Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177000 | RHN58597.1 | 60.741 | 135 | 14 | 1 | 160 | 255 | 111 | 245 | 1.81e-38 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177000 | sp|Q8H151|AAE13_ARATH | 45.985 | 137 | 28 | 3 | 158 | 255 | 124 | 253 | 2.55e-21 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177000 | A0A396I6X9 | 60.741 | 135 | 14 | 1 | 160 | 255 | 111 | 245 | 8.66e-39 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0177000 | Msa0815210 | 0.856228 | 3.707925e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177000 | MtrunA17_Chr4g0004091 | 60.741 | 135 | 14 | 1 | 160 | 255 | 111 | 245 | 1.67e-42 | 149 |
| Msa0177000 | MtrunA17_Chr4g0004831 | 50.000 | 158 | 40 | 1 | 137 | 255 | 83 | 240 | 2.91e-37 | 134 |
| Msa0177000 | MtrunA17_Chr2g0282041 | 67.532 | 77 | 17 | 2 | 97 | 173 | 140 | 208 | 1.85e-23 | 101 |
| Msa0177000 | MtrunA17_Chr4g0047751 | 82.692 | 52 | 9 | 0 | 97 | 148 | 151 | 202 | 1.80e-22 | 98.2 |
| Msa0177000 | MtrunA17_Chr8g0337861 | 96.667 | 30 | 1 | 0 | 90 | 119 | 31 | 60 | 6.65e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177000 | AT4G21660.1 | 84.615 | 52 | 8 | 0 | 97 | 148 | 156 | 207 | 1.79e-22 | 98.6 |
| Msa0177000 | AT4G21660.2 | 84.615 | 52 | 8 | 0 | 97 | 148 | 156 | 207 | 2.08e-22 | 98.6 |
| Msa0177000 | AT3G16170.1 | 45.985 | 137 | 28 | 3 | 158 | 255 | 124 | 253 | 2.59e-22 | 98.2 |
| Msa0177000 | AT4G21660.3 | 66.667 | 69 | 23 | 0 | 97 | 165 | 156 | 224 | 4.48e-22 | 97.8 |
Find 82 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATGTCAATGAGTTATT+TGG | 0.162803 | 1_4:+63709423 | Msa0177000:CDS |
| AGAATTGGACATTCACAAAA+TGG | 0.255854 | 1_4:+63711251 | Msa0177000:CDS |
| TTCTTGCAGGGGAGCGGCTT+TGG | 0.257739 | 1_4:+63710223 | Msa0177000:intron |
| TCCTCTTAAAAGAGTAGAAT+TGG | 0.300187 | 1_4:+63711236 | Msa0177000:intron |
| CCTTTCCTTAAGGAATATAA+TGG | 0.302076 | 1_4:-63712532 | None:intergenic |
| GAATACTTACAACAACAATT+TGG | 0.318130 | 1_4:-63711768 | None:intergenic |
| TCAAATGTACCGTCGAATTC+AGG | 0.346423 | 1_4:+63709258 | Msa0177000:CDS |
| ATGTTCCATTATATTCCTTA+AGG | 0.347869 | 1_4:+63712527 | Msa0177000:three_prime_UTR |
| CCGTCTGCTGAATTTGTTGC+TGG | 0.348843 | 1_4:+63710775 | Msa0177000:CDS |
| TTTGAGGACACTGCTGCTTC+AGG | 0.350191 | 1_4:+63709465 | Msa0177000:CDS |
| CAGCTCTGAAGAACATTATC+AGG | 0.356591 | 1_4:+63707824 | Msa0177000:CDS |
| CTTCCAACAATTGCAGGTTA+TGG | 0.369594 | 1_4:-63709564 | None:intergenic |
| ATGATGTCAATGAGTTATTT+GGG | 0.383488 | 1_4:+63709424 | Msa0177000:CDS |
| TGGCAATGAACCTTTCCTTA+AGG | 0.394672 | 1_4:-63712542 | None:intergenic |
| TGCAGCAGATCCTAAGTTGC+TGG | 0.399151 | 1_4:+63709988 | Msa0177000:CDS |
| TCATACCTTCCAACAATTGC+AGG | 0.410987 | 1_4:-63709570 | None:intergenic |
| GTCTTCTTCACTGGTCCTAC+AGG | 0.415281 | 1_4:+63711535 | Msa0177000:CDS |
