Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175950 | sp|Q1S9I9|H2B1_MEDTR | 87.162 | 148 | 8 | 3 | 197 | 333 | 1 | 148 | 7.46e-73 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175950 | I3S6Z4 | 100.000 | 137 | 0 | 0 | 197 | 333 | 1 | 137 | 7.34e-90 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175950 | Msa0698730 | 0.804629 | 1.971254e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175950 | MtrunA17_Chr1g0198251 | 100.000 | 137 | 0 | 0 | 197 | 333 | 1 | 137 | 1.41e-93 | 274 |
| Msa0175950 | MtrunA17_Chr1g0197451 | 99.270 | 137 | 1 | 0 | 197 | 333 | 1 | 137 | 6.03e-93 | 273 |
| Msa0175950 | MtrunA17_Chr4g0030981 | 86.395 | 147 | 10 | 3 | 197 | 333 | 1 | 147 | 5.79e-79 | 237 |
| Msa0175950 | MtrunA17_Chr4g0031671 | 87.162 | 148 | 8 | 3 | 197 | 333 | 1 | 148 | 8.37e-75 | 227 |
| Msa0175950 | MtrunA17_Chr4g0031631 | 87.162 | 148 | 8 | 3 | 197 | 333 | 1 | 148 | 8.37e-75 | 227 |
| Msa0175950 | MtrunA17_Chr4g0030941 | 87.162 | 148 | 8 | 3 | 197 | 333 | 1 | 148 | 8.37e-75 | 227 |
| Msa0175950 | MtrunA17_Chr4g0031061 | 86.486 | 148 | 9 | 3 | 197 | 333 | 1 | 148 | 4.62e-74 | 225 |
| Msa0175950 | MtrunA17_Chr4g0032321 | 86.486 | 148 | 9 | 3 | 197 | 333 | 1 | 148 | 4.62e-74 | 225 |
| Msa0175950 | MtrunA17_Chr4g0035061 | 87.162 | 148 | 8 | 3 | 197 | 333 | 1 | 148 | 5.49e-74 | 225 |
| Msa0175950 | MtrunA17_Chr4g0035631 | 87.162 | 148 | 8 | 3 | 197 | 333 | 1 | 148 | 5.49e-74 | 225 |
| Msa0175950 | MtrunA17_Chr4g0046191 | 89.510 | 143 | 9 | 3 | 197 | 333 | 1 | 143 | 1.38e-73 | 223 |
| Msa0175950 | MtrunA17_Chr4g0035071 | 85.811 | 148 | 10 | 3 | 197 | 333 | 1 | 148 | 3.00e-72 | 220 |
| Msa0175950 | MtrunA17_Chr4g0030951 | 86.806 | 144 | 8 | 3 | 201 | 333 | 4 | 147 | 9.20e-72 | 219 |
| Msa0175950 | MtrunA17_Chr7g0263031 | 95.413 | 109 | 4 | 1 | 225 | 333 | 31 | 138 | 2.77e-61 | 192 |
| Msa0175950 | MtrunA17_Chr1g0197471 | 75.839 | 149 | 28 | 4 | 1 | 149 | 1 | 141 | 9.86e-61 | 195 |
| Msa0175950 | MtrunA17_Chr1g0182361 | 98.913 | 92 | 1 | 0 | 242 | 333 | 45 | 136 | 3.89e-60 | 189 |
| Msa0175950 | MtrunA17_Chr8g0368781 | 69.663 | 89 | 24 | 1 | 204 | 292 | 3 | 88 | 1.16e-34 | 122 |
| Msa0175950 | MtrunA17_Chr2g0320511 | 61.798 | 89 | 34 | 0 | 244 | 332 | 136 | 224 | 1.19e-34 | 126 |
| Msa0175950 | MtrunA17_Chr4g0031051 | 90.196 | 51 | 5 | 0 | 271 | 321 | 1 | 51 | 3.79e-25 | 95.9 |
| Msa0175950 | MtrunA17_Chr7g0228831 | 87.273 | 55 | 6 | 1 | 228 | 281 | 27 | 81 | 6.63e-20 | 83.2 |
| Msa0175950 | MtrunA17_Chr4g0034461 | 68.000 | 50 | 16 | 0 | 100 | 149 | 111 | 160 | 3.08e-13 | 69.3 |
| Msa0175950 | MtrunA17_Chr4g0014401 | 39.773 | 88 | 48 | 1 | 235 | 317 | 23 | 110 | 3.42e-12 | 63.2 |
| Msa0175950 | MtrunA17_Chr4g0075141 | 38.095 | 84 | 49 | 2 | 249 | 330 | 34 | 116 | 2.50e-11 | 60.5 |
| Msa0175950 | MtrunA17_Chr4g0034441 | 62.000 | 50 | 19 | 0 | 100 | 149 | 112 | 161 | 5.00e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175950 | AT2G37470.1 | 88.406 | 138 | 14 | 2 | 197 | 332 | 1 | 138 | 1.85e-72 | 221 |
| Msa0175950 | AT3G45980.1 | 83.333 | 150 | 12 | 3 | 197 | 333 | 1 | 150 | 6.62e-72 | 220 |
| Msa0175950 | AT2G28720.1 | 82.119 | 151 | 13 | 2 | 197 | 333 | 1 | 151 | 9.91e-72 | 219 |
| Msa0175950 | AT1G07790.1 | 83.333 | 150 | 10 | 4 | 197 | 333 | 1 | 148 | 6.02e-69 | 212 |
| Msa0175950 | AT3G53650.1 | 86.331 | 139 | 16 | 3 | 197 | 333 | 1 | 138 | 6.27e-69 | 212 |
| Msa0175950 | AT5G59910.1 | 87.313 | 134 | 15 | 2 | 202 | 333 | 17 | 150 | 4.34e-67 | 207 |
| Msa0175950 | AT3G46030.1 | 89.147 | 129 | 12 | 2 | 207 | 333 | 17 | 145 | 1.28e-66 | 206 |
| Msa0175950 | AT5G02570.1 | 84.173 | 139 | 13 | 2 | 197 | 333 | 1 | 132 | 1.06e-63 | 198 |
| Msa0175950 | AT5G22880.1 | 80.282 | 142 | 14 | 2 | 206 | 333 | 4 | 145 | 1.80e-63 | 198 |
| Msa0175950 | AT3G09480.1 | 79.562 | 137 | 17 | 2 | 197 | 333 | 1 | 126 | 1.57e-59 | 187 |
| Msa0175950 | AT1G08170.1 | 56.989 | 93 | 40 | 0 | 238 | 330 | 143 | 235 | 1.18e-35 | 130 |
Find 69 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCTCCTAATAACAAAAT+TGG | 0.161907 | 1_4:+62116295 | Msa0175950:CDS |
| TATTCAAGAGCTAGTGAATT+TGG | 0.197215 | 1_4:-62120633 | None:intergenic |
| CGAGCAAGCCCAGAAGTTTC+TGG | 0.245023 | 1_4:-62117881 | None:intergenic |
| GTGCAAGTTCCAGAAACTTC+TGG | 0.255171 | 1_4:+62117872 | Msa0175950:CDS |
| GCTGTTCGTCTTGTTCTTCC+TGG | 0.277831 | 1_4:+62120566 | Msa0175950:CDS |
| CTTGAAGATGTAGATCTTGT+AGG | 0.279657 | 1_4:-62120384 | None:intergenic |
| TCGGTTGAGGATGCTTCCTT+TGG | 0.289986 | 1_4:-62120326 | None:intergenic |
| ACAGGGGAGGTGATCCGATT+TGG | 0.294906 | 1_4:+62116146 | Msa0175950:CDS |
| GATAGTGACTGCAACCAAAA+AGG | 0.295977 | 1_4:+62116237 | Msa0175950:CDS |
| GTTTCTCTTCTTCTTCTTGT+CGG | 0.325136 | 1_4:-62120345 | None:intergenic |
| AACTTCTGGGCTTGCTCGCT+TGG | 0.327318 | 1_4:+62117886 | Msa0175950:CDS |
| GCAGGTTTCTTCTCTCCCTT+TGG | 0.338176 | 1_4:-62120245 | None:intergenic |
