Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154660 | XP_003589825.2 | 90.452 | 398 | 17 | 2 | 1 | 377 | 1 | 398 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154660 | sp|Q2NI00|DHQS_METST | 38.235 | 374 | 170 | 10 | 49 | 377 | 2 | 359 | 6.20e-69 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154660 | G7IDE5 | 90.452 | 398 | 17 | 2 | 1 | 377 | 1 | 398 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0154660 | Msa0298970 | 0.807137 | 5.854195e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154660 | MtrunA17_Chr1g0165441 | 90.452 | 398 | 17 | 2 | 1 | 377 | 1 | 398 | 0.0 | 715 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154660 | AT3G28760.1 | 66.006 | 353 | 97 | 2 | 47 | 376 | 69 | 421 | 6.94e-169 | 478 |
| Msa0154660 | AT3G28760.2 | 66.006 | 353 | 97 | 2 | 47 | 376 | 91 | 443 | 1.89e-168 | 478 |
Find 80 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAGTGAGAAGGATATTT+TGG | 0.180793 | 1_4:+19378068 | Msa0154660:CDS |
| CAATGCATTCTACTTCTTCT+TGG | 0.222003 | 1_4:+19376714 | Msa0154660:CDS |
| GGAAAGGAGCAGCTTATATT+TGG | 0.262534 | 1_4:+19382177 | Msa0154660:three_prime_UTR |
| TTTGGATGCACAAAATAAAA+AGG | 0.273689 | 1_4:+19378086 | Msa0154660:CDS |
| GGCAAAAGATGCTTCACTTT+AGG | 0.292968 | 1_4:+19382301 | Msa0154660:three_prime_UTR |
| AATCAAAGAAAGTGTGGATA+TGG | 0.301157 | 1_4:+19376765 | Msa0154660:CDS |
| CACGCCTACATTGCTGTTCC+AGG | 0.323371 | 1_4:+19380072 | Msa0154660:CDS |
| AAGACTTGGTCTGATATCTT+TGG | 0.346536 | 1_4:-19382203 | None:intergenic |
| CATTGCTTTCTTCTGTTCTT+CGG | 0.350670 | 1_4:-19379351 | None:intergenic |
| AGTGATTGTGGTTGATCAAC+AGG | 0.351036 | 1_4:+19380137 | Msa0154660:CDS |
| ATGTCTTTACTGTCGCAAAT+TGG | 0.354779 | 1_4:+19376626 | Msa0154660:CDS |
| CGAGCCTATTCTTGAGCTTA+AGG | 0.355289 | 1_4:+19379246 | Msa0154660:CDS |
| TTCCTCAACTTGCCAATGAT+TGG | 0.356737 | 1_4:+19376858 | Msa0154660:CDS |
| AGATGGCAAATACAGTCTTT+TGG | 0.378386 | 1_4:-19379046 | None:intergenic |
| ATGTATGTAAACAGATATAA+TGG | 0.383937 | 1_4:+19382341 | Msa0154660:three_prime_UTR |
| AAATTCTTGAATCTCTATTC+CGG | 0.391166 | 1_4:-19382021 | None:intergenic |
| CAAATTCAAGTTGCTGGAAT+GGG | 0.397178 | 1_4:+19379403 | Msa0154660:CDS |
| CTCAAGAAATGTTTGAGCTT+CGG | 0.401369 | 1_4:-19379081 | None:intergenic |
| GCACTTGAACATGGCTTAGA+TGG | 0.408508 | 1_4:+19379199 | Msa0154660:CDS |
| AATTTGTGTCACAGTGGCTT+TGG | 0.410779 | 1_4:-19379386 | None:intergenic |
| GTGACACAAATTCAAGTTGC+TGG | 0.412213 | 1_4:+19379397 | Msa0154660:CDS |
| GTAGAATGCATTGAAGAAGA+AGG | 0.440983 | 1_4:-19376704 | None:intergenic |
| CGGCAAAGAATTGCAATTGT+TGG | 0.452724 | 1_4:+19380162 | Msa0154660:CDS |
| ACAAATTGAATTACCTTGTA+CGG | 0.452777 | 1_4:-19381851 | None:intergenic |
| TCTTGTTCATTCAGAATGCT+TGG | 0.454670 | 1_4:+19379581 | Msa0154660:CDS |
| CCAGTGACATCACTAAAAGT+TGG | 0.464939 | 1_4:+19381957 | Msa0154660:CDS |
| TACCTGTCAGAATTAAAATC+AGG | 0.467479 | 1_4:+19380108 | Msa0154660:CDS |
| CAAGTTGAGGAAGGTGAGAT+GGG | 0.470330 | 1_4:-19376847 | None:intergenic |
| TAAAATACATGACCAATCAT+TGG | 0.473391 | 1_4:-19376870 | None:intergenic |
| ACAGCAATGTAGGCGTGAAC+TGG | 0.479131 | 1_4:-19380066 | None:intergenic |
| GCAAGTTGAGGAAGGTGAGA+TGG | 0.481357 | 1_4:-19376848 | None:intergenic |
| GCTTTAGTTTGTCCCGTACA+AGG | 0.485966 | 1_4:+19381838 | Msa0154660:CDS |
| AAACGTGTGTTGGAAGTAGA+AGG | 0.486239 | 1_4:-19376671 | None:intergenic |
| TTGTTACCAGTATCCTCCAT+TGG | 0.488842 | 1_4:-19376740 | None:intergenic |
| ACAAATTCAAGTTGCTGGAA+TGG | 0.489970 | 1_4:+19379402 | Msa0154660:CDS |
| TGGACACCAATGGAGGATAC+TGG | 0.494012 | 1_4:+19376734 | Msa0154660:CDS |
| CAAATTGAATTACCTTGTAC+GGG | 0.507264 | 1_4:-19381850 | None:intergenic |
| TACTTCTTCTTGGACACCAA+TGG | 0.511004 | 1_4:+19376724 | Msa0154660:CDS |
| AGGTAGGATGTTCTACCGCC+TGG | 0.514003 | 1_4:-19380090 | None:intergenic |
| TAGGTTGGATCCTTTGCTAG+AGG | 0.519842 | 1_4:+19379552 | Msa0154660:intron |
| CTAAGTCGTTCTAGTTCCTC+CGG | 0.524065 | 1_4:-19378135 | None:intergenic |
| CTCTGCAGTCTTATGAGACC+TGG | 0.525874 | 1_4:+19379445 | Msa0154660:CDS |
| TAGAATGCATTGAAGAAGAA+GGG | 0.527695 | 1_4:-19376703 | None:intergenic |
| GTAAACAGATATAATGGAGT+TGG | 0.537288 | 1_4:+19382347 | Msa0154660:three_prime_UTR |
| CTTACCGCATTCACCCGAAA+AGG | 0.538390 | 1_4:-19379627 | None:intergenic |
| ATCAGGAAAAGAAGTGATTG+TGG | 0.556374 | 1_4:+19380125 | Msa0154660:CDS |
| CAAGGAGGGGCTCGACATAC+CGG | 0.557488 | 1_4:+19382002 | Msa0154660:CDS |
| AAGAAATAATCCTCTAGCAA+AGG | 0.559960 | 1_4:-19379562 | None:intergenic |
| ATCACCTTAAGCTCAAGAAT+AGG | 0.564561 | 1_4:-19379250 | None:intergenic |
| CTGCAGCTGTTGAAAGAGGA+TGG | 0.567310 | 1_4:+19376810 | Msa0154660:CDS |
| GACCAATCATTGGCAAGTTG+AGG | 0.569625 | 1_4:-19376860 | None:intergenic |
| TTCGGATGCATTATCAGAGA+TGG | 0.570257 | 1_4:-19379063 | None:intergenic |
| AAATTCAAGTTGCTGGAATG+GGG | 0.571305 | 1_4:+19379404 | Msa0154660:CDS |
| GGAATTGTGAAAAGTCCAGT+TGG | 0.576153 | 1_4:+19382280 | Msa0154660:three_prime_UTR |
| CTTAAGCTCAAGAATAGGCT+CGG | 0.579163 | 1_4:-19379245 | None:intergenic |
| CGAAGCTCAAACATTTCTTG+AGG | 0.585383 | 1_4:+19379082 | Msa0154660:CDS |
| TTCTATTGAGAATACAAGGA+GGG | 0.587874 | 1_4:+19381988 | Msa0154660:CDS |
| ATGAAAATAATGCAAAGACT+TGG | 0.605754 | 1_4:-19382217 | None:intergenic |
| GAAGTTCTATTGAGAATACA+AGG | 0.609646 | 1_4:+19381984 | Msa0154660:CDS |