| GAATTGGACATTCACAAAAT+GGG | 0.421927 | 1_4:+63711252 | Msa0177000:CDS |
| AATGCAACATGTGGGAATAT+TGG | 0.431829 | 1_4:+63711709 | Msa0177000:CDS |
| TATATATCAGACATACCCTT+AGG | 0.432727 | 1_4:+63709192 | Msa0177000:intron |
| CTTTGGATTAGGTGAAGATC+TGG | 0.434162 | 1_4:+63711421 | Msa0177000:intron |
| CTGATAATGTTCTTCAGAGC+TGG | 0.435831 | 1_4:-63707823 | None:intergenic |
| ATTGAAATCTAGGGAAATCT+TGG | 0.437953 | 1_4:+63710724 | Msa0177000:intron |
| GTATTCTCTATTATTACAGT+TGG | 0.447728 | 1_4:+63711676 | Msa0177000:CDS |
| TTCTCTATTATTACAGTTGG+AGG | 0.450730 | 1_4:+63711679 | Msa0177000:CDS |
| TCTAAAGGCACATAAATGAT+TGG | 0.452447 | 1_4:+63712649 | Msa0177000:three_prime_UTR |
| ATACTCGCGACTTGGTTTAG+TGG | 0.453344 | 1_4:+63710799 | Msa0177000:CDS |
| TCTCTATGTGATGAAGAATT+CGG | 0.459964 | 1_4:+63710867 | Msa0177000:CDS |
| AGACAAATTGTCTTCTTCAC+TGG | 0.467398 | 1_4:+63711526 | Msa0177000:CDS |
| TTAATCGTAACTACTTCTAA+AGG | 0.467521 | 1_4:+63712634 | Msa0177000:three_prime_UTR |
| TTGTACACTAGCGGGACAAC+AGG | 0.468065 | 1_4:+63711452 | Msa0177000:CDS |
| ATGGCGGAGACGGCGAGGTA+CGG | 0.471966 | 1_4:-63707798 | None:intergenic |
| GCTTTGGCAATCACCAATCC+TGG | 0.472204 | 1_4:+63710239 | Msa0177000:CDS |
| GCAGTACGGATCAGAGGACT+GGG | 0.487725 | 1_4:-63712449 | None:intergenic |
| TAGCCATAACCTGCAATTGT+TGG | 0.488861 | 1_4:+63709561 | Msa0177000:intron |
| AATCTTGGTGGAGCTCGAAT+AGG | 0.490823 | 1_4:+63710739 | Msa0177000:CDS |
| TTGCTGGAATACTCGCGACT+TGG | 0.497836 | 1_4:+63710791 | Msa0177000:CDS |
| TTCCAAACACCTACCAGTCC+AGG | 0.501998 | 1_4:-63710257 | None:intergenic |
| ATGTGGTTCTTGCAGGGGAG+CGG | 0.504014 | 1_4:+63710217 | Msa0177000:intron |
| ACTCCTACCACAACAACATC+AGG | 0.506236 | 1_4:-63709861 | None:intergenic |
| TATTGCAGATACATTTCAGT+TGG | 0.520975 | 1_4:-63712562 | None:intergenic |
| TGATGTTGATAATGAATTTG+AGG | 0.521778 | 1_4:+63709449 | Msa0177000:CDS |
| AGCAGTACGGATCAGAGGAC+TGG | 0.521916 | 1_4:-63712450 | None:intergenic |
| TACCCTTAGGGATGGATGGA+TGG | 0.529376 | 1_4:+63709205 | Msa0177000:CDS |
| TGATAATGTTCTTCAGAGCT+GGG | 0.529587 | 1_4:-63707822 | None:intergenic |
| TGTGACCAATGCCTAGGTGC+AGG | 0.530298 | 1_4:-63710040 | None:intergenic |
| AACACCTACCAGTCCAGGAT+TGG | 0.539428 | 1_4:-63710252 | None:intergenic |
| CCATTATATTCCTTAAGGAA+AGG | 0.542881 | 1_4:+63712532 | Msa0177000:three_prime_UTR |
| GAAATCTAGGGAAATCTTGG+TGG | 0.544787 | 1_4:+63710727 | Msa0177000:intron |
| CCAATGCCTAGGTGCAGGTA+CGG | 0.548490 | 1_4:-63710035 | None:intergenic |
| ATGTTCTTCAGAGCTGGGTA+TGG | 0.549422 | 1_4:-63707817 | None:intergenic |
| AAGCCATCCATCCATCCCTA+AGG | 0.550591 | 1_4:-63709208 | None:intergenic |
| GACATACCCTTAGGGATGGA+TGG | 0.550867 | 1_4:+63709201 | Msa0177000:intron |
| AGAGCTGGGTATGGCGGAGA+CGG | 0.551603 | 1_4:-63707808 | None:intergenic |
| GGCAATCACCAATCCTGGAC+TGG | 0.554841 | 1_4:+63710244 | Msa0177000:CDS |