| TGGGATCTTCTTCTCCGCTT+TGG | 0.356795 | 1_4:-62120306 | None:intergenic |
| TGCTTATTTCCTTCGACAAT+AGG | 0.359804 | 1_4:-62116388 | None:intergenic |
| CAGGGGAGGTGATCCGATTT+GGG | 0.371480 | 1_4:+62116147 | Msa0175950:CDS |
| CTTGCTCGCTTGGAGCTCGC+TGG | 0.378440 | 1_4:+62117896 | Msa0175950:CDS |
| CTTCTTCTTCTTGTCGGTTG+AGG | 0.378677 | 1_4:-62120339 | None:intergenic |
| CTTGTTGTATCGAGCAAGTC+TGG | 0.381987 | 1_4:-62120510 | None:intergenic |
| CGGTTGAGGATGCTTCCTTT+GGG | 0.395504 | 1_4:-62120325 | None:intergenic |
| TCTGCTGGTGCCTTCTCTGC+GGG | 0.397953 | 1_4:-62120278 | None:intergenic |
| TGGTATCTCAAGCAAGGCTA+TGG | 0.409396 | 1_4:+62120433 | Msa0175950:CDS |
| AACAACGACGTTGACAACTA+TGG | 0.412076 | 1_4:+62116090 | Msa0175950:CDS |
| CGAAGGAAATAAGCAATTTG+AGG | 0.417191 | 1_4:+62116396 | Msa0175950:CDS |
| AGTGAATTTGGTGACAGCTT+TGG | 0.420989 | 1_4:-62120621 | None:intergenic |
| TCTGCGGGCTTCTTCTCAGC+AGG | 0.422937 | 1_4:-62120263 | None:intergenic |
| TGCAAGTTCCAGAAACTTCT+GGG | 0.423661 | 1_4:+62117873 | Msa0175950:CDS |
| CTACAAGATCTACATCTTCA+AGG | 0.431521 | 1_4:+62120385 | Msa0175950:CDS |
| CCTCCATGTGGAACCCAAAT+CGG | 0.435821 | 1_4:-62116160 | None:intergenic |
| AATCTCCTAATAACAAAATT+GGG | 0.437760 | 1_4:+62116296 | Msa0175950:CDS |
| TCCCTCGGAGACAGCGTGCT+TGG | 0.447024 | 1_4:-62120597 | None:intergenic |
| ACCATCCATGGGAGATAAAT+CGG | 0.448358 | 1_4:+62115964 | None:intergenic |
| GACTGTTCGAATTGCTTATC+AGG | 0.458674 | 1_4:+62116264 | Msa0175950:CDS |
| CATCTTCAAGGTTCTCAAGC+AGG | 0.470454 | 1_4:+62120397 | Msa0175950:CDS |
| GCGTGCTTGGCGAGTTCACC+AGG | 0.485011 | 1_4:-62120584 | None:intergenic |
| GGTGACAGCTTTGGTTCCCT+CGG | 0.503972 | 1_4:-62120612 | None:intergenic |
| TCAATCAACAATGGCACCAA+AGG | 0.515027 | 1_4:+62120229 | Msa0175950:CDS |
| TGAGGATTCAAGTTCTTCAA+AGG | 0.515294 | 1_4:+62116198 | Msa0175950:CDS |
| AGTCACCGATTTATCTCCCA+TGG | 0.516173 | 1_4:-62115969 | None:intergenic |
| GGTATCTCAAGCAAGGCTAT+GGG | 0.517327 | 1_4:+62120434 | Msa0175950:CDS |
| AGGAGACAATCGAATTATTG+AGG | 0.519302 | 1_4:+62116180 | Msa0175950:CDS |
| CAAAGCTCTGTCAGATCAGA+TGG | 0.528034 | 1_4:+62116018 | Msa0175950:CDS |
| CTCTGCTGGTGCCTTCTCTG+CGG | 0.531286 | 1_4:-62120279 | None:intergenic |
| TCTCCACTTTAATCTCCTCT+AGG | 0.542612 | 1_4:-62116360 | None:intergenic |
| TTGCTTGAGATACCAATGTC+AGG | 0.545226 | 1_4:-62120425 | None:intergenic |
| TGAGAAGAAGCCCGCAGAGA+AGG | 0.546802 | 1_4:+62120268 | Msa0175950:CDS |
| TGTCAACGTCGTTGTTGTTG+TGG | 0.549219 | 1_4:-62116083 | None:intergenic |
| CAATCAACAATGGCACCAAA+GGG | 0.556792 | 1_4:+62120230 | Msa0175950:CDS |
| CTGAATCTCACGAGAAGTGA+TGG | 0.558881 | 1_4:-62120540 | None:intergenic |
| TATCTTTGAGAAGCTCGCTC+AGG | 0.560608 | 1_4:+62120481 | Msa0175950:CDS |
| GCTTGCTGCTCGCTTAAGCG+TGG | 0.563570 | 1_4:+62117925 | Msa0175950:CDS |
| GAGAATATTCCTATTGTCGA+AGG | 0.564702 | 1_4:+62116379 | Msa0175950:CDS |
| GCCAAGCACGCTGTCTCCGA+GGG | 0.566568 | 1_4:+62120596 | Msa0175950:CDS |
| GTACCTAGAGGAGATTAAAG+TGG | 0.572805 | 1_4:+62116357 | Msa0175950:CDS |
| CGCCAAGCACGCTGTCTCCG+AGG | 0.573257 | 1_4:+62120595 | Msa0175950:CDS |
| TATCTGAGTCATTGTTGTTG+TGG | 0.582266 | 1_4:-62116050 | None:intergenic |
| GATCCGATTTGGGTTCCACA+TGG | 0.593954 | 1_4:+62116157 | Msa0175950:CDS |
| TTCTTCAAAGGTAATAGAAG+AGG | 0.595711 | 1_4:+62116210 | Msa0175950:CDS |
| ACTTATTAACAATTATGATG+TGG | 0.597215 | 1_4:-62116336 | None:intergenic |
| AAGCAGGTTCATCCTGACAT+TGG | 0.605433 | 1_4:+62120413 | Msa0175950:CDS |
| TGACATTGGTATCTCAAGCA+AGG | 0.620719 | 1_4:+62120427 | Msa0175950:CDS |
| TGTCAGCTTTCAATCAACAA+TGG | 0.652054 | 1_4:+62120220 | Msa0175950:CDS |
| CCGATTTGGGTTCCACATGG+AGG | 0.657880 | 1_4:+62116160 | Msa0175950:CDS |
| ATTCGATTGTCTCCTCCATG+TGG | 0.660886 | 1_4:-62116172 | None:intergenic |
| GTATCTCAAGCAAGGCTATG+GGG | 0.662407 | 1_4:+62120435 | Msa0175950:CDS |
| ACCAGCAGAGAAAACCAAAG+CGG | 0.665379 | 1_4:+62120292 | Msa0175950:CDS |
| ATCTCACGAGAAGTGATGGT+AGG | 0.665630 | 1_4:-62120536 | None:intergenic |
| AGCGGAGAAGAAGATCCCAA+AGG | 0.675483 | 1_4:+62120310 | Msa0175950:CDS |
| AACAACAATGACTCAGATAG+CGG | 0.687504 | 1_4:+62116054 | Msa0175950:CDS |
| AATTGTTAATAAGTACCTAG+AGG | 0.710660 | 1_4:+62116345 | Msa0175950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAAAAAAATAATTTT+GGG | - | chr1_4:62119946-62119965 | None:intergenic | 0.0% |
| !!! | TTTAAAAAAAAAAATAATTT+TGG | - | chr1_4:62119947-62119966 | None:intergenic | 0.0% |
| !! | AAAATACTATGAAATTAATA+AGG | - | chr1_4:62119602-62119621 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAATAATTTTGG+GGG | - | chr1_4:62119944-62119963 | None:intergenic | 10.0% |
| !! | ATATATATACTTGTGATAAT+TGG | - | chr1_4:62116958-62116977 | None:intergenic | 15.0% |
| !!! | GTTTATATGATTTCTAAAAA+TGG | - | chr1_4:62117594-62117613 | None:intergenic | 15.0% |
| !! | GTACATAATTATGAAAAATA+TGG | + | chr1_4:62119340-62119359 | Msa0175950:intron | 15.0% |