| AATCATTGGCAAGTTGAGGA+AGG | 0.609879 | 1_4:-19376856 | None:intergenic |
| ACCGCCTGGAACAGCAATGT+AGG | 0.611914 | 1_4:-19380076 | None:intergenic |
| TTCTTCTTGGACACCAATGG+AGG | 0.612243 | 1_4:+19376727 | Msa0154660:CDS |
| TCTATTGAGAATACAAGGAG+GGG | 0.613333 | 1_4:+19381989 | Msa0154660:CDS |
| ATGACTGCAGCTGTTGAAAG+AGG | 0.614177 | 1_4:+19376806 | Msa0154660:CDS |
| GTTGTGACGCAAACGTGTGT+TGG | 0.621291 | 1_4:-19376681 | None:intergenic |
| GCTGTCATTTCAGACAGACT+CGG | 0.625378 | 1_4:+19381771 | Msa0154660:intron |
| AATTCAAGTTGCTGGAATGG+GGG | 0.626295 | 1_4:+19379405 | Msa0154660:CDS |
| GTGTTGGAAGTAGAAGGTGG+TGG | 0.630075 | 1_4:-19376665 | None:intergenic |
| AAGAGGACAGATGACTGCAA+TGG | 0.637867 | 1_4:-19378043 | None:intergenic |
| TTGTGGTTGATCAACAGGGT+CGG | 0.642420 | 1_4:+19380142 | Msa0154660:CDS |
| AGTCTTATGAGACCTGGTGA+AGG | 0.644139 | 1_4:+19379451 | Msa0154660:CDS |
| CATACGAGAAGTCCTTCACC+AGG | 0.653315 | 1_4:-19379463 | None:intergenic |
| GATATGGACAAAGAACAAGC+AGG | 0.656378 | 1_4:+19376781 | Msa0154660:CDS |
| GTGATTGTGGTTGATCAACA+GGG | 0.670264 | 1_4:+19380138 | Msa0154660:CDS |
| GCCTACATTGCTGTTCCAGG+CGG | 0.679259 | 1_4:+19380075 | Msa0154660:CDS |
| AACTTGAATTTGTGTCACAG+TGG | 0.683036 | 1_4:-19379392 | None:intergenic |
| GTAAAGACATCTTATGTCAG+CGG | 0.685556 | 1_4:-19376613 | None:intergenic |
| GTTCTATTGAGAATACAAGG+AGG | 0.709797 | 1_4:+19381987 | Msa0154660:CDS |
| ACTAGAACGACTTAGACCTG+AGG | 0.735230 | 1_4:+19378143 | Msa0154660:CDS |
| CGTGTGTTGGAAGTAGAAGG+TGG | 0.751214 | 1_4:-19376668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAGTCTTTAAAATTTT+AGG | + | chr1_4:19377553-19377572 | Msa0154660:intron | 10.0% |
| !! | TGTTAAAATAGTTAAAAATA+TGG | - | chr1_4:19381311-19381330 | None:intergenic | 10.0% |
| !!! | GATTTAAAATATAATGGAAA+GGG | - | chr1_4:19376914-19376933 | None:intergenic | 15.0% |
| !!! | CAATTGGATTTAAAATATAA+TGG | - | chr1_4:19376920-19376939 | None:intergenic | 15.0% |
| !!! | CATTATATTTTAAATCCAAT+TGG | + | chr1_4:19376918-19376937 | Msa0154660:intron | 15.0% |
| !! | AATGAAATTTAAACACAAAA+TGG | - | chr1_4:19376947-19376966 | None:intergenic | 15.0% |
| !!! | AATAAAATAAAAACTTGCTT+CGG | - | chr1_4:19377668-19377687 | None:intergenic | 15.0% |
| !! | GATTAAAATGAAAAACAAAA+GGG | - | chr1_4:19377728-19377747 | None:intergenic | 15.0% |
| !! | AGATTAAAATGAAAAACAAA+AGG | - | chr1_4:19377729-19377748 | None:intergenic | 15.0% |
| !!! | TTTTATGATATTTGGAATTT+TGG | + | chr1_4:19378004-19378023 | Msa0154660:intron | 15.0% |
| !! | TACATTATTGAAATTGAAAA+TGG | - | chr1_4:19378946-19378965 | None:intergenic | 15.0% |
| !!! | AAATATTTTCCAATAACTAA+TGG | - | chr1_4:19380244-19380263 | None:intergenic | 15.0% |
| !!! | CAAAAAAACAAATTCTAAAA+AGG | - | chr1_4:19380295-19380314 | None:intergenic | 15.0% |
| !!! | CTTTTGCTTATATTTTATAA+TGG | - | chr1_4:19380699-19380718 | None:intergenic | 15.0% |
| !! | TAACGATGTAAAAAATTATA+CGG | - | chr1_4:19381115-19381134 | None:intergenic | 15.0% |
| !! | AATTATCTGAATTTGAAAAT+AGG | + | chr1_4:19381443-19381462 | Msa0154660:intron | 15.0% |
| !!! | GGATTTAAAATATAATGGAA+AGG | - | chr1_4:19376915-19376934 | None:intergenic | 20.0% |
| !!! | CTGATATCATTTTAGAATTT+GGG | - | chr1_4:19377232-19377251 | None:intergenic | 20.0% |
| !!! | TCTGATATCATTTTAGAATT+TGG | - | chr1_4:19377233-19377252 | None:intergenic | 20.0% |
| !! | AATAAATTAGTGATTCACTT+TGG | - | chr1_4:19377537-19377556 | None:intergenic | 20.0% |
| !! | AAATTAACCAAATTCTTAAG+TGG | + | chr1_4:19377599-19377618 | Msa0154660:intron | 20.0% |
| !!! | TTAATTTGTTGATACATGAT+TGG | + | chr1_4:19377825-19377844 | Msa0154660:intron | 20.0% |
| !!! | ACTTTTATTTTAATGAACTC+CGG | - | chr1_4:19377925-19377944 | None:intergenic | 20.0% |
| !! | TTGTAGTTAATTTACTTGAT+TGG | + | chr1_4:19378184-19378203 | Msa0154660:intron | 20.0% |
| !! | AAACAAGGAAAACTAATATA+AGG | - | chr1_4:19378445-19378464 | None:intergenic | 20.0% |
| !! | TGAGGTATATAAATATTAGT+AGG | + | chr1_4:19379100-19379119 | Msa0154660:intron | 20.0% |
| !! | GAGGTATATAAATATTAGTA+GGG | + | chr1_4:19379101-19379120 | Msa0154660:intron | 20.0% |
| !! | AGGTATATAAATATTAGTAG+GGG | + | chr1_4:19379102-19379121 | Msa0154660:intron | 20.0% |
| !! | ATTATAAATAATGAGACAGA+GGG | - | chr1_4:19380500-19380519 | None:intergenic | 20.0% |
| !! | TATTATAAATAATGAGACAG+AGG | - | chr1_4:19380501-19380520 | None:intergenic | 20.0% |
| !! | TCTTGAGATACAATTAATAA+GGG | - | chr1_4:19380566-19380585 | None:intergenic | 20.0% |
| !! | ATCTTGAGATACAATTAATA+AGG | - | chr1_4:19380567-19380586 | None:intergenic | 20.0% |
| !! | AAATAATGAATTCAAAACCA+TGG | + | chr1_4:19381389-19381408 | Msa0154660:intron | 20.0% |
| !! | AATAATGAATTCAAAACCAT+GGG | + | chr1_4:19381390-19381409 | Msa0154660:intron | 20.0% |
| !!! | ATTTTTCTTTTCCATTGATT+TGG | - | chr1_4:19381426-19381445 | None:intergenic | 20.0% |
| !! | ATGTATGTAAACAGATATAA+TGG | + | chr1_4:19382341-19382360 | Msa0154660:three_prime_UTR | 20.0% |
| ! | ACAAAAAATCAAAGAAAGTG+TGG | + | chr1_4:19376759-19376778 | Msa0154660:CDS | 25.0% |
| ! | TAAAATACATGACCAATCAT+TGG | - | chr1_4:19376873-19376892 | None:intergenic | 25.0% |
| !! | TCATTGTGTTTTCAAATGAT+TGG | + | chr1_4:19376966-19376985 | Msa0154660:intron | 25.0% |
| ! | CTAATTCAACTTTACAAAAC+CGG | - | chr1_4:19377203-19377222 | None:intergenic | 25.0% |
