AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159450 MtrunA17_Chr7g0246631 50.000 80 36 1 5 84 147 222 2.19e-16 72.8
Msa0159450 MtrunA17_Chr8g0350321 47.500 80 38 1 5 84 171 246 1.76e-15 70.1
Msa0159450 MtrunA17_Chr1g0203671 41.250 80 43 1 5 84 151 226 4.53e-13 63.2
Msa0159450 MtrunA17_Chr6g0472471 43.210 81 40 2 5 85 125 199 4.41e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159450 AT4G00730.2 45.000 80 40 1 5 84 190 265 1.94e-15 70.5
Msa0159450 AT4G00730.1 45.000 80 40 1 5 84 190 265 2.12e-15 70.5
Msa0159450 AT3G61150.1 45.000 80 40 1 5 84 166 241 6.14e-15 68.9

Find 216 sgRNAs with CRISPR-Local

Find 650 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTCGTTCTTTGAAAAT+TGG 0.138677 1_4:-29919210 Msa0159450:five_prime_UTR
ACTGAGCTTGTTTGATTTAA+TGG 0.143745 1_4:-29918556 Msa0159450:five_prime_UTR
CCTGATGAAATAACATTTAT+TGG 0.149028 1_4:-29918456 Msa0159450:five_prime_UTR
ATTATCAACACAAGCCATTT+TGG 0.174051 1_4:+29919136 None:intergenic
GGGTTGCCTTGTGCTGATTC+TGG 0.201078 1_4:-29917907 Msa0159450:five_prime_UTR
ATTTGGATGCTGAGCTTTAC+TGG 0.208819 1_4:+29919453 None:intergenic
CCACCGTGCGGCTCCGATTC+TGG 0.220360 1_4:-29917532 Msa0159450:five_prime_UTR
TTCGTGGAATGCAATGGTTT+TGG 0.233640 1_4:-29918610 Msa0159450:five_prime_UTR
AATGAACTATCTCATAGATT+TGG 0.247258 1_4:-29917928 Msa0159450:five_prime_UTR
CCCGTCTCTTGTTCCTTTGT+CGG 0.248912 1_4:+29916365 None:intergenic
ATTCTAAGGCTACTTGTCTA+AGG 0.250611 1_4:+29917827 None:intergenic
GAGGATGAGTAGTAGGAATT+TGG 0.260487 1_4:-29918634 Msa0159450:five_prime_UTR
ACTAACAGAATATCGCAATT+TGG 0.263511 1_4:-29917678 Msa0159450:five_prime_UTR
GCTCAATGGGAGAATGTTTC+AGG 0.264221 1_4:-29918087 Msa0159450:five_prime_UTR
TATTAGTGCTTGTTCCAAAA+TGG 0.266556 1_4:-29919150 Msa0159450:five_prime_UTR
AGCTACACATTGTAAGAATT+CGG 0.288530 1_4:-29917088 Msa0159450:five_prime_UTR
TGTTTGTCTGAGATCGTTCC+TGG 0.299666 1_4:-29917131 Msa0159450:five_prime_UTR
TGGTAATAGGCTAGGTTCTT+AGG 0.300430 1_4:+29918138 None:intergenic
CAAATTTAGCCATGTTCTTC+AGG 0.302340 1_4:+29918274 None:intergenic
CCAATAAATGTTATTTCATC+AGG 0.305107 1_4:+29918456 None:intergenic
AGTCAGAGAAGTTTAAAATT+TGG 0.308378 1_4:-29917341 Msa0159450:five_prime_UTR
CAAGTCCACAAGATTGCTTC+CGG 0.318205 1_4:+29918023 None:intergenic
AAGTATTGATTGAGTGAGTT+AGG 0.329271 1_4:+29919318 None:intergenic
ACTTTCGTTCTTTGAAAATT+GGG 0.331700 1_4:-29919209 Msa0159450:five_prime_UTR
GATAAGCAGAAACTGGTAAT+AGG 0.333863 1_4:+29918125 None:intergenic
CTGAGAGGAATTTGGTTACT+TGG 0.334061 1_4:-29918930 Msa0159450:five_prime_UTR
CTTGGAATTGTTTGATTAGT+GGG 0.335151 1_4:-29918912 Msa0159450:five_prime_UTR
GTTGAAGTTGTTTAGAGAAA+TGG 0.335739 1_4:-29918860 Msa0159450:five_prime_UTR
AAAATGGCTTGTGTTGATAA+TGG 0.336282 1_4:-29919134 Msa0159450:five_prime_UTR
AAGCAAATGATTGATGTGTT+TGG 0.339748 1_4:-29918378 Msa0159450:five_prime_UTR
TGTAATGCCTGAGAGGAATT+TGG 0.342826 1_4:-29918938 Msa0159450:five_prime_UTR
GTAGATTCTGGCCATTCATT+TGG 0.344151 1_4:+29919436 None:intergenic
GACAGAGTTTGTGCACGTTC+TGG 0.347283 1_4:-29915465 Msa0159450:CDS
GCTACACATTGTAAGAATTC+GGG 0.350667 1_4:-29917087 Msa0159450:five_prime_UTR
GAAGAAGGGGTTACGGAGGA+AGG 0.353573 1_4:+29919397 None:intergenic
AAAATGTGACTCAAATTCTA+AGG 0.356064 1_4:+29917813 None:intergenic
TGGTTGAAATTGCTATAAAT+AGG 0.360277 1_4:-29917227 Msa0159450:five_prime_UTR
GTTGCTAGGGTGATGTTTGA+TGG 0.361333 1_4:-29919055 Msa0159450:five_prime_UTR
CGGTTCATGGGAGTGTGATT+AGG 0.363658 1_4:-29918749 Msa0159450:five_prime_UTR
AGAGATGGGGCGTGAGAAGA+AGG 0.368251 1_4:+29919382 None:intergenic
GCATTCTTTGTGCGTGTGCT+TGG 0.372501 1_4:-29918434 Msa0159450:five_prime_UTR
ATGAACTATCTCATAGATTT+GGG 0.373215 1_4:-29917927 Msa0159450:five_prime_UTR
AATTGCTATAAATAGGTGTT+TGG 0.374168 1_4:-29917220 Msa0159450:five_prime_UTR
TGGAATGGTGAGTCGGGATT+TGG 0.379452 1_4:-29919035 Msa0159450:five_prime_UTR
AGCAAATGATTGATGTGTTT+GGG 0.382492 1_4:-29918377 Msa0159450:five_prime_UTR
ATCCATGTCAACAAGAAGTT+TGG 0.383372 1_4:+29918161 None:intergenic
TCTGACTACAAAATCAAGAT+TGG 0.384014 1_4:+29917357 None:intergenic
CATTCTTTGTGCGTGTGCTT+GGG 0.385691 1_4:-29918433 Msa0159450:five_prime_UTR
TCAAGAGAATATGTCTAATC+AGG 0.386275 1_4:+29917044 None:intergenic
GTGTGATTAGGTTGTTTATG+AGG 0.388270 1_4:-29918737 Msa0159450:five_prime_UTR
GACAATGGTTTGTGCAGTTA+CGG 0.391353 1_4:-29918809 Msa0159450:five_prime_UTR
CTCACCTGAGTCATTGTTAT+GGG 0.400214 1_4:-29918241 Msa0159450:five_prime_UTR
CATAAATGATAAGCAGAAAC+TGG 0.401288 1_4:+29918118 None:intergenic
AAGAACATGGCTAAATTTGA+TGG 0.402574 1_4:-29918270 Msa0159450:five_prime_UTR
GAATTCCTTGGTTGGTTGCT+AGG 0.403173 1_4:-29919069 Msa0159450:five_prime_UTR
TTATGCAGTGGCTGCTCAAT+GGG 0.406358 1_4:-29918100 Msa0159450:five_prime_UTR
CTGATGAAGGAAAGAAAGTT+AGG 0.406971 1_4:-29918054 Msa0159450:five_prime_UTR
ACTTGGAATTGTTTGATTAG+TGG 0.408097 1_4:-29918913 Msa0159450:five_prime_UTR
TCTCACCTGAGTCATTGTTA+TGG 0.410094 1_4:-29918242 Msa0159450:five_prime_UTR
AAGTCCACAAGATTGCTTCC+GGG 0.423003 1_4:+29918024 None:intergenic
AAAGAAGGAAAATCGGTTCA+TGG 0.424672 1_4:-29918762 Msa0159450:five_prime_UTR
TGGAGGATCTTAGTTTATAT+AGG 0.427718 1_4:-29917736 Msa0159450:five_prime_UTR
TCAAGAGAGACGTTTACTTA+GGG 0.428224 1_4:-29918194 Msa0159450:five_prime_UTR
ATGGGCAGGCTGAGAATTAG+AGG 0.430809 1_4:-29918841 Msa0159450:five_prime_UTR
TTTCCAAAGGGTAGGAATCC+TGG 0.430905 1_4:-29918889 Msa0159450:five_prime_UTR
TAACCAGGATTCCTACCCTT+TGG 0.432164 1_4:+29918886 None:intergenic
AATTCCTTGGTTGGTTGCTA+GGG 0.440056 1_4:-29919068 Msa0159450:five_prime_UTR
TTGAAGTTGTTTAGAGAAAT+GGG 0.440354 1_4:-29918859 Msa0159450:five_prime_UTR
ATGAAAGTTCAAGTGCAGAT+AGG 0.440413 1_4:-29918497 Msa0159450:five_prime_UTR
AAGAAGGGGTTACGGAGGAA+GGG 0.444669 1_4:+29919398 None:intergenic
GCTTGTTTGATTTAATGGTT+GGG 0.447392 1_4:-29918551 Msa0159450:five_prime_UTR
AGATGAAGAGGAAGAAGAGA+TGG 0.451225 1_4:+29919367 None:intergenic
GTTTGATGGAATGGTGAGTC+GGG 0.451653 1_4:-29919041 Msa0159450:five_prime_UTR
GAAATCTCACTAATAATAGT+TGG 0.456589 1_4:+29915540 None:intergenic
TTCAAGTGCAGATAGGGGTT+TGG 0.456981 1_4:-29918490 Msa0159450:five_prime_UTR
AGACTTAAAAGAAGGAAAAT+CGG 0.457909 1_4:-29918769 Msa0159450:five_prime_UTR
AGCTTGTTTGATTTAATGGT+TGG 0.459621 1_4:-29918552 Msa0159450:five_prime_UTR
TTCAAGAGAGACGTTTACTT+AGG 0.460527 1_4:-29918195 Msa0159450:five_prime_UTR
GTTATCTTTATCTACCATCC+TGG 0.460769 1_4:+29917850 None:intergenic
TGAAAGTTCAAGTGCAGATA+GGG 0.460769 1_4:-29918496 Msa0159450:five_prime_UTR
GGCAAGAAACAGAAGGGTTT+AGG 0.460982 1_4:-29915409 None:intergenic
AGAAGGGGTTACGGAGGAAG+GGG 0.461907 1_4:+29919399 None:intergenic
GAGATGGGGCGTGAGAAGAA+GGG 0.464334 1_4:+29919383 None:intergenic
GTAGTAGGAATTTGGTTTCG+TGG 0.467432 1_4:-29918626 Msa0159450:five_prime_UTR
AAAACGCCATGCACCAGAAT+CGG 0.472982 1_4:+29917519 None:intergenic
TTTATGCAGTGGCTGCTCAA+TGG 0.474207 1_4:-29918101 Msa0159450:five_prime_UTR
TTTGGATGCTGAGCTTTACT+GGG 0.479514 1_4:+29919454 None:intergenic
GAAGAAGGTGGTGAGTGGTT+TGG 0.480861 1_4:+29919281 None:intergenic
AATTGAAAATGCTAGGTTGA+AGG 0.481602 1_4:-29915496 Msa0159450:CDS
AAATGGCTTGTGTTGATAAT+GGG 0.482037 1_4:-29919133 Msa0159450:five_prime_UTR
GATGAAGAGGAAGAAGAGAT+GGG 0.488019 1_4:+29919368 None:intergenic
ATCCTCCACGCATCTTTCCC+AGG 0.488443 1_4:+29917113 None:intergenic
GGCAAATCTTCTTGCAAATG+TGG 0.490410 1_4:-29918322 Msa0159450:five_prime_UTR
TAGAGGGAATGCTAGGACAA+TGG 0.492385 1_4:-29918824 Msa0159450:five_prime_UTR
CAAGTAACCAAATTCCTCTC+AGG 0.494968 1_4:+29918931 None:intergenic
GTTACGGCTTGTGGTCGGTC+GGG 0.503524 1_4:-29918793 Msa0159450:five_prime_UTR
GCAAATCTTCTTGCAAATGT+GGG 0.506278 1_4:-29918321 Msa0159450:five_prime_UTR
CTGACTACAAAATCAAGATT+GGG 0.509068 1_4:+29917358 None:intergenic
TGAGTCGGGATTTGGTTTCG+TGG 0.510221 1_4:-29919027 Msa0159450:five_prime_UTR
CCGGTGGAGAATTCCTTGGT+TGG 0.510818 1_4:-29919077 Msa0159450:five_prime_UTR
AATAGCTTTATGAGGAACAT+AGG 0.512021 1_4:+29919239 None:intergenic
ATTTCAAAGTGTCAAACAAT+CGG 0.513261 1_4:-29917984 Msa0159450:five_prime_UTR
AGGTGAAGGTGAAGATGAAG+AGG 0.513933 1_4:+29919355 None:intergenic
TAGATATGTATTGTAAATGC+AGG 0.515109 1_4:-29918686 Msa0159450:five_prime_UTR
TAGGGTGATGTTTGATGGAA+TGG 0.515772 1_4:-29919050 Msa0159450:five_prime_UTR
TCTGCTTATCATTTATGCAG+TGG 0.517278 1_4:-29918112 Msa0159450:five_prime_UTR
TTGTTATGGGCAAGTTTACT+CGG 0.522290 1_4:-29918228 Msa0159450:five_prime_UTR
TCCGACAAAGGAACAAGAGA+CGG 0.523267 1_4:-29916366 Msa0159450:CDS
AGATGGGGCGTGAGAAGAAG+GGG 0.525917 1_4:+29919384 None:intergenic
TGCTGATTCTGGACAATCAT+CGG 0.526031 1_4:-29917896 Msa0159450:five_prime_UTR
TGCCAAACTTCTTGTTGACA+TGG 0.526470 1_4:-29918163 Msa0159450:five_prime_UTR