| !!! | TTTTTTCAGTTTGTTATTTT+CGG | + | chr1_4:62119654-62119673 | Msa0175950:intron | 15.0% |
| !!! | TTTATTTTTATAAATGGAGA+AGG | - | chr1_4:62119789-62119808 | None:intergenic | 15.0% |
| !! | TCTCCATTTATAAAAATAAA+TGG | + | chr1_4:62119789-62119808 | Msa0175950:intron | 15.0% |
| !!! | GTTTTTTTTTTAAAGTTTAG+GGG | - | chr1_4:62119980-62119999 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAAAGTTTA+GGG | - | chr1_4:62119981-62120000 | None:intergenic | 15.0% |
| !!! | TCGTTTTTTTTTTAAAGTTT+AGG | - | chr1_4:62119982-62120001 | None:intergenic | 15.0% |
| !! | AATCTCCTAATAACAAAATT+GGG | + | chr1_4:62116296-62116315 | Msa0175950:CDS | 20.0% |
| !! | ACTTATTAACAATTATGATG+TGG | - | chr1_4:62116339-62116358 | None:intergenic | 20.0% |
| !! | TTATCGCTTAAATAGAAATA+GGG | - | chr1_4:62116452-62116471 | None:intergenic | 20.0% |
| !! | TTTATCGCTTAAATAGAAAT+AGG | - | chr1_4:62116453-62116472 | None:intergenic | 20.0% |
| !!! | TTGAACATAACTTTTGAAAA+TGG | - | chr1_4:62117686-62117705 | None:intergenic | 20.0% |
| !!! | GCTTTCTAAAATATTTCTTT+TGG | - | chr1_4:62117783-62117802 | None:intergenic | 20.0% |
| !! | TTGAATTTGTATGTCAAAAT+GGG | - | chr1_4:62118355-62118374 | None:intergenic | 20.0% |
| !!! | TTAAGTGGTTAATTTGATTT+TGG | - | chr1_4:62118450-62118469 | None:intergenic | 20.0% |
| !! | ACGGTAAAATGTAATAATAA+CGG | + | chr1_4:62118824-62118843 | Msa0175950:intron | 20.0% |
| !!! | TATTATTTTACTAAGTGCTA+GGG | - | chr1_4:62118883-62118902 | None:intergenic | 20.0% |
| !!! | TTATTATTTTACTAAGTGCT+AGG | - | chr1_4:62118884-62118903 | None:intergenic | 20.0% |
| !! | AGCACTTAGTAAAATAATAA+CGG | + | chr1_4:62118884-62118903 | Msa0175950:intron | 20.0% |
| !!! | GTAATTTAGTAATTTTGATG+AGG | - | chr1_4:62118933-62118952 | None:intergenic | 20.0% |
| !! | AATTAAATCAAGCGAAAAAT+CGG | + | chr1_4:62119099-62119118 | Msa0175950:intron | 20.0% |
| !!! | CTCTATTTTCAAACTTAAAT+AGG | - | chr1_4:62119702-62119721 | None:intergenic | 20.0% |
| !!! | CCTCCATTTATTTTTATAAA+TGG | - | chr1_4:62119795-62119814 | None:intergenic | 20.0% |
| !! | CCATTTATAAAAATAAATGG+AGG | + | chr1_4:62119792-62119811 | Msa0175950:intron | 20.0% |
| !! | GTTTATATAGAAATCGTTAA+TGG | - | chr1_4:62120114-62120133 | None:intergenic | 20.0% |
| ! | ATAACAAAAACAATCAGAAC+AGG | + | chr1_4:62116128-62116147 | Msa0175950:CDS | 25.0% |
| ! | TAACAAAAACAATCAGAACA+GGG | + | chr1_4:62116129-62116148 | Msa0175950:CDS | 25.0% |
| ! | CAATCTCCTAATAACAAAAT+TGG | + | chr1_4:62116295-62116314 | Msa0175950:CDS | 25.0% |
| !!! | GTAATCCCAATTTTGTTATT+AGG | - | chr1_4:62116304-62116323 | None:intergenic | 25.0% |
| ! | AATTGTTAATAAGTACCTAG+AGG | + | chr1_4:62116345-62116364 | Msa0175950:CDS | 25.0% |
| !!! | TTTATACATGCATGTTGTTT+TGG | - | chr1_4:62116527-62116546 | None:intergenic | 25.0% |
| !! | ATACCATGGAATGTATATTT+TGG | - | chr1_4:62116588-62116607 | None:intergenic | 25.0% |
| ! | CACAAAAACATCATTATCAA+CGG | + | chr1_4:62117111-62117130 | Msa0175950:intron | 25.0% |
| ! | AATTCAACGACTATAATCAA+TGG | + | chr1_4:62117225-62117244 | Msa0175950:intron | 25.0% |
| ! | ATCACTTTATAAATCTTTCG+TGG | - | chr1_4:62117295-62117314 | None:intergenic | 25.0% |
| ! | CGAAAGATTTATAAAGTGAT+CGG | + | chr1_4:62117295-62117314 | Msa0175950:intron | 25.0% |
| !!! | GCTTCAGTTATTTTGAAAAT+GGG | - | chr1_4:62117361-62117380 | None:intergenic | 25.0% |
| !!! | AGCTTCAGTTATTTTGAAAA+TGG | - | chr1_4:62117362-62117381 | None:intergenic | 25.0% |
| !! | ATTTTGTGATTCTCATGAAT+TGG | - | chr1_4:62117493-62117512 | None:intergenic | 25.0% |
| !!! | AACTTGTTTTGCTTTGAAAA+TGG | - | chr1_4:62117547-62117566 | None:intergenic | 25.0% |
| !! | TTTCTAAAAATGGTTGTGAT+TGG | - | chr1_4:62117584-62117603 | None:intergenic | 25.0% |
| !!! | CTTAACCATACTTTATTTTC+CGG | + | chr1_4:62117624-62117643 | Msa0175950:intron | 25.0% |
| ! | AGGTTTAAGTGTATAAATAG+AGG | + | chr1_4:62117748-62117767 | Msa0175950:intron | 25.0% |
| !!! | AAGAAATATTTTAGAAAGCC+TGG | + | chr1_4:62117784-62117803 | Msa0175950:intron | 25.0% |
| !!! | TTGGGATTTTTAGTGAAAAA+GGG | - | chr1_4:62118007-62118026 | None:intergenic | 25.0% |
| !!! | ATTGGGATTTTTAGTGAAAA+AGG | - | chr1_4:62118008-62118027 | None:intergenic | 25.0% |
| !! | GAGTAGTTTTTATGTGAAAT+TGG | - | chr1_4:62118319-62118338 | None:intergenic | 25.0% |
| ! | GTTGAATTTGTATGTCAAAA+TGG | - | chr1_4:62118356-62118375 | None:intergenic | 25.0% |
| ! | TTAGTGAAGAATTAAGGTAA+GGG | - | chr1_4:62118542-62118561 | None:intergenic | 25.0% |
| !! | TTTGAGTTAGTGAAGAATTA+AGG | - | chr1_4:62118548-62118567 | None:intergenic | 25.0% |
| ! | ATTCTTCACTAACTCAAATT+AGG | + | chr1_4:62118550-62118569 | Msa0175950:intron | 25.0% |
| ! | TTCTTCACTAACTCAAATTA+GGG | + | chr1_4:62118551-62118570 | Msa0175950:intron | 25.0% |
| ! | TCTAACACTAGAGTTTATAT+AGG | + | chr1_4:62118717-62118736 | Msa0175950:intron | 25.0% |