| !!! | CTTTAAAATTTTAGGAGAAG+AGG | + | chr1_4:19377561-19377580 | Msa0154660:intron | 25.0% |
| !! | CATTCAAAAGGAAGATATTT+TGG | + | chr1_4:19377783-19377802 | Msa0154660:intron | 25.0% |
| !! | TGGAAATGTTTTTCACATTT+AGG | + | chr1_4:19377845-19377864 | Msa0154660:intron | 25.0% |
| !! | AAATAGAGTTTGAGTTATGT+TGG | + | chr1_4:19377884-19377903 | Msa0154660:intron | 25.0% |
| ! | GGAGTTCATTAAAATAAAAG+TGG | + | chr1_4:19377924-19377943 | Msa0154660:intron | 25.0% |
| ! | TTTGGATGCACAAAATAAAA+AGG | + | chr1_4:19378086-19378105 | Msa0154660:CDS | 25.0% |
| !!! | ATATTGATTCAGCAAAAACA+AGG | - | chr1_4:19378460-19378479 | None:intergenic | 25.0% |
| !!! | TTTGAGCAATTTTCAAGTAT+CGG | + | chr1_4:19378564-19378583 | Msa0154660:intron | 25.0% |
| !! | TTATTACTACCAATTTTCTG+AGG | + | chr1_4:19378836-19378855 | Msa0154660:intron | 25.0% |
| !! | TATTACTACCAATTTTCTGA+GGG | + | chr1_4:19378837-19378856 | Msa0154660:intron | 25.0% |
| ! | AGATTTAAACTGAAAGTAAG+AGG | - | chr1_4:19379315-19379334 | None:intergenic | 25.0% |
| ! | ACTTTCAGTTTAAATCTTTC+AGG | + | chr1_4:19379318-19379337 | Msa0154660:intron | 25.0% |
| !!! | AAGTTTTTGACTGTTAAGAA+TGG | - | chr1_4:19379528-19379547 | None:intergenic | 25.0% |
| ! | AACAGTCAAAAACTTTCTTT+AGG | + | chr1_4:19379533-19379552 | Msa0154660:intron | 25.0% |
| ! | AAGATGAATGTTTGATGTTA+TGG | + | chr1_4:19379981-19380000 | Msa0154660:intron | 25.0% |
| ! | TTTGTGTATCCATTAGTTAT+TGG | + | chr1_4:19380232-19380251 | Msa0154660:intron | 25.0% |
| ! | GAATTTGAACAAATCACTAT+TGG | + | chr1_4:19380447-19380466 | Msa0154660:intron | 25.0% |
| ! | AAACAGTAAGATGAATAGTT+AGG | - | chr1_4:19380591-19380610 | None:intergenic | 25.0% |
| !!! | TTACTGTTTTTGTCAAATAG+CGG | + | chr1_4:19380602-19380621 | Msa0154660:intron | 25.0% |
| !! | GATGTACTTGGTTTAAAATT+TGG | - | chr1_4:19380749-19380768 | None:intergenic | 25.0% |
| ! | TCAAACAAAATTGATGTACT+TGG | - | chr1_4:19380761-19380780 | None:intergenic | 25.0% |
| !! | CTTTTGCTTATGTTTTGTAA+TGG | + | chr1_4:19380785-19380804 | Msa0154660:intron | 25.0% |
| !! | AATCATCTTTTCCACTAATT+AGG | - | chr1_4:19381080-19381099 | None:intergenic | 25.0% |
| ! | TAATTAGTGGAAAAGATGAT+TGG | + | chr1_4:19381079-19381098 | Msa0154660:intron | 25.0% |
| ! | AGAGTGAAAATAAGGAAATA+TGG | - | chr1_4:19381171-19381190 | None:intergenic | 25.0% |
| ! | TGTAAAAAACACGGAAATAT+GGG | - | chr1_4:19381256-19381275 | None:intergenic | 25.0% |
| ! | GATTTATGGTGTAAAAAACA+CGG | - | chr1_4:19381265-19381284 | None:intergenic | 25.0% |
| ! | AACAAGGAAATATGGATTTA+TGG | - | chr1_4:19381279-19381298 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTTTAGTTGCTG+TGG | - | chr1_4:19381355-19381374 | None:intergenic | 25.0% |
| ! | ATAATGAATTCAAAACCATG+GGG | + | chr1_4:19381391-19381410 | Msa0154660:intron | 25.0% |
| ! | TTTAACTCTGAATTTCATCA+GGG | - | chr1_4:19381508-19381527 | None:intergenic | 25.0% |
| ! | ATTTAACTCTGAATTTCATC+AGG | - | chr1_4:19381509-19381528 | None:intergenic | 25.0% |
| ! | TAAAGACAACTAGAAATAGA+TGG | - | chr1_4:19381652-19381671 | None:intergenic | 25.0% |
| !! | TTAGCAATATTTTCATAGTG+TGG | + | chr1_4:19381669-19381688 | Msa0154660:intron | 25.0% |
| ! | ACAAATTGAATTACCTTGTA+CGG | - | chr1_4:19381854-19381873 | None:intergenic | 25.0% |
| ! | AAATTCTTGAATCTCTATTC+CGG | - | chr1_4:19382024-19382043 | None:intergenic | 25.0% |
| ! | ATGAAAATAATGCAAAGACT+TGG | - | chr1_4:19382220-19382239 | None:intergenic | 25.0% |
| !! | ATTTAGCATCTCTTTCTTTT+AGG | + | chr1_4:19382259-19382278 | Msa0154660:three_prime_UTR | 25.0% |
| TAGAATGCATTGAAGAAGAA+GGG | - | chr1_4:19376706-19376725 | None:intergenic | 30.0% | |
| ! | AATCAAAGAAAGTGTGGATA+TGG | + | chr1_4:19376765-19376784 | Msa0154660:CDS | 30.0% |
| AACACAAAATGGAAACCAAT+TGG | - | chr1_4:19376936-19376955 | None:intergenic | 30.0% | |
| AACACAAATATCGCAATTAG+AGG | - | chr1_4:19377057-19377076 | None:intergenic | 30.0% | |
| TATTTGTGTTGCCTTCATTA+TGG | + | chr1_4:19377067-19377086 | Msa0154660:intron | 30.0% | |
| GTGTAGTGTTTATAAAGCTT+TGG | + | chr1_4:19377159-19377178 | Msa0154660:intron | 30.0% | |
| !! | CGGTTTTGTAAAGTTGAATT+AGG | + | chr1_4:19377201-19377220 | Msa0154660:intron | 30.0% |
| TTTCTATGACAACTATCCAA+GGG | - | chr1_4:19377503-19377522 | None:intergenic | 30.0% | |
| ATTTCTATGACAACTATCCA+AGG | - | chr1_4:19377504-19377523 | None:intergenic | 30.0% | |
| TCAAAAGCCACTTAAGAATT+TGG | - | chr1_4:19377609-19377628 | None:intergenic | 30.0% | |
| ACAAATTTGATCCAATGTCT+TGG | + | chr1_4:19377755-19377774 | Msa0154660:intron | 30.0% | |
| !! | TTGGTGATTTTGAATTTTGC+CGG | + | chr1_4:19377903-19377922 | Msa0154660:intron | 30.0% |
| AGTTAATTTACTTGATTGGC+AGG | + | chr1_4:19378188-19378207 | Msa0154660:intron | 30.0% | |
| TCTAGACACAGAATAATCAA+CGG | - | chr1_4:19378663-19378682 | None:intergenic | 30.0% | |
| ATGTGGTTGTTTATATTTGC+TGG | + | chr1_4:19378893-19378912 | Msa0154660:intron | 30.0% | |
| ! | TTGCAACCTTTGAATTTTGT+AGG | + | chr1_4:19379177-19379196 | Msa0154660:intron | 30.0% |
| AATACTCAAGAAGCTTCAAA+TGG | - | chr1_4:19379283-19379302 | None:intergenic | 30.0% | |
| ! | CTCGTATGTATTCATTTTGA+TGG | + | chr1_4:19379478-19379497 | Msa0154660:intron | 30.0% |
| GTCAAAAACTTTCTTTAGGT+TGG | + | chr1_4:19379537-19379556 | Msa0154660:intron | 30.0% | |
