Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156830 | GAU20131.1 | 62.656 | 241 | 82 | 3 | 1 | 241 | 1 | 233 | 1.58e-100 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156830 | A0A1S3THG1 | 58.036 | 224 | 92 | 2 | 7 | 229 | 163 | 385 | 2.87e-87 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0156830 | Msa0657970 | 0.804450 | 2.147242e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156830 | MtrunA17_Chr2g0309021 | 35.656 | 244 | 150 | 4 | 3 | 240 | 259 | 501 | 1.58e-42 | 151 |
| Msa0156830 | MtrunA17_Chr2g0305311 | 32.941 | 170 | 106 | 2 | 8 | 177 | 240 | 401 | 5.37e-21 | 91.7 |
| Msa0156830 | MtrunA17_Chr1g0180021 | 41.667 | 72 | 42 | 0 | 56 | 127 | 3 | 74 | 3.05e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156830 | AT3G30200.1 | 29.310 | 174 | 119 | 3 | 26 | 197 | 271 | 442 | 7.50e-17 | 80.1 |
| Msa0156830 | AT1G40087.1 | 28.141 | 199 | 129 | 5 | 6 | 197 | 131 | 322 | 1.51e-16 | 79.0 |
Find 58 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCGTTCAAAGGCGAATT+AGG | 0.236989 | 1_4:+23526065 | None:intergenic |
| GATGAAGTAGCTAGCTTCTT+TGG | 0.253415 | 1_4:-23526636 | Msa0156830:CDS |
| TATAAGTTCAGCCCTGGTTT+TGG | 0.253962 | 1_4:+23527466 | None:intergenic |
| TCTATTCTAGTTCTTGGAAA+TGG | 0.278988 | 1_4:-23527129 | Msa0156830:intron |
| TTTGTTGATGACTCTTTATC+TGG | 0.321483 | 1_4:+23527062 | None:intergenic |
| TATCTGGTGGATGGGTTTCA+AGG | 0.365390 | 1_4:+23527078 | None:intergenic |
| GATGTTATCGGAAGAGTGTT+TGG | 0.369609 | 1_4:-23526864 | Msa0156830:CDS |
| AGGTATATTTCTCCACGATT+TGG | 0.375888 | 1_4:+23527098 | None:intergenic |
| CTATTCTAGTTCTTGGAAAT+GGG | 0.376484 | 1_4:-23527128 | Msa0156830:intron |
| TTATTTCTAAATGTATTAGA+AGG | 0.377129 | 1_4:+23526795 | None:intergenic |
| CAAAATGAGCCCATTGAATT+CGG | 0.377399 | 1_4:+23527420 | None:intergenic |
| GAAAGCAAGGTTTACAAGCT+TGG | 0.403002 | 1_4:-23526706 | Msa0156830:CDS |
| ATGACTCTTTATCTGGTGGA+TGG | 0.411534 | 1_4:+23527069 | None:intergenic |
| TCTTAACATTTCAAAGAAGT+TGG | 0.415761 | 1_4:-23527531 | Msa0156830:CDS |
| AAGAGTGCGGTCCATGGGTA+TGG | 0.427528 | 1_4:-23526826 | Msa0156830:CDS |
| GCAAGCAAGTGATTCCTCAT+AGG | 0.430185 | 1_4:-23527258 | Msa0156830:CDS |
| ATTTCTCCGGATGATGTTAT+CGG | 0.436524 | 1_4:-23526876 | Msa0156830:CDS |
| ATGTTATCGGAAGAGTGTTT+GGG | 0.447187 | 1_4:-23526863 | Msa0156830:CDS |
| AAGAAGCTAGCTACTTCATC+AGG | 0.453698 | 1_4:+23526639 | None:intergenic |
| CAAGCAAGTGATTCCTCATA+GGG | 0.475249 | 1_4:-23527257 | Msa0156830:CDS |
| TAACAAGAACAAATTCAAAC+GGG | 0.477491 | 1_4:-23526930 | Msa0156830:intron |
| CTCTGGAAGAGTGCGGTCCA+TGG | 0.498752 | 1_4:-23526832 | Msa0156830:CDS |
| CTAACAAGAACAAATTCAAA+CGG | 0.499208 | 1_4:-23526931 | Msa0156830:intron |
