Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166830 | AES60780.1 | 99.206 | 252 | 2 | 0 | 1 | 252 | 1 | 252 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166830 | sp|Q9LFF9|IPYR4_ARATH | 84.722 | 216 | 33 | 0 | 37 | 252 | 1 | 216 | 2.21e-138 | 390 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166830 | G7ICM1 | 99.206 | 252 | 2 | 0 | 1 | 252 | 1 | 252 | 0.0 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0166830 | Msa0301520 | 0.802667 | 5.032080e-49 | -8.615850e-47 |
| Msa0166830 | Msa0339020 | 0.809443 | 1.887585e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166830 | MtrunA17_Chr1g0182331 | 100.000 | 216 | 0 | 0 | 37 | 252 | 1 | 216 | 3.84e-162 | 447 |
| Msa0166830 | MtrunA17_Chr1g0200691 | 74.419 | 258 | 26 | 2 | 21 | 239 | 29 | 285 | 4.26e-133 | 377 |
| Msa0166830 | MtrunA17_Chr8g0345781 | 79.263 | 217 | 44 | 1 | 37 | 252 | 1 | 217 | 1.04e-128 | 363 |
| Msa0166830 | MtrunA17_Chr5g0404551 | 82.741 | 197 | 34 | 0 | 56 | 252 | 17 | 213 | 1.05e-125 | 355 |
| Msa0166830 | MtrunA17_Chr8g0372981 | 80.676 | 207 | 37 | 2 | 49 | 252 | 20 | 226 | 1.49e-123 | 350 |
| Msa0166830 | MtrunA17_Chr7g0276441 | 81.034 | 174 | 32 | 1 | 79 | 252 | 21 | 193 | 7.56e-103 | 296 |
| Msa0166830 | MtrunA17_Chr1g0210921 | 49.412 | 85 | 38 | 3 | 171 | 250 | 12 | 96 | 1.55e-18 | 79.0 |
| Msa0166830 | MtrunA17_Chr2g0280151 | 34.356 | 163 | 80 | 6 | 75 | 213 | 82 | 241 | 8.22e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166830 | AT3G53620.1 | 84.722 | 216 | 33 | 0 | 37 | 252 | 1 | 216 | 2.24e-139 | 390 |
| Msa0166830 | AT1G01050.1 | 86.802 | 197 | 26 | 0 | 56 | 252 | 16 | 212 | 6.52e-130 | 366 |
| Msa0166830 | AT1G01050.2 | 86.802 | 197 | 26 | 0 | 56 | 252 | 16 | 212 | 6.52e-130 | 366 |
| Msa0166830 | AT2G46860.1 | 84.264 | 197 | 31 | 0 | 56 | 252 | 20 | 216 | 1.59e-127 | 360 |
| Msa0166830 | AT4G01480.1 | 78.302 | 212 | 45 | 1 | 42 | 252 | 5 | 216 | 4.38e-123 | 349 |
| Msa0166830 | AT4G01480.2 | 78.302 | 212 | 45 | 1 | 42 | 252 | 5 | 216 | 4.38e-123 | 349 |
| Msa0166830 | AT2G18230.1 | 79.487 | 195 | 40 | 0 | 58 | 252 | 24 | 218 | 9.76e-117 | 333 |
| Msa0166830 | AT5G09650.1 | 34.161 | 161 | 83 | 5 | 75 | 213 | 92 | 251 | 7.24e-16 | 75.9 |
Find 101 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAACTTTGTTAAATTT+TGG | 0.082092 | 1_4:+48428076 | Msa0166830:three_prime_UTR |
| CAAGAAAACTGGACTTATTA+AGG | 0.226202 | 1_4:+48425998 | Msa0166830:CDS |
| TTGAAGATCTTGGGAGCTTC+AGG | 0.285820 | 1_4:-48425157 | None:intergenic |
| TCGCAGTGGGAATCTTGTTT+GGG | 0.291795 | 1_4:-48424905 | None:intergenic |
| TTCGCAGTGGGAATCTTGTT+TGG | 0.307210 | 1_4:-48424906 | None:intergenic |
| AATTGTAACTGTTAATGTTC+AGG | 0.318137 | 1_4:+48424199 | Msa0166830:intron |
| TTTCTTCGTGCCAAAGCTAT+TGG | 0.329768 | 1_4:+48427419 | Msa0166830:CDS |
| ACTGTTAATGTTCAGGCTAA+TGG | 0.334959 | 1_4:+48424206 | Msa0166830:exon |
| ATCTTGTTTGGGGTCTCAAT+TGG | 0.355560 | 1_4:-48424894 | None:intergenic |
| TATGAACTTGACAAGAAAAC+TGG | 0.356052 | 1_4:+48425987 | Msa0166830:CDS |
| CAACAGGAGCCAGTTCTTCC+TGG | 0.361097 | 1_4:+48427392 | Msa0166830:intron |
| AATTCATCAAGTACTATGTT+TGG | 0.372862 | 1_4:-48428198 | None:intergenic |
| GCTTACACAATTGAAGATCT+TGG | 0.376721 | 1_4:-48425167 | None:intergenic |
| GTTGTGTATCCTCACAACTA+TGG | 0.379576 | 1_4:+48426127 | Msa0166830:CDS |
| GATGTGAACCCCACTAATTA+AGG | 0.402227 | 1_4:-48428237 | None:intergenic |
| ATAATAACCAAGACATCAAT+GGG | 0.410303 | 1_4:-48426184 | None:intergenic |
| TTGTTTGGGGTCTCAATTGG+TGG | 0.420292 | 1_4:-48424891 | None:intergenic |
| CCATGGCATGATCTTGAGAT+AGG | 0.421733 | 1_4:+48424999 | Msa0166830:CDS |
| CATAATAACCAAGACATCAA+TGG | 0.424808 | 1_4:-48426185 | None:intergenic |
| TGATGTCTTGGTTATTATGC+AGG | 0.426309 | 1_4:+48426189 | Msa0166830:CDS |
| TGCTTAAGTAGAGGTCGAAA+TGG | 0.429880 | 1_4:-48423775 | None:intergenic |
| CTTACACAATTGAAGATCTT+GGG | 0.443122 | 1_4:-48425166 | None:intergenic |
| AGAAAACAGCCAGGAAGAAC+TGG | 0.443131 | 1_4:-48427401 | None:intergenic |
| GACAAATGTACATGCTATAT+AGG | 0.444522 | 1_4:-48428015 | None:intergenic |
| ATCTCGAGGGAGAGAGAATA+CGG | 0.444997 | 1_4:-48423881 | None:intergenic |
| GGCGGTAGTATTGATGCATA+TGG | 0.450578 | 1_4:+48427902 | Msa0166830:exon |
| CAGGCTAATGGCTTCTGAAT+CGG | 0.459794 | 1_4:+48424218 | Msa0166830:CDS |
| TCAGATACCTGATCAATCAT+AGG | 0.466855 | 1_4:-48427449 | None:intergenic |
| ACTACGTTGTGGAGAGTTTG+AGG | 0.477682 | 1_4:+48427881 | Msa0166830:CDS |
| GGAGAGAGAATACGGAAGTA+AGG | 0.480258 | 1_4:-48423873 | None:intergenic |