| AAGAAATAATCCTCTAGCAA+AGG | - | chr1_4:19379565-19379584 | None:intergenic | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr1_4:19379808-19379827 | None:intergenic | 30.0% |
| !! | TTAACCAAACTAGTCTTTCA+TGG | + | chr1_4:19379922-19379941 | Msa0154660:intron | 30.0% |
| ATTCATCATAGAGTTTCTCT+TGG | - | chr1_4:19380015-19380034 | None:intergenic | 30.0% | |
| ATTACAAGTAACTGGTGAAA+AGG | - | chr1_4:19380038-19380057 | None:intergenic | 30.0% | |
| ACCAGTTACTTGTAATAACA+GGG | + | chr1_4:19380042-19380061 | Msa0154660:intron | 30.0% | |
| !!! | TGATTTTAATTCTGACAGGT+AGG | - | chr1_4:19380109-19380128 | None:intergenic | 30.0% |
| TACCTGTCAGAATTAAAATC+AGG | + | chr1_4:19380108-19380127 | Msa0154660:CDS | 30.0% | |
| !!! | TTCCTGATTTTAATTCTGAC+AGG | - | chr1_4:19380113-19380132 | None:intergenic | 30.0% |
| GTCTACTTTCTATCTTTACA+CGG | - | chr1_4:19380188-19380207 | None:intergenic | 30.0% | |
| AAAGGATACTTAGTATGAGA+CGG | - | chr1_4:19380277-19380296 | None:intergenic | 30.0% | |
| ! | TGTTTCTTATGTGTTCTAGA+AGG | - | chr1_4:19380330-19380349 | None:intergenic | 30.0% |
| !! | CAATGGTGAGTTGATTAATT+AGG | - | chr1_4:19380398-19380417 | None:intergenic | 30.0% |
| !! | GTCAAAGAAAGTTGATGTAT+TGG | + | chr1_4:19380722-19380741 | Msa0154660:intron | 30.0% |
| ! | TTGCTTATGTTTTGTAATGG+AGG | + | chr1_4:19380788-19380807 | Msa0154660:intron | 30.0% |
| !! | TGCTTATGTTTTGTAATGGA+GGG | + | chr1_4:19380789-19380808 | Msa0154660:intron | 30.0% |
| TAACAAAGTAGTTAGTGACA+AGG | - | chr1_4:19380893-19380912 | None:intergenic | 30.0% | |
| !! | TTTTGAAGGTAGGAACATAA+GGG | - | chr1_4:19381038-19381057 | None:intergenic | 30.0% |
| !! | TTTTTGAAGGTAGGAACATA+AGG | - | chr1_4:19381039-19381058 | None:intergenic | 30.0% |
| !!! | TAAGGAAGTTTGGTTTTTGA+AGG | - | chr1_4:19381052-19381071 | None:intergenic | 30.0% |
| ATGATGCTAGAGTGAAAATA+AGG | - | chr1_4:19381179-19381198 | None:intergenic | 30.0% | |
| TATGGGTGCAGTTAAAAATA+TGG | - | chr1_4:19381239-19381258 | None:intergenic | 30.0% | |
| GTGTAAAAAACACGGAAATA+TGG | - | chr1_4:19381257-19381276 | None:intergenic | 30.0% | |
| TAATGAATTCAAAACCATGG+GGG | + | chr1_4:19381392-19381411 | Msa0154660:intron | 30.0% | |
| TTGTAAGTGTTATACATGGT+GGG | - | chr1_4:19381532-19381551 | None:intergenic | 30.0% | |
| TTTGTAAGTGTTATACATGG+TGG | - | chr1_4:19381533-19381552 | None:intergenic | 30.0% | |
| GAGTTTGTAAGTGTTATACA+TGG | - | chr1_4:19381536-19381555 | None:intergenic | 30.0% | |
| AGATGTAAGAGAACTTGAAA+TGG | + | chr1_4:19381600-19381619 | Msa0154660:intron | 30.0% | |
| CAAATTGAATTACCTTGTAC+GGG | - | chr1_4:19381853-19381872 | None:intergenic | 30.0% | |
| AACGGTTTATTTCCTGAATA+GGG | - | chr1_4:19381924-19381943 | None:intergenic | 30.0% | |
| TAACGGTTTATTTCCTGAAT+AGG | - | chr1_4:19381925-19381944 | None:intergenic | 30.0% | |
| !!! | ACTGGAAAAGCTGTTTTTAA+CGG | - | chr1_4:19381942-19381961 | None:intergenic | 30.0% |
| GAAGTTCTATTGAGAATACA+AGG | + | chr1_4:19381984-19382003 | Msa0154660:CDS | 30.0% | |
| TTCTATTGAGAATACAAGGA+GGG | + | chr1_4:19381988-19382007 | Msa0154660:CDS | 30.0% | |
| !!! | AGAGTGGTTCATGATTTTTT+TGG | + | chr1_4:19382149-19382168 | Msa0154660:intron | 30.0% |
| !!! | TTCATGATTTTTTTGGCTAG+AGG | + | chr1_4:19382156-19382175 | Msa0154660:three_prime_UTR | 30.0% |
| ! | GTAAACAGATATAATGGAGT+TGG | + | chr1_4:19382347-19382366 | Msa0154660:three_prime_UTR | 30.0% |
| GTAAAGACATCTTATGTCAG+CGG | - | chr1_4:19376616-19376635 | None:intergenic | 35.0% | |
| ATGTCTTTACTGTCGCAAAT+TGG | + | chr1_4:19376626-19376645 | Msa0154660:CDS | 35.0% | |
| GTAGAATGCATTGAAGAAGA+AGG | - | chr1_4:19376707-19376726 | None:intergenic | 35.0% | |
| CAATGCATTCTACTTCTTCT+TGG | + | chr1_4:19376714-19376733 | Msa0154660:CDS | 35.0% | |
| ! | TGTGTTTTCAAATGATTGGC+TGG | + | chr1_4:19376970-19376989 | Msa0154660:intron | 35.0% |
| GAAATATTCTGCCTTCATTG+CGG | + | chr1_4:19377020-19377039 | Msa0154660:intron | 35.0% | |
| TGAAAATTCAGCCTTCATTG+TGG | + | chr1_4:19377332-19377351 | Msa0154660:intron | 35.0% | |
| CAACTCATATGTCGCAAATA+AGG | - | chr1_4:19377372-19377391 | None:intergenic | 35.0% | |
| TTCTATGACAACTATCCAAG+GGG | - | chr1_4:19377502-19377521 | None:intergenic | 35.0% | |
| TTAGGAGAAGAGGAACAATT+TGG | + | chr1_4:19377571-19377590 | Msa0154660:intron | 35.0% | |
| TGAATGTCATTCCAAGACAT+TGG | - | chr1_4:19377769-19377788 | None:intergenic | 35.0% | |
| GTCTTGGAATGACATTCAAA+AGG | + | chr1_4:19377771-19377790 | Msa0154660:intron | 35.0% | |
| TTTGGCGATAGTAAAATGCT+TGG | + | chr1_4:19377801-19377820 | Msa0154660:intron | 35.0% | |
| !! | ATTTGGAATTTTGGCCATGA+TGG | + | chr1_4:19378013-19378032 | Msa0154660:intron | 35.0% |
| ! | TGCTAGTGAGAAGGATATTT+TGG | + | chr1_4:19378068-19378087 | Msa0154660:CDS | 35.0% |
| TGTCGAAACGTCAAAAATTG+TGG | - | chr1_4:19378115-19378134 | None:intergenic | 35.0% | |
| ! | AATTTTTGACGTTTCGACAC+CGG | + | chr1_4:19378116-19378135 | Msa0154660:CDS | 35.0% |
| AGTGTCTCATATAGTCCTTA+CGG | + | chr1_4:19378262-19378281 | Msa0154660:intron | 35.0% | |
| TTCAAACGACTTTCAAGCAT+TGG | - | chr1_4:19378292-19378311 | None:intergenic | 35.0% | |
| !! | AAGTTATTTTCTCACCCGTA+AGG | + | chr1_4:19378485-19378504 | Msa0154660:intron | 35.0% |
| CTTAAAGATGGAAAATGCTG+GGG | - | chr1_4:19378615-19378634 | None:intergenic | 35.0% | |
| CCTTAAAGATGGAAAATGCT+GGG | - | chr1_4:19378616-19378635 | None:intergenic | 35.0% | |