| TGAATTCGGTCTACACCATC+AGG | 0.500209 | 1_4:+23527434 | None:intergenic |
| TATATAATCGATCCAAAACC+AGG | 0.500290 | 1_4:-23527478 | Msa0156830:CDS |
| CTACATCATCTGATACAGAT+TGG | 0.501330 | 1_4:-23526728 | Msa0156830:CDS |
| CGCACTCTTCCAGAGTGCTC+AGG | 0.505673 | 1_4:+23526840 | None:intergenic |
| GATTGCAATATCTCTTTGCT+AGG | 0.511310 | 1_4:+23527552 | None:intergenic |
| CATGATCCTCTTGCGTTCAA+AGG | 0.513614 | 1_4:+23526056 | None:intergenic |
| TGACTCTTTATCTGGTGGAT+GGG | 0.521264 | 1_4:+23527070 | None:intergenic |
| TCTGGAAGAGTGCGGTCCAT+GGG | 0.528729 | 1_4:-23526831 | Msa0156830:CDS |
| TGGTGTAGACCGAATTCAAT+GGG | 0.535158 | 1_4:-23527429 | Msa0156830:CDS |
| GTTGATGACTCTTTATCTGG+TGG | 0.536916 | 1_4:+23527065 | None:intergenic |
| GCTTTAGAACCACCCCTATG+AGG | 0.537263 | 1_4:+23527244 | None:intergenic |
| GTGTTTGGGCCTGAGCACTC+TGG | 0.542307 | 1_4:-23526849 | Msa0156830:CDS |
| AAAGGCGAATTAGGCTCACT+TGG | 0.546839 | 1_4:+23526074 | None:intergenic |
| GCTTACATTATAATGAAAGA+AGG | 0.550663 | 1_4:-23526669 | Msa0156830:CDS |
| TGATGAATCTGAGATTTCTC+CGG | 0.552458 | 1_4:-23526889 | Msa0156830:CDS |
| AGAGTGCGGTCCATGGGTAT+GGG | 0.554014 | 1_4:-23526825 | Msa0156830:CDS |
| ACTCTTCCGATAACATCATC+CGG | 0.554755 | 1_4:+23526870 | None:intergenic |
| ACTGCTTATAAGTTCAGCCC+TGG | 0.556492 | 1_4:+23527460 | None:intergenic |
| ATGGTGTAGACCGAATTCAA+TGG | 0.559958 | 1_4:-23527430 | Msa0156830:CDS |
| CTGATACAGATTGGAAAGCA+AGG | 0.567356 | 1_4:-23526719 | Msa0156830:CDS |
| AATTCGCCTTTGAACGCAAG+AGG | 0.571868 | 1_4:-23526062 | Msa0156830:CDS |
| ATCAACAAATGATGCAGCAA+TGG | 0.572679 | 1_4:-23527048 | Msa0156830:CDS |
| ACATTATAATGAAAGAAGGA+AGG | 0.601677 | 1_4:-23526665 | Msa0156830:CDS |
| TCTCTTTGCTAGGTCTTCAG+TGG | 0.601859 | 1_4:+23527562 | None:intergenic |
| AGGAACTGCTCCCATACCCA+TGG | 0.626193 | 1_4:+23526815 | None:intergenic |
| CTGAGCACTCTGGAAGAGTG+CGG | 0.635163 | 1_4:-23526839 | Msa0156830:CDS |
| CTGCGCATAGACAAACTATG+TGG | 0.645232 | 1_4:-23527508 | Msa0156830:CDS |
| AACGCAAGAGGATCATGTGG+TGG | 0.647331 | 1_4:-23526050 | Msa0156830:CDS |
| CTTATAAGCAGTGTTCCTGA+TGG | 0.665575 | 1_4:-23527449 | Msa0156830:CDS |
| ATGGGACAACAACCAAATCG+TGG | 0.666274 | 1_4:-23527110 | Msa0156830:CDS |
| CAAGTGATTCCTCATAGGGG+TGG | 0.670909 | 1_4:-23527253 | Msa0156830:CDS |
| ATATAATCGATCCAAAACCA+GGG | 0.675031 | 1_4:-23527477 | Msa0156830:CDS |
| TCGTTTGAAACCAGAAACAC+AGG | 0.675625 | 1_4:-23527390 | Msa0156830:intron |
| TTGAACGCAAGAGGATCATG+TGG | 0.676411 | 1_4:-23526053 | Msa0156830:CDS |
| AAGCAAGTGATTCCTCATAG+GGG | 0.734906 | 1_4:-23527256 | Msa0156830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTATTTGTTTTTTAAT+AGG | - | chr1_4:23526292-23526311 | Msa0156830:intron | 10.0% |
| !!! | ATTTGTATTTGTTTTTTAAT+AGG | - | chr1_4:23526292-23526311 | Msa0156830:intron | 10.0% |