| TCTGCATAGCTGAGTGCAAG+TGG | 0.559278 | 1_4:-63710835 | None:intergenic |
| GCGTGTATATTCTTAAGAGC+TGG | 0.559724 | 1_4:+63712487 | Msa0177000:three_prime_UTR |
| ATATATCAGACATACCCTTA+GGG | 0.560336 | 1_4:+63709193 | Msa0177000:intron |
| CCAGCAACAAATTCAGCAGA+CGG | 0.563226 | 1_4:-63710775 | None:intergenic |
| TCTCTATTATTACAGTTGGA+GGG | 0.566642 | 1_4:+63711680 | Msa0177000:CDS |
| CTCAAGACCTGATGTTGTTG+TGG | 0.574621 | 1_4:+63709854 | Msa0177000:CDS |
| ATCAGACATACCCTTAGGGA+TGG | 0.575259 | 1_4:+63709197 | Msa0177000:intron |
| TTCTTCAGAGCTGGGTATGG+CGG | 0.576008 | 1_4:-63707814 | None:intergenic |
| CCGTACCTGCACCTAGGCAT+TGG | 0.578210 | 1_4:+63710035 | Msa0177000:CDS |
| CATAACCTGCAATTGTTGGA+AGG | 0.584273 | 1_4:+63709565 | Msa0177000:CDS |
| CTGAAGAACATTATCAGGAT+CGG | 0.593763 | 1_4:+63707829 | Msa0177000:CDS |
| GGGCTTCTTAATGCAACATG+TGG | 0.594840 | 1_4:+63711700 | Msa0177000:CDS |
| AATTGGACATTCACAAAATG+GGG | 0.610443 | 1_4:+63711253 | Msa0177000:CDS |
| CTCGCGACTTGGTTTAGTGG+AGG | 0.621339 | 1_4:+63710802 | Msa0177000:CDS |
| GGCTTCTTAATGCAACATGT+GGG | 0.624011 | 1_4:+63711701 | Msa0177000:CDS |
| ATTCAAGCAGTACGGATCAG+AGG | 0.627015 | 1_4:-63712455 | None:intergenic |
| AGCCATCCATCCATCCCTAA+GGG | 0.629828 | 1_4:-63709207 | None:intergenic |
| CGAAACATATTCAAGCAGTA+CGG | 0.630967 | 1_4:-63712463 | None:intergenic |
| AGTACGGATCAGAGGACTGG+GGG | 0.635516 | 1_4:-63712447 | None:intergenic |
| AGAGCTGGTAGAGTGTACAT+TGG | 0.642584 | 1_4:+63712502 | Msa0177000:three_prime_UTR |
| TGGGTATGGCGGAGACGGCG+AGG | 0.654911 | 1_4:-63707803 | None:intergenic |
| GCGGAGACGGCGAGGTACGG+CGG | 0.662251 | 1_4:-63707795 | None:intergenic |
| CAGTACGGATCAGAGGACTG+GGG | 0.675701 | 1_4:-63712448 | None:intergenic |
| GTAACACCGTACCTGCACCT+AGG | 0.692657 | 1_4:+63710029 | Msa0177000:CDS |
| GTACGGATCAGAGGACTGGG+GGG | 0.703947 | 1_4:-63712446 | None:intergenic |
| TGATGTCAATGAGTTATTTG+GGG | 0.714769 | 1_4:+63709425 | Msa0177000:CDS |
| CGGCGGTGAGAAGAAGATCG+CGG | 0.716171 | 1_4:-63707778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAATTTCATATAAA+AGG | - | chr1_4:63711015-63711034 | None:intergenic | 10.0% |
| !!! | AAAATTGTTTTAGTGATTTT+AGG | + | chr1_4:63708085-63708104 | Msa0177000:intron | 15.0% |
| !!! | AAATTGTTTTAGTGATTTTA+GGG | + | chr1_4:63708086-63708105 | Msa0177000:intron | 15.0% |
| !!! | CATCTAAATTTTCAATAAAA+GGG | - | chr1_4:63708614-63708633 | None:intergenic | 15.0% |
| !! | ATATATATACAGCAAATATA+TGG | - | chr1_4:63709179-63709198 | None:intergenic | 15.0% |
| !!! | TAGTAATATCATTTTCAAAT+TGG | + | chr1_4:63709665-63709684 | Msa0177000:intron | 15.0% |
| !!! | ATTATCTTTGTTATATTGAT+TGG | + | chr1_4:63710308-63710327 | Msa0177000:intron | 15.0% |
| !!! | TTATCTTTGTTATATTGATT+GGG | + | chr1_4:63710309-63710328 | Msa0177000:intron | 15.0% |