| ! | TTATATAGGCTCTACATAAT+TGG | + | chr1_4:62118731-62118750 | Msa0175950:intron | 25.0% |
| ! | TATATAGGCTCTACATAATT+GGG | + | chr1_4:62118732-62118751 | Msa0175950:intron | 25.0% |
| !! | TTTGAATTGGTTTAGTGAAT+GGG | - | chr1_4:62118787-62118806 | None:intergenic | 25.0% |
| !!! | TTTTGAATTGGTTTAGTGAA+TGG | - | chr1_4:62118788-62118807 | None:intergenic | 25.0% |
| !! | ATTACATTTTACCGTTAAGT+GGG | - | chr1_4:62118819-62118838 | None:intergenic | 25.0% |
| !! | TATTACATTTTACCGTTAAG+TGG | - | chr1_4:62118820-62118839 | None:intergenic | 25.0% |
| ! | TGTAGTGAATTGTTTATAAC+CGG | - | chr1_4:62118857-62118876 | None:intergenic | 25.0% |
| !!! | TTTTAGTCATTTTGGACTAA+GGG | - | chr1_4:62118982-62119001 | None:intergenic | 25.0% |
| !!! | ATTTTAGTCATTTTGGACTA+AGG | - | chr1_4:62118983-62119002 | None:intergenic | 25.0% |
| ! | ATTAAATCAAGCGAAAAATC+GGG | + | chr1_4:62119100-62119119 | Msa0175950:intron | 25.0% |
| !! | ATATTCTCTTTTGTGCTTAT+TGG | - | chr1_4:62119251-62119270 | None:intergenic | 25.0% |
| ! | ATATTTACCATGAATTATGG+AGG | - | chr1_4:62119278-62119297 | None:intergenic | 25.0% |
| ! | GCAATATTTACCATGAATTA+TGG | - | chr1_4:62119281-62119300 | None:intergenic | 25.0% |
| ! | ATATTTCTTCAATGGGATAA+AGG | + | chr1_4:62119407-62119426 | Msa0175950:intron | 25.0% |
| ! | AATGCAAAGATGATTTGATT+TGG | - | chr1_4:62119448-62119467 | None:intergenic | 25.0% |
| ! | GAAAATAACAAAACCCTAAT+TGG | - | chr1_4:62119680-62119699 | None:intergenic | 25.0% |
| AACAAAAACAATCAGAACAG+GGG | + | chr1_4:62116130-62116149 | Msa0175950:CDS | 30.0% | |
| TTCTTCAAAGGTAATAGAAG+AGG | + | chr1_4:62116210-62116229 | Msa0175950:CDS | 30.0% | |
| ! | CAATTTGAGGTTGTAAACAA+GGG | + | chr1_4:62116409-62116428 | Msa0175950:intron | 30.0% |
| TCTCCAAAATATACATTCCA+TGG | + | chr1_4:62116582-62116601 | Msa0175950:intron | 30.0% | |
| !!! | GTTGATGTATTTTGATACCA+TGG | - | chr1_4:62116602-62116621 | None:intergenic | 30.0% |
| TTGTTCTGTGAATGTGTATA+TGG | - | chr1_4:62116933-62116952 | None:intergenic | 30.0% | |
| CATCATCATTCTTCATACAA+CGG | + | chr1_4:62116993-62117012 | Msa0175950:intron | 30.0% | |
| AGTATAGGTGCATATTACAT+TGG | - | chr1_4:62117037-62117056 | None:intergenic | 30.0% | |
| !!! | CGTTGATAATGATGTTTTTG+TGG | - | chr1_4:62117113-62117132 | None:intergenic | 30.0% |
| AATTGTTGTGAACATATGCA+TGG | - | chr1_4:62117209-62117228 | None:intergenic | 30.0% | |
| AGTATACAATTACGTTTCAC+CGG | + | chr1_4:62117457-62117476 | Msa0175950:intron | 30.0% | |
| CGGAAAATAAAGTATGGTTA+AGG | - | chr1_4:62117626-62117645 | None:intergenic | 30.0% | |
| TTTCTCCGGAAAATAAAGTA+TGG | - | chr1_4:62117632-62117651 | None:intergenic | 30.0% | |
| ACTTAAACCTACTAGAACAT+CGG | - | chr1_4:62117738-62117757 | None:intergenic | 30.0% | |
| !! | ATATTTTAGAAAGCCTGGAT+TGG | + | chr1_4:62117789-62117808 | Msa0175950:intron | 30.0% |
| !! | AAAATCAAGTTTTGCTGTAC+AGG | + | chr1_4:62117832-62117851 | Msa0175950:intron | 30.0% |
| !!! | GATTTTTAGTGAAAAAGGGT+TGG | - | chr1_4:62118003-62118022 | None:intergenic | 30.0% |
| ! | GGTTTGGAATGATCAAAATT+GGG | - | chr1_4:62118025-62118044 | None:intergenic | 30.0% |
| TGTTGTTGAATTGATGCAAT+GGG | - | chr1_4:62118220-62118239 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGAATTGATGCAA+TGG | - | chr1_4:62118221-62118240 | None:intergenic | 30.0% |
| AATTGCTTATTGTGGTTAAG+TGG | - | chr1_4:62118465-62118484 | None:intergenic | 30.0% | |
| AAGCAATTATGCAAGGAAAT+AGG | + | chr1_4:62118477-62118496 | Msa0175950:intron | 30.0% | |
| AGCAATTATGCAAGGAAATA+GGG | + | chr1_4:62118478-62118497 | Msa0175950:intron | 30.0% | |
| TAGTGAAGAATTAAGGTAAG+GGG | - | chr1_4:62118541-62118560 | None:intergenic | 30.0% | |
| GTTAGTGAAGAATTAAGGTA+AGG | - | chr1_4:62118543-62118562 | None:intergenic | 30.0% | |
| !! | TTTCACAATTTTGAGAGAAG+AGG | - | chr1_4:62118675-62118694 | None:intergenic | 30.0% |
| CTCTAGTGTTAGAGAAAATA+GGG | - | chr1_4:62118710-62118729 | None:intergenic | 30.0% | |
| ACTCTAGTGTTAGAGAAAAT+AGG | - | chr1_4:62118711-62118730 | None:intergenic | 30.0% | |
| TCAAATCACAATGCCTTAAT+GGG | + | chr1_4:62118756-62118775 | Msa0175950:intron | 30.0% | |
| TAATAATAACGGTCACTTAC+CGG | + | chr1_4:62118835-62118854 | Msa0175950:intron | 30.0% | |
| !! | TTTTGGTCATTTTGTGAGTA+GGG | - | chr1_4:62118956-62118975 | None:intergenic | 30.0% |
| !! | ATTTTGGTCATTTTGTGAGT+AGG | - | chr1_4:62118957-62118976 | None:intergenic | 30.0% |
| !! | TTTAGTCATTTTGGACTAAG+GGG | - | chr1_4:62118981-62119000 | None:intergenic | 30.0% |
| !!! | GAAGGGTATTTTAGTCATTT+TGG | - | chr1_4:62118990-62119009 | None:intergenic | 30.0% |
| ! | TGGTTTGGAATTGTAGAATT+CGG | - | chr1_4:62119018-62119037 | None:intergenic | 30.0% |
| TATTACACCTCCATAATTCA+TGG | + | chr1_4:62119268-62119287 | Msa0175950:intron | 30.0% | |
| AAATATTGCCCACGATAAAA+CGG | + | chr1_4:62119292-62119311 | Msa0175950:intron | 30.0% | |
| ATGCTGCTATATTTCTTCAA+TGG | + | chr1_4:62119399-62119418 | Msa0175950:intron | 30.0% | |