| ACGATTTCAGAAACTGCAAT+TGG | 0.481587 | 1_4:-48424360 | None:intergenic |
| CACAACGTAGTCTGCATACA+AGG | 0.481707 | 1_4:-48427869 | None:intergenic |
| GGATGCAAAGGAAGGGAAAG+AGG | 0.486169 | 1_4:-48423799 | None:intergenic |
| TCTCATGCCTATGATTGATC+AGG | 0.492132 | 1_4:+48427442 | Msa0166830:CDS |
| CTTGTTGAGGATGCAAAGGA+AGG | 0.495192 | 1_4:-48423807 | None:intergenic |
| TTGTGTATCCTCACAACTAT+GGG | 0.498500 | 1_4:+48426128 | Msa0166830:CDS |
| CTTAAACAGAAAAGTGGAAG+CGG | 0.498946 | 1_4:+48423715 | None:intergenic |
| AACGTGAAGAAGGAATGAAA+TGG | 0.503173 | 1_4:-48423848 | None:intergenic |
| AGGCATGAGACCAATAGCTT+TGG | 0.503559 | 1_4:-48427429 | None:intergenic |
| GAAGAAGGAATGAAATGGAA+TGG | 0.503560 | 1_4:-48423843 | None:intergenic |
| GGTCTGTTGCTGCTCATCCA+TGG | 0.504186 | 1_4:+48424982 | Msa0166830:CDS |
| ACCATCCTCACAAATAGTGC+GGG | 0.507168 | 1_4:-48426158 | None:intergenic |
| AATATGCATGTGTTGTCAGC+TGG | 0.509898 | 1_4:-48428040 | None:intergenic |
| CCCCGCACTATTTGTGAGGA+TGG | 0.512555 | 1_4:+48426157 | Msa0166830:CDS |
| TGCTATATAGGATAGGATTA+CGG | 0.512938 | 1_4:-48428003 | None:intergenic |
| TTCTTTCATCATTGACTAGG+AGG | 0.518191 | 1_4:+48424961 | Msa0166830:CDS |
| AAGTACTATGTTTGGATGAG+AGG | 0.518394 | 1_4:-48428190 | None:intergenic |
| TAGGCATTACAATGATATCA+AGG | 0.527302 | 1_4:+48427598 | Msa0166830:CDS |
| CGCAGTGGGAATCTTGTTTG+GGG | 0.532308 | 1_4:-48424904 | None:intergenic |
| TAGGTGGTTGAAATTGGGAA+AGG | 0.533306 | 1_4:+48425951 | Msa0166830:intron |
| TGGTGACCCCATTGATGTCT+TGG | 0.533354 | 1_4:+48426177 | Msa0166830:CDS |
| TGTGCTTCCTCTTCAACTGT+CGG | 0.533610 | 1_4:+48423905 | Msa0166830:five_prime_UTR |
| AATGGTTGCTTTGCTTGTTG+AGG | 0.537493 | 1_4:-48423820 | None:intergenic |
| ATCCTCTCATTCAGAGGTGG+AGG | 0.538136 | 1_4:-48424939 | None:intergenic |
| AAGAGGAAGCACAGATCTCG+AGG | 0.542306 | 1_4:-48423895 | None:intergenic |
| AAGTAAGGAAAACGTGAAGA+AGG | 0.543930 | 1_4:-48423858 | None:intergenic |
| GCTTAAGTAGAGGTCGAAAT+GGG | 0.544942 | 1_4:-48423774 | None:intergenic |
| GGAATGCTCAATAGCTTCAA+AGG | 0.545999 | 1_4:-48427726 | None:intergenic |
| CTCATTCAGAGGTGGAGGTG+AGG | 0.547697 | 1_4:-48424934 | None:intergenic |
| GGATTCTTTCATCATTGACT+AGG | 0.553023 | 1_4:+48424958 | Msa0166830:CDS |
| ATTTCAGAAACTGCAATTGG+TGG | 0.561215 | 1_4:-48424357 | None:intergenic |
| CACCTCCACCTCTGAATGAG+AGG | 0.565786 | 1_4:+48424937 | Msa0166830:CDS |
| GATACACAACTGATGAGTAA+AGG | 0.570339 | 1_4:-48426114 | None:intergenic |
| TTTATATGTGTAGGTTGACC+GGG | 0.574546 | 1_4:+48426090 | Msa0166830:intron |
| CAAAGGCAGATGAGGAAGGA+AGG | 0.576115 | 1_4:-48427709 | None:intergenic |
| TTAAACAGAAAAGTGGAAGC+GGG | 0.579424 | 1_4:+48423716 | None:intergenic |
| GTGCTGATGATCCTGAGTAT+AGG | 0.582724 | 1_4:+48427579 | Msa0166830:CDS |
| GCGGTAGTATTGATGCATAT+GGG | 0.588298 | 1_4:+48427903 | Msa0166830:exon |
| ATGTACATGCTATATAGGAT+AGG | 0.592686 | 1_4:-48428010 | None:intergenic |
| AATAGCTTCAAAGGCAGATG+AGG | 0.596063 | 1_4:-48427717 | None:intergenic |
| TGAAATTGGGAAAGGAAACA+AGG | 0.596735 | 1_4:+48425959 | Msa0166830:CDS |
| ATATGCATGTGTTGTCAGCT+GGG | 0.599753 | 1_4:-48428039 | None:intergenic |
| GCTTCAAAGGCAGATGAGGA+AGG | 0.607869 | 1_4:-48427713 | None:intergenic |
| CACCATCCTCACAAATAGTG+CGG | 0.608255 | 1_4:-48426159 | None:intergenic |
| AAACGCACCGACAGTTGAAG+AGG | 0.611901 | 1_4:-48423912 | None:intergenic |
| ATTTCAGCTAAACGATGTGG+AGG | 0.614529 | 1_4:-48427626 | None:intergenic |
| CCTATCTCAAGATCATGCCA+TGG | 0.616088 | 1_4:-48424999 | None:intergenic |
| GAAAGAGGATGCTTAAGTAG+AGG | 0.622086 | 1_4:-48423784 | None:intergenic |
| TCATTGTAATGCCTATACTC+AGG | 0.624794 | 1_4:-48427590 | None:intergenic |
| TTGGCACGAAGAAAACAGCC+AGG | 0.627380 | 1_4:-48427410 | None:intergenic |
| GGTGAGGTGTAATTCGCAGT+GGG | 0.628321 | 1_4:-48424918 | None:intergenic |
| GAAAGAATCCTCTCATTCAG+AGG | 0.629431 | 1_4:-48424945 | None:intergenic |
| TTACAAGAAGAATGAGAACA+AGG | 0.636721 | 1_4:+48427667 | Msa0166830:CDS |
| TTGTTGAGGATGCAAAGGAA+GGG | 0.641868 | 1_4:-48423806 | None:intergenic |
| AGGAATGAAATGGAATGGAA+TGG | 0.648925 | 1_4:-48423838 | None:intergenic |
| TTTGCTTGTTGAGGATGCAA+AGG | 0.649239 | 1_4:-48423811 | None:intergenic |
| AGAATCCTCTCATTCAGAGG+TGG | 0.649568 | 1_4:-48424942 | None:intergenic |
| CCATCCTCACAAATAGTGCG+GGG | 0.650576 | 1_4:-48426157 | None:intergenic |
| CGGATTTCAGCTAAACGATG+TGG | 0.654970 | 1_4:-48427629 | None:intergenic |
| GGGATAAACCCATAGTTGTG+AGG | 0.674435 | 1_4:-48426136 | None:intergenic |