| !!! | TTATTTCTAAATGTATTAGA+AGG | + | chr1_4:23526811-23526830 | None:intergenic | 15.0% |
| !! | AGTATTATTTAGTTAAAGAA+AGG | + | chr1_4:23527078-23527097 | None:intergenic | 15.0% |
| !!! | TTTAATTGTAAAGGTATAAA+TGG | - | chr1_4:23527155-23527174 | Msa0156830:intron | 15.0% |
| !!! | GTGTTTGTTTTAATTTTTTT+CGG | - | chr1_4:23527432-23527451 | Msa0156830:CDS | 15.0% |
| !!! | TTATTTCTAAATGTATTAGA+AGG | + | chr1_4:23526811-23526830 | None:intergenic | 15.0% |
| !! | AGTATTATTTAGTTAAAGAA+AGG | + | chr1_4:23527078-23527097 | None:intergenic | 15.0% |
| !!! | TTTAATTGTAAAGGTATAAA+TGG | - | chr1_4:23527155-23527174 | Msa0156830:intron | 15.0% |
| !!! | GTGTTTGTTTTAATTTTTTT+CGG | - | chr1_4:23527432-23527451 | Msa0156830:CDS | 15.0% |
| !! | GTTAAATTGGAATAAACTAT+TGG | - | chr1_4:23526590-23526609 | Msa0156830:intron | 20.0% |
| !! | TGTATTATTTAGTCAAAGAA+AGG | + | chr1_4:23527028-23527047 | None:intergenic | 20.0% |
| !! | AGATGATTGTTTAATTGTAA+AGG | - | chr1_4:23527146-23527165 | Msa0156830:intron | 20.0% |
| !! | GTTAAATTGGAATAAACTAT+TGG | - | chr1_4:23526590-23526609 | Msa0156830:intron | 20.0% |
| !! | TGTATTATTTAGTCAAAGAA+AGG | + | chr1_4:23527028-23527047 | None:intergenic | 20.0% |
| !! | AGATGATTGTTTAATTGTAA+AGG | - | chr1_4:23527146-23527165 | Msa0156830:intron | 20.0% |
| ! | TCTTAACATTTCAAAGAAGT+TGG | - | chr1_4:23526072-23526091 | Msa0156830:CDS | 25.0% |
| ! | GCTACAATTGTAAGTTAAAT+TGG | - | chr1_4:23526577-23526596 | Msa0156830:intron | 25.0% |
| !!! | ATAAACTATTGGTTTATGCA+TGG | - | chr1_4:23526601-23526620 | Msa0156830:intron | 25.0% |
| ! | CTAACAAGAACAAATTCAAA+CGG | - | chr1_4:23526672-23526691 | Msa0156830:CDS | 25.0% |
| ! | TAACAAGAACAAATTCAAAC+GGG | - | chr1_4:23526673-23526692 | Msa0156830:CDS | 25.0% |
| ! | GCTTACATTATAATGAAAGA+AGG | - | chr1_4:23526934-23526953 | Msa0156830:intron | 25.0% |
| ! | ACATTATAATGAAAGAAGGA+AGG | - | chr1_4:23526938-23526957 | Msa0156830:intron | 25.0% |
| ! | ATCATAACAGAACTTACATT+TGG | + | chr1_4:23526994-23527013 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCGGTAATTCTG+TGG | - | chr1_4:23527443-23527462 | Msa0156830:CDS | 25.0% |
| ! | TCTTAACATTTCAAAGAAGT+TGG | - | chr1_4:23526072-23526091 | Msa0156830:CDS | 25.0% |
| ! | GCTACAATTGTAAGTTAAAT+TGG | - | chr1_4:23526577-23526596 | Msa0156830:intron | 25.0% |
| !!! | ATAAACTATTGGTTTATGCA+TGG | - | chr1_4:23526601-23526620 | Msa0156830:intron | 25.0% |
| ! | CTAACAAGAACAAATTCAAA+CGG | - | chr1_4:23526672-23526691 | Msa0156830:CDS | 25.0% |
| ! | TAACAAGAACAAATTCAAAC+GGG | - | chr1_4:23526673-23526692 | Msa0156830:CDS | 25.0% |
| ! | GCTTACATTATAATGAAAGA+AGG | - | chr1_4:23526934-23526953 | Msa0156830:intron | 25.0% |