TTGTCACAATTTGAACATGT+AGG 0.526784 1_4:+29915564 None:intergenic
ATTCTGTGGGCACTGCTACA+AGG 0.528946 1_4:-29917433 Msa0159450:five_prime_UTR
GTTTGATTTAATGGTTGGGA+TGG 0.529151 1_4:-29918547 Msa0159450:five_prime_UTR
ACTGATGGGTATGTTAAAGT+TGG 0.530765 1_4:-29918991 Msa0159450:five_prime_UTR
CAGAGAGAATTGCAAAAGCC+AGG 0.531321 1_4:-29917868 Msa0159450:five_prime_UTR
AGTTACGGCTTGTGGTCGGT+CGG 0.531988 1_4:-29918794 Msa0159450:five_prime_UTR
AAAGTGGCGAGAGTAGATTC+TGG 0.532443 1_4:+29919424 None:intergenic
AACAAGCTCAGTCCATCCTC+AGG 0.533163 1_4:+29918567 None:intergenic
AGGTAGCTGCAAGTTTCTCA+TGG 0.533323 1_4:-29917716 Msa0159450:five_prime_UTR
AAGAAGGAAAATCGGTTCAT+GGG 0.534284 1_4:-29918761 Msa0159450:five_prime_UTR
AAGCTCAGCATCCAAATGAA+TGG 0.534703 1_4:-29919447 Msa0159450:five_prime_UTR
TTCTAAGGCTACTTGTCTAA+GGG 0.535254 1_4:+29917828 None:intergenic
TCAACGTTTCCTGACAGCAT+TGG 0.536644 1_4:+29917307 None:intergenic
CAACCACTGAACAACCTTGG+AGG 0.539692 1_4:-29917753 Msa0159450:five_prime_UTR
GCGGCTCCGATTCTGGTGCA+TGG 0.541861 1_4:-29917525 Msa0159450:five_prime_UTR
GAAGGGCTTGAATTTGAAGA+AGG 0.544248 1_4:+29919266 None:intergenic
TTTGCCGGTGGAGAATTCCT+TGG 0.545949 1_4:-29919081 Msa0159450:five_prime_UTR
TTTGATTAGTGGGTTTCCAA+AGG 0.546258 1_4:-29918902 Msa0159450:five_prime_UTR
AGAGAGTCGACAAGAGCAAG+AGG 0.547069 1_4:-29916408 Msa0159450:CDS
GGGCTTGAATTTGAAGAAGG+TGG 0.548838 1_4:+29919269 None:intergenic
ATGAGGAACATAGGATGAGA+AGG 0.550598 1_4:+29919248 None:intergenic
GCAGAAACTGGTAATAGGCT+AGG 0.550998 1_4:+29918130 None:intergenic
GTGCAGTTACGGCTTGTGGT+CGG 0.552259 1_4:-29918798 Msa0159450:five_prime_UTR
GTTTGTGCAGTTACGGCTTG+TGG 0.557369 1_4:-29918802 Msa0159450:five_prime_UTR
TGAATGAAATTTAGCATCAG+TGG 0.558663 1_4:-29917618 Msa0159450:five_prime_UTR
GTCCATCCTCAGGATTCCCA+TGG 0.558710 1_4:+29918577 None:intergenic
TTAGACATATTCTCTTGAGA+TGG 0.560674 1_4:-29917039 Msa0159450:five_prime_UTR
TTGATTAGTGGGTTTCCAAA+GGG 0.560839 1_4:-29918901 Msa0159450:five_prime_UTR
GAGAATTGCAAAAGCCAGGA+TGG 0.564532 1_4:-29917864 Msa0159450:five_prime_UTR
AACAACTTCAACGCATAACC+AGG 0.566178 1_4:+29918871 None:intergenic
GATCTCAGACAAACAATCAA+AGG 0.567322 1_4:+29917139 None:intergenic
TGAGAATTAGAGGGAATGCT+AGG 0.567526 1_4:-29918831 Msa0159450:five_prime_UTR
GGTAGCTGCAAGTTTCTCAT+GGG 0.569511 1_4:-29917715 Msa0159450:five_prime_UTR
TCTTTGTGCGTGTGCTTGGG+CGG 0.569808 1_4:-29918430 Msa0159450:five_prime_UTR
AGAAGAATGCCTGAAGAACA+TGG 0.571760 1_4:-29918283 Msa0159450:five_prime_UTR
AAACAACCACTGAACAACCT+TGG 0.572690 1_4:-29917756 Msa0159450:five_prime_UTR
TTTGGTTTCGTGGAATGCAA+TGG 0.572846 1_4:-29918616 Msa0159450:five_prime_UTR
CAAGAGAGACGTTTACTTAG+GGG 0.580534 1_4:-29918193 Msa0159450:five_prime_UTR
GTGTCAAACAATCGGCGTGA+AGG 0.580662 1_4:-29917976 Msa0159450:five_prime_UTR
GTTTGTCTGAGATCGTTCCT+GGG 0.581994 1_4:-29917130 Msa0159450:five_prime_UTR
GTCTTCAAATTGAAAATGCT+AGG 0.584052 1_4:-29915503 Msa0159450:CDS
ATGAAGAGGAAGAAGAGATG+GGG 0.585824 1_4:+29919369 None:intergenic
GGCTTGTGTTGATAATGGGC+AGG 0.586734 1_4:-29919129 Msa0159450:five_prime_UTR
TGTTTGATGGAATGGTGAGT+CGG 0.587687 1_4:-29919042 Msa0159450:five_prime_UTR
AGTTGTTTAGAGAAATGGGC+AGG 0.588480 1_4:-29918855 Msa0159450:five_prime_UTR
CCGACAAAGGAACAAGAGAC+GGG 0.589475 1_4:-29916365 Msa0159450:CDS
CGGAACTGTTGAGTGAAGGC+AGG 0.589650 1_4:-29918410 Msa0159450:five_prime_UTR
GTTGGGATGGAGAGTGTGAA+AGG 0.590206 1_4:-29918534 Msa0159450:five_prime_UTR
CTTATTTGATGAGATTGAGA+TGG 0.591562 1_4:-29915436 Msa0159450:CDS
AGCATGTTCATGTTCATCCA+TGG 0.591682 1_4:-29919503 Msa0159450:five_prime_UTR
TGAGGAACATAGGATGAGAA+GGG 0.593238 1_4:+29919249 None:intergenic
GGTCGGGTAGACTTAAAAGA+AGG 0.594138 1_4:-29918777 Msa0159450:five_prime_UTR
AGAACATGGCTAAATTTGAT+GGG 0.599502 1_4:-29918269 Msa0159450:five_prime_UTR
CAATAAATGTTATTTCATCA+GGG 0.600195 1_4:+29918457 None:intergenic
CTTGCCCATAACAATGACTC+AGG 0.600215 1_4:+29918237 None:intergenic
GAACTCAATGATTGACTGAT+GGG 0.601028 1_4:-29919005 Msa0159450:five_prime_UTR
TGATTCTGGACAATCATCGG+TGG 0.603584 1_4:-29917893 Msa0159450:five_prime_UTR
TTGTAAATGCAGGAGAGTTG+AGG 0.607009 1_4:-29918676 Msa0159450:five_prime_UTR
GAGTGAGTTAGGAATTGTGA+AGG 0.607383 1_4:+29919329 None:intergenic
CAAATCTTCTTGCAAATGTG+GGG 0.607505 1_4:-29918320 Msa0159450:five_prime_UTR
TGAGTGGTTTGGCAATGAGA+AGG 0.607604 1_4:+29919292 None:intergenic
GGAACTCAATGATTGACTGA+TGG 0.611114 1_4:-29919006 Msa0159450:five_prime_UTR
TGGTGAAGGCAAGAAACAGA+AGG 0.611876 1_4:-29915416 Msa0159450:CDS
GGCGTGAGAAGAAGGGGTTA+CGG 0.611910 1_4:+29919390 None:intergenic
CCAACCAAGGAATTCTCCAC+CGG 0.620896 1_4:+29919077 None:intergenic
GAAAGTTCAAGTGCAGATAG+GGG 0.621100 1_4:-29918495 Msa0159450:five_prime_UTR
GATGGTGCTCATCGATGAGA+AGG 0.622187 1_4:-29917021 Msa0159450:intron
TGAAAGGTGGTGCATCGCCA+TGG 0.625681 1_4:+29919486 None:intergenic
ATCCATGGGAATCCTGAGGA+TGG 0.626380 1_4:-29918579 Msa0159450:five_prime_UTR
AATACCCGGAAGCAATCTTG+TGG 0.628479 1_4:-29918028 Msa0159450:five_prime_UTR
TTAGTGGGTTTCCAAAGGGT+AGG 0.629123 1_4:-29918897 Msa0159450:five_prime_UTR
TGATGAGATTGAGATGGTGA+AGG 0.630063 1_4:-29915430 Msa0159450:CDS
GATCCTCCAAGGTTGTTCAG+TGG 0.630118 1_4:+29917750 None:intergenic
CTACACATTGTAAGAATTCG+GGG 0.632868 1_4:-29917086 Msa0159450:five_prime_UTR
GATTCTGGACAATCATCGGT+GGG 0.636997 1_4:-29917892 Msa0159450:five_prime_UTR
TACACATTGTAAGAATTCGG+GGG 0.637569 1_4:-29917085 Msa0159450:five_prime_UTR
TCGTTCCTGGGAAAGATGCG+TGG 0.643650 1_4:-29917118 Msa0159450:five_prime_UTR
ATCACCCTAGCAACCAACCA+AGG 0.645075 1_4:+29919064 None:intergenic
AAATGTGGGGCTTATTGACG+AGG 0.649002 1_4:-29918307 Msa0159450:five_prime_UTR
ATATAAACTAAGATCCTCCA+AGG 0.650209 1_4:+29917739 None:intergenic
AACAAGAGACGGGAAAACAC+CGG 0.651664 1_4:-29916355 Msa0159450:intron
GTGAGAAGAAGGGGTTACGG+AGG 0.658457 1_4:+29919393 None:intergenic
GGCACTGCTACAAGGTATCG+AGG 0.659431 1_4:-29917425 Msa0159450:five_prime_UTR
AATTTGAAGAAGGTGGTGAG+TGG 0.664496 1_4:+29919276 None:intergenic
GCACCAGAATCGGAGCCGCA+CGG 0.664634 1_4:+29917529 None:intergenic
AAAAGAGTACAATCCGACAA+AGG 0.664827 1_4:-29916378 Msa0159450:CDS
GTGCAGATAGGGGTTTGGTG+AGG 0.665872 1_4:-29918485 Msa0159450:five_prime_UTR
TGGGCAGGCTGAGAATTAGA+GGG 0.668023 1_4:-29918840 Msa0159450:five_prime_UTR
ACACATTGTAAGAATTCGGG+GGG 0.668680 1_4:-29917084 Msa0159450:five_prime_UTR
GAGTGTGAAAGGTGAAGTTG+AGG 0.671225 1_4:-29918523 Msa0159450:five_prime_UTR
GGTGAAGGCAAGAAACAGAA+GGG 0.672932 1_4:-29915415 Msa0159450:CDS
TGGGCGGAACTGTTGAGTGA+AGG 0.673864 1_4:-29918414 Msa0159450:five_prime_UTR
AGAAAGTTAGGCATAATACC+CGG 0.674773 1_4:-29918042 Msa0159450:five_prime_UTR
TAAATGCAGGAGAGTTGAGG+CGG 0.675286 1_4:-29918673 Msa0159450:five_prime_UTR
TTGCATCCATGGGAATCCTG+AGG 0.677504 1_4:-29918583 Msa0159450:five_prime_UTR
CCAGAATCGGAGCCGCACGG+TGG 0.683066 1_4:+29917532 None:intergenic
ACGGAAAACTCATTTGACGA+AGG 0.684179 1_4:-29916441 Msa0159450:CDS
AATTGTGAAGGTGAAGGTGA+AGG 0.684637 1_4:+29919341 None:intergenic
GTTAGGAATTGTGAAGGTGA+AGG 0.685141 1_4:+29919335 None:intergenic
GTAGCTGCAAGTTTCTCATG+GGG 0.694431 1_4:-29917714 Msa0159450:five_prime_UTR
GATTGTCCAGAATCAGCACA+AGG 0.701391 1_4:+29917901 None:intergenic
TTCCTGGGAAAGATGCGTGG+AGG 0.701822 1_4:-29917115 Msa0159450:five_prime_UTR
AGACAGAGCTGCTGACACGA+AGG 0.703158 1_4:+29917276 None:intergenic
TTGATTGAAATTCCACCGTG+CGG 0.708191 1_4:-29917544 Msa0159450:five_prime_UTR
TGTTTGATGTAATGCCTGAG+AGG 0.710908 1_4:-29918945 Msa0159450:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAACAATTTTTTTAAAAAA+AGG + chr1_4:29918411-29918430 None:intergenic 10.0%
!!! CAAACAATTTTTTTAAAAAA+AGG + chr1_4:29918411-29918430 None:intergenic 10.0%
!!! TAATATGTTTCAGATATTTT+TGG - chr1_4:29919093-29919112 Msa0159450:five_prime_UTR 15.0%
!!! TAATATGTTTCAGATATTTT+TGG - chr1_4:29919093-29919112 Msa0159450:five_prime_UTR 15.0%
!!! TAAAAAACAATAGCTTTATG+AGG + chr1_4:29915683-29915702 None:intergenic 20.0%
!!! CAATAAATGTTATTTCATCA+GGG + chr1_4:29916457-29916476 None:intergenic 20.0%
!!! GAAATCTGTTTTTGAATTTA+TGG - chr1_4:29917981-29918000 Msa0159450:five_prime_UTR 20.0%
!!! GGATAATTTAAAACAGAATA+GGG + chr1_4:29918233-29918252 None:intergenic 20.0%
!!! TGGATAATTTAAAACAGAAT+AGG + chr1_4:29918234-29918253 None:intergenic 20.0%
!!! TAGACTGAGTTATTTTTTAT+TGG - chr1_4:29918374-29918393 Msa0159450:five_prime_UTR 20.0%
!!! AAATATAAAGAAGGTATTGT+TGG + chr1_4:29918647-29918666 None:intergenic 20.0%
!! TCTATACCTTAAAATAATGT+GGG + chr1_4:29918762-29918781 None:intergenic 20.0%
!! TTCTATACCTTAAAATAATG+TGG + chr1_4:29918763-29918782 None:intergenic 20.0%
!!! TTTAGAGGTATTGTTAATAT+TGG - chr1_4:29918862-29918881 Msa0159450:five_prime_UTR 20.0%