| TCCTTAAAGATGGAAAATGC+TGG | - | chr1_4:19378617-19378636 | None:intergenic | 35.0% | |
| CATTAGCTAGTCCTTAAAGA+TGG | - | chr1_4:19378627-19378646 | None:intergenic | 35.0% | |
| !! | CATCTTTAAGGACTAGCTAA+TGG | + | chr1_4:19378625-19378644 | Msa0154660:intron | 35.0% |
| ACTTTCTACTTGAAGAGATG+TGG | + | chr1_4:19378876-19378895 | Msa0154660:intron | 35.0% | |
| ! | GCAGCAATTATATTTTCTGC+AGG | - | chr1_4:19379014-19379033 | None:intergenic | 35.0% |
| !! | ATACAGTCTTTTGGCTGTTT+TGG | - | chr1_4:19379040-19379059 | None:intergenic | 35.0% |
| ! | AGATGGCAAATACAGTCTTT+TGG | - | chr1_4:19379049-19379068 | None:intergenic | 35.0% |
| CTCAAGAAATGTTTGAGCTT+CGG | - | chr1_4:19379084-19379103 | None:intergenic | 35.0% | |
| !! | AATATTAGTAGGGGTGTTAC+AGG | + | chr1_4:19379111-19379130 | Msa0154660:intron | 35.0% |
| ATTCAAAGGTTGCAACTGTA+AGG | - | chr1_4:19379172-19379191 | None:intergenic | 35.0% | |
| CAAGTGCCTACAAAATTCAA+AGG | - | chr1_4:19379186-19379205 | None:intergenic | 35.0% | |
| ! | ATTTTGTAGGCACTTGAACA+TGG | + | chr1_4:19379190-19379209 | Msa0154660:intron | 35.0% |
| ATCACCTTAAGCTCAAGAAT+AGG | - | chr1_4:19379253-19379272 | None:intergenic | 35.0% | |
| ! | TTGAAGCTTCTTGAGTATTG+AGG | + | chr1_4:19379284-19379303 | Msa0154660:intron | 35.0% |
| CATTGCTTTCTTCTGTTCTT+CGG | - | chr1_4:19379354-19379373 | None:intergenic | 35.0% | |
| AACTTGAATTTGTGTCACAG+TGG | - | chr1_4:19379395-19379414 | None:intergenic | 35.0% | |
| !! | ACAAATTCAAGTTGCTGGAA+TGG | + | chr1_4:19379402-19379421 | Msa0154660:CDS | 35.0% |
| !! | CAAATTCAAGTTGCTGGAAT+GGG | + | chr1_4:19379403-19379422 | Msa0154660:CDS | 35.0% |
| !! | AAATTCAAGTTGCTGGAATG+GGG | + | chr1_4:19379404-19379423 | Msa0154660:CDS | 35.0% |
| TCTTGTTCATTCAGAATGCT+TGG | + | chr1_4:19379581-19379600 | Msa0154660:CDS | 35.0% | |
| AAGCTATCTTGGAGACTTTA+TGG | - | chr1_4:19379797-19379816 | None:intergenic | 35.0% | |
| CATCAAACATTCATCTTCCA+AGG | - | chr1_4:19379978-19379997 | None:intergenic | 35.0% | |
| CACCAGTTACTTGTAATAAC+AGG | + | chr1_4:19380041-19380060 | Msa0154660:intron | 35.0% | |
| TCCCTGTTATTACAAGTAAC+TGG | - | chr1_4:19380046-19380065 | None:intergenic | 35.0% | |
| ATCAGGAAAAGAAGTGATTG+TGG | + | chr1_4:19380125-19380144 | Msa0154660:CDS | 35.0% | |
| !! | TGGTGAGTTGATTAATTAGG+TGG | - | chr1_4:19380395-19380414 | None:intergenic | 35.0% |
| GCACTGCTATTGAAAAACAA+TGG | - | chr1_4:19380415-19380434 | None:intergenic | 35.0% | |
| TGTACTAACGAGCAACAAAA+GGG | - | chr1_4:19380657-19380676 | None:intergenic | 35.0% | |
| TTGTACTAACGAGCAACAAA+AGG | - | chr1_4:19380658-19380677 | None:intergenic | 35.0% | |
| TCAATCGCAGAAAATAGTAG+CGG | - | chr1_4:19380868-19380887 | None:intergenic | 35.0% | |
| TGTGCAGAATCTTAAAAGAC+AGG | + | chr1_4:19380984-19381003 | Msa0154660:intron | 35.0% | |
| GGAACATAAGGGTTAGATAA+GGG | - | chr1_4:19381027-19381046 | None:intergenic | 35.0% | |
| AGGAACATAAGGGTTAGATA+AGG | - | chr1_4:19381028-19381047 | None:intergenic | 35.0% | |
| !!! | GAAGTTTGGTTTTTGAAGGT+AGG | - | chr1_4:19381048-19381067 | None:intergenic | 35.0% |
| TTAGGAGTGATAAGGAAGTT+TGG | - | chr1_4:19381062-19381081 | None:intergenic | 35.0% | |
| TCCTTATCACTCCTAATTAG+TGG | + | chr1_4:19381066-19381085 | Msa0154660:intron | 35.0% | |
| TCCACTAATTAGGAGTGATA+AGG | - | chr1_4:19381070-19381089 | None:intergenic | 35.0% | |
| GATGACTTACTCTATTGTGA+TGG | + | chr1_4:19381201-19381220 | Msa0154660:intron | 35.0% | |
| TCGCAGAAAACAAGGAAATA+TGG | - | chr1_4:19381287-19381306 | None:intergenic | 35.0% | |
| AATATGGATCGCAGAAAACA+AGG | - | chr1_4:19381295-19381314 | None:intergenic | 35.0% | |
| !! | TTTTAGTTGCTGTGGATTGA+TGG | - | chr1_4:19381347-19381366 | None:intergenic | 35.0% |
| AATGAATTCAAAACCATGGG+GGG | + | chr1_4:19381393-19381412 | Msa0154660:intron | 35.0% | |
| GTAAGAGAACTTGAAATGGA+TGG | + | chr1_4:19381604-19381623 | Msa0154660:intron | 35.0% | |
| GTTCTATTGAGAATACAAGG+AGG | + | chr1_4:19381987-19382006 | Msa0154660:CDS | 35.0% | |
| TCTATTGAGAATACAAGGAG+GGG | + | chr1_4:19381989-19382008 | Msa0154660:CDS | 35.0% | |
| !!! | GATTTTTTTGGCTAGAGGAA+AGG | + | chr1_4:19382161-19382180 | Msa0154660:three_prime_UTR | 35.0% |
| ! | AAGACTTGGTCTGATATCTT+TGG | - | chr1_4:19382206-19382225 | None:intergenic | 35.0% |
| AAACGTGTGTTGGAAGTAGA+AGG | - | chr1_4:19376674-19376693 | None:intergenic | 40.0% | |
| TACTTCTTCTTGGACACCAA+TGG | + | chr1_4:19376724-19376743 | Msa0154660:CDS | 40.0% | |
| TTGTTACCAGTATCCTCCAT+TGG | - | chr1_4:19376743-19376762 | None:intergenic | 40.0% | |
| GATATGGACAAAGAACAAGC+AGG | + | chr1_4:19376781-19376800 | Msa0154660:CDS | 40.0% | |
| ! | AATCATTGGCAAGTTGAGGA+AGG | - | chr1_4:19376859-19376878 | None:intergenic | 40.0% |
| TTCCTCAACTTGCCAATGAT+TGG | + | chr1_4:19376858-19376877 | Msa0154660:CDS | 40.0% | |
| ATATCGCAATTAGAGGCTAC+TGG | - | chr1_4:19377050-19377069 | None:intergenic | 40.0% | |
| CTTATCCTAGACCTCTTGTT+GGG | + | chr1_4:19377254-19377273 | Msa0154660:intron | 40.0% | |
| CTCATATGTCGCAAATAAGG+AGG | - | chr1_4:19377369-19377388 | None:intergenic | 40.0% | |
| ATGAGTTGCCTTCATTGTGT+TGG | + | chr1_4:19377384-19377403 | Msa0154660:intron | 40.0% | |
| TGAGTTGCCTTCATTGTGTT+GGG | + | chr1_4:19377385-19377404 | Msa0154660:intron | 40.0% | |
| TTCATTGTGTTGGGTGTGAA+GGG | + | chr1_4:19377394-19377413 | Msa0154660:intron | 40.0% | |