| AGGTGAGGTGTAATTCGCAG+TGG | 0.675881 | 1_4:-48424919 | None:intergenic |
| CAACTGATGAGTAAAGGACC+CGG | 0.675914 | 1_4:-48426108 | None:intergenic |
| AGAGGAAGCACAGATCTCGA+GGG | 0.683236 | 1_4:-48423894 | None:intergenic |
| TTTCAGCTAAACGATGTGGA+GGG | 0.687080 | 1_4:-48427625 | None:intergenic |
| GAAATGGGAAAATGTGAGTG+AGG | 0.688513 | 1_4:-48423759 | None:intergenic |
| CATCCTCACAAATAGTGCGG+GGG | 0.690869 | 1_4:-48426156 | None:intergenic |
| GATGAGAGGAAAGAATCGAG+TGG | 0.700783 | 1_4:-48428176 | None:intergenic |
| TGAATCGGAAACTGTCACTG+TGG | 0.703517 | 1_4:+48424233 | Msa0166830:CDS |
| CTTGTATGCAGACTACGTTG+TGG | 0.725981 | 1_4:+48427870 | Msa0166830:CDS |
| ACGTTGTGGAGAGTTTGAGG+CGG | 0.743485 | 1_4:+48427884 | Msa0166830:CDS |
| TAATAACCAAGACATCAATG+GGG | 0.783648 | 1_4:-48426183 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTAAAAATATAT+TGG | + | chr1_4:48426715-48426734 | Msa0166830:intron | 0.0% |
| !!! | ATTAGTTTAATCTTAAAAAA+TGG | + | chr1_4:48424529-48424548 | Msa0166830:intron | 10.0% |
| !!! | AAGTATTAATTTTTGTAAAT+TGG | + | chr1_4:48426829-48426848 | Msa0166830:intron | 10.0% |
| !!! | AGTATTAATTTTTGTAAATT+GGG | + | chr1_4:48426830-48426849 | Msa0166830:intron | 10.0% |
| !!! | ACTTTTTTTTTTCTTTTTTC+TGG | + | chr1_4:48424720-48424739 | Msa0166830:intron | 15.0% |
| !!! | CTTTTTTTTTTCTTTTTTCT+GGG | + | chr1_4:48424721-48424740 | Msa0166830:intron | 15.0% |
| !!! | TTTTTTTTTTCTTTTTTCTG+GGG | + | chr1_4:48424722-48424741 | Msa0166830:intron | 15.0% |
| !!! | ACATAATTTCAATGATATTT+TGG | - | chr1_4:48424773-48424792 | None:intergenic | 15.0% |
| !!! | TTATAATGATTTTTTGAAGA+AGG | + | chr1_4:48424818-48424837 | Msa0166830:intron | 15.0% |
| !!! | TTATTTTGTAATGTTGTATT+TGG | + | chr1_4:48425099-48425118 | Msa0166830:intron | 15.0% |
| !!! | AATCATCATAAAAGATATTT+TGG | - | chr1_4:48425440-48425459 | None:intergenic | 15.0% |
| !!! | TATGATGATTATTTTTTCTA+TGG | + | chr1_4:48425450-48425469 | Msa0166830:intron | 15.0% |
| !!! | TTGAAATATTGATGAATTTT+AGG | + | chr1_4:48425932-48425951 | Msa0166830:intron | 15.0% |
| !!! | TGCATTGAATTTTTTTTTTT+TGG | + | chr1_4:48427185-48427204 | Msa0166830:intron | 15.0% |
| !!! | ATTTATTTTTATTGTTGTGA+AGG | + | chr1_4:48427845-48427864 | Msa0166830:intron | 15.0% |
| !!! | AATGAAATTTTCTCAAGTAT+TGG | - | chr1_4:48424035-48424054 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTGTGAGATTAA+GGG | + | chr1_4:48424440-48424459 | Msa0166830:intron | 20.0% |
| !! | AAAAAAAAAGTTATGATGCA+TGG | - | chr1_4:48424711-48424730 | None:intergenic | 20.0% |
| !!! | ACGATTTGTTTATTTTTTTC+AGG | + | chr1_4:48424854-48424873 | Msa0166830:intron | 20.0% |
| !!! | AGCAGTTTTATTATAAGAAA+TGG | + | chr1_4:48425602-48425621 | Msa0166830:intron | 20.0% |
| !!! | AAATATTGATGAATTTTAGG+TGG | + | chr1_4:48425935-48425954 | Msa0166830:intron | 20.0% |
| !!! | CTTTTGTAATTCAAAGAATA+AGG | - | chr1_4:48426357-48426376 | None:intergenic | 20.0% |
| !! | CTTATTCTTTGAATTACAAA+AGG | + | chr1_4:48426355-48426374 | Msa0166830:intron | 20.0% |
| !! | AAAATATATTGGATACCTTA+AGG | + | chr1_4:48426726-48426745 | Msa0166830:intron | 20.0% |
| !! | ACGTCAAAAATTTCAAATTT+AGG | - | chr1_4:48427097-48427116 | None:intergenic | 20.0% |
| !!! | TTGTGAGTAAATTTTGAATA+TGG | + | chr1_4:48427235-48427254 | Msa0166830:intron | 20.0% |
| !! | TACAATTTCACAATAATACA+TGG | + | chr1_4:48427267-48427286 | Msa0166830:intron | 20.0% |
| !! | ACTAATTCTTATGAAATTCA+GGG | + | chr1_4:48427527-48427546 | Msa0166830:intron | 20.0% |
| !!! | TGCTTAACTTTGTTAAATTT+TGG | + | chr1_4:48428076-48428095 | Msa0166830:three_prime_UTR | 20.0% |
| ! | GAAAAGACTATGAAATGAAA+CGG | - | chr1_4:48423958-48423977 | None:intergenic | 25.0% |
| ! | AATTGTAACTGTTAATGTTC+AGG | + | chr1_4:48424199-48424218 | Msa0166830:intron | 25.0% |
| !!! | ATGTTTTCTTTGCTTTTGAA+AGG | + | chr1_4:48424320-48424339 | Msa0166830:intron | 25.0% |
| !!! | TGTTTTCTTTGCTTTTGAAA+GGG | + | chr1_4:48424321-48424340 | Msa0166830:intron | 25.0% |
| ! | TGCAATCTTGTTAATTCATT+TGG | + | chr1_4:48424412-48424431 | Msa0166830:intron | 25.0% |
| !!! | CATTTTGTTTTGTGAGATTA+AGG | + | chr1_4:48424439-48424458 | Msa0166830:intron | 25.0% |
| !!! | ACATTTTTTACTTTGTATGC+TGG | + | chr1_4:48425261-48425280 | Msa0166830:intron | 25.0% |
| ! | TTTGAACTTGTACATTCTTA+AGG | + | chr1_4:48425847-48425866 | Msa0166830:intron | 25.0% |
| !!! | AATTTTAGGTGGTTGAAATT+GGG | + | chr1_4:48425946-48425965 | Msa0166830:intron | 25.0% |
| ! | ATAATAACCAAGACATCAAT+GGG | - | chr1_4:48426187-48426206 | None:intergenic | 25.0% |