!!! AGTTGTTATTTGTTTTCTTT+TGG - chr1_4:29918916-29918935 Msa0159450:five_prime_UTR 20.0%
!!! GTTGTTATTTGTTTTCTTTT+GGG - chr1_4:29918917-29918936 Msa0159450:five_prime_UTR 20.0%
!!! AAGCTTTTATTTGGAAAATA+AGG + chr1_4:29918978-29918997 None:intergenic 20.0%
!! TAAAGTTTAGAAAAATTGTG+AGG + chr1_4:29919007-29919026 None:intergenic 20.0%
!! TTGAAATCTGAAAAAATAGT+AGG + chr1_4:29919060-29919079 None:intergenic 20.0%
!!! CATTTGTGTTATCTTTTTAA+TGG + chr1_4:29919222-29919241 None:intergenic 20.0%
!! AGTATATAATACCTTTATGA+TGG - chr1_4:29919311-29919330 Msa0159450:five_prime_UTR 20.0%
!!! TAAAAAACAATAGCTTTATG+AGG + chr1_4:29915683-29915702 None:intergenic 20.0%
!!! CAATAAATGTTATTTCATCA+GGG + chr1_4:29916457-29916476 None:intergenic 20.0%
!!! GAAATCTGTTTTTGAATTTA+TGG - chr1_4:29917981-29918000 Msa0159450:five_prime_UTR 20.0%
!!! GGATAATTTAAAACAGAATA+GGG + chr1_4:29918233-29918252 None:intergenic 20.0%
!!! TGGATAATTTAAAACAGAAT+AGG + chr1_4:29918234-29918253 None:intergenic 20.0%
!!! TAGACTGAGTTATTTTTTAT+TGG - chr1_4:29918374-29918393 Msa0159450:five_prime_UTR 20.0%
!!! AAATATAAAGAAGGTATTGT+TGG + chr1_4:29918647-29918666 None:intergenic 20.0%
!! TCTATACCTTAAAATAATGT+GGG + chr1_4:29918762-29918781 None:intergenic 20.0%
!! TTCTATACCTTAAAATAATG+TGG + chr1_4:29918763-29918782 None:intergenic 20.0%
!!! TTTAGAGGTATTGTTAATAT+TGG - chr1_4:29918862-29918881 Msa0159450:five_prime_UTR 20.0%
!!! AGTTGTTATTTGTTTTCTTT+TGG - chr1_4:29918916-29918935 Msa0159450:five_prime_UTR 20.0%
!!! GTTGTTATTTGTTTTCTTTT+GGG - chr1_4:29918917-29918936 Msa0159450:five_prime_UTR 20.0%
!!! AAGCTTTTATTTGGAAAATA+AGG + chr1_4:29918978-29918997 None:intergenic 20.0%
!! TAAAGTTTAGAAAAATTGTG+AGG + chr1_4:29919007-29919026 None:intergenic 20.0%
!! TTGAAATCTGAAAAAATAGT+AGG + chr1_4:29919060-29919079 None:intergenic 20.0%
!!! CATTTGTGTTATCTTTTTAA+TGG + chr1_4:29919222-29919241 None:intergenic 20.0%
!! AGTATATAATACCTTTATGA+TGG - chr1_4:29919311-29919330 Msa0159450:five_prime_UTR 20.0%
!! TACTTTCGTTCTTTGAAAAT+TGG - chr1_4:29915701-29915720 Msa0159450:intron 25.0%
!! ACTTTCGTTCTTTGAAAATT+GGG - chr1_4:29915702-29915721 Msa0159450:intron 25.0%
! TTGAAGTTGTTTAGAGAAAT+GGG - chr1_4:29916052-29916071 Msa0159450:intron 25.0%
! AGACTTAAAAGAAGGAAAAT+CGG - chr1_4:29916142-29916161 Msa0159450:intron 25.0%
! TAGATATGTATTGTAAATGC+AGG - chr1_4:29916225-29916244 Msa0159450:intron 25.0%
!!! CCAATAAATGTTATTTCATC+AGG + chr1_4:29916458-29916477 None:intergenic 25.0%
! CCTGATGAAATAACATTTAT+TGG - chr1_4:29916455-29916474 Msa0159450:intron 25.0%
!! ATTTCAAAGTGTCAAACAAT+CGG - chr1_4:29916927-29916946 Msa0159450:intron 25.0%
! AATGAACTATCTCATAGATT+TGG - chr1_4:29916983-29917002 Msa0159450:intron 25.0%
! ATGAACTATCTCATAGATTT+GGG - chr1_4:29916984-29917003 Msa0159450:intron 25.0%
! AAAATGTGACTCAAATTCTA+AGG + chr1_4:29917101-29917120 None:intergenic 25.0%
!! TAAGTTTCCTTGATTTTTAC+TGG - chr1_4:29917129-29917148 Msa0159450:five_prime_UTR 25.0%
!!! TTGTTTTTGATCAAATTCTG+TGG - chr1_4:29917464-29917483 Msa0159450:five_prime_UTR 25.0%
!!! TGTTTTTGATCAAATTCTGT+GGG - chr1_4:29917465-29917484 Msa0159450:five_prime_UTR 25.0%
!!! CATTTTTCAATGGAGATTTT+GGG + chr1_4:29917526-29917545 None:intergenic 25.0%
!!! TCATTTTTCAATGGAGATTT+TGG + chr1_4:29917527-29917546 None:intergenic 25.0%
!! AGTCAGAGAAGTTTAAAATT+TGG - chr1_4:29917570-29917589 Msa0159450:five_prime_UTR 25.0%
! TGGTTGAAATTGCTATAAAT+AGG - chr1_4:29917684-29917703 Msa0159450:five_prime_UTR 25.0%
! AATTGCTATAAATAGGTGTT+TGG - chr1_4:29917691-29917710 Msa0159450:five_prime_UTR 25.0%
! TAATCAGGATTCAAAAAGTT+TGG + chr1_4:29917855-29917874 None:intergenic 25.0%
!!! TGGTTGTTTTGTTATGATTT+TGG - chr1_4:29918001-29918020 Msa0159450:five_prime_UTR 25.0%
! ATTTATCAATCTTTGTATGC+AGG + chr1_4:29918183-29918202 None:intergenic 25.0%
! ATGTGATTTATACTTGAAGA+AGG + chr1_4:29918271-29918290 None:intergenic 25.0%
!! ATTGTTTTCTTTGTTGAAGA+CGG - chr1_4:29918451-29918470 Msa0159450:five_prime_UTR 25.0%
! ACCTTCTTTATATTTAGTTG+TGG - chr1_4:29918652-29918671 Msa0159450:five_prime_UTR 25.0%
! ACCACAACTAAATATAAAGA+AGG + chr1_4:29918656-29918675 None:intergenic 25.0%
!! GCTAAATTTTACTTCCAAAA+GGG + chr1_4:29918842-29918861 None:intergenic 25.0%
!! AGCTAAATTTTACTTCCAAA+AGG + chr1_4:29918843-29918862 None:intergenic 25.0%
!!! GAAGTAAAATTTAGCTTTAG+AGG - chr1_4:29918847-29918866 Msa0159450:five_prime_UTR 25.0%
! ATAAACATGTCAATTGTTAG+GGG + chr1_4:29918890-29918909 None:intergenic 25.0%
! CATAAACATGTCAATTGTTA+GGG + chr1_4:29918891-29918910 None:intergenic 25.0%
! ACATAAACATGTCAATTGTT+AGG + chr1_4:29918892-29918911 None:intergenic 25.0%
! ACAATTGACATGTTTATGTT+CGG - chr1_4:29918893-29918912 Msa0159450:five_prime_UTR 25.0%
!! AGGAAAGATAAGCTTTTATT+TGG + chr1_4:29918987-29919006 None:intergenic 25.0%
! ATTAAGAGTAAAGGTGAAAA+TGG + chr1_4:29919032-29919051 None:intergenic 25.0%
! TAGGATGAAATTAAGAGTAA+AGG + chr1_4:29919041-29919060 None:intergenic 25.0%
!!! AAGTTGATGTCATTTTTACA+TGG - chr1_4:29919243-29919262 Msa0159450:five_prime_UTR 25.0%
!!! TTTACATGGTTTTATCTTTC+TGG - chr1_4:29919257-29919276 Msa0159450:five_prime_UTR 25.0%
! GTATTATATACTCTAAGCTT+AGG + chr1_4:29919303-29919322 None:intergenic 25.0%
! GAAATCTCACTAATAATAGT+TGG + chr1_4:29919374-29919393 None:intergenic 25.0%
!! TAGCATTTTCAATTTGAAGA+CGG + chr1_4:29919409-29919428 None:intergenic 25.0%
!! TACTTTCGTTCTTTGAAAAT+TGG - chr1_4:29915701-29915720 Msa0159450:intron 25.0%
!! ACTTTCGTTCTTTGAAAATT+GGG - chr1_4:29915702-29915721 Msa0159450:intron 25.0%
! TTGAAGTTGTTTAGAGAAAT+GGG - chr1_4:29916052-29916071 Msa0159450:intron 25.0%
! AGACTTAAAAGAAGGAAAAT+CGG - chr1_4:29916142-29916161 Msa0159450:intron 25.0%
! TAGATATGTATTGTAAATGC+AGG - chr1_4:29916225-29916244 Msa0159450:intron 25.0%
!!! CCAATAAATGTTATTTCATC+AGG + chr1_4:29916458-29916477 None:intergenic 25.0%
! CCTGATGAAATAACATTTAT+TGG - chr1_4:29916455-29916474 Msa0159450:intron 25.0%
!! ATTTCAAAGTGTCAAACAAT+CGG - chr1_4:29916927-29916946 Msa0159450:intron 25.0%
! AATGAACTATCTCATAGATT+TGG - chr1_4:29916983-29917002 Msa0159450:intron 25.0%
! ATGAACTATCTCATAGATTT+GGG - chr1_4:29916984-29917003 Msa0159450:intron 25.0%
! AAAATGTGACTCAAATTCTA+AGG + chr1_4:29917101-29917120 None:intergenic 25.0%
!! TAAGTTTCCTTGATTTTTAC+TGG - chr1_4:29917129-29917148 Msa0159450:five_prime_UTR 25.0%
!!! TTGTTTTTGATCAAATTCTG+TGG - chr1_4:29917464-29917483 Msa0159450:five_prime_UTR 25.0%
!!! TGTTTTTGATCAAATTCTGT+GGG - chr1_4:29917465-29917484 Msa0159450:five_prime_UTR 25.0%
!!! CATTTTTCAATGGAGATTTT+GGG + chr1_4:29917526-29917545 None:intergenic 25.0%
!!! TCATTTTTCAATGGAGATTT+TGG + chr1_4:29917527-29917546 None:intergenic 25.0%
!! AGTCAGAGAAGTTTAAAATT+TGG - chr1_4:29917570-29917589 Msa0159450:five_prime_UTR 25.0%
! TGGTTGAAATTGCTATAAAT+AGG - chr1_4:29917684-29917703 Msa0159450:five_prime_UTR 25.0%
! AATTGCTATAAATAGGTGTT+TGG - chr1_4:29917691-29917710 Msa0159450:five_prime_UTR 25.0%
! TAATCAGGATTCAAAAAGTT+TGG + chr1_4:29917855-29917874 None:intergenic 25.0%
!!! TGGTTGTTTTGTTATGATTT+TGG - chr1_4:29918001-29918020 Msa0159450:five_prime_UTR 25.0%
! ATTTATCAATCTTTGTATGC+AGG + chr1_4:29918183-29918202 None:intergenic 25.0%
! ATGTGATTTATACTTGAAGA+AGG + chr1_4:29918271-29918290 None:intergenic 25.0%
!! ATTGTTTTCTTTGTTGAAGA+CGG - chr1_4:29918451-29918470 Msa0159450:five_prime_UTR 25.0%
! ACCTTCTTTATATTTAGTTG+TGG - chr1_4:29918652-29918671 Msa0159450:five_prime_UTR 25.0%
! ACCACAACTAAATATAAAGA+AGG + chr1_4:29918656-29918675 None:intergenic 25.0%
!! GCTAAATTTTACTTCCAAAA+GGG + chr1_4:29918842-29918861 None:intergenic 25.0%
!! AGCTAAATTTTACTTCCAAA+AGG + chr1_4:29918843-29918862 None:intergenic 25.0%
!!! GAAGTAAAATTTAGCTTTAG+AGG - chr1_4:29918847-29918866 Msa0159450:five_prime_UTR 25.0%
! ATAAACATGTCAATTGTTAG+GGG + chr1_4:29918890-29918909 None:intergenic 25.0%
! CATAAACATGTCAATTGTTA+GGG + chr1_4:29918891-29918910 None:intergenic 25.0%
! ACATAAACATGTCAATTGTT+AGG + chr1_4:29918892-29918911 None:intergenic 25.0%
! ACAATTGACATGTTTATGTT+CGG - chr1_4:29918893-29918912 Msa0159450:five_prime_UTR 25.0%
!! AGGAAAGATAAGCTTTTATT+TGG + chr1_4:29918987-29919006 None:intergenic 25.0%
! ATTAAGAGTAAAGGTGAAAA+TGG + chr1_4:29919032-29919051 None:intergenic 25.0%
! TAGGATGAAATTAAGAGTAA+AGG + chr1_4:29919041-29919060 None:intergenic 25.0%
!!! AAGTTGATGTCATTTTTACA+TGG - chr1_4:29919243-29919262 Msa0159450:five_prime_UTR 25.0%
!!! TTTACATGGTTTTATCTTTC+TGG - chr1_4:29919257-29919276 Msa0159450:five_prime_UTR 25.0%
! GTATTATATACTCTAAGCTT+AGG + chr1_4:29919303-29919322 None:intergenic 25.0%
! GAAATCTCACTAATAATAGT+TGG + chr1_4:29919374-29919393 None:intergenic 25.0%
!! TAGCATTTTCAATTTGAAGA+CGG + chr1_4:29919409-29919428 None:intergenic 25.0%