| TGCTGCTATATTTCTTCAAT+GGG | + | chr1_4:62119400-62119419 | Msa0175950:intron | 30.0% | |
| !!! | TTTGTTATTTTCGGCCAATT+AGG | + | chr1_4:62119663-62119682 | Msa0175950:intron | 30.0% |
| !!! | TTGTTATTTTCGGCCAATTA+GGG | + | chr1_4:62119664-62119683 | Msa0175950:intron | 30.0% |
| ! | GAAGGTTATGAATCGAATTT+TGG | - | chr1_4:62119771-62119790 | None:intergenic | 30.0% |
| ! | TATCTGAGTCATTGTTGTTG+TGG | - | chr1_4:62116053-62116072 | None:intergenic | 35.0% |
| AACAACAATGACTCAGATAG+CGG | + | chr1_4:62116054-62116073 | Msa0175950:CDS | 35.0% | |
| AGGAGACAATCGAATTATTG+AGG | + | chr1_4:62116180-62116199 | Msa0175950:CDS | 35.0% | |
| ! | TGAGGATTCAAGTTCTTCAA+AGG | + | chr1_4:62116198-62116217 | Msa0175950:CDS | 35.0% |
| ATAGTGACTGCAACCAAAAA+GGG | + | chr1_4:62116238-62116257 | Msa0175950:CDS | 35.0% | |
| GAGAATATTCCTATTGTCGA+AGG | + | chr1_4:62116379-62116398 | Msa0175950:CDS | 35.0% | |
| TGCTTATTTCCTTCGACAAT+AGG | - | chr1_4:62116391-62116410 | None:intergenic | 35.0% | |
| CGAAGGAAATAAGCAATTTG+AGG | + | chr1_4:62116396-62116415 | Msa0175950:CDS | 35.0% | |
| ! | GCAATTTGAGGTTGTAAACA+AGG | + | chr1_4:62116408-62116427 | Msa0175950:intron | 35.0% |
| ATATACTCATCCATACAGAC+AGG | + | chr1_4:62116797-62116816 | Msa0175950:intron | 35.0% | |
| ! | TTGCTCATGTTGATTAGTGA+AGG | - | chr1_4:62116903-62116922 | None:intergenic | 35.0% |
| !! | TGATGTTTTTGTGGCATCAT+GGG | - | chr1_4:62117104-62117123 | None:intergenic | 35.0% |
| !! | ATGATGTTTTTGTGGCATCA+TGG | - | chr1_4:62117105-62117124 | None:intergenic | 35.0% |
| TTATCAACGGCTATAGTCAA+CGG | + | chr1_4:62117124-62117143 | Msa0175950:intron | 35.0% | |
| ! | TTATAAAGTGATCGGCTCAA+AGG | + | chr1_4:62117303-62117322 | Msa0175950:intron | 35.0% |
| TAGACGAAATTGGTTGGAAA+TGG | - | chr1_4:62117331-62117350 | None:intergenic | 35.0% | |
| TAACGATAGACGAAATTGGT+TGG | - | chr1_4:62117337-62117356 | None:intergenic | 35.0% | |
| !! | GGATCTTGTTTACTTGGTTT+TGG | - | chr1_4:62117391-62117410 | None:intergenic | 35.0% |
| CCTATAGGTATACTTAGTTG+AGG | - | chr1_4:62117418-62117437 | None:intergenic | 35.0% | |
| CCTCAACTAAGTATACCTAT+AGG | + | chr1_4:62117415-62117434 | Msa0175950:intron | 35.0% | |
| TGCACTTATATGTAGCCTAT+AGG | - | chr1_4:62117433-62117452 | None:intergenic | 35.0% | |
| !!! | TTCTGAAACTCGTTTTTCTC+CGG | - | chr1_4:62117646-62117665 | None:intergenic | 35.0% |
| CTTAAACCTACTAGAACATC+GGG | - | chr1_4:62117737-62117756 | None:intergenic | 35.0% | |
| ! | ATTTTTCGTTTCGTGCACTT+GGG | - | chr1_4:62117817-62117836 | None:intergenic | 35.0% |
| TCTGTCAAAAATCCAGTTAC+AGG | + | chr1_4:62117975-62117994 | Msa0175950:intron | 35.0% | |
| ! | GGGTTTGGAATGATCAAAAT+TGG | - | chr1_4:62118026-62118045 | None:intergenic | 35.0% |
| !!! | ATCTTTTGGGTTGAGTTTTG+GGG | - | chr1_4:62118046-62118065 | None:intergenic | 35.0% |
| !!! | CATCTTTTGGGTTGAGTTTT+GGG | - | chr1_4:62118047-62118066 | None:intergenic | 35.0% |
| !!! | ACATCTTTTGGGTTGAGTTT+TGG | - | chr1_4:62118048-62118067 | None:intergenic | 35.0% |
| TCAACCCAAAAGATGTTTAC+AGG | + | chr1_4:62118052-62118071 | Msa0175950:intron | 35.0% | |
| CAACCCAAAAGATGTTTACA+GGG | + | chr1_4:62118053-62118072 | Msa0175950:intron | 35.0% | |
| ! | TGACCCTGTAAACATCTTTT+GGG | - | chr1_4:62118059-62118078 | None:intergenic | 35.0% |
| ! | ATGACCCTGTAAACATCTTT+TGG | - | chr1_4:62118060-62118079 | None:intergenic | 35.0% |
| !! | ATTGGTGATGAATGAAGTTG+TGG | - | chr1_4:62118301-62118320 | None:intergenic | 35.0% |
| CCTTGCATAATTGCTTATTG+TGG | - | chr1_4:62118473-62118492 | None:intergenic | 35.0% | |
| CCACAATAAGCAATTATGCA+AGG | + | chr1_4:62118470-62118489 | Msa0175950:intron | 35.0% | |
| AGTGAAGAATTAAGGTAAGG+GGG | - | chr1_4:62118540-62118559 | None:intergenic | 35.0% | |
| CTCAAATCACAATGCCTTAA+TGG | + | chr1_4:62118755-62118774 | Msa0175950:intron | 35.0% | |
| ! | ATTGGTTTAGTGAATGGGTT+AGG | - | chr1_4:62118782-62118801 | None:intergenic | 35.0% |
| ! | TGGGTAGTGACATTTTGAAT+TGG | - | chr1_4:62118800-62118819 | None:intergenic | 35.0% |
| AAATGTCACTACCCACTTAA+CGG | + | chr1_4:62118805-62118824 | Msa0175950:intron | 35.0% | |
| !! | TTTGGTCATTTTGTGAGTAG+GGG | - | chr1_4:62118955-62118974 | None:intergenic | 35.0% |
| !!! | TTTTGGACTAAGGGGTATTT+TGG | - | chr1_4:62118973-62118992 | None:intergenic | 35.0% |
| !! | TGTAGAATTCGGTGTTAGAA+GGG | - | chr1_4:62119007-62119026 | None:intergenic | 35.0% |
| !! | TTGTAGAATTCGGTGTTAGA+AGG | - | chr1_4:62119008-62119027 | None:intergenic | 35.0% |
| ! | AATTGCCTCTGTGTGTATTT+TGG | - | chr1_4:62119038-62119057 | None:intergenic | 35.0% |
| TTGTTGATACAACTTGTGAG+TGG | + | chr1_4:62119200-62119219 | Msa0175950:intron | 35.0% | |
| ! | GTGAGTGGATTTCAAAAGTA+TGG | + | chr1_4:62119215-62119234 | Msa0175950:intron | 35.0% |
| TATGGCAGAGACTAAAATGA+TGG | + | chr1_4:62119358-62119377 | Msa0175950:intron | 35.0% | |
| TTCATTCAATGAGATCCAAG+AGG | + | chr1_4:62119467-62119486 | Msa0175950:intron | 35.0% | |