| ! | GTATAATAATAGTCAACTTC+TGG | + | chr1_4:48426430-48426449 | Msa0166830:intron | 25.0% |
| ! | GTAAATTGGGATCATTATAT+TGG | + | chr1_4:48426843-48426862 | Msa0166830:intron | 25.0% |
| !! | GTTGTTTATATGGTATGTTT+TGG | + | chr1_4:48426922-48426941 | Msa0166830:intron | 25.0% |
| !!! | TATGGTATGTTTTGGTTTAA+AGG | + | chr1_4:48426930-48426949 | Msa0166830:intron | 25.0% |
| !! | TTCAAATTTAGGATACGATA+CGG | - | chr1_4:48427086-48427105 | None:intergenic | 25.0% |
| ! | CACTAATTCTTATGAAATTC+AGG | + | chr1_4:48427526-48427545 | Msa0166830:intron | 25.0% |
| !!! | TCCTGGAAATTATGTTTTAA+CGG | - | chr1_4:48427795-48427814 | None:intergenic | 25.0% |
| ! | AATTCATCAAGTACTATGTT+TGG | - | chr1_4:48428201-48428220 | None:intergenic | 25.0% |
| ATAAAAAATGAAGTTGCGTG+TGG | - | chr1_4:48424003-48424022 | None:intergenic | 30.0% | |
| ATAACATGGAGTTTGCAAAA+CGG | - | chr1_4:48424090-48424109 | None:intergenic | 30.0% | |
| TCAGTAACTCAACAATAACA+TGG | - | chr1_4:48424104-48424123 | None:intergenic | 30.0% | |
| ! | ATGTCCAAACATGATAATGA+TGG | + | chr1_4:48424789-48424808 | Msa0166830:intron | 30.0% |
| AGATCCATCATTATCATGTT+TGG | - | chr1_4:48424796-48424815 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCAGGCTGAAGAAA+TGG | + | chr1_4:48424866-48424885 | Msa0166830:intron | 30.0% |
| !! | TAGTGTTTTTCGAACAATGT+AGG | + | chr1_4:48425133-48425152 | Msa0166830:intron | 30.0% |
| CTTACACAATTGAAGATCTT+GGG | - | chr1_4:48425169-48425188 | None:intergenic | 30.0% | |
| ! | GCTGGAATGAAATTTTGTAA+TGG | + | chr1_4:48425279-48425298 | Msa0166830:intron | 30.0% |
| TAATTGTGATAGAGAGAACA+TGG | + | chr1_4:48425313-48425332 | Msa0166830:intron | 30.0% | |
| CTGCTTAACTAGATAAATCA+AGG | - | chr1_4:48425587-48425606 | None:intergenic | 30.0% | |
| ! | ATTAAGTCTGATTTGTGTTC+AGG | - | chr1_4:48425679-48425698 | None:intergenic | 30.0% |
| AGAATGTACAAGTTCAAAAG+AGG | - | chr1_4:48425845-48425864 | None:intergenic | 30.0% | |
| TTATGTTGTGATCTTCATTG+AGG | + | chr1_4:48425886-48425905 | Msa0166830:intron | 30.0% | |
| TATGTTGTGATCTTCATTGA+GGG | + | chr1_4:48425887-48425906 | Msa0166830:intron | 30.0% | |
| !! | GAATTTTAGGTGGTTGAAAT+TGG | + | chr1_4:48425945-48425964 | Msa0166830:intron | 30.0% |
| TATGAACTTGACAAGAAAAC+TGG | + | chr1_4:48425987-48426006 | Msa0166830:CDS | 30.0% | |
| CAAGAAAACTGGACTTATTA+AGG | + | chr1_4:48425998-48426017 | Msa0166830:CDS | 30.0% | |
| TGGACTTATTAAGGTGATTA+TGG | + | chr1_4:48426007-48426026 | Msa0166830:intron | 30.0% | |
| ! | ACACATATAAAAGCATGCTT+AGG | - | chr1_4:48426081-48426100 | None:intergenic | 30.0% |
| ! | AAGCATGCTTTTATATGTGT+AGG | + | chr1_4:48426081-48426100 | Msa0166830:intron | 30.0% |
| !! | TTTTATATGTGTAGGTTGAC+CGG | + | chr1_4:48426089-48426108 | Msa0166830:intron | 30.0% |
| TAATAACCAAGACATCAATG+GGG | - | chr1_4:48426186-48426205 | None:intergenic | 30.0% | |
| CATAATAACCAAGACATCAA+TGG | - | chr1_4:48426188-48426207 | None:intergenic | 30.0% | |
| !! | CAACGAAAAGTTAATTTGCA+AGG | - | chr1_4:48426243-48426262 | None:intergenic | 30.0% |
| TGCAATTCTGTTCTCAAATT+TGG | + | chr1_4:48426306-48426325 | Msa0166830:intron | 30.0% | |
| GGATTCTGTTATTAGTTATG+TGG | + | chr1_4:48426327-48426346 | Msa0166830:intron | 30.0% | |
| TGATTTCAAATGCAAGAAGT+TGG | + | chr1_4:48426460-48426479 | Msa0166830:intron | 30.0% | |
| ATAGCTCAGAAGTAAAGATA+AGG | - | chr1_4:48426581-48426600 | None:intergenic | 30.0% | |
| TAAATCATTCGGATACTTCT+GGG | - | chr1_4:48426690-48426709 | None:intergenic | 30.0% | |
| TTAAATCATTCGGATACTTC+TGG | - | chr1_4:48426691-48426710 | None:intergenic | 30.0% | |
| TAAATCATTCGGATACTTCT+GGG | - | chr1_4:48426690-48426709 | None:intergenic | 30.0% | |
| TTAAATCATTCGGATACTTC+TGG | - | chr1_4:48426691-48426710 | None:intergenic | 30.0% | |
| ATATTGGCCATTACTTGAAA+AGG | + | chr1_4:48426859-48426878 | Msa0166830:intron | 30.0% | |
| TATTGGCCATTACTTGAAAA+GGG | + | chr1_4:48426860-48426879 | Msa0166830:intron | 30.0% | |
| CATATTGCAGGTTGTTTATA+TGG | + | chr1_4:48426912-48426931 | Msa0166830:intron | 30.0% | |
| GGTTTAAAGGATATCTTAGT+TGG | + | chr1_4:48426943-48426962 | Msa0166830:intron | 30.0% | |
| TACACCAAGTCAAAATACAA+TGG | - | chr1_4:48426977-48426996 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGCCAACTCA+AGG | + | chr1_4:48427196-48427215 | Msa0166830:intron | 30.0% |
| !!! | ATTCTTTTTTGTGCTACAAC+AGG | + | chr1_4:48427376-48427395 | Msa0166830:intron | 30.0% |
| TAGGCATTACAATGATATCA+AGG | + | chr1_4:48427598-48427617 | Msa0166830:CDS | 30.0% | |