| ! | ACATTATAATGAAAGAAGGA+AGG | - | chr1_4:23526938-23526957 | Msa0156830:intron | 25.0% |
| ! | ATCATAACAGAACTTACATT+TGG | + | chr1_4:23526994-23527013 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCGGTAATTCTG+TGG | - | chr1_4:23527443-23527462 | Msa0156830:CDS | 25.0% |
| TATATAATCGATCCAAAACC+AGG | - | chr1_4:23526125-23526144 | Msa0156830:intron | 30.0% | |
| ATATAATCGATCCAAAACCA+GGG | - | chr1_4:23526126-23526145 | Msa0156830:intron | 30.0% | |
| !! | CATCTTTCTATTCTAGTTCT+TGG | - | chr1_4:23526468-23526487 | Msa0156830:intron | 30.0% |
| !! | TCTATTCTAGTTCTTGGAAA+TGG | - | chr1_4:23526474-23526493 | Msa0156830:intron | 30.0% |
| !! | CTATTCTAGTTCTTGGAAAT+GGG | - | chr1_4:23526475-23526494 | Msa0156830:intron | 30.0% |
| !! | TTTGTTGATGACTCTTTATC+TGG | + | chr1_4:23526544-23526563 | None:intergenic | 30.0% |
| TTTATGCATGGTTGTATATC+TGG | - | chr1_4:23526613-23526632 | Msa0156830:intron | 30.0% | |
| !! | GTTTATGCATGTTTTTGACT+TGG | - | chr1_4:23526635-23526654 | Msa0156830:CDS | 30.0% |
| GTCAAAGAAAGGAAAAAAGA+AGG | + | chr1_4:23527017-23527036 | None:intergenic | 30.0% | |
| ! | TTTCATCTATCATTTTCGAC+AGG | + | chr1_4:23527276-23527295 | None:intergenic | 30.0% |
| ! | GCTTAGTGTTTTTCTTAGTT+TGG | - | chr1_4:23527384-23527403 | Msa0156830:intron | 30.0% |
| TATATAATCGATCCAAAACC+AGG | - | chr1_4:23526125-23526144 | Msa0156830:intron | 30.0% | |
| ATATAATCGATCCAAAACCA+GGG | - | chr1_4:23526126-23526145 | Msa0156830:intron | 30.0% | |
| !! | CATCTTTCTATTCTAGTTCT+TGG | - | chr1_4:23526468-23526487 | Msa0156830:intron | 30.0% |
| !! | TCTATTCTAGTTCTTGGAAA+TGG | - | chr1_4:23526474-23526493 | Msa0156830:intron | 30.0% |
| !! | CTATTCTAGTTCTTGGAAAT+GGG | - | chr1_4:23526475-23526494 | Msa0156830:intron | 30.0% |
| !! | TTTGTTGATGACTCTTTATC+TGG | + | chr1_4:23526544-23526563 | None:intergenic | 30.0% |
| TTTATGCATGGTTGTATATC+TGG | - | chr1_4:23526613-23526632 | Msa0156830:intron | 30.0% | |
| !! | GTTTATGCATGTTTTTGACT+TGG | - | chr1_4:23526635-23526654 | Msa0156830:CDS | 30.0% |
| GTCAAAGAAAGGAAAAAAGA+AGG | + | chr1_4:23527017-23527036 | None:intergenic | 30.0% | |
| ! | TTTCATCTATCATTTTCGAC+AGG | + | chr1_4:23527276-23527295 | None:intergenic | 30.0% |
| ! | GCTTAGTGTTTTTCTTAGTT+TGG | - | chr1_4:23527384-23527403 | Msa0156830:intron | 30.0% |
| GATTGCAATATCTCTTTGCT+AGG | + | chr1_4:23526054-23526073 | None:intergenic | 35.0% | |
| CAAAATGAGCCCATTGAATT+CGG | + | chr1_4:23526186-23526205 | None:intergenic | 35.0% | |
| ACCAGAAACACAGGTAAAAT+TGG | - | chr1_4:23526222-23526241 | Msa0156830:intron | 35.0% | |
| ! | TCCAATTTTACCTGTGTTTC+TGG | + | chr1_4:23526226-23526245 | None:intergenic | 35.0% |
| TTCGAGAAAAAGACATGAGA+TGG | - | chr1_4:23526385-23526404 | Msa0156830:intron | 35.0% | |