!! AAGTATTGATTGAGTGAGTT+AGG + chr1_4:29915596-29915615 None:intergenic 30.0%
!! AATAGCTTTATGAGGAACAT+AGG + chr1_4:29915675-29915694 None:intergenic 30.0%
TATTAGTGCTTGTTCCAAAA+TGG - chr1_4:29915761-29915780 Msa0159450:intron 30.0%
! ATTATCAACACAAGCCATTT+TGG + chr1_4:29915778-29915797 None:intergenic 30.0%
! AAAATGGCTTGTGTTGATAA+TGG - chr1_4:29915777-29915796 Msa0159450:intron 30.0%
!! AAATGGCTTGTGTTGATAAT+GGG - chr1_4:29915778-29915797 Msa0159450:intron 30.0%
ACTTGGAATTGTTTGATTAG+TGG - chr1_4:29915998-29916017 Msa0159450:intron 30.0%
CTTGGAATTGTTTGATTAGT+GGG - chr1_4:29915999-29916018 Msa0159450:intron 30.0%
GTTGAAGTTGTTTAGAGAAA+TGG - chr1_4:29916051-29916070 Msa0159450:intron 30.0%
! ACTGAGCTTGTTTGATTTAA+TGG - chr1_4:29916355-29916374 Msa0159450:intron 30.0%
! AGCTTGTTTGATTTAATGGT+TGG - chr1_4:29916359-29916378 Msa0159450:CDS 30.0%
! GCTTGTTTGATTTAATGGTT+GGG - chr1_4:29916360-29916379 Msa0159450:CDS 30.0%
AAGCAAATGATTGATGTGTT+TGG - chr1_4:29916533-29916552 Msa0159450:intron 30.0%
AGCAAATGATTGATGTGTTT+GGG - chr1_4:29916534-29916553 Msa0159450:intron 30.0%
AAGAACATGGCTAAATTTGA+TGG - chr1_4:29916641-29916660 Msa0159450:intron 30.0%
AGAACATGGCTAAATTTGAT+GGG - chr1_4:29916642-29916661 Msa0159450:intron 30.0%
CATAAATGATAAGCAGAAAC+TGG + chr1_4:29916796-29916815 None:intergenic 30.0%
!! GTTTTGACCAGTAAAAATCA+AGG + chr1_4:29917139-29917158 None:intergenic 30.0%
ATATAAACTAAGATCCTCCA+AGG + chr1_4:29917175-29917194 None:intergenic 30.0%
TGGAGGATCTTAGTTTATAT+AGG - chr1_4:29917175-29917194 Msa0159450:five_prime_UTR 30.0%
ACTAACAGAATATCGCAATT+TGG - chr1_4:29917233-29917252 Msa0159450:five_prime_UTR 30.0%
!!! AATATCGCAATTTGGTTTTG+AGG - chr1_4:29917241-29917260 Msa0159450:five_prime_UTR 30.0%
TGAATGAAATTTAGCATCAG+TGG - chr1_4:29917293-29917312 Msa0159450:five_prime_UTR 30.0%
!!! GCGTTTTTTCTCTAATTTTC+TGG - chr1_4:29917408-29917427 Msa0159450:five_prime_UTR 30.0%
TCTCCATTGAAAAATGAATG+CGG - chr1_4:29917530-29917549 Msa0159450:five_prime_UTR 30.0%
CTGACTACAAAATCAAGATT+GGG + chr1_4:29917556-29917575 None:intergenic 30.0%
TCTGACTACAAAATCAAGAT+TGG + chr1_4:29917557-29917576 None:intergenic 30.0%
AGAGAAAAACAATGGCAATT+CGG + chr1_4:29917665-29917684 None:intergenic 30.0%
TTTCAACCAGAGAAAAACAA+TGG + chr1_4:29917673-29917692 None:intergenic 30.0%
AGCTACACATTGTAAGAATT+CGG - chr1_4:29917823-29917842 Msa0159450:five_prime_UTR 30.0%
TCAAGAGAATATGTCTAATC+AGG + chr1_4:29917870-29917889 None:intergenic 30.0%
TTAGACATATTCTCTTGAGA+TGG - chr1_4:29917872-29917891 Msa0159450:five_prime_UTR 30.0%
! TTTGAAACAAAACATGAGCA+AGG + chr1_4:29917944-29917963 None:intergenic 30.0%
!! TATGATTTTGGTGAATTCGT+AGG - chr1_4:29918013-29918032 Msa0159450:five_prime_UTR 30.0%
!! ATGATTTTGGTGAATTCGTA+GGG - chr1_4:29918014-29918033 Msa0159450:five_prime_UTR 30.0%
AATCTTTGTATGCAGGATAT+GGG + chr1_4:29918176-29918195 None:intergenic 30.0%
! TTTCGGTCAGTTTGATTTAA+TGG - chr1_4:29918586-29918605 Msa0159450:five_prime_UTR 30.0%
!! GTTGTTCCCACATTATTTTA+AGG - chr1_4:29918753-29918772 Msa0159450:five_prime_UTR 30.0%
!! GTTTTCTTTTGGGAATGAAA+TGG - chr1_4:29918927-29918946 Msa0159450:five_prime_UTR 30.0%
AATGAAATGGTTTATCACCA+AGG - chr1_4:29918940-29918959 Msa0159450:five_prime_UTR 30.0%
!!! TGTTTCAGATATTTTTGGCA+AGG - chr1_4:29919098-29919117 Msa0159450:five_prime_UTR 30.0%
TTGTCACAATTTGAACATGT+AGG + chr1_4:29919350-29919369 None:intergenic 30.0%
GTCTTCAAATTGAAAATGCT+AGG - chr1_4:29919408-29919427 Msa0159450:five_prime_UTR 30.0%
! AATTGAAAATGCTAGGTTGA+AGG - chr1_4:29919415-29919434 Msa0159450:five_prime_UTR 30.0%
CTTATTTGATGAGATTGAGA+TGG - chr1_4:29919475-29919494 Msa0159450:five_prime_UTR 30.0%
!! AAGTATTGATTGAGTGAGTT+AGG + chr1_4:29915596-29915615 None:intergenic 30.0%
!! AATAGCTTTATGAGGAACAT+AGG + chr1_4:29915675-29915694 None:intergenic 30.0%
TATTAGTGCTTGTTCCAAAA+TGG - chr1_4:29915761-29915780 Msa0159450:intron 30.0%
! ATTATCAACACAAGCCATTT+TGG + chr1_4:29915778-29915797 None:intergenic 30.0%
! AAAATGGCTTGTGTTGATAA+TGG - chr1_4:29915777-29915796 Msa0159450:intron 30.0%
!! AAATGGCTTGTGTTGATAAT+GGG - chr1_4:29915778-29915797 Msa0159450:intron 30.0%
ACTTGGAATTGTTTGATTAG+TGG - chr1_4:29915998-29916017 Msa0159450:intron 30.0%
CTTGGAATTGTTTGATTAGT+GGG - chr1_4:29915999-29916018 Msa0159450:intron 30.0%
GTTGAAGTTGTTTAGAGAAA+TGG - chr1_4:29916051-29916070 Msa0159450:intron 30.0%
! ACTGAGCTTGTTTGATTTAA+TGG - chr1_4:29916355-29916374 Msa0159450:intron 30.0%
! AGCTTGTTTGATTTAATGGT+TGG - chr1_4:29916359-29916378 Msa0159450:CDS 30.0%
! GCTTGTTTGATTTAATGGTT+GGG - chr1_4:29916360-29916379 Msa0159450:CDS 30.0%
AAGCAAATGATTGATGTGTT+TGG - chr1_4:29916533-29916552 Msa0159450:intron 30.0%
AGCAAATGATTGATGTGTTT+GGG - chr1_4:29916534-29916553 Msa0159450:intron 30.0%
AAGAACATGGCTAAATTTGA+TGG - chr1_4:29916641-29916660 Msa0159450:intron 30.0%
AGAACATGGCTAAATTTGAT+GGG - chr1_4:29916642-29916661 Msa0159450:intron 30.0%
CATAAATGATAAGCAGAAAC+TGG + chr1_4:29916796-29916815 None:intergenic 30.0%
!! GTTTTGACCAGTAAAAATCA+AGG + chr1_4:29917139-29917158 None:intergenic 30.0%
ATATAAACTAAGATCCTCCA+AGG + chr1_4:29917175-29917194 None:intergenic 30.0%
TGGAGGATCTTAGTTTATAT+AGG - chr1_4:29917175-29917194 Msa0159450:five_prime_UTR 30.0%
ACTAACAGAATATCGCAATT+TGG - chr1_4:29917233-29917252 Msa0159450:five_prime_UTR 30.0%
!!! AATATCGCAATTTGGTTTTG+AGG - chr1_4:29917241-29917260 Msa0159450:five_prime_UTR 30.0%
TGAATGAAATTTAGCATCAG+TGG - chr1_4:29917293-29917312 Msa0159450:five_prime_UTR 30.0%
!!! GCGTTTTTTCTCTAATTTTC+TGG - chr1_4:29917408-29917427 Msa0159450:five_prime_UTR 30.0%
TCTCCATTGAAAAATGAATG+CGG - chr1_4:29917530-29917549 Msa0159450:five_prime_UTR 30.0%
CTGACTACAAAATCAAGATT+GGG + chr1_4:29917556-29917575 None:intergenic 30.0%
TCTGACTACAAAATCAAGAT+TGG + chr1_4:29917557-29917576 None:intergenic 30.0%
AGAGAAAAACAATGGCAATT+CGG + chr1_4:29917665-29917684 None:intergenic 30.0%
TTTCAACCAGAGAAAAACAA+TGG + chr1_4:29917673-29917692 None:intergenic 30.0%
AGCTACACATTGTAAGAATT+CGG - chr1_4:29917823-29917842 Msa0159450:five_prime_UTR 30.0%
TCAAGAGAATATGTCTAATC+AGG + chr1_4:29917870-29917889 None:intergenic 30.0%
TTAGACATATTCTCTTGAGA+TGG - chr1_4:29917872-29917891 Msa0159450:five_prime_UTR 30.0%
! TTTGAAACAAAACATGAGCA+AGG + chr1_4:29917944-29917963 None:intergenic 30.0%
!! TATGATTTTGGTGAATTCGT+AGG - chr1_4:29918013-29918032 Msa0159450:five_prime_UTR 30.0%
!! ATGATTTTGGTGAATTCGTA+GGG - chr1_4:29918014-29918033 Msa0159450:five_prime_UTR 30.0%
AATCTTTGTATGCAGGATAT+GGG + chr1_4:29918176-29918195 None:intergenic 30.0%
! TTTCGGTCAGTTTGATTTAA+TGG - chr1_4:29918586-29918605 Msa0159450:five_prime_UTR 30.0%
!! GTTGTTCCCACATTATTTTA+AGG - chr1_4:29918753-29918772 Msa0159450:five_prime_UTR 30.0%
!! GTTTTCTTTTGGGAATGAAA+TGG - chr1_4:29918927-29918946 Msa0159450:five_prime_UTR 30.0%
AATGAAATGGTTTATCACCA+AGG - chr1_4:29918940-29918959 Msa0159450:five_prime_UTR 30.0%
!!! TGTTTCAGATATTTTTGGCA+AGG - chr1_4:29919098-29919117 Msa0159450:five_prime_UTR 30.0%
TTGTCACAATTTGAACATGT+AGG + chr1_4:29919350-29919369 None:intergenic 30.0%
GTCTTCAAATTGAAAATGCT+AGG - chr1_4:29919408-29919427 Msa0159450:five_prime_UTR 30.0%
! AATTGAAAATGCTAGGTTGA+AGG - chr1_4:29919415-29919434 Msa0159450:five_prime_UTR 30.0%
CTTATTTGATGAGATTGAGA+TGG - chr1_4:29919475-29919494 Msa0159450:five_prime_UTR 30.0%
!!! TACTGGGTTTTGAGATTGAA+AGG + chr1_4:29915444-29915463 None:intergenic 35.0%
GAACTCAATGATTGACTGAT+GGG - chr1_4:29915906-29915925 Msa0159450:intron 35.0%
! ACTGATGGGTATGTTAAAGT+TGG - chr1_4:29915920-29915939 Msa0159450:intron 35.0%
!! TTTGATTAGTGGGTTTCCAA+AGG - chr1_4:29916009-29916028 Msa0159450:intron 35.0%
!! TTGATTAGTGGGTTTCCAAA+GGG - chr1_4:29916010-29916029 Msa0159450:intron 35.0%
! AAAGAAGGAAAATCGGTTCA+TGG - chr1_4:29916149-29916168 Msa0159450:intron 35.0%
! AAGAAGGAAAATCGGTTCAT+GGG - chr1_4:29916150-29916169 Msa0159450:intron 35.0%
! GTGTGATTAGGTTGTTTATG+AGG - chr1_4:29916174-29916193 Msa0159450:intron 35.0%
!! TTTTTGAGAGGATGAGTAGT+AGG - chr1_4:29916270-29916289 Msa0159450:intron 35.0%
! GTTTGATTTAATGGTTGGGA+TGG - chr1_4:29916364-29916383 Msa0159450:CDS 35.0%
ATGAAAGTTCAAGTGCAGAT+AGG - chr1_4:29916414-29916433 Msa0159450:CDS 35.0%
TGAAAGTTCAAGTGCAGATA+GGG - chr1_4:29916415-29916434 Msa0159450:CDS 35.0%
! AGTCGAATTTCGCTCATTTT+TGG - chr1_4:29916561-29916580 Msa0159450:intron 35.0%
GCAAATCTTCTTGCAAATGT+GGG - chr1_4:29916590-29916609 Msa0159450:intron 35.0%
CAAATCTTCTTGCAAATGTG+GGG - chr1_4:29916591-29916610 Msa0159450:intron 35.0%
CAAATTTAGCCATGTTCTTC+AGG + chr1_4:29916640-29916659 None:intergenic 35.0%
TTGTTATGGGCAAGTTTACT+CGG - chr1_4:29916683-29916702 Msa0159450:intron 35.0%
TTCAAGAGAGACGTTTACTT+AGG - chr1_4:29916716-29916735 Msa0159450:intron 35.0%