| TGTAATCTTCAAAAAAGCGA+CGG | - | chr1_4:48427652-48427671 | None:intergenic | 30.0% | |
| TTACAAGAAGAATGAGAACA+AGG | + | chr1_4:48427667-48427686 | Msa0166830:CDS | 30.0% | |
| TTCCATGTAAGTAACAATGA+TGG | + | chr1_4:48427745-48427764 | Msa0166830:intron | 30.0% | |
| TCCATGTAAGTAACAATGAT+GGG | + | chr1_4:48427746-48427765 | Msa0166830:intron | 30.0% | |
| TCCGTTAAAACATAATTTCC+AGG | + | chr1_4:48427791-48427810 | Msa0166830:intron | 30.0% | |
| ! | AGGATTTCAGTTTTCATACT+CGG | + | chr1_4:48427811-48427830 | Msa0166830:intron | 30.0% |
| TGCTATATAGGATAGGATTA+CGG | - | chr1_4:48428006-48428025 | None:intergenic | 30.0% | |
| ATGTACATGCTATATAGGAT+AGG | - | chr1_4:48428013-48428032 | None:intergenic | 30.0% | |
| GACAAATGTACATGCTATAT+AGG | - | chr1_4:48428018-48428037 | None:intergenic | 30.0% | |
| AGGAATGAAATGGAATGGAA+TGG | - | chr1_4:48423841-48423860 | None:intergenic | 35.0% | |
| GAAGAAGGAATGAAATGGAA+TGG | - | chr1_4:48423846-48423865 | None:intergenic | 35.0% | |
| AACGTGAAGAAGGAATGAAA+TGG | - | chr1_4:48423851-48423870 | None:intergenic | 35.0% | |
| AAGTAAGGAAAACGTGAAGA+AGG | - | chr1_4:48423861-48423880 | None:intergenic | 35.0% | |
| AAGACTATGAAATGAAACGG+TGG | - | chr1_4:48423955-48423974 | None:intergenic | 35.0% | |
| ACTGTTAATGTTCAGGCTAA+TGG | + | chr1_4:48424206-48424225 | Msa0166830:exon | 35.0% | |
| ATTTCAGAAACTGCAATTGG+TGG | - | chr1_4:48424360-48424379 | None:intergenic | 35.0% | |
| ACGATTTCAGAAACTGCAAT+TGG | - | chr1_4:48424363-48424382 | None:intergenic | 35.0% | |
| ! | GGATTCTTTCATCATTGACT+AGG | + | chr1_4:48424958-48424977 | Msa0166830:CDS | 35.0% |
| ! | TTCTTTCATCATTGACTAGG+AGG | + | chr1_4:48424961-48424980 | Msa0166830:CDS | 35.0% |
| GCTTACACAATTGAAGATCT+TGG | - | chr1_4:48425170-48425189 | None:intergenic | 35.0% | |
| !! | ACTAAGGGCTTGTTTACTTT+TGG | - | chr1_4:48425494-48425513 | None:intergenic | 35.0% |
| CTACGTGAATCATCAACTAA+GGG | - | chr1_4:48425509-48425528 | None:intergenic | 35.0% | |
| ACTACGTGAATCATCAACTA+AGG | - | chr1_4:48425510-48425529 | None:intergenic | 35.0% | |
| TATATTGCTGACCTGTTGAA+TGG | + | chr1_4:48425632-48425651 | Msa0166830:intron | 35.0% | |
| TAGTAATGCTTGTGTGCTAT+AGG | + | chr1_4:48425702-48425721 | Msa0166830:intron | 35.0% | |
| AGTAATGCTTGTGTGCTATA+GGG | + | chr1_4:48425703-48425722 | Msa0166830:intron | 35.0% | |
| GATTGTTTCCAATCACAACT+TGG | + | chr1_4:48425813-48425832 | Msa0166830:intron | 35.0% | |
| GAACTTGTACATTCTTAAGG+TGG | + | chr1_4:48425850-48425869 | Msa0166830:intron | 35.0% | |
| TGAAATTGGGAAAGGAAACA+AGG | + | chr1_4:48425959-48425978 | Msa0166830:CDS | 35.0% | |
| AATGGCAACAAGTACAACAA+TGG | - | chr1_4:48426051-48426070 | None:intergenic | 35.0% | |
| ! | TTTATATGTGTAGGTTGACC+GGG | + | chr1_4:48426090-48426109 | Msa0166830:intron | 35.0% |
| GATACACAACTGATGAGTAA+AGG | - | chr1_4:48426117-48426136 | None:intergenic | 35.0% | |
| TTGTGTATCCTCACAACTAT+GGG | + | chr1_4:48426128-48426147 | Msa0166830:CDS | 35.0% | |
| TGATGTCTTGGTTATTATGC+AGG | + | chr1_4:48426189-48426208 | Msa0166830:CDS | 35.0% | |
| TTTCAAATGCAAGAAGTTGG+TGG | + | chr1_4:48426463-48426482 | Msa0166830:intron | 35.0% | |
| AGATAAGGCTCAATATGTCA+AGG | - | chr1_4:48426566-48426585 | None:intergenic | 35.0% | |
| GATACCTTAAGGATACGTTA+AGG | + | chr1_4:48426737-48426756 | Msa0166830:intron | 35.0% | |
| GTATCCTTAACGTATCCTTA+AGG | - | chr1_4:48426744-48426763 | None:intergenic | 35.0% | |
| !!! | TAGTCACCCTTTTCAAGTAA+TGG | - | chr1_4:48426869-48426888 | None:intergenic | 35.0% |
| TGACTATCTTCATACTACCT+TGG | + | chr1_4:48426883-48426902 | Msa0166830:intron | 35.0% | |
| !! | AGGATATCTTAGTTGGTGAA+TGG | + | chr1_4:48426950-48426969 | Msa0166830:intron | 35.0% |
| !!! | TGGTCCATTGTATTTTGACT+TGG | + | chr1_4:48426970-48426989 | Msa0166830:intron | 35.0% |
| !! | ACATTTTGATCACCTTGAGT+TGG | - | chr1_4:48427211-48427230 | None:intergenic | 35.0% |
| TCAGATACCTGATCAATCAT+AGG | - | chr1_4:48427452-48427471 | None:intergenic | 35.0% | |
| AAGAGAAGTTATTGCCATCT+GGG | - | chr1_4:48427487-48427506 | None:intergenic | 35.0% | |
| AAAGAGAAGTTATTGCCATC+TGG | - | chr1_4:48427488-48427507 | None:intergenic | 35.0% | |
| TCATTGTAATGCCTATACTC+AGG | - | chr1_4:48427593-48427612 | None:intergenic | 35.0% | |
| ! | ACCCATCATTGTTACTTACA+TGG | - | chr1_4:48427750-48427769 | None:intergenic | 35.0% |
| GAGTATGAAAACTGAAATCC+TGG | - | chr1_4:48427812-48427831 | None:intergenic | 35.0% | |
| ! | GATGCATATGGGATTTTGTT+TGG | + | chr1_4:48427914-48427933 | Msa0166830:three_prime_UTR | 35.0% |