| ATTGCCTAGAGATCGAACAT+CGG | + | chr1_4:19377433-19377452 | Msa0154660:intron | 40.0% | |
| ! | TCCTCTTTTTGCTAGTGAGA+AGG | + | chr1_4:19378059-19378078 | Msa0154660:CDS | 40.0% |
| TCCTTCTCACTAGCAAAAAG+AGG | - | chr1_4:19378063-19378082 | None:intergenic | 40.0% | |
| !! | TTCCTTGTTATTTGCCGAAC+CGG | - | chr1_4:19378396-19378415 | None:intergenic | 40.0% |
| ! | CCCAGCATTTTCCATCTTTA+AGG | + | chr1_4:19378613-19378632 | Msa0154660:intron | 40.0% |
| CAGAATAATCAACGGATGAC+AGG | - | chr1_4:19378655-19378674 | None:intergenic | 40.0% | |
| CTCATCTTCCCTCAGAAAAT+TGG | - | chr1_4:19378848-19378867 | None:intergenic | 40.0% | |
| TTGTACACAATTGCTCACTC+AGG | + | chr1_4:19378983-19379002 | Msa0154660:intron | 40.0% | |
| TTCGGATGCATTATCAGAGA+TGG | - | chr1_4:19379066-19379085 | None:intergenic | 40.0% | |
| CGAAGCTCAAACATTTCTTG+AGG | + | chr1_4:19379082-19379101 | Msa0154660:CDS | 40.0% | |
| CTTAAGCTCAAGAATAGGCT+CGG | - | chr1_4:19379248-19379267 | None:intergenic | 40.0% | |
| ACTCAAGAAGCTTCAAATGG+AGG | - | chr1_4:19379280-19379299 | None:intergenic | 40.0% | |
| AATTTGTGTCACAGTGGCTT+TGG | - | chr1_4:19379389-19379408 | None:intergenic | 40.0% | |
| !! | GTGACACAAATTCAAGTTGC+TGG | + | chr1_4:19379397-19379416 | Msa0154660:CDS | 40.0% |
| !! | AATTCAAGTTGCTGGAATGG+GGG | + | chr1_4:19379405-19379424 | Msa0154660:CDS | 40.0% |
| ! | ACATTGCAAGCAGACCTTTT+CGG | + | chr1_4:19379613-19379632 | Msa0154660:CDS | 40.0% |
| AGTTTGAGCCAGAGAATTGA+AGG | - | chr1_4:19379658-19379677 | None:intergenic | 40.0% | |
| ! | TGAGCCATGAAAGACTAGTT+TGG | - | chr1_4:19379929-19379948 | None:intergenic | 40.0% |
| TTCTCTACTCTCTACTTCCT+TGG | + | chr1_4:19379958-19379977 | Msa0154660:intron | 40.0% | |
| AGTGATTGTGGTTGATCAAC+AGG | + | chr1_4:19380137-19380156 | Msa0154660:CDS | 40.0% | |
| GTGATTGTGGTTGATCAACA+GGG | + | chr1_4:19380138-19380157 | Msa0154660:CDS | 40.0% | |
| CGGCAAAGAATTGCAATTGT+TGG | + | chr1_4:19380162-19380181 | Msa0154660:CDS | 40.0% | |
| AAGTAGACCACTAATCCTTG+TGG | + | chr1_4:19380200-19380219 | Msa0154660:intron | 40.0% | |
| GATACTTAGTATGAGACGGA+TGG | - | chr1_4:19380273-19380292 | None:intergenic | 40.0% | |
| !! | GGTGGATTGAGATACAAGAA+GGG | - | chr1_4:19380377-19380396 | None:intergenic | 40.0% |
| !! | AGGTGGATTGAGATACAAGA+AGG | - | chr1_4:19380378-19380397 | None:intergenic | 40.0% |
| ATAGCAGTGCTATAGTAGAG+CGG | + | chr1_4:19380425-19380444 | Msa0154660:intron | 40.0% | |
| ATAGCGGCGTTATAAAGTAG+CGG | + | chr1_4:19380618-19380637 | Msa0154660:intron | 40.0% | |
| AAGGGTTAGATAAGGGATTG+TGG | - | chr1_4:19381020-19381039 | None:intergenic | 40.0% | |
| GACTTACTCTATTGTGATGG+TGG | + | chr1_4:19381204-19381223 | Msa0154660:intron | 40.0% | |
| AATGGATGGACGAAGTAAGA+TGG | + | chr1_4:19381618-19381637 | Msa0154660:intron | 40.0% | |
| TGTTGTCTGTTTCCCTATTC+AGG | + | chr1_4:19381909-19381928 | Msa0154660:intron | 40.0% | |
| ! | CCAACTTTTAGTGATGTCAC+TGG | - | chr1_4:19381960-19381979 | None:intergenic | 40.0% |
| CCAGTGACATCACTAAAAGT+TGG | + | chr1_4:19381957-19381976 | Msa0154660:CDS | 40.0% | |
| CTCTAGCATCAAAGTTGCAA+AGG | - | chr1_4:19382133-19382152 | None:intergenic | 40.0% | |
| TTGCAACTTTGATGCTAGAG+TGG | + | chr1_4:19382133-19382152 | Msa0154660:intron | 40.0% | |
| GGAAAGGAGCAGCTTATATT+TGG | + | chr1_4:19382177-19382196 | Msa0154660:three_prime_UTR | 40.0% | |
| GGAATTGTGAAAAGTCCAGT+TGG | + | chr1_4:19382280-19382299 | Msa0154660:three_prime_UTR | 40.0% | |
| GGCAAAAGATGCTTCACTTT+AGG | + | chr1_4:19382301-19382320 | Msa0154660:three_prime_UTR | 40.0% | |
| TTCTTCTTGGACACCAATGG+AGG | + | chr1_4:19376727-19376746 | Msa0154660:CDS | 45.0% | |
| ATGACTGCAGCTGTTGAAAG+AGG | + | chr1_4:19376806-19376825 | Msa0154660:CDS | 45.0% | |
| ! | CAAGTTGAGGAAGGTGAGAT+GGG | - | chr1_4:19376850-19376869 | None:intergenic | 45.0% |
| GACCAATCATTGGCAAGTTG+AGG | - | chr1_4:19376863-19376882 | None:intergenic | 45.0% | |
| GATGTTGGAGGCCATAATGA+AGG | - | chr1_4:19377081-19377100 | None:intergenic | 45.0% | |
| TCCAACATCTTCACTGTGCT+GGG | + | chr1_4:19377092-19377111 | Msa0154660:intron | 45.0% | |
| ACTACACAAGCCATATCTCC+AGG | - | chr1_4:19377146-19377165 | None:intergenic | 45.0% | |
| GCTTATCCTAGACCTCTTGT+TGG | + | chr1_4:19377253-19377272 | Msa0154660:intron | 45.0% | |
| TCGCAAATAAGGAGGCTAGA+GGG | - | chr1_4:19377361-19377380 | None:intergenic | 45.0% | |
| CTTCACACCCAACACAATGA+AGG | - | chr1_4:19377395-19377414 | None:intergenic | 45.0% | |
| CTTCATTGTGTTGGGTGTGA+AGG | + | chr1_4:19377393-19377412 | Msa0154660:intron | 45.0% | |
| TCATTGTGTTGGGTGTGAAG+GGG | + | chr1_4:19377395-19377414 | Msa0154660:intron | 45.0% | |
| GTTCGATCTCTAGGCAATGT+GGG | - | chr1_4:19377431-19377450 | None:intergenic | 45.0% | |
| TGTTCGATCTCTAGGCAATG+TGG | - | chr1_4:19377432-19377451 | None:intergenic | 45.0% | |
| AAGAGGACAGATGACTGCAA+TGG | - | chr1_4:19378046-19378065 | None:intergenic | 45.0% | |
| !! | CTAAGTCGTTCTAGTTCCTC+CGG | - | chr1_4:19378138-19378157 | None:intergenic | 45.0% |
| ACTAGAACGACTTAGACCTG+AGG | + | chr1_4:19378143-19378162 | Msa0154660:CDS | 45.0% | |
| ! | TTTTCTGCTTGCTCATCCTC+AGG | - | chr1_4:19378162-19378181 | None:intergenic | 45.0% |
| GTCTCATATAGTCCTTACGG+TGG | + | chr1_4:19378265-19378284 | Msa0154660:intron | 45.0% | |
| !! | GGGTTGATGTTTCAGTTGTG+AGG | - | chr1_4:19378365-19378384 | None:intergenic | 45.0% |