| AGGTATATTTCTCCACGATT+TGG | + | chr1_4:23526508-23526527 | None:intergenic | 35.0% | |
| ATCAACAAATGATGCAGCAA+TGG | - | chr1_4:23526555-23526574 | Msa0156830:intron | 35.0% | |
| !!! | TATGCATGTTTTTGACTTGG+TGG | - | chr1_4:23526638-23526657 | Msa0156830:CDS | 35.0% |
| ! | TGATGAATCTGAGATTTCTC+CGG | - | chr1_4:23526714-23526733 | Msa0156830:CDS | 35.0% |
| ATTTCTCCGGATGATGTTAT+CGG | - | chr1_4:23526727-23526746 | Msa0156830:CDS | 35.0% | |
| !! | ATGTTATCGGAAGAGTGTTT+GGG | - | chr1_4:23526740-23526759 | Msa0156830:CDS | 35.0% |
| CTACATCATCTGATACAGAT+TGG | - | chr1_4:23526875-23526894 | Msa0156830:CDS | 35.0% | |
| ACATCATGTGAACTGATTGA+AGG | - | chr1_4:23527045-23527064 | Msa0156830:CDS | 35.0% | |
| ACTTCATGTCAACTGATTGA+AGG | - | chr1_4:23527095-23527114 | Msa0156830:CDS | 35.0% | |
| ! | TGAAGTTCTGATGCAATTGT+AGG | - | chr1_4:23527340-23527359 | Msa0156830:intron | 35.0% |
| GATTGCAATATCTCTTTGCT+AGG | + | chr1_4:23526054-23526073 | None:intergenic | 35.0% | |
| CAAAATGAGCCCATTGAATT+CGG | + | chr1_4:23526186-23526205 | None:intergenic | 35.0% | |
| ACCAGAAACACAGGTAAAAT+TGG | - | chr1_4:23526222-23526241 | Msa0156830:intron | 35.0% | |
| ! | TCCAATTTTACCTGTGTTTC+TGG | + | chr1_4:23526226-23526245 | None:intergenic | 35.0% |
| TTCGAGAAAAAGACATGAGA+TGG | - | chr1_4:23526385-23526404 | Msa0156830:intron | 35.0% | |
| AGGTATATTTCTCCACGATT+TGG | + | chr1_4:23526508-23526527 | None:intergenic | 35.0% | |
| ATCAACAAATGATGCAGCAA+TGG | - | chr1_4:23526555-23526574 | Msa0156830:intron | 35.0% | |
| !!! | TATGCATGTTTTTGACTTGG+TGG | - | chr1_4:23526638-23526657 | Msa0156830:CDS | 35.0% |
| ! | TGATGAATCTGAGATTTCTC+CGG | - | chr1_4:23526714-23526733 | Msa0156830:CDS | 35.0% |
| ATTTCTCCGGATGATGTTAT+CGG | - | chr1_4:23526727-23526746 | Msa0156830:CDS | 35.0% | |
| !! | ATGTTATCGGAAGAGTGTTT+GGG | - | chr1_4:23526740-23526759 | Msa0156830:CDS | 35.0% |
| CTACATCATCTGATACAGAT+TGG | - | chr1_4:23526875-23526894 | Msa0156830:CDS | 35.0% | |
| ACATCATGTGAACTGATTGA+AGG | - | chr1_4:23527045-23527064 | Msa0156830:CDS | 35.0% | |
| ACTTCATGTCAACTGATTGA+AGG | - | chr1_4:23527095-23527114 | Msa0156830:CDS | 35.0% | |
| ! | TGAAGTTCTGATGCAATTGT+AGG | - | chr1_4:23527340-23527359 | Msa0156830:intron | 35.0% |
| ! | TATAAGTTCAGCCCTGGTTT+TGG | + | chr1_4:23526140-23526159 | None:intergenic | 40.0% |
| CTTATAAGCAGTGTTCCTGA+TGG | - | chr1_4:23526154-23526173 | Msa0156830:intron | 40.0% | |
| ATGGTGTAGACCGAATTCAA+TGG | - | chr1_4:23526173-23526192 | Msa0156830:intron | 40.0% | |
| TGGTGTAGACCGAATTCAAT+GGG | - | chr1_4:23526174-23526193 | Msa0156830:intron | 40.0% | |
| ! | TCGTTTGAAACCAGAAACAC+AGG | - | chr1_4:23526213-23526232 | Msa0156830:intron | 40.0% |
| CAAGCAAGTGATTCCTCATA+GGG | - | chr1_4:23526346-23526365 | Msa0156830:intron | 40.0% | |