TCAAGAGAGACGTTTACTTA+GGG - chr1_4:29916717-29916736 Msa0159450:intron 35.0%
ATCCATGTCAACAAGAAGTT+TGG + chr1_4:29916753-29916772 None:intergenic 35.0%
GATAAGCAGAAACTGGTAAT+AGG + chr1_4:29916789-29916808 None:intergenic 35.0%
TCTGCTTATCATTTATGCAG+TGG - chr1_4:29916799-29916818 Msa0159450:intron 35.0%
CTGATGAAGGAAAGAAAGTT+AGG - chr1_4:29916857-29916876 Msa0159450:intron 35.0%
AGAAAGTTAGGCATAATACC+CGG - chr1_4:29916869-29916888 Msa0159450:intron 35.0%
GTTATCTTTATCTACCATCC+TGG + chr1_4:29917064-29917083 None:intergenic 35.0%
!! TTCTAAGGCTACTTGTCTAA+GGG + chr1_4:29917086-29917105 None:intergenic 35.0%
!! ATTCTAAGGCTACTTGTCTA+AGG + chr1_4:29917087-29917106 None:intergenic 35.0%
!! GAATTGCCATTGTTTTTCTC+TGG - chr1_4:29917664-29917683 Msa0159450:five_prime_UTR 35.0%
GATCTCAGACAAACAATCAA+AGG + chr1_4:29917775-29917794 None:intergenic 35.0%
GCTACACATTGTAAGAATTC+GGG - chr1_4:29917824-29917843 Msa0159450:five_prime_UTR 35.0%
CTACACATTGTAAGAATTCG+GGG - chr1_4:29917825-29917844 Msa0159450:five_prime_UTR 35.0%
TACACATTGTAAGAATTCGG+GGG - chr1_4:29917826-29917845 Msa0159450:five_prime_UTR 35.0%
AAAAAGAGCAACATCAAACC+TGG + chr1_4:29918099-29918118 None:intergenic 35.0%
CAATCTTTGTATGCAGGATA+TGG + chr1_4:29918177-29918196 None:intergenic 35.0%
TGAAGAAGGACAAATATGAG+AGG + chr1_4:29918257-29918276 None:intergenic 35.0%
AGATTTCAACACTGAATGGA+TGG + chr1_4:29918328-29918347 None:intergenic 35.0%
ATCGAGATTTCAACACTGAA+TGG + chr1_4:29918332-29918351 None:intergenic 35.0%
! AAAAGAGTACAATCCGACAA+AGG - chr1_4:29918533-29918552 Msa0159450:five_prime_UTR 35.0%
! AGGTATTGTTGGAGAAGAAA+GGG + chr1_4:29918636-29918655 None:intergenic 35.0%
!! AAGGTATTGTTGGAGAAGAA+AGG + chr1_4:29918637-29918656 None:intergenic 35.0%
CTATGACTAGAGGAACTATT+GGG - chr1_4:29918703-29918722 Msa0159450:five_prime_UTR 35.0%
! CTTTCATCAAATAGCCCTTT+TGG - chr1_4:29918825-29918844 Msa0159450:five_prime_UTR 35.0%
!!! GATATTTTTGGCAAGGATCA+TGG - chr1_4:29919105-29919124 Msa0159450:five_prime_UTR 35.0%
CAATCTCTCTTTAACTCAGA+AGG + chr1_4:29919144-29919163 None:intergenic 35.0%
CTGAGTTAAAGAGAGATTGT+CGG - chr1_4:29919145-29919164 Msa0159450:five_prime_UTR 35.0%
!! ACCTTTATGATGGATGCAAT+AGG - chr1_4:29919321-29919340 Msa0159450:five_prime_UTR 35.0%
TCCTATTGCATCCATCATAA+AGG + chr1_4:29919325-29919344 None:intergenic 35.0%
!!! TACTGGGTTTTGAGATTGAA+AGG + chr1_4:29915444-29915463 None:intergenic 35.0%
GAACTCAATGATTGACTGAT+GGG - chr1_4:29915906-29915925 Msa0159450:intron 35.0%
! ACTGATGGGTATGTTAAAGT+TGG - chr1_4:29915920-29915939 Msa0159450:intron 35.0%
!! TTTGATTAGTGGGTTTCCAA+AGG - chr1_4:29916009-29916028 Msa0159450:intron 35.0%
!! TTGATTAGTGGGTTTCCAAA+GGG - chr1_4:29916010-29916029 Msa0159450:intron 35.0%
! AAAGAAGGAAAATCGGTTCA+TGG - chr1_4:29916149-29916168 Msa0159450:intron 35.0%
! AAGAAGGAAAATCGGTTCAT+GGG - chr1_4:29916150-29916169 Msa0159450:intron 35.0%
! GTGTGATTAGGTTGTTTATG+AGG - chr1_4:29916174-29916193 Msa0159450:intron 35.0%
!! TTTTTGAGAGGATGAGTAGT+AGG - chr1_4:29916270-29916289 Msa0159450:intron 35.0%
! GTTTGATTTAATGGTTGGGA+TGG - chr1_4:29916364-29916383 Msa0159450:CDS 35.0%
ATGAAAGTTCAAGTGCAGAT+AGG - chr1_4:29916414-29916433 Msa0159450:CDS 35.0%
TGAAAGTTCAAGTGCAGATA+GGG - chr1_4:29916415-29916434 Msa0159450:CDS 35.0%
! AGTCGAATTTCGCTCATTTT+TGG - chr1_4:29916561-29916580 Msa0159450:intron 35.0%
GCAAATCTTCTTGCAAATGT+GGG - chr1_4:29916590-29916609 Msa0159450:intron 35.0%
CAAATCTTCTTGCAAATGTG+GGG - chr1_4:29916591-29916610 Msa0159450:intron 35.0%
CAAATTTAGCCATGTTCTTC+AGG + chr1_4:29916640-29916659 None:intergenic 35.0%
TTGTTATGGGCAAGTTTACT+CGG - chr1_4:29916683-29916702 Msa0159450:intron 35.0%
TTCAAGAGAGACGTTTACTT+AGG - chr1_4:29916716-29916735 Msa0159450:intron 35.0%
TCAAGAGAGACGTTTACTTA+GGG - chr1_4:29916717-29916736 Msa0159450:intron 35.0%
ATCCATGTCAACAAGAAGTT+TGG + chr1_4:29916753-29916772 None:intergenic 35.0%
GATAAGCAGAAACTGGTAAT+AGG + chr1_4:29916789-29916808 None:intergenic 35.0%
TCTGCTTATCATTTATGCAG+TGG - chr1_4:29916799-29916818 Msa0159450:intron 35.0%
CTGATGAAGGAAAGAAAGTT+AGG - chr1_4:29916857-29916876 Msa0159450:intron 35.0%
AGAAAGTTAGGCATAATACC+CGG - chr1_4:29916869-29916888 Msa0159450:intron 35.0%
GTTATCTTTATCTACCATCC+TGG + chr1_4:29917064-29917083 None:intergenic 35.0%
!! TTCTAAGGCTACTTGTCTAA+GGG + chr1_4:29917086-29917105 None:intergenic 35.0%
!! ATTCTAAGGCTACTTGTCTA+AGG + chr1_4:29917087-29917106 None:intergenic 35.0%
!! GAATTGCCATTGTTTTTCTC+TGG - chr1_4:29917664-29917683 Msa0159450:five_prime_UTR 35.0%
GATCTCAGACAAACAATCAA+AGG + chr1_4:29917775-29917794 None:intergenic 35.0%
GCTACACATTGTAAGAATTC+GGG - chr1_4:29917824-29917843 Msa0159450:five_prime_UTR 35.0%
CTACACATTGTAAGAATTCG+GGG - chr1_4:29917825-29917844 Msa0159450:five_prime_UTR 35.0%
TACACATTGTAAGAATTCGG+GGG - chr1_4:29917826-29917845 Msa0159450:five_prime_UTR 35.0%
AAAAAGAGCAACATCAAACC+TGG + chr1_4:29918099-29918118 None:intergenic 35.0%
CAATCTTTGTATGCAGGATA+TGG + chr1_4:29918177-29918196 None:intergenic 35.0%
TGAAGAAGGACAAATATGAG+AGG + chr1_4:29918257-29918276 None:intergenic 35.0%
AGATTTCAACACTGAATGGA+TGG + chr1_4:29918328-29918347 None:intergenic 35.0%
ATCGAGATTTCAACACTGAA+TGG + chr1_4:29918332-29918351 None:intergenic 35.0%
! AAAAGAGTACAATCCGACAA+AGG - chr1_4:29918533-29918552 Msa0159450:five_prime_UTR 35.0%
! AGGTATTGTTGGAGAAGAAA+GGG + chr1_4:29918636-29918655 None:intergenic 35.0%
!! AAGGTATTGTTGGAGAAGAA+AGG + chr1_4:29918637-29918656 None:intergenic 35.0%
CTATGACTAGAGGAACTATT+GGG - chr1_4:29918703-29918722 Msa0159450:five_prime_UTR 35.0%
! CTTTCATCAAATAGCCCTTT+TGG - chr1_4:29918825-29918844 Msa0159450:five_prime_UTR 35.0%
!!! GATATTTTTGGCAAGGATCA+TGG - chr1_4:29919105-29919124 Msa0159450:five_prime_UTR 35.0%
CAATCTCTCTTTAACTCAGA+AGG + chr1_4:29919144-29919163 None:intergenic 35.0%
CTGAGTTAAAGAGAGATTGT+CGG - chr1_4:29919145-29919164 Msa0159450:five_prime_UTR 35.0%
!! ACCTTTATGATGGATGCAAT+AGG - chr1_4:29919321-29919340 Msa0159450:five_prime_UTR 35.0%
TCCTATTGCATCCATCATAA+AGG + chr1_4:29919325-29919344 None:intergenic 35.0%
!!! TGGGTTTTGAGATTGAAAGG+TGG + chr1_4:29915441-29915460 None:intergenic 40.0%
TTTGGATGCTGAGCTTTACT+GGG + chr1_4:29915460-29915479 None:intergenic 40.0%
ATTTGGATGCTGAGCTTTAC+TGG + chr1_4:29915461-29915480 None:intergenic 40.0%
AAGCTCAGCATCCAAATGAA+TGG - chr1_4:29915464-29915483 Msa0159450:CDS 40.0%
GTAGATTCTGGCCATTCATT+TGG + chr1_4:29915478-29915497 None:intergenic 40.0%
ATGAAGAGGAAGAAGAGATG+GGG + chr1_4:29915545-29915564 None:intergenic 40.0%
GATGAAGAGGAAGAAGAGAT+GGG + chr1_4:29915546-29915565 None:intergenic 40.0%
AGATGAAGAGGAAGAAGAGA+TGG + chr1_4:29915547-29915566 None:intergenic 40.0%
AATTGTGAAGGTGAAGGTGA+AGG + chr1_4:29915573-29915592 None:intergenic 40.0%
GTTAGGAATTGTGAAGGTGA+AGG + chr1_4:29915579-29915598 None:intergenic 40.0%
GAGTGAGTTAGGAATTGTGA+AGG + chr1_4:29915585-29915604 None:intergenic 40.0%
AATTTGAAGAAGGTGGTGAG+TGG + chr1_4:29915638-29915657 None:intergenic 40.0%
GAAGGGCTTGAATTTGAAGA+AGG + chr1_4:29915648-29915667 None:intergenic 40.0%
TGAGGAACATAGGATGAGAA+GGG + chr1_4:29915665-29915684 None:intergenic 40.0%
ATGAGGAACATAGGATGAGA+AGG + chr1_4:29915666-29915685 None:intergenic 40.0%
!!! TGGGGTTGATTTTGTTTTGC+CGG - chr1_4:29915815-29915834 Msa0159450:intron 40.0%
! AATTCCTTGGTTGGTTGCTA+GGG - chr1_4:29915843-29915862 Msa0159450:intron 40.0%
TAGGGTGATGTTTGATGGAA+TGG - chr1_4:29915861-29915880 Msa0159450:intron 40.0%
TGTTTGATGGAATGGTGAGT+CGG - chr1_4:29915869-29915888 Msa0159450:intron 40.0%
GGAACTCAATGATTGACTGA+TGG - chr1_4:29915905-29915924 Msa0159450:intron 40.0%
TGTTTGATGTAATGCCTGAG+AGG - chr1_4:29915966-29915985 Msa0159450:intron 40.0%
TGTAATGCCTGAGAGGAATT+TGG - chr1_4:29915973-29915992 Msa0159450:intron 40.0%
CAAGTAACCAAATTCCTCTC+AGG + chr1_4:29915983-29916002 None:intergenic 40.0%
CTGAGAGGAATTTGGTTACT+TGG - chr1_4:29915981-29916000 Msa0159450:intron 40.0%
AACAACTTCAACGCATAACC+AGG + chr1_4:29916043-29916062 None:intergenic 40.0%
AGTTGTTTAGAGAAATGGGC+AGG - chr1_4:29916056-29916075 Msa0159450:intron 40.0%
TGAGAATTAGAGGGAATGCT+AGG - chr1_4:29916080-29916099 Msa0159450:intron 40.0%
! GACAATGGTTTGTGCAGTTA+CGG - chr1_4:29916102-29916121 Msa0159450:intron 40.0%
TTGTAAATGCAGGAGAGTTG+AGG - chr1_4:29916235-29916254 Msa0159450:intron 40.0%
!! CGGCTAGTAAAGTTTTTGAG+AGG - chr1_4:29916258-29916277 Msa0159450:intron 40.0%
GAGGATGAGTAGTAGGAATT+TGG - chr1_4:29916277-29916296 Msa0159450:intron 40.0%
! GTAGTAGGAATTTGGTTTCG+TGG - chr1_4:29916285-29916304 Msa0159450:intron 40.0%
! TTTGGTTTCGTGGAATGCAA+TGG - chr1_4:29916295-29916314 Msa0159450:intron 40.0%
! TTCGTGGAATGCAATGGTTT+TGG - chr1_4:29916301-29916320 Msa0159450:intron 40.0%