| AACATCAACCCAATCTGTGC+CGG | + | chr1_4:19378374-19378393 | Msa0154660:intron | 45.0% | |
| ! | TTTTCTCACCCGTAAGGATG+TGG | + | chr1_4:19378491-19378510 | Msa0154660:intron | 45.0% |
| CACCTTTAAGCAGAAGTCCA+GGG | - | chr1_4:19378521-19378540 | None:intergenic | 45.0% | |
| ACTTCTGCTTAAAGGTGGTG+AGG | + | chr1_4:19378524-19378543 | Msa0154660:intron | 45.0% | |
| !! | TTAGTAGGGGTGTTACAGGT+CGG | + | chr1_4:19379115-19379134 | Msa0154660:intron | 45.0% |
| GCACTTGAACATGGCTTAGA+TGG | + | chr1_4:19379199-19379218 | Msa0154660:CDS | 45.0% | |
| CGAGCCTATTCTTGAGCTTA+AGG | + | chr1_4:19379246-19379265 | Msa0154660:CDS | 45.0% | |
| ! | AGTCTTATGAGACCTGGTGA+AGG | + | chr1_4:19379451-19379470 | Msa0154660:CDS | 45.0% |
| ! | TAGGTTGGATCCTTTGCTAG+AGG | + | chr1_4:19379552-19379571 | Msa0154660:intron | 45.0% |
| ! | CATTGCAAGCAGACCTTTTC+GGG | + | chr1_4:19379614-19379633 | Msa0154660:CDS | 45.0% |
| AAGTTGCGCCTTCAATTCTC+TGG | + | chr1_4:19379647-19379666 | Msa0154660:intron | 45.0% | |
| TTGTGGTTGATCAACAGGGT+CGG | + | chr1_4:19380142-19380161 | Msa0154660:CDS | 45.0% | |
| TAGACCACTAATCCTTGTGG+AGG | + | chr1_4:19380203-19380222 | Msa0154660:intron | 45.0% | |
| TTTGCCTCCACAAGGATTAG+TGG | - | chr1_4:19380210-19380229 | None:intergenic | 45.0% | |
| ACTAATCCTTGTGGAGGCAA+AGG | + | chr1_4:19380209-19380228 | Msa0154660:intron | 45.0% | |
| AATGGAGGGAGTAGCAGTAA+TGG | + | chr1_4:19380803-19380822 | Msa0154660:intron | 45.0% | |
| GGGGACATCTACCAAATCAA+TGG | + | chr1_4:19381412-19381431 | Msa0154660:intron | 45.0% | |
| ! | GCTGTCATTTCAGACAGACT+CGG | + | chr1_4:19381771-19381790 | Msa0154660:intron | 45.0% |
| !! | GCTTTAGTTTGTCCCGTACA+AGG | + | chr1_4:19381838-19381857 | Msa0154660:CDS | 45.0% |
| !! | GTGAAGCATCTTTTGCCAAC+TGG | - | chr1_4:19382298-19382317 | None:intergenic | 45.0% |
| !!! | AATTATAATTTTATGATATT+TGG | + | chr1_4:19377996-19378015 | Msa0154660:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTGATAT+AGG | - | chr1_4:19381478-19381497 | None:intergenic | 5.0% |
| GTGTTGGAAGTAGAAGGTGG+TGG | - | chr1_4:19376668-19376687 | None:intergenic | 50.0% | |
| CGTGTGTTGGAAGTAGAAGG+TGG | - | chr1_4:19376671-19376690 | None:intergenic | 50.0% | |
| GTTGTGACGCAAACGTGTGT+TGG | - | chr1_4:19376684-19376703 | None:intergenic | 50.0% | |
| TGGACACCAATGGAGGATAC+TGG | + | chr1_4:19376734-19376753 | Msa0154660:CDS | 50.0% | |
| CTGCAGCTGTTGAAAGAGGA+TGG | + | chr1_4:19376810-19376829 | Msa0154660:CDS | 50.0% | |
| ! | GCAAGTTGAGGAAGGTGAGA+TGG | - | chr1_4:19376851-19376870 | None:intergenic | 50.0% |
| CTACTGGCAAACCGCAATGA+AGG | - | chr1_4:19377034-19377053 | None:intergenic | 50.0% | |
| CAGCACAGTGAAGATGTTGG+AGG | - | chr1_4:19377093-19377112 | None:intergenic | 50.0% | |
| CTCCAACATCTTCACTGTGC+TGG | + | chr1_4:19377091-19377110 | Msa0154660:intron | 50.0% | |
| ACCCAGCACAGTGAAGATGT+TGG | - | chr1_4:19377096-19377115 | None:intergenic | 50.0% | |
| GGATTAAGTCTCGCATTGCC+TGG | + | chr1_4:19377125-19377144 | Msa0154660:intron | 50.0% | |
| TCTCGCATTGCCTGGAGATA+TGG | + | chr1_4:19377133-19377152 | Msa0154660:intron | 50.0% | |
| GCAGCTCTCATCATACAAGC+CGG | + | chr1_4:19377181-19377200 | Msa0154660:intron | 50.0% | |
| GGATACCCAACAAGAGGTCT+AGG | - | chr1_4:19377262-19377281 | None:intergenic | 50.0% | |
| GATGCAGGATACCCAACAAG+AGG | - | chr1_4:19377268-19377287 | None:intergenic | 50.0% | |
| ! | TCCTGCATCCTCCACGTTTT+AGG | + | chr1_4:19377279-19377298 | Msa0154660:intron | 50.0% |
| CCAATGAGCCTAAAACGTGG+AGG | - | chr1_4:19377290-19377309 | None:intergenic | 50.0% | |
| !! | CCTCCACGTTTTAGGCTCAT+TGG | + | chr1_4:19377287-19377306 | Msa0154660:intron | 50.0% |
| GGACCAATGAGCCTAAAACG+TGG | - | chr1_4:19377293-19377312 | None:intergenic | 50.0% | |
| GCAAATAAGGAGGCTAGAGG+GGG | - | chr1_4:19377359-19377378 | None:intergenic | 50.0% | |
| CGCAAATAAGGAGGCTAGAG+GGG | - | chr1_4:19377360-19377379 | None:intergenic | 50.0% | |
| GTCGCAAATAAGGAGGCTAG+AGG | - | chr1_4:19377362-19377381 | None:intergenic | 50.0% | |
| AGGACCGATGTTCGATCTCT+AGG | - | chr1_4:19377440-19377459 | None:intergenic | 50.0% | |
| ! | CAGTGCTGAGATCATGAACG+AGG | - | chr1_4:19377460-19377479 | None:intergenic | 50.0% |
| TGACAACTATCCAAGGGGTG+TGG | - | chr1_4:19377497-19377516 | None:intergenic | 50.0% | |
| GCAATGGCTGTACTCCATCA+TGG | - | chr1_4:19378030-19378049 | None:intergenic | 50.0% | |
| ! | TTTTGACGTTTCGACACCGG+AGG | + | chr1_4:19378119-19378138 | Msa0154660:CDS | 50.0% |
| !! | TCAAGCATTGGTCCACCGTA+AGG | - | chr1_4:19378280-19378299 | None:intergenic | 50.0% |
| !! | TGCCGGTTCGGCAAATAACA+AGG | + | chr1_4:19378391-19378410 | Msa0154660:intron | 50.0% |
| GACCCTGGACTTCTGCTTAA+AGG | + | chr1_4:19378516-19378535 | Msa0154660:intron | 50.0% | |
| CCACCTTTAAGCAGAAGTCC+AGG | - | chr1_4:19378522-19378541 | None:intergenic | 50.0% | |
| CCTGGACTTCTGCTTAAAGG+TGG | + | chr1_4:19378519-19378538 | Msa0154660:intron | 50.0% | |
| CTGCTTAAAGGTGGTGAGGT+CGG | + | chr1_4:19378528-19378547 | Msa0154660:intron | 50.0% | |
| GGTGAGTCACATGTGGTCTA+CGG | - | chr1_4:19378594-19378613 | None:intergenic | 50.0% | |
| ! | CTCTGCAGTCTTATGAGACC+TGG | + | chr1_4:19379445-19379464 | Msa0154660:CDS | 50.0% |
| CATACGAGAAGTCCTTCACC+AGG | - | chr1_4:19379466-19379485 | None:intergenic | 50.0% | |