| AAGCAAGTGATTCCTCATAG+GGG | - | chr1_4:23526347-23526366 | Msa0156830:intron | 40.0% | |
| ! | TGACTCTTTATCTGGTGGAT+GGG | + | chr1_4:23526536-23526555 | None:intergenic | 40.0% |
| ATGACTCTTTATCTGGTGGA+TGG | + | chr1_4:23526537-23526556 | None:intergenic | 40.0% | |
| !! | GTTGATGACTCTTTATCTGG+TGG | + | chr1_4:23526541-23526560 | None:intergenic | 40.0% |
| ACTCTTCCGATAACATCATC+CGG | + | chr1_4:23526736-23526755 | None:intergenic | 40.0% | |
| !! | GATGTTATCGGAAGAGTGTT+TGG | - | chr1_4:23526739-23526758 | Msa0156830:CDS | 40.0% |
| CTGATACAGATTGGAAAGCA+AGG | - | chr1_4:23526884-23526903 | Msa0156830:CDS | 40.0% | |
| GAAAGCAAGGTTTACAAGCT+TGG | - | chr1_4:23526897-23526916 | Msa0156830:CDS | 40.0% | |
| AAGAAGCTAGCTACTTCATC+AGG | + | chr1_4:23526967-23526986 | None:intergenic | 40.0% | |
| ! | GATGAAGTAGCTAGCTTCTT+TGG | - | chr1_4:23526967-23526986 | Msa0156830:intron | 40.0% |
| AAGAAGCTAGCTACTTCATC+AGG | + | chr1_4:23526967-23526986 | None:intergenic | 40.0% | |
| ! | TATAAGTTCAGCCCTGGTTT+TGG | + | chr1_4:23526140-23526159 | None:intergenic | 40.0% |
| CTTATAAGCAGTGTTCCTGA+TGG | - | chr1_4:23526154-23526173 | Msa0156830:intron | 40.0% | |
| ATGGTGTAGACCGAATTCAA+TGG | - | chr1_4:23526173-23526192 | Msa0156830:intron | 40.0% | |
| TGGTGTAGACCGAATTCAAT+GGG | - | chr1_4:23526174-23526193 | Msa0156830:intron | 40.0% | |
| ! | TCGTTTGAAACCAGAAACAC+AGG | - | chr1_4:23526213-23526232 | Msa0156830:intron | 40.0% |
| CAAGCAAGTGATTCCTCATA+GGG | - | chr1_4:23526346-23526365 | Msa0156830:intron | 40.0% | |
| AAGCAAGTGATTCCTCATAG+GGG | - | chr1_4:23526347-23526366 | Msa0156830:intron | 40.0% | |
| ! | TGACTCTTTATCTGGTGGAT+GGG | + | chr1_4:23526536-23526555 | None:intergenic | 40.0% |
| ATGACTCTTTATCTGGTGGA+TGG | + | chr1_4:23526537-23526556 | None:intergenic | 40.0% | |
| !! | GTTGATGACTCTTTATCTGG+TGG | + | chr1_4:23526541-23526560 | None:intergenic | 40.0% |
| ACTCTTCCGATAACATCATC+CGG | + | chr1_4:23526736-23526755 | None:intergenic | 40.0% | |
| !! | GATGTTATCGGAAGAGTGTT+TGG | - | chr1_4:23526739-23526758 | Msa0156830:CDS | 40.0% |
| CTGATACAGATTGGAAAGCA+AGG | - | chr1_4:23526884-23526903 | Msa0156830:CDS | 40.0% | |
| GAAAGCAAGGTTTACAAGCT+TGG | - | chr1_4:23526897-23526916 | Msa0156830:CDS | 40.0% | |
| AAGAAGCTAGCTACTTCATC+AGG | + | chr1_4:23526967-23526986 | None:intergenic | 40.0% | |
| ! | GATGAAGTAGCTAGCTTCTT+TGG | - | chr1_4:23526967-23526986 | Msa0156830:intron | 40.0% |
| AAGAAGCTAGCTACTTCATC+AGG | + | chr1_4:23526967-23526986 | None:intergenic | 40.0% | |
| TCTCTTTGCTAGGTCTTCAG+TGG | + | chr1_4:23526044-23526063 | None:intergenic | 45.0% | |
| CTGCGCATAGACAAACTATG+TGG | - | chr1_4:23526095-23526114 | Msa0156830:intron | 45.0% | |