| AAGTACTATGTTTGGATGAG+AGG | - | chr1_4:48428193-48428212 | None:intergenic | 35.0% | |
| GAAATGGGAAAATGTGAGTG+AGG | - | chr1_4:48423762-48423781 | None:intergenic | 40.0% | |
| GCTTAAGTAGAGGTCGAAAT+GGG | - | chr1_4:48423777-48423796 | None:intergenic | 40.0% | |
| TGCTTAAGTAGAGGTCGAAA+TGG | - | chr1_4:48423778-48423797 | None:intergenic | 40.0% | |
| GAAAGAGGATGCTTAAGTAG+AGG | - | chr1_4:48423787-48423806 | None:intergenic | 40.0% | |
| TTGTTGAGGATGCAAAGGAA+GGG | - | chr1_4:48423809-48423828 | None:intergenic | 40.0% | |
| ! | TTTGCTTGTTGAGGATGCAA+AGG | - | chr1_4:48423814-48423833 | None:intergenic | 40.0% |
| ! | AATGGTTGCTTTGCTTGTTG+AGG | - | chr1_4:48423823-48423842 | None:intergenic | 40.0% |
| AATGAAGTTGCGTGTGGTTA+TGG | - | chr1_4:48423997-48424016 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAAGGGTGTTTCTG+AGG | + | chr1_4:48424332-48424351 | Msa0166830:intron | 40.0% |
| ! | ATCTTGTTTGGGGTCTCAAT+TGG | - | chr1_4:48424897-48424916 | None:intergenic | 40.0% |
| GAAAGAATCCTCTCATTCAG+AGG | - | chr1_4:48424948-48424967 | None:intergenic | 40.0% | |
| CTTCAATTGTGTAAGCATGC+TGG | + | chr1_4:48425174-48425193 | Msa0166830:intron | 40.0% | |
| CAACAGGTCAGCAATATAAC+AGG | - | chr1_4:48425630-48425649 | None:intergenic | 40.0% | |
| GGTTAAGCGTTAAGCATGTT+GGG | + | chr1_4:48425724-48425743 | Msa0166830:intron | 40.0% | |
| GTTTCCAATCACAACTTGGA+CGG | + | chr1_4:48425817-48425836 | Msa0166830:intron | 40.0% | |
| TAGGTGGTTGAAATTGGGAA+AGG | + | chr1_4:48425951-48425970 | Msa0166830:intron | 40.0% | |
| GTTGTGTATCCTCACAACTA+TGG | + | chr1_4:48426127-48426146 | Msa0166830:CDS | 40.0% | |
| ! | CTTGCATTTGAAATCACAGC+TGG | - | chr1_4:48426456-48426475 | None:intergenic | 40.0% |
| !! | ATACTTCTGGGATACGTATC+CGG | - | chr1_4:48426678-48426697 | None:intergenic | 40.0% |
| !! | ATACTTCTGGGATACGTATC+CGG | - | chr1_4:48426678-48426697 | None:intergenic | 40.0% |
| CCTGCAATATGATGATACCA+AGG | - | chr1_4:48426903-48426922 | None:intergenic | 40.0% | |
| CCTTGGTATCATCATATTGC+AGG | + | chr1_4:48426900-48426919 | Msa0166830:intron | 40.0% | |
| ! | ATTTAGGATACGATACGGCT+TGG | - | chr1_4:48427081-48427100 | None:intergenic | 40.0% |
| TTTCTTCGTGCCAAAGCTAT+TGG | + | chr1_4:48427419-48427438 | Msa0166830:CDS | 40.0% | |
| TCTCATGCCTATGATTGATC+AGG | + | chr1_4:48427442-48427461 | Msa0166830:CDS | 40.0% | |
| AGTTATTGCCATCTGGGAAA+GGG | - | chr1_4:48427481-48427500 | None:intergenic | 40.0% | |
| AAGTTATTGCCATCTGGGAA+AGG | - | chr1_4:48427482-48427501 | None:intergenic | 40.0% | |
| TTTCAGCTAAACGATGTGGA+GGG | - | chr1_4:48427628-48427647 | None:intergenic | 40.0% | |
| ATTTCAGCTAAACGATGTGG+AGG | - | chr1_4:48427629-48427648 | None:intergenic | 40.0% | |
| AATAGCTTCAAAGGCAGATG+AGG | - | chr1_4:48427720-48427739 | None:intergenic | 40.0% | |
| GGAATGCTCAATAGCTTCAA+AGG | - | chr1_4:48427729-48427748 | None:intergenic | 40.0% | |
| !! | GCGGTAGTATTGATGCATAT+GGG | + | chr1_4:48427903-48427922 | Msa0166830:exon | 40.0% |
| ATATGCATGTGTTGTCAGCT+GGG | - | chr1_4:48428042-48428061 | None:intergenic | 40.0% | |
| AATATGCATGTGTTGTCAGC+TGG | - | chr1_4:48428043-48428062 | None:intergenic | 40.0% | |
| ! | AGAATCGAGTGGCATTTTAC+AGG | - | chr1_4:48428168-48428187 | None:intergenic | 40.0% |
| CTTGTTGAGGATGCAAAGGA+AGG | - | chr1_4:48423810-48423829 | None:intergenic | 45.0% | |
| GGAGAGAGAATACGGAAGTA+AGG | - | chr1_4:48423876-48423895 | None:intergenic | 45.0% | |
| ATCTCGAGGGAGAGAGAATA+CGG | - | chr1_4:48423884-48423903 | None:intergenic | 45.0% | |
| TGTGCTTCCTCTTCAACTGT+CGG | + | chr1_4:48423905-48423924 | Msa0166830:five_prime_UTR | 45.0% | |
| CGGTGGCGTAAAAGAGAAAA+GGG | - | chr1_4:48423938-48423957 | None:intergenic | 45.0% | |
| ACGGTGGCGTAAAAGAGAAA+AGG | - | chr1_4:48423939-48423958 | None:intergenic | 45.0% | |
| CAGGCTAATGGCTTCTGAAT+CGG | + | chr1_4:48424218-48424237 | Msa0166830:CDS | 45.0% | |
| TGAATCGGAAACTGTCACTG+TGG | + | chr1_4:48424233-48424252 | Msa0166830:CDS | 45.0% | |
| ! | TTGTTTGGGGTCTCAATTGG+TGG | - | chr1_4:48424894-48424913 | None:intergenic | 45.0% |
| ! | TCGCAGTGGGAATCTTGTTT+GGG | - | chr1_4:48424908-48424927 | None:intergenic | 45.0% |
| TTCGCAGTGGGAATCTTGTT+TGG | - | chr1_4:48424909-48424928 | None:intergenic | 45.0% | |
| AGAATCCTCTCATTCAGAGG+TGG | - | chr1_4:48424945-48424964 | None:intergenic | 45.0% | |
| CCTATCTCAAGATCATGCCA+TGG | - | chr1_4:48425002-48425021 | None:intergenic | 45.0% | |
| CCATGGCATGATCTTGAGAT+AGG | + | chr1_4:48424999-48425018 | Msa0166830:CDS | 45.0% | |