| !!! | CAGACCTTTTCGGGTGAATG+CGG | + | chr1_4:19379623-19379642 | Msa0154660:CDS | 50.0% |
| CTTACCGCATTCACCCGAAA+AGG | - | chr1_4:19379630-19379649 | None:intergenic | 50.0% | |
| ACAGCAATGTAGGCGTGAAC+TGG | - | chr1_4:19380069-19380088 | None:intergenic | 50.0% | |
| CACAAACCTTTGCCTCCACA+AGG | - | chr1_4:19380218-19380237 | None:intergenic | 50.0% | |
| ATTTGGTAGATGTCCCCCCA+TGG | - | chr1_4:19381409-19381428 | None:intergenic | 50.0% | |
| ACTGTGCTGGGTGTGAAGAG+TGG | + | chr1_4:19377104-19377123 | Msa0154660:intron | 55.0% | |
| GCCTAAAACGTGGAGGATGC+AGG | - | chr1_4:19377283-19377302 | None:intergenic | 55.0% | |
| CTCATTGGTCCTGAGCGTGA+GGG | + | chr1_4:19377302-19377321 | Msa0154660:intron | 55.0% | |
| TCATTGGTCCTGAGCGTGAG+GGG | + | chr1_4:19377303-19377322 | Msa0154660:intron | 55.0% | |
| CTAGAGGGGGACCACAATGA+AGG | - | chr1_4:19377346-19377365 | None:intergenic | 55.0% | |
| TTGTGTTGGGTGTGAAGGGG+TGG | + | chr1_4:19377398-19377417 | Msa0154660:intron | 55.0% | |
| ACTTACTGAGCCACACCCCT+TGG | + | chr1_4:19377484-19377503 | Msa0154660:intron | 55.0% | |
| !! | CAACCCAATCTGTGCCGGTT+CGG | + | chr1_4:19378379-19378398 | Msa0154660:intron | 55.0% |
| TTGCCGAACCGGCACAGATT+GGG | - | chr1_4:19378385-19378404 | None:intergenic | 55.0% | |
| TTTGCCGAACCGGCACAGAT+TGG | - | chr1_4:19378386-19378405 | None:intergenic | 55.0% | |
| TCTCACCCGTAAGGATGTGG+TGG | + | chr1_4:19378494-19378513 | Msa0154660:intron | 55.0% | |
| AGGGTCCACCACATCCTTAC+GGG | - | chr1_4:19378502-19378521 | None:intergenic | 55.0% | |
| CAGGGTCCACCACATCCTTA+CGG | - | chr1_4:19378503-19378522 | None:intergenic | 55.0% | |
| GAGTCACATGTGGTCTACGG+TGG | - | chr1_4:19378591-19378610 | None:intergenic | 55.0% | |
| ATGCTGGGGTGAGTCACATG+TGG | - | chr1_4:19378601-19378620 | None:intergenic | 55.0% | |
| !! | AGGGGTGTTACAGGTCGGTT+TGG | + | chr1_4:19379120-19379139 | Msa0154660:intron | 55.0% |
| ! | CACGCCTACATTGCTGTTCC+AGG | + | chr1_4:19380072-19380091 | Msa0154660:CDS | 55.0% |
| ! | GCCTACATTGCTGTTCCAGG+CGG | + | chr1_4:19380075-19380094 | Msa0154660:CDS | 55.0% |
| ACCGCCTGGAACAGCAATGT+AGG | - | chr1_4:19380079-19380098 | None:intergenic | 55.0% | |
| AGGTAGGATGTTCTACCGCC+TGG | - | chr1_4:19380093-19380112 | None:intergenic | 55.0% | |
| GCTCATTGGTCCTGAGCGTG+AGG | + | chr1_4:19377301-19377320 | Msa0154660:intron | 60.0% | |
| CATTGGTCCTGAGCGTGAGG+GGG | + | chr1_4:19377304-19377323 | Msa0154660:intron | 60.0% | |
| !! | CGTAAGGATGTGGTGGACCC+TGG | + | chr1_4:19378501-19378520 | Msa0154660:intron | 60.0% |
| CAAGGAGGGGCTCGACATAC+CGG | + | chr1_4:19382002-19382021 | Msa0154660:CDS | 60.0% | |
| CAACACACCCCCTCACGCTC+AGG | - | chr1_4:19377314-19377333 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 19376598 | 19382392 | 19376598 | ID=Msa0154660;Name=Msa0154660 |
| chr1_4 | mRNA | 19376598 | 19382392 | 19376598 | ID=Msa0154660-mRNA-1;Parent=Msa0154660;Name=Msa0154660-mRNA-1;_AED=0.22;_eAED=0.22;_QI=28|0.77|0.8|1|0.88|0.8|10|247|377 |
| chr1_4 | exon | 19376598 | 19376884 | 19376598 | ID=Msa0154660-mRNA-1:exon:7107;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19378043 | 19378188 | 19378043 | ID=Msa0154660-mRNA-1:exon:7108;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19379005 | 19379103 | 19379005 | ID=Msa0154660-mRNA-1:exon:7109;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19379199 | 19379267 | 19379199 | ID=Msa0154660-mRNA-1:exon:7110;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19379340 | 19379480 | 19379340 | ID=Msa0154660-mRNA-1:exon:7111;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19379555 | 19379644 | 19379555 | ID=Msa0154660-mRNA-1:exon:7112;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19380063 | 19380188 | 19380063 | ID=Msa0154660-mRNA-1:exon:7113;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19381784 | 19381859 | 19381784 | ID=Msa0154660-mRNA-1:exon:7114;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19381931 | 19382063 | 19381931 | ID=Msa0154660-mRNA-1:exon:7115;Parent=Msa0154660-mRNA-1 |
| chr1_4 | exon | 19382151 | 19382392 | 19382151 | ID=Msa0154660-mRNA-1:exon:7116;Parent=Msa0154660-mRNA-1 |
| chr1_4 | five_prime_UTR | 19376598 | 19376625 | 19376598 | ID=Msa0154660-mRNA-1:five_prime_utr;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19376626 | 19376884 | 19376626 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19378043 | 19378188 | 19378043 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19379005 | 19379103 | 19379005 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19379199 | 19379267 | 19379199 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19379340 | 19379480 | 19379340 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19379555 | 19379644 | 19379555 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19380063 | 19380188 | 19380063 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19381784 | 19381859 | 19381784 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | CDS | 19381931 | 19382058 | 19381931 | ID=Msa0154660-mRNA-1:cds;Parent=Msa0154660-mRNA-1 |
| chr1_4 | three_prime_UTR | 19382059 | 19382063 | 19382059 | ID=Msa0154660-mRNA-1:three_prime_utr;Parent=Msa0154660-mRNA-1 |
| chr1_4 | three_prime_UTR | 19382151 | 19382392 | 19382151 | ID=Msa0154660-mRNA-1:three_prime_utr;Parent=Msa0154660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