! TCGTGGAATGCAATGGTTTT+GGG - chr1_4:29916302-29916321 Msa0159450:intron 40.0%
GAAAGTTCAAGTGCAGATAG+GGG - chr1_4:29916416-29916435 Msa0159450:CDS 40.0%
!!! TTTCGCTCATTTTTGGTGCA+TGG - chr1_4:29916568-29916587 Msa0159450:intron 40.0%
GGCAAATCTTCTTGCAAATG+TGG - chr1_4:29916589-29916608 Msa0159450:intron 40.0%
AGAAGAATGCCTGAAGAACA+TGG - chr1_4:29916628-29916647 Msa0159450:intron 40.0%
TCTCACCTGAGTCATTGTTA+TGG - chr1_4:29916669-29916688 Msa0159450:intron 40.0%
CTCACCTGAGTCATTGTTAT+GGG - chr1_4:29916670-29916689 Msa0159450:intron 40.0%
CAAGAGAGACGTTTACTTAG+GGG - chr1_4:29916718-29916737 Msa0159450:intron 40.0%
TGCCAAACTTCTTGTTGACA+TGG - chr1_4:29916748-29916767 Msa0159450:intron 40.0%
TGGTAATAGGCTAGGTTCTT+AGG + chr1_4:29916776-29916795 None:intergenic 40.0%
! AGGAGTGCAAAAACTGATGA+AGG - chr1_4:29916844-29916863 Msa0159450:intron 40.0%
!! TGCTGATTCTGGACAATCAT+CGG - chr1_4:29917015-29917034 Msa0159450:intron 40.0%
AAACAACCACTGAACAACCT+TGG - chr1_4:29917155-29917174 Msa0159450:five_prime_UTR 40.0%
TTGATTGAAATTCCACCGTG+CGG - chr1_4:29917367-29917386 Msa0159450:five_prime_UTR 40.0%
ACACATTGTAAGAATTCGGG+GGG - chr1_4:29917827-29917846 Msa0159450:five_prime_UTR 40.0%
TTGTATGCAGGATATGGGTT+GGG + chr1_4:29918171-29918190 None:intergenic 40.0%
TTTGTATGCAGGATATGGGT+TGG + chr1_4:29918172-29918191 None:intergenic 40.0%
!! ACAGAATAGGGTGTTGAACT+TGG + chr1_4:29918221-29918240 None:intergenic 40.0%
AGAAGGACAAATATGAGAGG+TGG + chr1_4:29918254-29918273 None:intergenic 40.0%
ACGGAAAACTCATTTGACGA+AGG - chr1_4:29918470-29918489 Msa0159450:five_prime_UTR 40.0%
! AAAACACCGGTGGAGTTTTT+CGG - chr1_4:29918569-29918588 Msa0159450:five_prime_UTR 40.0%
GGTATTGTTGGAGAAGAAAG+GGG + chr1_4:29918635-29918654 None:intergenic 40.0%
AATGCTTCTGCTATGACTAG+AGG - chr1_4:29918693-29918712 Msa0159450:five_prime_UTR 40.0%
GCTATGACTAGAGGAACTAT+TGG - chr1_4:29918702-29918721 Msa0159450:five_prime_UTR 40.0%
AATGGTTTATCACCAAGGCA+AGG - chr1_4:29918945-29918964 Msa0159450:five_prime_UTR 40.0%
TGATGAGATTGAGATGGTGA+AGG - chr1_4:29919481-29919500 Msa0159450:five_prime_UTR 40.0%
!!! TGGGTTTTGAGATTGAAAGG+TGG + chr1_4:29915441-29915460 None:intergenic 40.0%
TTTGGATGCTGAGCTTTACT+GGG + chr1_4:29915460-29915479 None:intergenic 40.0%
ATTTGGATGCTGAGCTTTAC+TGG + chr1_4:29915461-29915480 None:intergenic 40.0%
AAGCTCAGCATCCAAATGAA+TGG - chr1_4:29915464-29915483 Msa0159450:CDS 40.0%
GTAGATTCTGGCCATTCATT+TGG + chr1_4:29915478-29915497 None:intergenic 40.0%
ATGAAGAGGAAGAAGAGATG+GGG + chr1_4:29915545-29915564 None:intergenic 40.0%
GATGAAGAGGAAGAAGAGAT+GGG + chr1_4:29915546-29915565 None:intergenic 40.0%
AGATGAAGAGGAAGAAGAGA+TGG + chr1_4:29915547-29915566 None:intergenic 40.0%
AATTGTGAAGGTGAAGGTGA+AGG + chr1_4:29915573-29915592 None:intergenic 40.0%
GTTAGGAATTGTGAAGGTGA+AGG + chr1_4:29915579-29915598 None:intergenic 40.0%
GAGTGAGTTAGGAATTGTGA+AGG + chr1_4:29915585-29915604 None:intergenic 40.0%
AATTTGAAGAAGGTGGTGAG+TGG + chr1_4:29915638-29915657 None:intergenic 40.0%
GAAGGGCTTGAATTTGAAGA+AGG + chr1_4:29915648-29915667 None:intergenic 40.0%
TGAGGAACATAGGATGAGAA+GGG + chr1_4:29915665-29915684 None:intergenic 40.0%
ATGAGGAACATAGGATGAGA+AGG + chr1_4:29915666-29915685 None:intergenic 40.0%
!!! TGGGGTTGATTTTGTTTTGC+CGG - chr1_4:29915815-29915834 Msa0159450:intron 40.0%
! AATTCCTTGGTTGGTTGCTA+GGG - chr1_4:29915843-29915862 Msa0159450:intron 40.0%
TAGGGTGATGTTTGATGGAA+TGG - chr1_4:29915861-29915880 Msa0159450:intron 40.0%
TGTTTGATGGAATGGTGAGT+CGG - chr1_4:29915869-29915888 Msa0159450:intron 40.0%
GGAACTCAATGATTGACTGA+TGG - chr1_4:29915905-29915924 Msa0159450:intron 40.0%
TGTTTGATGTAATGCCTGAG+AGG - chr1_4:29915966-29915985 Msa0159450:intron 40.0%
TGTAATGCCTGAGAGGAATT+TGG - chr1_4:29915973-29915992 Msa0159450:intron 40.0%
CAAGTAACCAAATTCCTCTC+AGG + chr1_4:29915983-29916002 None:intergenic 40.0%
CTGAGAGGAATTTGGTTACT+TGG - chr1_4:29915981-29916000 Msa0159450:intron 40.0%
AACAACTTCAACGCATAACC+AGG + chr1_4:29916043-29916062 None:intergenic 40.0%
AGTTGTTTAGAGAAATGGGC+AGG - chr1_4:29916056-29916075 Msa0159450:intron 40.0%
TGAGAATTAGAGGGAATGCT+AGG - chr1_4:29916080-29916099 Msa0159450:intron 40.0%
! GACAATGGTTTGTGCAGTTA+CGG - chr1_4:29916102-29916121 Msa0159450:intron 40.0%
TTGTAAATGCAGGAGAGTTG+AGG - chr1_4:29916235-29916254 Msa0159450:intron 40.0%
!! CGGCTAGTAAAGTTTTTGAG+AGG - chr1_4:29916258-29916277 Msa0159450:intron 40.0%
GAGGATGAGTAGTAGGAATT+TGG - chr1_4:29916277-29916296 Msa0159450:intron 40.0%
! GTAGTAGGAATTTGGTTTCG+TGG - chr1_4:29916285-29916304 Msa0159450:intron 40.0%
! TTTGGTTTCGTGGAATGCAA+TGG - chr1_4:29916295-29916314 Msa0159450:intron 40.0%
! TTCGTGGAATGCAATGGTTT+TGG - chr1_4:29916301-29916320 Msa0159450:intron 40.0%
! TCGTGGAATGCAATGGTTTT+GGG - chr1_4:29916302-29916321 Msa0159450:intron 40.0%
GAAAGTTCAAGTGCAGATAG+GGG - chr1_4:29916416-29916435 Msa0159450:CDS 40.0%
!!! TTTCGCTCATTTTTGGTGCA+TGG - chr1_4:29916568-29916587 Msa0159450:intron 40.0%
GGCAAATCTTCTTGCAAATG+TGG - chr1_4:29916589-29916608 Msa0159450:intron 40.0%
AGAAGAATGCCTGAAGAACA+TGG - chr1_4:29916628-29916647 Msa0159450:intron 40.0%
TCTCACCTGAGTCATTGTTA+TGG - chr1_4:29916669-29916688 Msa0159450:intron 40.0%
CTCACCTGAGTCATTGTTAT+GGG - chr1_4:29916670-29916689 Msa0159450:intron 40.0%
CAAGAGAGACGTTTACTTAG+GGG - chr1_4:29916718-29916737 Msa0159450:intron 40.0%
TGCCAAACTTCTTGTTGACA+TGG - chr1_4:29916748-29916767 Msa0159450:intron 40.0%
TGGTAATAGGCTAGGTTCTT+AGG + chr1_4:29916776-29916795 None:intergenic 40.0%
! AGGAGTGCAAAAACTGATGA+AGG - chr1_4:29916844-29916863 Msa0159450:intron 40.0%
!! TGCTGATTCTGGACAATCAT+CGG - chr1_4:29917015-29917034 Msa0159450:intron 40.0%
AAACAACCACTGAACAACCT+TGG - chr1_4:29917155-29917174 Msa0159450:five_prime_UTR 40.0%
TTGATTGAAATTCCACCGTG+CGG - chr1_4:29917367-29917386 Msa0159450:five_prime_UTR 40.0%
ACACATTGTAAGAATTCGGG+GGG - chr1_4:29917827-29917846 Msa0159450:five_prime_UTR 40.0%
TTGTATGCAGGATATGGGTT+GGG + chr1_4:29918171-29918190 None:intergenic 40.0%
TTTGTATGCAGGATATGGGT+TGG + chr1_4:29918172-29918191 None:intergenic 40.0%
!! ACAGAATAGGGTGTTGAACT+TGG + chr1_4:29918221-29918240 None:intergenic 40.0%
AGAAGGACAAATATGAGAGG+TGG + chr1_4:29918254-29918273 None:intergenic 40.0%
ACGGAAAACTCATTTGACGA+AGG - chr1_4:29918470-29918489 Msa0159450:five_prime_UTR 40.0%
! AAAACACCGGTGGAGTTTTT+CGG - chr1_4:29918569-29918588 Msa0159450:five_prime_UTR 40.0%
GGTATTGTTGGAGAAGAAAG+GGG + chr1_4:29918635-29918654 None:intergenic 40.0%
AATGCTTCTGCTATGACTAG+AGG - chr1_4:29918693-29918712 Msa0159450:five_prime_UTR 40.0%
GCTATGACTAGAGGAACTAT+TGG - chr1_4:29918702-29918721 Msa0159450:five_prime_UTR 40.0%
AATGGTTTATCACCAAGGCA+AGG - chr1_4:29918945-29918964 Msa0159450:five_prime_UTR 40.0%
TGATGAGATTGAGATGGTGA+AGG - chr1_4:29919481-29919500 Msa0159450:five_prime_UTR 40.0%
AAAGTGGCGAGAGTAGATTC+TGG + chr1_4:29915490-29915509 None:intergenic 45.0%
AGGTGAAGGTGAAGATGAAG+AGG + chr1_4:29915559-29915578 None:intergenic 45.0%
! TGAGTGGTTTGGCAATGAGA+AGG + chr1_4:29915622-29915641 None:intergenic 45.0%
GGGCTTGAATTTGAAGAAGG+TGG + chr1_4:29915645-29915664 None:intergenic 45.0%
AATGGGCAGGCTGTGAAAAA+TGG - chr1_4:29915795-29915814 Msa0159450:intron 45.0%
ATGGGCAGGCTGTGAAAAAT+GGG - chr1_4:29915796-29915815 Msa0159450:intron 45.0%
!!! GGTTGATTTTGTTTTGCCGG+TGG - chr1_4:29915818-29915837 Msa0159450:intron 45.0%
! GAATTCCTTGGTTGGTTGCT+AGG - chr1_4:29915842-29915861 Msa0159450:intron 45.0%
GTTGCTAGGGTGATGTTTGA+TGG - chr1_4:29915856-29915875 Msa0159450:intron 45.0%
GTTTGATGGAATGGTGAGTC+GGG - chr1_4:29915870-29915889 Msa0159450:intron 45.0%
!! TTAGTGGGTTTCCAAAGGGT+AGG - chr1_4:29916014-29916033 Msa0159450:intron 45.0%
TTTCCAAAGGGTAGGAATCC+TGG - chr1_4:29916022-29916041 Msa0159450:intron 45.0%
TAACCAGGATTCCTACCCTT+TGG + chr1_4:29916028-29916047 None:intergenic 45.0%
TAGAGGGAATGCTAGGACAA+TGG - chr1_4:29916087-29916106 Msa0159450:intron 45.0%
GGTCGGGTAGACTTAAAAGA+AGG - chr1_4:29916134-29916153 Msa0159450:intron 45.0%
TAAATGCAGGAGAGTTGAGG+CGG - chr1_4:29916238-29916257 Msa0159450:intron 45.0%
!! CGTGGAATGCAATGGTTTTG+GGG - chr1_4:29916303-29916322 Msa0159450:intron 45.0%
!!! TTTTGGGGCATTGCATCCAT+GGG - chr1_4:29916318-29916337 Msa0159450:intron 45.0%
GAGTGTGAAAGGTGAAGTTG+AGG - chr1_4:29916388-29916407 Msa0159450:CDS 45.0%
TTCAAGTGCAGATAGGGGTT+TGG - chr1_4:29916421-29916440 Msa0159450:CDS 45.0%
CATTCTTTGTGCGTGTGCTT+GGG - chr1_4:29916478-29916497 Msa0159450:intron 45.0%
AAATGTGGGGCTTATTGACG+AGG - chr1_4:29916604-29916623 Msa0159450:intron 45.0%
CTTGCCCATAACAATGACTC+AGG + chr1_4:29916677-29916696 None:intergenic 45.0%
GCAGAAACTGGTAATAGGCT+AGG + chr1_4:29916784-29916803 None:intergenic 45.0%
TTTATGCAGTGGCTGCTCAA+TGG - chr1_4:29916810-29916829 Msa0159450:intron 45.0%