| ACTGCTTATAAGTTCAGCCC+TGG | + | chr1_4:23526146-23526165 | None:intergenic | 45.0% | |
| TGAATTCGGTCTACACCATC+AGG | + | chr1_4:23526172-23526191 | None:intergenic | 45.0% | |
| GCAAGCAAGTGATTCCTCAT+AGG | - | chr1_4:23526345-23526364 | Msa0156830:intron | 45.0% | |
| ATGGGACAACAACCAAATCG+TGG | - | chr1_4:23526493-23526512 | Msa0156830:intron | 45.0% | |
| ! | TATCTGGTGGATGGGTTTCA+AGG | + | chr1_4:23526528-23526547 | None:intergenic | 45.0% |
| AGAGCACGATCAGTTTAGTG+TGG | - | chr1_4:23527410-23527429 | Msa0156830:CDS | 45.0% | |
| AAAGGCGAATTAGGCTCACT+TGG | + | chr1_4:23527532-23527551 | None:intergenic | 45.0% | |
| CTTGCGTTCAAAGGCGAATT+AGG | + | chr1_4:23527541-23527560 | None:intergenic | 45.0% | |
| AATTCGCCTTTGAACGCAAG+AGG | - | chr1_4:23527541-23527560 | Msa0156830:CDS | 45.0% | |
| CATGATCCTCTTGCGTTCAA+AGG | + | chr1_4:23527550-23527569 | None:intergenic | 45.0% | |
| TTGAACGCAAGAGGATCATG+TGG | - | chr1_4:23527550-23527569 | Msa0156830:CDS | 45.0% | |
| TCTCTTTGCTAGGTCTTCAG+TGG | + | chr1_4:23526044-23526063 | None:intergenic | 45.0% | |
| CTGCGCATAGACAAACTATG+TGG | - | chr1_4:23526095-23526114 | Msa0156830:intron | 45.0% | |
| ACTGCTTATAAGTTCAGCCC+TGG | + | chr1_4:23526146-23526165 | None:intergenic | 45.0% | |
| TGAATTCGGTCTACACCATC+AGG | + | chr1_4:23526172-23526191 | None:intergenic | 45.0% | |
| GCAAGCAAGTGATTCCTCAT+AGG | - | chr1_4:23526345-23526364 | Msa0156830:intron | 45.0% | |
| ATGGGACAACAACCAAATCG+TGG | - | chr1_4:23526493-23526512 | Msa0156830:intron | 45.0% | |
| ! | TATCTGGTGGATGGGTTTCA+AGG | + | chr1_4:23526528-23526547 | None:intergenic | 45.0% |
| AGAGCACGATCAGTTTAGTG+TGG | - | chr1_4:23527410-23527429 | Msa0156830:CDS | 45.0% | |
| AAAGGCGAATTAGGCTCACT+TGG | + | chr1_4:23527532-23527551 | None:intergenic | 45.0% | |
| CTTGCGTTCAAAGGCGAATT+AGG | + | chr1_4:23527541-23527560 | None:intergenic | 45.0% | |
| AATTCGCCTTTGAACGCAAG+AGG | - | chr1_4:23527541-23527560 | Msa0156830:CDS | 45.0% | |
| CATGATCCTCTTGCGTTCAA+AGG | + | chr1_4:23527550-23527569 | None:intergenic | 45.0% | |
| TTGAACGCAAGAGGATCATG+TGG | - | chr1_4:23527550-23527569 | Msa0156830:CDS | 45.0% | |
| CAAGTGATTCCTCATAGGGG+TGG | - | chr1_4:23526350-23526369 | Msa0156830:intron | 50.0% | |
| !! | GCTTTAGAACCACCCCTATG+AGG | + | chr1_4:23526362-23526381 | None:intergenic | 50.0% |
| AACGCAAGAGGATCATGTGG+TGG | - | chr1_4:23527553-23527572 | Msa0156830:CDS | 50.0% | |
| CAAGTGATTCCTCATAGGGG+TGG | - | chr1_4:23526350-23526369 | Msa0156830:intron | 50.0% | |
| !! | GCTTTAGAACCACCCCTATG+AGG | + | chr1_4:23526362-23526381 | None:intergenic | 50.0% |
| AACGCAAGAGGATCATGTGG+TGG | - | chr1_4:23527553-23527572 | Msa0156830:CDS | 50.0% | |
| ! | CTGAGCACTCTGGAAGAGTG+CGG | - | chr1_4:23526764-23526783 | Msa0156830:CDS | 55.0% |
