+CGG | - | chr1_4:15346467-15346486 | Msa0152540:intron | 55.0% |
! | AGGAGTTGGTTCAAGGACGG+TGG | - | chr1_4:15346470-15346489 | Msa0152540:intron | 55.0% |
! | GGAGTTGGTTCAAGGACGGT+GGG | - | chr1_4:15346471-15346490 | Msa0152540:intron | 55.0% |
! | GAGTTGGTTCAAGGACGGTG+GGG | - | chr1_4:15346472-15346491 | Msa0152540:intron | 55.0% |
GGTGGGGCTGATGTAGATTC+TGG | - | chr1_4:15346488-15346507 | Msa0152540:intron | 55.0% | |
TGCCGTCTCCCTTCCAGATT+CGG | - | chr1_4:15347287-15347306 | Msa0152540:five_prime_UTR | 55.0% | |
GGCCATATCTCCGGGCAATG+TGG | - | chr1_4:15342412-15342431 | Msa0152540:CDS | 60.0% | |
ATGGCTAGAGGCGGACCACA+AGG | - | chr1_4:15342514-15342533 | Msa0152540:intron | 60.0% | |
CCCATGGTTGCTCCTCCTCA+AGG | - | chr1_4:15343069-15343088 | Msa0152540:intron | 60.0% | |
! | TGGCGGGTACAAAGGAGTCG+TGG | - | chr1_4:15343968-15343987 | Msa0152540:CDS | 60.0% |
ACATCGCCCTGGTGCAAGCA+GGG | + | chr1_4:15344530-15344549 | None:intergenic | 60.0% | |
AACATCGCCCTGGTGCAAGC+AGG | + | chr1_4:15344531-15344550 | None:intergenic | 60.0% | |
GCGCAAAGCTGGCACATCCA+CGG | + | chr1_4:15344567-15344586 | None:intergenic | 60.0% | |
TGTGCCAGCTTTGCGCCACA+TGG | - | chr1_4:15344571-15344590 | Msa0152540:CDS | 60.0% | |
TCCACCATGTGGCGCAAAGC+TGG | + | chr1_4:15344578-15344597 | None:intergenic | 60.0% | |
ACGGCTGGGATACCGGTCTT+TGG | + | chr1_4:15346056-15346075 | None:intergenic | 60.0% | |
GGTCCCTAAGGAAAGAGGCG+AGG | - | chr1_4:15346450-15346469 | Msa0152540:intron | 60.0% | |
TATGCCGCTGGAGATACCGC+TGG | - | chr1_4:15347041-15347060 | Msa0152540:CDS | 60.0% | |
GGAACCAGCGGTATCTCCAG+CGG | + | chr1_4:15347048-15347067 | None:intergenic | 60.0% | |
GCCAGCTTTGCGCCACATGG+TGG | - | chr1_4:15344574-15344593 | Msa0152540:CDS | 65.0% | |
ATCCTCCGCGTGCGCGGTTG+CGG | - | chr1_4:15342133-15342152 | Msa0152540:CDS | 70.0% | |
AGTCTCCGCAACCGCGCACG+CGG | + | chr1_4:15342141-15342160 | None:intergenic | 70.0% | |
CCGCGCACGCGGAGGATACC+CGG | + | chr1_4:15342130-15342149 | None:intergenic | 75.0% | |
CCGGGTATCCTCCGCGTGCG+CGG | - | chr1_4:15342127-15342146 | Msa0152540:CDS | 75.0% | |
! | CTCCGCAACCGCGCACGCGG+AGG | + | chr1_4:15342138-15342157 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 15341040 | 15347318 | 15341040 | ID=Msa0152540;Name=Msa0152540 |
chr1_4 | mRNA | 15341040 | 15347318 | 15341040 | ID=Msa0152540-mRNA-1;Parent=Msa0152540;Name=Msa0152540-mRNA-1;_AED=0.40;_eAED=0.40;_QI=157|0.2|0.16|0.33|0.8|0.66|6|0|1198 |
chr1_4 | exon | 15341040 | 15341262 | 15341040 | ID=Msa0152540-mRNA-1:exon:6000;Parent=Msa0152540-mRNA-1 |
chr1_4 | exon | 15341647 | 15342458 | 15341647 | ID=Msa0152540-mRNA-1:exon:5999;Parent=Msa0152540-mRNA-1 |
chr1_4 | exon | 15343203 | 15343353 | 15343203 | ID=Msa0152540-mRNA-1:exon:5998;Parent=Msa0152540-mRNA-1 |
chr1_4 | exon | 15343731 | 15345574 | 15343731 | ID=Msa0152540-mRNA-1:exon:5997;Parent=Msa0152540-mRNA-1 |
chr1_4 | exon | 15346503 | 15347095 | 15346503 | ID=Msa0152540-mRNA-1:exon:5996;Parent=Msa0152540-mRNA-1 |
chr1_4 | exon | 15347188 | 15347318 | 15347188 | ID=Msa0152540-mRNA-1:exon:5995;Parent=Msa0152540-mRNA-1 |
chr1_4 | five_prime_UTR | 15347188 | 15347318 | 15347188 | ID=Msa0152540-mRNA-1:five_prime_utr;Parent=Msa0152540-mRNA-1 |
chr1_4 | five_prime_UTR | 15347070 | 15347095 | 15347070 | ID=Msa0152540-mRNA-1:five_prime_utr;Parent=Msa0152540-mRNA-1 |
chr1_4 | CDS | 15346503 | 15347069 | 15346503 | ID=Msa0152540-mRNA-1:cds;Parent=Msa0152540-mRNA-1 |
chr1_4 | CDS | 15343731 | 15345574 | 15343731 | ID=Msa0152540-mRNA-1:cds;Parent=Msa0152540-mRNA-1 |
chr1_4 | CDS | 15343203 | 15343353 | 15343203 | ID=Msa0152540-mRNA-1:cds;Parent=Msa0152540-mRNA-1 |
chr1_4 | CDS | 15341647 | 15342458 | 15341647 | ID=Msa0152540-mRNA-1:cds;Parent=Msa0152540-mRNA-1 |
chr1_4 | CDS | 15341040 | 15341262 | 15341040 | ID=Msa0152540-mRNA-1:cds;Parent=Msa0152540-mRNA-1 |
Gene Sequence |
Protein sequence |