TTATGCAGTGGCTGCTCAAT+GGG - chr1_4:29916811-29916830 Msa0159450:intron 45.0%
GCTCAATGGGAGAATGTTTC+AGG - chr1_4:29916824-29916843 Msa0159450:intron 45.0%
AATACCCGGAAGCAATCTTG+TGG - chr1_4:29916883-29916902 Msa0159450:intron 45.0%
AAGTCCACAAGATTGCTTCC+GGG + chr1_4:29916890-29916909 None:intergenic 45.0%
CAAGTCCACAAGATTGCTTC+CGG + chr1_4:29916891-29916910 None:intergenic 45.0%
GATTGTCCAGAATCAGCACA+AGG + chr1_4:29917013-29917032 None:intergenic 45.0%
TGATTCTGGACAATCATCGG+TGG - chr1_4:29917018-29917037 Msa0159450:intron 45.0%
GATTCTGGACAATCATCGGT+GGG - chr1_4:29917019-29917038 Msa0159450:intron 45.0%
!! CTGGCTTTTGCAATTCTCTC+TGG + chr1_4:29917045-29917064 None:intergenic 45.0%
CAGAGAGAATTGCAAAAGCC+AGG - chr1_4:29917043-29917062 Msa0159450:five_prime_UTR 45.0%
GAGAATTGCAAAAGCCAGGA+TGG - chr1_4:29917047-29917066 Msa0159450:five_prime_UTR 45.0%
AGGTAGCTGCAAGTTTCTCA+TGG - chr1_4:29917195-29917214 Msa0159450:five_prime_UTR 45.0%
GGTAGCTGCAAGTTTCTCAT+GGG - chr1_4:29917196-29917215 Msa0159450:five_prime_UTR 45.0%
GTAGCTGCAAGTTTCTCATG+GGG - chr1_4:29917197-29917216 Msa0159450:five_prime_UTR 45.0%
AAAACGCCATGCACCAGAAT+CGG + chr1_4:29917395-29917414 None:intergenic 45.0%
!! GGGCCGCATTCATTTTTCAA+TGG + chr1_4:29917536-29917555 None:intergenic 45.0%
! GATTTTGTGCCAATGCTGTC+AGG - chr1_4:29917595-29917614 Msa0159450:five_prime_UTR 45.0%
TCAACGTTTCCTGACAGCAT+TGG + chr1_4:29917607-29917626 None:intergenic 45.0%
! TGTTTGTCTGAGATCGTTCC+TGG - chr1_4:29917780-29917799 Msa0159450:five_prime_UTR 45.0%
! GTTTGTCTGAGATCGTTCCT+GGG - chr1_4:29917781-29917800 Msa0159450:five_prime_UTR 45.0%
TCAACATTAGCATCACCACC+AGG - chr1_4:29918078-29918097 Msa0159450:five_prime_UTR 45.0%
AAGAGCAACATCAAACCTGG+TGG + chr1_4:29918096-29918115 None:intergenic 45.0%
!! CAGGATATGGGTTGGGTTTA+TGG + chr1_4:29918164-29918183 None:intergenic 45.0%
TCCGACAAAGGAACAAGAGA+CGG - chr1_4:29918545-29918564 Msa0159450:five_prime_UTR 45.0%
AACAAGAGACGGGAAAACAC+CGG - chr1_4:29918556-29918575 Msa0159450:five_prime_UTR 45.0%
AACTGACCGAAAAACTCCAC+CGG + chr1_4:29918578-29918597 None:intergenic 45.0%
GGAACTATTGGGTTTGTGCA+TGG - chr1_4:29918714-29918733 Msa0159450:five_prime_UTR 45.0%
TTTATCACCAAGGCAAGGAC+TGG - chr1_4:29918950-29918969 Msa0159450:five_prime_UTR 45.0%
TGGTGAAGGCAAGAAACAGA+AGG - chr1_4:29919495-29919514 Msa0159450:five_prime_UTR 45.0%
GGTGAAGGCAAGAAACAGAA+GGG - chr1_4:29919496-29919515 Msa0159450:five_prime_UTR 45.0%
AAAGTGGCGAGAGTAGATTC+TGG + chr1_4:29915490-29915509 None:intergenic 45.0%
AGGTGAAGGTGAAGATGAAG+AGG + chr1_4:29915559-29915578 None:intergenic 45.0%
! TGAGTGGTTTGGCAATGAGA+AGG + chr1_4:29915622-29915641 None:intergenic 45.0%
GGGCTTGAATTTGAAGAAGG+TGG + chr1_4:29915645-29915664 None:intergenic 45.0%
AATGGGCAGGCTGTGAAAAA+TGG - chr1_4:29915795-29915814 Msa0159450:intron 45.0%
ATGGGCAGGCTGTGAAAAAT+GGG - chr1_4:29915796-29915815 Msa0159450:intron 45.0%
!!! GGTTGATTTTGTTTTGCCGG+TGG - chr1_4:29915818-29915837 Msa0159450:intron 45.0%
! GAATTCCTTGGTTGGTTGCT+AGG - chr1_4:29915842-29915861 Msa0159450:intron 45.0%
GTTGCTAGGGTGATGTTTGA+TGG - chr1_4:29915856-29915875 Msa0159450:intron 45.0%
GTTTGATGGAATGGTGAGTC+GGG - chr1_4:29915870-29915889 Msa0159450:intron 45.0%
!! TTAGTGGGTTTCCAAAGGGT+AGG - chr1_4:29916014-29916033 Msa0159450:intron 45.0%
TTTCCAAAGGGTAGGAATCC+TGG - chr1_4:29916022-29916041 Msa0159450:intron 45.0%
TAACCAGGATTCCTACCCTT+TGG + chr1_4:29916028-29916047 None:intergenic 45.0%
TAGAGGGAATGCTAGGACAA+TGG - chr1_4:29916087-29916106 Msa0159450:intron 45.0%
GGTCGGGTAGACTTAAAAGA+AGG - chr1_4:29916134-29916153 Msa0159450:intron 45.0%
TAAATGCAGGAGAGTTGAGG+CGG - chr1_4:29916238-29916257 Msa0159450:intron 45.0%
!! CGTGGAATGCAATGGTTTTG+GGG - chr1_4:29916303-29916322 Msa0159450:intron 45.0%
!!! TTTTGGGGCATTGCATCCAT+GGG - chr1_4:29916318-29916337 Msa0159450:intron 45.0%
GAGTGTGAAAGGTGAAGTTG+AGG - chr1_4:29916388-29916407 Msa0159450:CDS 45.0%
TTCAAGTGCAGATAGGGGTT+TGG - chr1_4:29916421-29916440 Msa0159450:CDS 45.0%
CATTCTTTGTGCGTGTGCTT+GGG - chr1_4:29916478-29916497 Msa0159450:intron 45.0%
AAATGTGGGGCTTATTGACG+AGG - chr1_4:29916604-29916623 Msa0159450:intron 45.0%
CTTGCCCATAACAATGACTC+AGG + chr1_4:29916677-29916696 None:intergenic 45.0%
GCAGAAACTGGTAATAGGCT+AGG + chr1_4:29916784-29916803 None:intergenic 45.0%
TTTATGCAGTGGCTGCTCAA+TGG - chr1_4:29916810-29916829 Msa0159450:intron 45.0%
TTATGCAGTGGCTGCTCAAT+GGG - chr1_4:29916811-29916830 Msa0159450:intron 45.0%
GCTCAATGGGAGAATGTTTC+AGG - chr1_4:29916824-29916843 Msa0159450:intron 45.0%
AATACCCGGAAGCAATCTTG+TGG - chr1_4:29916883-29916902 Msa0159450:intron 45.0%
AAGTCCACAAGATTGCTTCC+GGG + chr1_4:29916890-29916909 None:intergenic 45.0%
CAAGTCCACAAGATTGCTTC+CGG + chr1_4:29916891-29916910 None:intergenic 45.0%
GATTGTCCAGAATCAGCACA+AGG + chr1_4:29917013-29917032 None:intergenic 45.0%
TGATTCTGGACAATCATCGG+TGG - chr1_4:29917018-29917037 Msa0159450:intron 45.0%
GATTCTGGACAATCATCGGT+GGG - chr1_4:29917019-29917038 Msa0159450:intron 45.0%
!! CTGGCTTTTGCAATTCTCTC+TGG + chr1_4:29917045-29917064 None:intergenic 45.0%
CAGAGAGAATTGCAAAAGCC+AGG - chr1_4:29917043-29917062 Msa0159450:five_prime_UTR 45.0%
GAGAATTGCAAAAGCCAGGA+TGG - chr1_4:29917047-29917066 Msa0159450:five_prime_UTR 45.0%
AGGTAGCTGCAAGTTTCTCA+TGG - chr1_4:29917195-29917214 Msa0159450:five_prime_UTR 45.0%
GGTAGCTGCAAGTTTCTCAT+GGG - chr1_4:29917196-29917215 Msa0159450:five_prime_UTR 45.0%
GTAGCTGCAAGTTTCTCATG+GGG - chr1_4:29917197-29917216 Msa0159450:five_prime_UTR 45.0%
AAAACGCCATGCACCAGAAT+CGG + chr1_4:29917395-29917414 None:intergenic 45.0%
!! GGGCCGCATTCATTTTTCAA+TGG + chr1_4:29917536-29917555 None:intergenic 45.0%
! GATTTTGTGCCAATGCTGTC+AGG - chr1_4:29917595-29917614 Msa0159450:five_prime_UTR 45.0%
TCAACGTTTCCTGACAGCAT+TGG + chr1_4:29917607-29917626 None:intergenic 45.0%
! TGTTTGTCTGAGATCGTTCC+TGG - chr1_4:29917780-29917799 Msa0159450:five_prime_UTR 45.0%
! GTTTGTCTGAGATCGTTCCT+GGG - chr1_4:29917781-29917800 Msa0159450:five_prime_UTR 45.0%
TCAACATTAGCATCACCACC+AGG - chr1_4:29918078-29918097 Msa0159450:five_prime_UTR 45.0%
AAGAGCAACATCAAACCTGG+TGG + chr1_4:29918096-29918115 None:intergenic 45.0%
!! CAGGATATGGGTTGGGTTTA+TGG + chr1_4:29918164-29918183 None:intergenic 45.0%
TCCGACAAAGGAACAAGAGA+CGG - chr1_4:29918545-29918564 Msa0159450:five_prime_UTR 45.0%
AACAAGAGACGGGAAAACAC+CGG - chr1_4:29918556-29918575 Msa0159450:five_prime_UTR 45.0%
AACTGACCGAAAAACTCCAC+CGG + chr1_4:29918578-29918597 None:intergenic 45.0%
GGAACTATTGGGTTTGTGCA+TGG - chr1_4:29918714-29918733 Msa0159450:five_prime_UTR 45.0%
TTTATCACCAAGGCAAGGAC+TGG - chr1_4:29918950-29918969 Msa0159450:five_prime_UTR 45.0%
TGGTGAAGGCAAGAAACAGA+AGG - chr1_4:29919495-29919514 Msa0159450:five_prime_UTR 45.0%
GGTGAAGGCAAGAAACAGAA+GGG - chr1_4:29919496-29919515 Msa0159450:five_prime_UTR 45.0%
TACGGAGGAAGGGGAAAAAG+TGG + chr1_4:29915506-29915525 None:intergenic 50.0%
AAGAAGGGGTTACGGAGGAA+GGG + chr1_4:29915516-29915535 None:intergenic 50.0%
GAAGAAGGTGGTGAGTGGTT+TGG + chr1_4:29915633-29915652 None:intergenic 50.0%
!! GGCTTGTGTTGATAATGGGC+AGG - chr1_4:29915782-29915801 Msa0159450:intron 50.0%
TGGGCAGGCTGTGAAAAATG+GGG - chr1_4:29915797-29915816 Msa0159450:intron 50.0%
TTTGCCGGTGGAGAATTCCT+TGG - chr1_4:29915830-29915849 Msa0159450:intron 50.0%
CCAACCAAGGAATTCTCCAC+CGG + chr1_4:29915837-29915856 None:intergenic 50.0%
ATCACCCTAGCAACCAACCA+AGG + chr1_4:29915850-29915869 None:intergenic 50.0%
TGGAATGGTGAGTCGGGATT+TGG - chr1_4:29915876-29915895 Msa0159450:intron 50.0%
! TGAGTCGGGATTTGGTTTCG+TGG - chr1_4:29915884-29915903 Msa0159450:intron 50.0%
ATGGGCAGGCTGAGAATTAG+AGG - chr1_4:29916070-29916089 Msa0159450:intron 50.0%
TGGGCAGGCTGAGAATTAGA+GGG - chr1_4:29916071-29916090 Msa0159450:intron 50.0%
GTTTGTGCAGTTACGGCTTG+TGG - chr1_4:29916109-29916128 Msa0159450:intron 50.0%
! CGGTTCATGGGAGTGTGATT+AGG - chr1_4:29916162-29916181 Msa0159450:intron 50.0%
!!! GTTTTGGGGCATTGCATCCA+TGG - chr1_4:29916317-29916336 Msa0159450:intron 50.0%
TTGCATCCATGGGAATCCTG+AGG - chr1_4:29916328-29916347 Msa0159450:intron 50.0%
ATCCATGGGAATCCTGAGGA+TGG - chr1_4:29916332-29916351 Msa0159450:intron 50.0%
AACAAGCTCAGTCCATCCTC+AGG + chr1_4:29916347-29916366 None:intergenic 50.0%
! GTTGGGATGGAGAGTGTGAA+AGG - chr1_4:29916377-29916396 Msa0159450:CDS 50.0%
GCATTCTTTGTGCGTGTGCT+TGG - chr1_4:29916477-29916496 Msa0159450:intron 50.0%
GTGTCAAACAATCGGCGTGA+AGG - chr1_4:29916935-29916954 Msa0159450:intron 50.0%
CAACCACTGAACAACCTTGG+AGG - chr1_4:29917158-29917177 Msa0159450:five_prime_UTR 50.0%
GATCCTCCAAGGTTGTTCAG+TGG + chr1_4:29917164-29917183 None:intergenic 50.0%
! ATTCTGTGGGCACTGCTACA+AGG - chr1_4:29917478-29917497 Msa0159450:five_prime_UTR 50.0%