| TCATTCAATGAGATCCAAGA+GGG | + | chr1_4:62119468-62119487 | Msa0175950:intron | 35.0% | |
| TCTTTATGAGAACGAGAACT+CGG | + | chr1_4:62119532-62119551 | Msa0175950:intron | 35.0% | |
| !! | GAGCATGTTGGTTTAAGAAA+GGG | - | chr1_4:62119744-62119763 | None:intergenic | 35.0% |
| !! | AGAGCATGTTGGTTTAAGAA+AGG | - | chr1_4:62119745-62119764 | None:intergenic | 35.0% |
| !! | AATTTTGGTGTAGAGCATGT+TGG | - | chr1_4:62119756-62119775 | None:intergenic | 35.0% |
| ! | TTTTTGAACGTCAGAGTCTT+CGG | - | chr1_4:62120027-62120046 | None:intergenic | 35.0% |
| !!! | TTGGTTGGTTTTAGAATTCG+CGG | - | chr1_4:62120084-62120103 | None:intergenic | 35.0% |
| AATCGTTAATGGTCTCTGAT+TGG | - | chr1_4:62120103-62120122 | None:intergenic | 35.0% | |
| ! | TGAATTGTGATTTTGCGCTT+GGG | - | chr1_4:62120146-62120165 | None:intergenic | 35.0% |
| ! | TTGAATTGTGATTTTGCGCT+TGG | - | chr1_4:62120147-62120166 | None:intergenic | 35.0% |
| TGTCAGCTTTCAATCAACAA+TGG | + | chr1_4:62120220-62120239 | Msa0175950:CDS | 35.0% | |
| GTTTCTCTTCTTCTTCTTGT+CGG | - | chr1_4:62120348-62120367 | None:intergenic | 35.0% | |
| CTTGAAGATGTAGATCTTGT+AGG | - | chr1_4:62120387-62120406 | None:intergenic | 35.0% | |
| CTACAAGATCTACATCTTCA+AGG | + | chr1_4:62120385-62120404 | Msa0175950:CDS | 35.0% | |
| AACAACGACGTTGACAACTA+TGG | + | chr1_4:62116090-62116109 | Msa0175950:CDS | 40.0% | |
| AAAAACAATCAGAACAGGGG+AGG | + | chr1_4:62116133-62116152 | Msa0175950:CDS | 40.0% | |
| GATAGTGACTGCAACCAAAA+AGG | + | chr1_4:62116237-62116256 | Msa0175950:CDS | 40.0% | |
| GACTGTTCGAATTGCTTATC+AGG | + | chr1_4:62116264-62116283 | Msa0175950:CDS | 40.0% | |
| GTACCTAGAGGAGATTAAAG+TGG | + | chr1_4:62116357-62116376 | Msa0175950:CDS | 40.0% | |
| TCTCCACTTTAATCTCCTCT+AGG | - | chr1_4:62116363-62116382 | None:intergenic | 40.0% | |
| AAATATCTCAACAGTCGCAG+CGG | + | chr1_4:62116545-62116564 | Msa0175950:intron | 40.0% | |
| ! | TCGGTGTCTTATGTTGTTGT+TGG | - | chr1_4:62116679-62116698 | None:intergenic | 40.0% |
| ! | TTAGGCTCTGATTAGGTTGT+CGG | - | chr1_4:62116698-62116717 | None:intergenic | 40.0% |
| CTACGACTCCAAAACGATAA+CGG | + | chr1_4:62116720-62116739 | Msa0175950:intron | 40.0% | |
| !! | TCCAAAACGATAACGGAGAT+TGG | + | chr1_4:62116727-62116746 | Msa0175950:intron | 40.0% |
| TTTGGTGAGTGCTTAGATAG+CGG | - | chr1_4:62116756-62116775 | None:intergenic | 40.0% | |
| TGGATGAGTATATGTTGTGC+AGG | - | chr1_4:62116790-62116809 | None:intergenic | 40.0% | |
| TGTGATACCAAATCTCCTCA+AGG | + | chr1_4:62117072-62117091 | Msa0175950:intron | 40.0% | |
| TGTTGTGAACATATGCATGG+TGG | - | chr1_4:62117206-62117225 | None:intergenic | 40.0% | |
| GGGATAACGATAGACGAAAT+TGG | - | chr1_4:62117341-62117360 | None:intergenic | 40.0% | |
| ! | GGCATTGGATCTTGTTTACT+TGG | - | chr1_4:62117397-62117416 | None:intergenic | 40.0% |
| GGTATACTTAGTTGAGGCAT+TGG | - | chr1_4:62117412-62117431 | None:intergenic | 40.0% | |
| ATGAATTGGTCGTGTTTAGC+CGG | - | chr1_4:62117479-62117498 | None:intergenic | 40.0% | |
| ! | TTTTTCGTTTCGTGCACTTG+GGG | - | chr1_4:62117816-62117835 | None:intergenic | 40.0% |
| ! | GATTTTTCGTTTCGTGCACT+TGG | - | chr1_4:62117818-62117837 | None:intergenic | 40.0% |
| !! | ATCAAGTTTTGCTGTACAGG+AGG | + | chr1_4:62117835-62117854 | Msa0175950:intron | 40.0% |
| !! | TCAAGTTTTGCTGTACAGGA+GGG | + | chr1_4:62117836-62117855 | Msa0175950:intron | 40.0% |
| TGCAAGTTCCAGAAACTTCT+GGG | + | chr1_4:62117873-62117892 | Msa0175950:CDS | 40.0% | |
| ! | GATTTTTGACAGACTGAAGC+AGG | - | chr1_4:62117968-62117987 | None:intergenic | 40.0% |
| TGTGGAAAGTTGTGAGAGTT+TGG | - | chr1_4:62118157-62118176 | None:intergenic | 40.0% | |
| !! | TGACGAGTTTGTTGTTGTTG+TGG | - | chr1_4:62118175-62118194 | None:intergenic | 40.0% |
| AGAAGAGAAGGGTTTGAAGA+AGG | - | chr1_4:62118633-62118652 | None:intergenic | 40.0% | |
| AAGAGCAAGAGAGAAGAGAA+GGG | - | chr1_4:62118644-62118663 | None:intergenic | 40.0% | |
| AAAGAGCAAGAGAGAAGAGA+AGG | - | chr1_4:62118645-62118664 | None:intergenic | 40.0% | |
| !!! | CCTCTGTGTGTATTTTGGTT+TGG | - | chr1_4:62119033-62119052 | None:intergenic | 40.0% |
| CCAAACCAAAATACACACAG+AGG | + | chr1_4:62119030-62119049 | Msa0175950:intron | 40.0% | |
| GTACTTTCCAGCAAAAGACA+CGG | - | chr1_4:62119324-62119343 | None:intergenic | 40.0% | |
| ATGATTCCTCCCATGAACAA+GGG | - | chr1_4:62119498-62119517 | None:intergenic | 40.0% | |
| CTTTATGAGAACGAGAACTC+GGG | + | chr1_4:62119533-62119552 | Msa0175950:intron | 40.0% | |
| TTTATGAGAACGAGAACTCG+GGG | + | chr1_4:62119534-62119553 | Msa0175950:intron | 40.0% | |
| ! | GTCAAGTTCTTTAGAAGTGG+AGG | + | chr1_4:62119556-62119575 | Msa0175950:intron | 40.0% |
| TGGAGGAGATTGATGTAGTA+GGG | + | chr1_4:62119573-62119592 | Msa0175950:intron | 40.0% | |
| ! | TGACGTGGATGCTTCATTTT+GGG | - | chr1_4:62120056-62120075 | None:intergenic | 40.0% |
| ! | ATGACGTGGATGCTTCATTT+TGG | - | chr1_4:62120057-62120076 | None:intergenic | 40.0% |