| TTGAAGATCTTGGGAGCTTC+AGG | - | chr1_4:48425160-48425179 | None:intergenic | 45.0% | |
| TCAACACGCATCCATTCAAC+AGG | - | chr1_4:48425646-48425665 | None:intergenic | 45.0% | |
| GGGTTAAGCGTTAAGCATGT+TGG | + | chr1_4:48425723-48425742 | Msa0166830:intron | 45.0% | |
| GCATGCTTAGGAACAGCAAA+TGG | - | chr1_4:48426069-48426088 | None:intergenic | 45.0% | |
| CAACTGATGAGTAAAGGACC+CGG | - | chr1_4:48426111-48426130 | None:intergenic | 45.0% | |
| GGGATAAACCCATAGTTGTG+AGG | - | chr1_4:48426139-48426158 | None:intergenic | 45.0% | |
| ACCATCCTCACAAATAGTGC+GGG | - | chr1_4:48426161-48426180 | None:intergenic | 45.0% | |
| CACCATCCTCACAAATAGTG+CGG | - | chr1_4:48426162-48426181 | None:intergenic | 45.0% | |
| TACTTCTGAGCTATGAAGCC+CGG | + | chr1_4:48426587-48426606 | Msa0166830:intron | 45.0% | |
| TATCCGATACGTATCCGACA+CGG | - | chr1_4:48426635-48426654 | None:intergenic | 45.0% | |
| !! | TACTTCTGGGATACGTATCC+GGG | - | chr1_4:48426677-48426696 | None:intergenic | 45.0% |
| GGATACGTTAAGGATACTCC+CGG | + | chr1_4:48426747-48426766 | Msa0166830:intron | 45.0% | |
| !! | TACTTCTGGGATACGTATCC+GGG | - | chr1_4:48426677-48426696 | None:intergenic | 45.0% |
| ATACGGGTACGATACGATAC+GGG | - | chr1_4:48427129-48427148 | None:intergenic | 45.0% | |
| GATACGGGTACGATACGATA+CGG | - | chr1_4:48427130-48427149 | None:intergenic | 45.0% | |
| AGAAAACAGCCAGGAAGAAC+TGG | - | chr1_4:48427404-48427423 | None:intergenic | 45.0% | |
| AGGCATGAGACCAATAGCTT+TGG | - | chr1_4:48427432-48427451 | None:intergenic | 45.0% | |
| GAAACATTCCCTTTCCCAGA+TGG | + | chr1_4:48427470-48427489 | Msa0166830:intron | 45.0% | |
| ! | GTGCTGATGATCCTGAGTAT+AGG | + | chr1_4:48427579-48427598 | Msa0166830:CDS | 45.0% |
| CGGATTTCAGCTAAACGATG+TGG | - | chr1_4:48427632-48427651 | None:intergenic | 45.0% | |
| CACAACGTAGTCTGCATACA+AGG | - | chr1_4:48427872-48427891 | None:intergenic | 45.0% | |
| CTTGTATGCAGACTACGTTG+TGG | + | chr1_4:48427870-48427889 | Msa0166830:CDS | 45.0% | |
| ACTACGTTGTGGAGAGTTTG+AGG | + | chr1_4:48427881-48427900 | Msa0166830:CDS | 45.0% | |
| !! | GGCGGTAGTATTGATGCATA+TGG | + | chr1_4:48427902-48427921 | Msa0166830:exon | 45.0% |
| GATGAGAGGAAAGAATCGAG+TGG | - | chr1_4:48428179-48428198 | None:intergenic | 45.0% | |
| !! | TAAAAAAAAAAAAAAAAAAC+TGG | - | chr1_4:48424478-48424497 | None:intergenic | 5.0% |
| !! | AAAAATTAAATTAAATCATT+CGG | - | chr1_4:48426701-48426720 | None:intergenic | 5.0% |
| !! | ATAAATTAAATTAAATCATT+CGG | - | chr1_4:48426792-48426811 | None:intergenic | 5.0% |
| GGATGCAAAGGAAGGGAAAG+AGG | - | chr1_4:48423802-48423821 | None:intergenic | 50.0% | |
| ! | AGAGGAAGCACAGATCTCGA+GGG | - | chr1_4:48423897-48423916 | None:intergenic | 50.0% |
| ! | AAGAGGAAGCACAGATCTCG+AGG | - | chr1_4:48423898-48423917 | None:intergenic | 50.0% |
| ! | AAACGCACCGACAGTTGAAG+AGG | - | chr1_4:48423915-48423934 | None:intergenic | 50.0% |
| TCGGAAACTGTCACTGTGGT+TGG | + | chr1_4:48424237-48424256 | Msa0166830:intron | 50.0% | |
| ! | CGCAGTGGGAATCTTGTTTG+GGG | - | chr1_4:48424907-48424926 | None:intergenic | 50.0% |
| GGTGAGGTGTAATTCGCAGT+GGG | - | chr1_4:48424921-48424940 | None:intergenic | 50.0% | |
| AGGTGAGGTGTAATTCGCAG+TGG | - | chr1_4:48424922-48424941 | None:intergenic | 50.0% | |
| ATCCTCTCATTCAGAGGTGG+AGG | - | chr1_4:48424942-48424961 | None:intergenic | 50.0% | |
| GGAACCGTCCAAGTTGTGAT+TGG | - | chr1_4:48425824-48425843 | None:intergenic | 50.0% | |
| TATCCCCCGCACTATTTGTG+AGG | + | chr1_4:48426153-48426172 | Msa0166830:CDS | 50.0% | |
| CATCCTCACAAATAGTGCGG+GGG | - | chr1_4:48426159-48426178 | None:intergenic | 50.0% | |
| CCATCCTCACAAATAGTGCG+GGG | - | chr1_4:48426160-48426179 | None:intergenic | 50.0% | |
| TGGTGACCCCATTGATGTCT+TGG | + | chr1_4:48426177-48426196 | Msa0166830:CDS | 50.0% | |
| GAAGCCCGGATACTCCAAAA+TGG | + | chr1_4:48426601-48426620 | Msa0166830:intron | 50.0% | |
| !!! | GGCACCATTTTGGAGTATCC+GGG | - | chr1_4:48426608-48426627 | None:intergenic | 50.0% |
| !!! | CGGCACCATTTTGGAGTATC+CGG | - | chr1_4:48426609-48426628 | None:intergenic | 50.0% |
| ATACGTATCCGACACGGGTA+CGG | - | chr1_4:48426629-48426648 | None:intergenic | 50.0% | |
| TACCCGTGTCGGATACGTAT+CGG | + | chr1_4:48426629-48426648 | Msa0166830:intron | 50.0% | |
| ATCCGATACGTATCCGACAC+GGG | - | chr1_4:48426634-48426653 | None:intergenic | 50.0% | |
| TATCGGATACCGATACTCCG+CGG | + | chr1_4:48426646-48426665 | Msa0166830:intron | 50.0% | |
| ACCCGTATCCGTATCCGTAT+CGG | + | chr1_4:48427141-48427160 | Msa0166830:intron | 50.0% | |