| ! | TCTGGAAGAGTGCGGTCCAT+GGG | - | chr1_4:23526772-23526791 | Msa0156830:CDS | 55.0% |
| ! | AAGAGTGCGGTCCATGGGTA+TGG | - | chr1_4:23526777-23526796 | Msa0156830:CDS | 55.0% |
| AGAGTGCGGTCCATGGGTAT+GGG | - | chr1_4:23526778-23526797 | Msa0156830:CDS | 55.0% | |
| AGGAACTGCTCCCATACCCA+TGG | + | chr1_4:23526791-23526810 | None:intergenic | 55.0% | |
| ! | CTGAGCACTCTGGAAGAGTG+CGG | - | chr1_4:23526764-23526783 | Msa0156830:CDS | 55.0% |
| ! | TCTGGAAGAGTGCGGTCCAT+GGG | - | chr1_4:23526772-23526791 | Msa0156830:CDS | 55.0% |
| ! | AAGAGTGCGGTCCATGGGTA+TGG | - | chr1_4:23526777-23526796 | Msa0156830:CDS | 55.0% |
| AGAGTGCGGTCCATGGGTAT+GGG | - | chr1_4:23526778-23526797 | Msa0156830:CDS | 55.0% | |
| AGGAACTGCTCCCATACCCA+TGG | + | chr1_4:23526791-23526810 | None:intergenic | 55.0% | |
| GTGTTTGGGCCTGAGCACTC+TGG | - | chr1_4:23526754-23526773 | Msa0156830:CDS | 60.0% | |
| ! | CGCACTCTTCCAGAGTGCTC+AGG | + | chr1_4:23526766-23526785 | None:intergenic | 60.0% |
| ! | CTCTGGAAGAGTGCGGTCCA+TGG | - | chr1_4:23526771-23526790 | Msa0156830:CDS | 60.0% |
| GTGTTTGGGCCTGAGCACTC+TGG | - | chr1_4:23526754-23526773 | Msa0156830:CDS | 60.0% | |
| ! | CGCACTCTTCCAGAGTGCTC+AGG | + | chr1_4:23526766-23526785 | None:intergenic | 60.0% |
| ! | CTCTGGAAGAGTGCGGTCCA+TGG | - | chr1_4:23526771-23526790 | Msa0156830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 23526037 | 23527588 | 23526037 | ID=Msa0156830;Name=Msa0156830 |
| chr1_4 | mRNA | 23526037 | 23527588 | 23526037 | ID=Msa0156830-mRNA-1;Parent=Msa0156830;Name=Msa0156830-mRNA-1;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.2|1|1|5|0|261 |
| chr1_4 | exon | 23527391 | 23527588 | 23527391 | ID=Msa0156830-mRNA-1:exon:8255;Parent=Msa0156830-mRNA-1 |
| chr1_4 | exon | 23527219 | 23527311 | 23527219 | ID=Msa0156830-mRNA-1:exon:8254;Parent=Msa0156830-mRNA-1 |
| chr1_4 | exon | 23527036 | 23527141 | 23527036 | ID=Msa0156830-mRNA-1:exon:8253;Parent=Msa0156830-mRNA-1 |
| chr1_4 | exon | 23526629 | 23526945 | 23526629 | ID=Msa0156830-mRNA-1:exon:8252;Parent=Msa0156830-mRNA-1 |
| chr1_4 | exon | 23526037 | 23526108 | 23526037 | ID=Msa0156830-mRNA-1:exon:8251;Parent=Msa0156830-mRNA-1 |
| chr1_4 | CDS | 23527391 | 23527588 | 23527391 | ID=Msa0156830-mRNA-1:cds;Parent=Msa0156830-mRNA-1 |
| chr1_4 | CDS | 23527219 | 23527311 | 23527219 | ID=Msa0156830-mRNA-1:cds;Parent=Msa0156830-mRNA-1 |
| chr1_4 | CDS | 23527036 | 23527141 | 23527036 | ID=Msa0156830-mRNA-1:cds;Parent=Msa0156830-mRNA-1 |
| chr1_4 | CDS | 23526629 | 23526945 | 23526629 | ID=Msa0156830-mRNA-1:cds;Parent=Msa0156830-mRNA-1 |
| chr1_4 | CDS | 23526037 | 23526108 | 23526037 | ID=Msa0156830-mRNA-1:cds;Parent=Msa0156830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