GATGGTGCTCATCGATGAGA+AGG - chr1_4:29917890-29917909 Msa0159450:five_prime_UTR 50.0%
AGAGAGTCGACAAGAGCAAG+AGG - chr1_4:29918503-29918522 Msa0159450:five_prime_UTR 50.0%
CCCGTCTCTTGTTCCTTTGT+CGG + chr1_4:29918549-29918568 None:intergenic 50.0%
CCGACAAAGGAACAAGAGAC+GGG - chr1_4:29918546-29918565 Msa0159450:five_prime_UTR 50.0%
TAAGGATCCAGTCCTTGCCT+TGG + chr1_4:29918960-29918979 None:intergenic 50.0%
GACAGAGTTTGTGCACGTTC+TGG - chr1_4:29919446-29919465 Msa0159450:five_prime_UTR 50.0%
TACGGAGGAAGGGGAAAAAG+TGG + chr1_4:29915506-29915525 None:intergenic 50.0%
AAGAAGGGGTTACGGAGGAA+GGG + chr1_4:29915516-29915535 None:intergenic 50.0%
GAAGAAGGTGGTGAGTGGTT+TGG + chr1_4:29915633-29915652 None:intergenic 50.0%
!! GGCTTGTGTTGATAATGGGC+AGG - chr1_4:29915782-29915801 Msa0159450:intron 50.0%
TGGGCAGGCTGTGAAAAATG+GGG - chr1_4:29915797-29915816 Msa0159450:intron 50.0%
TTTGCCGGTGGAGAATTCCT+TGG - chr1_4:29915830-29915849 Msa0159450:intron 50.0%
CCAACCAAGGAATTCTCCAC+CGG + chr1_4:29915837-29915856 None:intergenic 50.0%
ATCACCCTAGCAACCAACCA+AGG + chr1_4:29915850-29915869 None:intergenic 50.0%
TGGAATGGTGAGTCGGGATT+TGG - chr1_4:29915876-29915895 Msa0159450:intron 50.0%
! TGAGTCGGGATTTGGTTTCG+TGG - chr1_4:29915884-29915903 Msa0159450:intron 50.0%
ATGGGCAGGCTGAGAATTAG+AGG - chr1_4:29916070-29916089 Msa0159450:intron 50.0%
TGGGCAGGCTGAGAATTAGA+GGG - chr1_4:29916071-29916090 Msa0159450:intron 50.0%
GTTTGTGCAGTTACGGCTTG+TGG - chr1_4:29916109-29916128 Msa0159450:intron 50.0%
! CGGTTCATGGGAGTGTGATT+AGG - chr1_4:29916162-29916181 Msa0159450:intron 50.0%
!!! GTTTTGGGGCATTGCATCCA+TGG - chr1_4:29916317-29916336 Msa0159450:intron 50.0%
TTGCATCCATGGGAATCCTG+AGG - chr1_4:29916328-29916347 Msa0159450:intron 50.0%
ATCCATGGGAATCCTGAGGA+TGG - chr1_4:29916332-29916351 Msa0159450:intron 50.0%
AACAAGCTCAGTCCATCCTC+AGG + chr1_4:29916347-29916366 None:intergenic 50.0%
! GTTGGGATGGAGAGTGTGAA+AGG - chr1_4:29916377-29916396 Msa0159450:CDS 50.0%
GCATTCTTTGTGCGTGTGCT+TGG - chr1_4:29916477-29916496 Msa0159450:intron 50.0%
GTGTCAAACAATCGGCGTGA+AGG - chr1_4:29916935-29916954 Msa0159450:intron 50.0%
CAACCACTGAACAACCTTGG+AGG - chr1_4:29917158-29917177 Msa0159450:five_prime_UTR 50.0%
GATCCTCCAAGGTTGTTCAG+TGG + chr1_4:29917164-29917183 None:intergenic 50.0%
! ATTCTGTGGGCACTGCTACA+AGG - chr1_4:29917478-29917497 Msa0159450:five_prime_UTR 50.0%
GATGGTGCTCATCGATGAGA+AGG - chr1_4:29917890-29917909 Msa0159450:five_prime_UTR 50.0%
AGAGAGTCGACAAGAGCAAG+AGG - chr1_4:29918503-29918522 Msa0159450:five_prime_UTR 50.0%
CCCGTCTCTTGTTCCTTTGT+CGG + chr1_4:29918549-29918568 None:intergenic 50.0%
CCGACAAAGGAACAAGAGAC+GGG - chr1_4:29918546-29918565 Msa0159450:five_prime_UTR 50.0%
TAAGGATCCAGTCCTTGCCT+TGG + chr1_4:29918960-29918979 None:intergenic 50.0%
GACAGAGTTTGTGCACGTTC+TGG - chr1_4:29919446-29919465 Msa0159450:five_prime_UTR 50.0%
TGAAAGGTGGTGCATCGCCA+TGG + chr1_4:29915428-29915447 None:intergenic 55.0%
AGAAGGGGTTACGGAGGAAG+GGG + chr1_4:29915515-29915534 None:intergenic 55.0%
GAAGAAGGGGTTACGGAGGA+AGG + chr1_4:29915517-29915536 None:intergenic 55.0%
GTGAGAAGAAGGGGTTACGG+AGG + chr1_4:29915521-29915540 None:intergenic 55.0%
GGCGTGAGAAGAAGGGGTTA+CGG + chr1_4:29915524-29915543 None:intergenic 55.0%
AGATGGGGCGTGAGAAGAAG+GGG + chr1_4:29915530-29915549 None:intergenic 55.0%
GAGATGGGGCGTGAGAAGAA+GGG + chr1_4:29915531-29915550 None:intergenic 55.0%
AGAGATGGGGCGTGAGAAGA+AGG + chr1_4:29915532-29915551 None:intergenic 55.0%
CCGGTGGAGAATTCCTTGGT+TGG - chr1_4:29915834-29915853 Msa0159450:intron 55.0%
GTGCAGTTACGGCTTGTGGT+CGG - chr1_4:29916113-29916132 Msa0159450:intron 55.0%
AGTTACGGCTTGTGGTCGGT+CGG - chr1_4:29916117-29916136 Msa0159450:intron 55.0%
GTCCATCCTCAGGATTCCCA+TGG + chr1_4:29916337-29916356 None:intergenic 55.0%
!! GTGCAGATAGGGGTTTGGTG+AGG - chr1_4:29916426-29916445 Msa0159450:CDS 55.0%
TCTTTGTGCGTGTGCTTGGG+CGG - chr1_4:29916481-29916500 Msa0159450:intron 55.0%
TGGGCGGAACTGTTGAGTGA+AGG - chr1_4:29916497-29916516 Msa0159450:intron 55.0%
CGGAACTGTTGAGTGAAGGC+AGG - chr1_4:29916501-29916520 Msa0159450:intron 55.0%
!! GGGTTGCCTTGTGCTGATTC+TGG - chr1_4:29917004-29917023 Msa0159450:intron 55.0%
!! GGCACTGCTACAAGGTATCG+AGG - chr1_4:29917486-29917505 Msa0159450:five_prime_UTR 55.0%
AGACAGAGCTGCTGACACGA+AGG + chr1_4:29917638-29917657 None:intergenic 55.0%
TCGTTCCTGGGAAAGATGCG+TGG - chr1_4:29917793-29917812 Msa0159450:five_prime_UTR 55.0%
TTCCTGGGAAAGATGCGTGG+AGG - chr1_4:29917796-29917815 Msa0159450:five_prime_UTR 55.0%
ATCCTCCACGCATCTTTCCC+AGG + chr1_4:29917801-29917820 None:intergenic 55.0%
AAGAGACGGGAAAACACCGG+TGG - chr1_4:29918559-29918578 Msa0159450:five_prime_UTR 55.0%
TGAAAGGTGGTGCATCGCCA+TGG + chr1_4:29915428-29915447 None:intergenic 55.0%
AGAAGGGGTTACGGAGGAAG+GGG + chr1_4:29915515-29915534 None:intergenic 55.0%
GAAGAAGGGGTTACGGAGGA+AGG + chr1_4:29915517-29915536 None:intergenic 55.0%
GTGAGAAGAAGGGGTTACGG+AGG + chr1_4:29915521-29915540 None:intergenic 55.0%
GGCGTGAGAAGAAGGGGTTA+CGG + chr1_4:29915524-29915543 None:intergenic 55.0%
AGATGGGGCGTGAGAAGAAG+GGG + chr1_4:29915530-29915549 None:intergenic 55.0%
GAGATGGGGCGTGAGAAGAA+GGG + chr1_4:29915531-29915550 None:intergenic 55.0%
AGAGATGGGGCGTGAGAAGA+AGG + chr1_4:29915532-29915551 None:intergenic 55.0%
CCGGTGGAGAATTCCTTGGT+TGG - chr1_4:29915834-29915853 Msa0159450:intron 55.0%
GTGCAGTTACGGCTTGTGGT+CGG - chr1_4:29916113-29916132 Msa0159450:intron 55.0%
AGTTACGGCTTGTGGTCGGT+CGG - chr1_4:29916117-29916136 Msa0159450:intron 55.0%
GTCCATCCTCAGGATTCCCA+TGG + chr1_4:29916337-29916356 None:intergenic 55.0%
!! GTGCAGATAGGGGTTTGGTG+AGG - chr1_4:29916426-29916445 Msa0159450:CDS 55.0%
TCTTTGTGCGTGTGCTTGGG+CGG - chr1_4:29916481-29916500 Msa0159450:intron 55.0%
TGGGCGGAACTGTTGAGTGA+AGG - chr1_4:29916497-29916516 Msa0159450:intron 55.0%
CGGAACTGTTGAGTGAAGGC+AGG - chr1_4:29916501-29916520 Msa0159450:intron 55.0%
!! GGGTTGCCTTGTGCTGATTC+TGG - chr1_4:29917004-29917023 Msa0159450:intron 55.0%
!! GGCACTGCTACAAGGTATCG+AGG - chr1_4:29917486-29917505 Msa0159450:five_prime_UTR 55.0%
AGACAGAGCTGCTGACACGA+AGG + chr1_4:29917638-29917657 None:intergenic 55.0%
TCGTTCCTGGGAAAGATGCG+TGG - chr1_4:29917793-29917812 Msa0159450:five_prime_UTR 55.0%
TTCCTGGGAAAGATGCGTGG+AGG - chr1_4:29917796-29917815 Msa0159450:five_prime_UTR 55.0%
ATCCTCCACGCATCTTTCCC+AGG + chr1_4:29917801-29917820 None:intergenic 55.0%
AAGAGACGGGAAAACACCGG+TGG - chr1_4:29918559-29918578 Msa0159450:five_prime_UTR 55.0%
GTTACGGCTTGTGGTCGGTC+GGG - chr1_4:29916118-29916137 Msa0159450:intron 60.0%
GTTACGGCTTGTGGTCGGTC+GGG - chr1_4:29916118-29916137 Msa0159450:intron 60.0%
GCACCAGAATCGGAGCCGCA+CGG + chr1_4:29917385-29917404 None:intergenic 65.0%
GCGGCTCCGATTCTGGTGCA+TGG - chr1_4:29917386-29917405 Msa0159450:five_prime_UTR 65.0%
GCACCAGAATCGGAGCCGCA+CGG + chr1_4:29917385-29917404 None:intergenic 65.0%
GCGGCTCCGATTCTGGTGCA+TGG - chr1_4:29917386-29917405 Msa0159450:five_prime_UTR 65.0%
CCAGAATCGGAGCCGCACGG+TGG + chr1_4:29917382-29917401 None:intergenic 70.0%
CCACCGTGCGGCTCCGATTC+TGG - chr1_4:29917379-29917398 Msa0159450:five_prime_UTR 70.0%
CCAGAATCGGAGCCGCACGG+TGG + chr1_4:29917382-29917401 None:intergenic 70.0%
CCACCGTGCGGCTCCGATTC+TGG - chr1_4:29917379-29917398 Msa0159450:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 29915410 29919523 29915410 ID=Msa0159450;Name=Msa0159450
chr1_4 mRNA 29915410 29919523 29915410 ID=Msa0159450-mRNA-1;Parent=Msa0159450;Name=Msa0159450-mRNA-1;_AED=0.08;_eAED=0.11;_QI=2494|0|0.33|1|0|0.33|3|0|98
chr1_4 exon 29915410 29915590 29915410 ID=Msa0159450-mRNA-1:exon:9646;Parent=Msa0159450-mRNA-1
chr1_4 exon 29916356 29916463 29916356 ID=Msa0159450-mRNA-1:exon:9645;Parent=Msa0159450-mRNA-1
chr1_4 exon 29917022 29919523 29917022 ID=Msa0159450-mRNA-1:exon:9644;Parent=Msa0159450-mRNA-1
chr1_4 five_prime_UTR 29917030 29919523 29917030 ID=Msa0159450-mRNA-1:five_prime_utr;Parent=Msa0159450-mRNA-1
chr1_4 CDS 29917022 29917029 29917022 ID=Msa0159450-mRNA-1:cds;Parent=Msa0159450-mRNA-1
chr1_4 CDS 29916356 29916463 29916356 ID=Msa0159450-mRNA-1:cds;Parent=Msa0159450-mRNA-1
chr1_4 CDS 29915410 29915590 29915410 ID=Msa0159450-mRNA-1:cds;Parent=Msa0159450-mRNA-1
Gene Sequence

>Msa0159450

ATGAGAAGACGGAAAACTCATTTGACGAAGGACGCGAAAAAAGAGAGTCGACAAGAGCAAGAGGACGCTAGAAAAGAGTACAATCCGACAAAGGAACAAGAGACGGGAAAACACCGGAATCCTACATGTTCAAATTGTGACAATCCAACTATTATTAGTGAGATTTCACTAGAGCAACACCGTCTTCAAATTGAAAATGCTAGGTTGAAGGATAAGTTAGACAGAGTTTGTGCACGTTCTGGCACGCACTTATTTGATGAGATTGAGATGGTGAAGGCAAGAAACAGAAGGGTTTAG
Protein sequence

>Msa0159450

MRRRKTHLTKDAKKESRQEQEDARKEYNPTKEQETGKHRNPTCSNCDNPTIISEISLEQHRLQIENARLKDKLDRVCARSGTHLFDEIEMVKARNRRV*