| GTTAATGGTCTCTGATTGGT+TGG | - | chr1_4:62120099-62120118 | None:intergenic | 40.0% | |
| TCAATCAACAATGGCACCAA+AGG | + | chr1_4:62120229-62120248 | Msa0175950:CDS | 40.0% | |
| CAATCAACAATGGCACCAAA+GGG | + | chr1_4:62120230-62120249 | Msa0175950:CDS | 40.0% | |
| TTGCTTGAGATACCAATGTC+AGG | - | chr1_4:62120428-62120447 | None:intergenic | 40.0% | |
| TGACATTGGTATCTCAAGCA+AGG | + | chr1_4:62120427-62120446 | Msa0175950:CDS | 40.0% | |
| ! | AGTGAATTTGGTGACAGCTT+TGG | - | chr1_4:62120624-62120643 | None:intergenic | 40.0% |
| CAAAGCTCTGTCAGATCAGA+TGG | + | chr1_4:62116018-62116037 | Msa0175950:CDS | 45.0% | |
| ! | TGTCAACGTCGTTGTTGTTG+TGG | - | chr1_4:62116086-62116105 | None:intergenic | 45.0% |
| ATTCGATTGTCTCCTCCATG+TGG | - | chr1_4:62116175-62116194 | None:intergenic | 45.0% | |
| ATTCTCCAAGTCTCGACAAG+TGG | + | chr1_4:62116628-62116647 | Msa0175950:intron | 45.0% | |
| TTCTCCAAGTCTCGACAAGT+GGG | + | chr1_4:62116629-62116648 | Msa0175950:intron | 45.0% | |
| ! | TTTTCCCACTTGTCGAGACT+TGG | - | chr1_4:62116636-62116655 | None:intergenic | 45.0% |
| ! | CGTAGGTTTAGGCTCTGATT+AGG | - | chr1_4:62116705-62116724 | None:intergenic | 45.0% |
| !!! | CGTTTTGGAGTCGTAGGTTT+AGG | - | chr1_4:62116716-62116735 | None:intergenic | 45.0% |
| !!! | CGTTATCGTTTTGGAGTCGT+AGG | - | chr1_4:62116722-62116741 | None:intergenic | 45.0% |
| ! | GCCAATCTCCGTTATCGTTT+TGG | - | chr1_4:62116731-62116750 | None:intergenic | 45.0% |
| TTGGTGAGTGCTTAGATAGC+GGG | - | chr1_4:62116755-62116774 | None:intergenic | 45.0% | |
| ACTCATCCATACAGACAGGT+AGG | + | chr1_4:62116801-62116820 | Msa0175950:intron | 45.0% | |
| ACTGTAAAGCTAACCTCCAG+TGG | - | chr1_4:62116836-62116855 | None:intergenic | 45.0% | |
| TGCATGTATGCGTCGAGTAT+AGG | - | chr1_4:62117052-62117071 | None:intergenic | 45.0% | |
| GGCTATAGTCAACGGCAATA+TGG | + | chr1_4:62117132-62117151 | Msa0175950:intron | 45.0% | |
| GAACATCGGGTGAATCGAAT+TGG | - | chr1_4:62117724-62117743 | None:intergenic | 45.0% | |
| GATTCACCCGATGTTCTAGT+AGG | + | chr1_4:62117728-62117747 | Msa0175950:intron | 45.0% | |
| GTGCAAGTTCCAGAAACTTC+TGG | + | chr1_4:62117872-62117891 | Msa0175950:CDS | 45.0% | |
| AAAGGGTTGGAACCTGTAAC+TGG | - | chr1_4:62117990-62118009 | None:intergenic | 45.0% | |
| !!! | TTGGGTTGAGTTTTGGGGTT+TGG | - | chr1_4:62118041-62118060 | None:intergenic | 45.0% |
| ! | GTGAGAGTTTGGTGAATTCG+TGG | - | chr1_4:62118146-62118165 | None:intergenic | 45.0% |
| GAAGGTAGAGCTTCAAGGAT+TGG | - | chr1_4:62118590-62118609 | None:intergenic | 45.0% | |
| TAGAGGAAGGTAGAGCTTCA+AGG | - | chr1_4:62118595-62118614 | None:intergenic | 45.0% | |
| !! | TGAATGGGTTAGGCCCATTA+AGG | - | chr1_4:62118772-62118791 | None:intergenic | 45.0% |
| TCGACTACAGTTCGAAAAGC+AGG | - | chr1_4:62119145-62119164 | None:intergenic | 45.0% | |
| TTCAATGAGATCCAAGAGGG+CGG | + | chr1_4:62119471-62119490 | Msa0175950:intron | 45.0% | |
| GATGATTCCTCCCATGAACA+AGG | - | chr1_4:62119499-62119518 | None:intergenic | 45.0% | |
| ! | GGGGTCAAGTTCTTTAGAAG+TGG | + | chr1_4:62119553-62119572 | Msa0175950:intron | 45.0% |
| GTGGAGGAGATTGATGTAGT+AGG | + | chr1_4:62119572-62119591 | Msa0175950:intron | 45.0% | |
| ! | ACGTGGATGCTTCATTTTGG+GGG | - | chr1_4:62120054-62120073 | None:intergenic | 45.0% |
| ! | GACGTGGATGCTTCATTTTG+GGG | - | chr1_4:62120055-62120074 | None:intergenic | 45.0% |
| ACCAGCAGAGAAAACCAAAG+CGG | + | chr1_4:62120292-62120311 | Msa0175950:CDS | 45.0% | |
| ! | CTTCTTCTTCTTGTCGGTTG+AGG | - | chr1_4:62120342-62120361 | None:intergenic | 45.0% |
| CATCTTCAAGGTTCTCAAGC+AGG | + | chr1_4:62120397-62120416 | Msa0175950:CDS | 45.0% | |
| AAGCAGGTTCATCCTGACAT+TGG | + | chr1_4:62120413-62120432 | Msa0175950:CDS | 45.0% | |
| TGGTATCTCAAGCAAGGCTA+TGG | + | chr1_4:62120433-62120452 | Msa0175950:CDS | 45.0% | |
| GGTATCTCAAGCAAGGCTAT+GGG | + | chr1_4:62120434-62120453 | Msa0175950:CDS | 45.0% | |
| GTATCTCAAGCAAGGCTATG+GGG | + | chr1_4:62120435-62120454 | Msa0175950:CDS | 45.0% | |
| ! | TATCTTTGAGAAGCTCGCTC+AGG | + | chr1_4:62120481-62120500 | Msa0175950:CDS | 45.0% |
| ! | CTTGTTGTATCGAGCAAGTC+TGG | - | chr1_4:62120513-62120532 | None:intergenic | 45.0% |
| ATCTCACGAGAAGTGATGGT+AGG | - | chr1_4:62120539-62120558 | None:intergenic | 45.0% | |
| CTGAATCTCACGAGAAGTGA+TGG | - | chr1_4:62120543-62120562 | None:intergenic | 45.0% | |
| !! | AAAAGAAAATTATTAAAATT+AGG | - | chr1_4:62119633-62119652 | None:intergenic | 5.0% |
| !! | ATATATAAAATAATTAATAG+CGG | - | chr1_4:62119862-62119881 | None:intergenic | 5.0% |
| !!! | TAAAAAAAAAAATAATTTTG+GGG | - | chr1_4:62119945-62119964 | None:intergenic | 5.0% |
| !! | GATCCGATTTGGGTTCCACA+TGG | + | chr1_4:62116157-62116176 | Msa0175950:CDS | 50.0% |
| CCTCCATGTGGAACCCAAAT+CGG | - | chr1_4:62116163-62116182 | None:intergenic | 50.0% | |
| ! | TCGAACAGTCGCACCCTTTT+TGG | - | chr1_4:62116254-62116273 | None:intergenic | 50.0% |