| ATGAAGCCCCGATACGGATA+CGG | - | chr1_4:48427152-48427171 | None:intergenic | 50.0% | |
| GAAGCTATGAAGCCCCGATA+CGG | - | chr1_4:48427158-48427177 | None:intergenic | 50.0% | |
| TTGGCACGAAGAAAACAGCC+AGG | - | chr1_4:48427413-48427432 | None:intergenic | 50.0% | |
| CAAAGGCAGATGAGGAAGGA+AGG | - | chr1_4:48427712-48427731 | None:intergenic | 50.0% | |
| GCTTCAAAGGCAGATGAGGA+AGG | - | chr1_4:48427716-48427735 | None:intergenic | 50.0% | |
| ACGTTGTGGAGAGTTTGAGG+CGG | + | chr1_4:48427884-48427903 | Msa0166830:CDS | 50.0% | |
| CTCATTCAGAGGTGGAGGTG+AGG | - | chr1_4:48424937-48424956 | None:intergenic | 55.0% | |
| CACCTCCACCTCTGAATGAG+AGG | + | chr1_4:48424937-48424956 | Msa0166830:CDS | 55.0% | |
| GGTCTGTTGCTGCTCATCCA+TGG | + | chr1_4:48424982-48425001 | Msa0166830:CDS | 55.0% | |
| CCCCGCACTATTTGTGAGGA+TGG | + | chr1_4:48426157-48426176 | Msa0166830:CDS | 55.0% | |
| ! | ACACGGGTACGGCACCATTT+TGG | - | chr1_4:48426618-48426637 | None:intergenic | 55.0% |
| !! | AAATGGTGCCGTACCCGTGT+CGG | + | chr1_4:48426618-48426637 | Msa0166830:intron | 55.0% |
| !! | TACGTATCCGGGAGTATCCG+CGG | - | chr1_4:48426666-48426685 | None:intergenic | 55.0% |
| CCCGATACGGATACGGATAC+GGG | - | chr1_4:48427145-48427164 | None:intergenic | 55.0% | |
| CCCGTATCCGTATCCGTATC+GGG | + | chr1_4:48427142-48427161 | Msa0166830:intron | 55.0% | |
| CCCCGATACGGATACGGATA+CGG | - | chr1_4:48427146-48427165 | None:intergenic | 55.0% | |
| CCGTATCCGTATCCGTATCG+GGG | + | chr1_4:48427143-48427162 | Msa0166830:intron | 55.0% | |
| CAACAGGAGCCAGTTCTTCC+TGG | + | chr1_4:48427392-48427411 | Msa0166830:intron | 55.0% | |
| !! | CGGGAGTATCCGCGGAGTAT+CGG | - | chr1_4:48426658-48426677 | None:intergenic | 60.0% |
| CGATACTCCGCGGATACTCC+CGG | + | chr1_4:48426656-48426675 | Msa0166830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 48423723 | 48428245 | 48423723 | ID=Msa0166830;Name=Msa0166830 |
| chr1_4 | mRNA | 48423723 | 48428245 | 48423723 | ID=Msa0166830-mRNA-1;Parent=Msa0166830;Name=Msa0166830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=213|1|1|1|0.88|0.8|10|336|252 |
| chr1_4 | exon | 48423723 | 48423926 | 48423723 | ID=Msa0166830-mRNA-1:exon:14072;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48424204 | 48424254 | 48424204 | ID=Msa0166830-mRNA-1:exon:14073;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48424342 | 48424398 | 48424342 | ID=Msa0166830-mRNA-1:exon:14074;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48424876 | 48425020 | 48424876 | ID=Msa0166830-mRNA-1:exon:14075;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48425155 | 48425183 | 48425155 | ID=Msa0166830-mRNA-1:exon:14076;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48425954 | 48426019 | 48425954 | ID=Msa0166830-mRNA-1:exon:14077;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48426103 | 48426210 | 48426103 | ID=Msa0166830-mRNA-1:exon:14078;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48427398 | 48427463 | 48427398 | ID=Msa0166830-mRNA-1:exon:14079;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48427548 | 48427750 | 48427548 | ID=Msa0166830-mRNA-1:exon:14080;Parent=Msa0166830-mRNA-1 |
| chr1_4 | exon | 48427867 | 48428245 | 48427867 | ID=Msa0166830-mRNA-1:exon:14081;Parent=Msa0166830-mRNA-1 |
| chr1_4 | five_prime_UTR | 48423723 | 48423926 | 48423723 | ID=Msa0166830-mRNA-1:five_prime_utr;Parent=Msa0166830-mRNA-1 |
| chr1_4 | five_prime_UTR | 48424204 | 48424212 | 48424204 | ID=Msa0166830-mRNA-1:five_prime_utr;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48424213 | 48424254 | 48424213 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48424342 | 48424398 | 48424342 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48424876 | 48425020 | 48424876 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48425155 | 48425183 | 48425155 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48425954 | 48426019 | 48425954 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48426103 | 48426210 | 48426103 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48427398 | 48427463 | 48427398 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48427548 | 48427750 | 48427548 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | CDS | 48427867 | 48427909 | 48427867 | ID=Msa0166830-mRNA-1:cds;Parent=Msa0166830-mRNA-1 |
| chr1_4 | three_prime_UTR | 48427910 | 48428245 | 48427910 | ID=Msa0166830-mRNA-1:three_prime_utr;Parent=Msa0166830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