| ! | GTGCAGGAGTAGTTCGCTTT+TGG | - | chr1_4:62116774-62116793 | None:intergenic | 50.0% |
| CATCCATACAGACAGGTAGG+CGG | + | chr1_4:62116804-62116823 | Msa0175950:intron | 50.0% | |
| GTGACGACCTTGAGGAGATT+TGG | - | chr1_4:62117082-62117101 | None:intergenic | 50.0% | |
| AGCTAGAGAGAGCTAGAGGA+AGG | - | chr1_4:62118608-62118627 | None:intergenic | 50.0% | |
| GGAAAGCTAGAGAGAGCTAG+AGG | - | chr1_4:62118612-62118631 | None:intergenic | 50.0% | |
| ! | GGTTGCGACCGTTTTATCGT+GGG | - | chr1_4:62119303-62119322 | None:intergenic | 50.0% |
| ! | CGTGGATGCTTCATTTTGGG+GGG | - | chr1_4:62120053-62120072 | None:intergenic | 50.0% |
| ! | TTTTGCGCTTGGGTGTGGAA+TGG | - | chr1_4:62120136-62120155 | None:intergenic | 50.0% |
| ! | TGTGATTTTGCGCTTGGGTG+TGG | - | chr1_4:62120141-62120160 | None:intergenic | 50.0% |
| GCAGGTTTCTTCTCTCCCTT+TGG | - | chr1_4:62120248-62120267 | None:intergenic | 50.0% | |
| !!! | TCCGCTTTGGTTTTCTCTGC+TGG | - | chr1_4:62120296-62120315 | None:intergenic | 50.0% |
| TGGGATCTTCTTCTCCGCTT+TGG | - | chr1_4:62120309-62120328 | None:intergenic | 50.0% | |
| AGCGGAGAAGAAGATCCCAA+AGG | + | chr1_4:62120310-62120329 | Msa0175950:CDS | 50.0% | |
| CGGTTGAGGATGCTTCCTTT+GGG | - | chr1_4:62120328-62120347 | None:intergenic | 50.0% | |
| TCGGTTGAGGATGCTTCCTT+TGG | - | chr1_4:62120329-62120348 | None:intergenic | 50.0% | |
| ! | GCTGTTCGTCTTGTTCTTCC+TGG | + | chr1_4:62120566-62120585 | Msa0175950:CDS | 50.0% |
| ACAGGGGAGGTGATCCGATT+TGG | + | chr1_4:62116146-62116165 | Msa0175950:CDS | 55.0% | |
| CAGGGGAGGTGATCCGATTT+GGG | + | chr1_4:62116147-62116166 | Msa0175950:CDS | 55.0% | |
| !! | CCGATTTGGGTTCCACATGG+AGG | + | chr1_4:62116160-62116179 | Msa0175950:CDS | 55.0% |
| TGACCGCCTACCTGTCTGTA+TGG | - | chr1_4:62116810-62116829 | None:intergenic | 55.0% | |
| AGGTAGGCGGTCAAAACCAC+TGG | + | chr1_4:62116817-62116836 | Msa0175950:intron | 55.0% | |
| TAGGCGGTCAAAACCACTGG+AGG | + | chr1_4:62116820-62116839 | Msa0175950:intron | 55.0% | |
| CATCATGGGTGACGACCTTG+AGG | - | chr1_4:62117090-62117109 | None:intergenic | 55.0% | |
| CGAGCAAGCCCAGAAGTTTC+TGG | - | chr1_4:62117884-62117903 | None:intergenic | 55.0% | |
| ! | AACTTCTGGGCTTGCTCGCT+TGG | + | chr1_4:62117886-62117905 | Msa0175950:CDS | 55.0% |
| ! | CGGTTGCGACCGTTTTATCG+TGG | - | chr1_4:62119304-62119323 | None:intergenic | 55.0% |
| ! | GTCGCAACCGTGTCTTTTGC+TGG | + | chr1_4:62119314-62119333 | Msa0175950:intron | 55.0% |
| GAATTCGCGGATCGATGACG+TGG | - | chr1_4:62120071-62120090 | None:intergenic | 55.0% | |
| TGAGAAGAAGCCCGCAGAGA+AGG | + | chr1_4:62120268-62120287 | Msa0175950:CDS | 55.0% | |
| ! | GGTGACAGCTTTGGTTCCCT+CGG | - | chr1_4:62120615-62120634 | None:intergenic | 55.0% |
| GTGCACTTGGGGACCAATCC+AGG | - | chr1_4:62117805-62117824 | None:intergenic | 60.0% | |
| ! | GCTTGCTGCTCGCTTAAGCG+TGG | + | chr1_4:62117925-62117944 | Msa0175950:CDS | 60.0% |
| TGAACAAGGGACCGCCCTCT+TGG | - | chr1_4:62119485-62119504 | None:intergenic | 60.0% | |
| AGAGGGCGGTCCCTTGTTCA+TGG | + | chr1_4:62119485-62119504 | Msa0175950:intron | 60.0% | |
| GAGGGCGGTCCCTTGTTCAT+GGG | + | chr1_4:62119486-62119505 | Msa0175950:intron | 60.0% | |
| TCTGCGGGCTTCTTCTCAGC+AGG | - | chr1_4:62120266-62120285 | None:intergenic | 60.0% | |
| TCTGCTGGTGCCTTCTCTGC+GGG | - | chr1_4:62120281-62120300 | None:intergenic | 60.0% | |
| CTCTGCTGGTGCCTTCTCTG+CGG | - | chr1_4:62120282-62120301 | None:intergenic | 60.0% | |
| CTTGCTCGCTTGGAGCTCGC+TGG | + | chr1_4:62117896-62117915 | Msa0175950:CDS | 65.0% | |
| GGCGGTCCCTTGTTCATGGG+AGG | + | chr1_4:62119489-62119508 | Msa0175950:intron | 65.0% | |
| GCGTGCTTGGCGAGTTCACC+AGG | - | chr1_4:62120587-62120606 | None:intergenic | 65.0% | |
| GCCAAGCACGCTGTCTCCGA+GGG | + | chr1_4:62120596-62120615 | Msa0175950:CDS | 65.0% | |
| TCCCTCGGAGACAGCGTGCT+TGG | - | chr1_4:62120600-62120619 | None:intergenic | 65.0% | |
| CGCCAAGCACGCTGTCTCCG+AGG | + | chr1_4:62120595-62120614 | Msa0175950:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62115971 | 62120652 | 62115971 | ID=Msa0175950;Name=Msa0175950 |
| chr1_4 | mRNA | 62115971 | 62120652 | 62115971 | ID=Msa0175950-mRNA-1;Parent=Msa0175950;Name=Msa0175950-mRNA-1;_AED=0.22;_eAED=0.24;_QI=0|0|0|0.66|1|1|3|0|333 |
| chr1_4 | exon | 62115971 | 62116417 | 62115971 | ID=Msa0175950-mRNA-1:exon:19924;Parent=Msa0175950-mRNA-1 |
| chr1_4 | exon | 62117854 | 62117973 | 62117854 | ID=Msa0175950-mRNA-1:exon:19925;Parent=Msa0175950-mRNA-1 |
| chr1_4 | exon | 62120218 | 62120652 | 62120218 | ID=Msa0175950-mRNA-1:exon:19926;Parent=Msa0175950-mRNA-1 |
| chr1_4 | CDS | 62115971 | 62116417 | 62115971 | ID=Msa0175950-mRNA-1:cds;Parent=Msa0175950-mRNA-1 |
| chr1_4 | CDS | 62117854 | 62117973 | 62117854 | ID=Msa0175950-mRNA-1:cds;Parent=Msa0175950-mRNA-1 |
| chr1_4 | CDS | 62120218 | 62120652 | 62120218 | ID=Msa0175950-mRNA-1:cds;Parent=Msa0175950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