| !! | ATTAATTATCTAAACTTAGA+TGG | + | chr1_4:63712184-63712203 | Msa0177000:intron | 15.0% |
| !!! | TAATGATCTTTAAAAACATT+TGG | + | chr1_4:63712609-63712628 | Msa0177000:three_prime_UTR | 15.0% |
| !! | TTTCAGAAAATTATGTGTTT+CGG | + | chr1_4:63708036-63708055 | Msa0177000:intron | 20.0% |
| !!! | AAATCACTAAAACAATTTTC+TGG | - | chr1_4:63708084-63708103 | None:intergenic | 20.0% |
| !!! | TGTATCTTTGATTTTAATTG+AGG | + | chr1_4:63708331-63708350 | Msa0177000:intron | 20.0% |
| !!! | GTATCTTTGATTTTAATTGA+GGG | + | chr1_4:63708332-63708351 | Msa0177000:intron | 20.0% |
| !!! | AAATTTTTTCACTTCTTTTG+TGG | - | chr1_4:63708425-63708444 | None:intergenic | 20.0% |
| !!! | TTAGTCTGAGATAAAAATAA+TGG | + | chr1_4:63708466-63708485 | Msa0177000:intron | 20.0% |
| !!! | TAGTCTGAGATAAAAATAAT+GGG | + | chr1_4:63708467-63708486 | Msa0177000:intron | 20.0% |
| !!! | GAAGTATCTTTTGATTTTTT+TGG | + | chr1_4:63708494-63708513 | Msa0177000:intron | 20.0% |
| !! | CGTAAATAACAAATAAGTAA+TGG | - | chr1_4:63708587-63708606 | None:intergenic | 20.0% |
| !!! | CCATCTAAATTTTCAATAAA+AGG | - | chr1_4:63708615-63708634 | None:intergenic | 20.0% |
| !!! | CCTTTTATTGAAAATTTAGA+TGG | + | chr1_4:63708612-63708631 | Msa0177000:intron | 20.0% |
| !! | ATAAAACCCTAAATAAAAGA+GGG | - | chr1_4:63708913-63708932 | None:intergenic | 20.0% |
| !!! | TTGAAGTTTAAAATGCTTTT+CGG | + | chr1_4:63709504-63709523 | Msa0177000:intron | 20.0% |
| !!! | AATATCATTTTCAAATTGGT+TGG | + | chr1_4:63709669-63709688 | Msa0177000:intron | 20.0% |
| !!! | AGAATTAGTTTCAAATTGTT+GGG | + | chr1_4:63709896-63709915 | Msa0177000:intron | 20.0% |
| !!! | TGTTTCATAATTTCATTTTC+AGG | + | chr1_4:63709952-63709971 | Msa0177000:intron | 20.0% |
| !!! | ATAATTTCATTTTCAGGTTT+GGG | + | chr1_4:63709958-63709977 | Msa0177000:intron | 20.0% |
| !!! | CTTAACTTGATAGTTATTAT+AGG | + | chr1_4:63710094-63710113 | Msa0177000:intron | 20.0% |
| !! | AGGTTTATCTTATATATGTA+TGG | + | chr1_4:63710194-63710213 | Msa0177000:intron | 20.0% |
| !!! | TTTGTTTGGTGTTTTTATTT+TGG | + | chr1_4:63710434-63710453 | Msa0177000:intron | 20.0% |
| !! | ATCAATCTGCTAAAAATTTA+AGG | + | chr1_4:63710597-63710616 | Msa0177000:intron | 20.0% |
| !!! | ATATGAAATTTTCAAATAGC+TGG | + | chr1_4:63711018-63711037 | Msa0177000:intron | 20.0% |
| !!! | ACATTTTCAGCTTTTAAAAA+TGG | + | chr1_4:63711332-63711351 | Msa0177000:intron | 20.0% |
| !!! | TTTAAAATGGAAGTGTTAAT+TGG | - | chr1_4:63711907-63711926 | None:intergenic | 20.0% |
| !! | TTAAATACCTCGATTTAAAA+TGG | - | chr1_4:63711920-63711939 | None:intergenic | 20.0% |
| !! | ATAATTAATATCAGCAACAT+AGG | - | chr1_4:63712173-63712192 | None:intergenic | 20.0% |
| ! | TTGCATGTGTAAATTGAATT+AGG | + | chr1_4:63707894-63707913 | Msa0177000:intron | 25.0% |
| ! | TGCATGTGTAAATTGAATTA+GGG | + | chr1_4:63707895-63707914 | Msa0177000:intron | 25.0% |
| ! | TGTAAATTGAATTAGGGTTA+GGG | + | chr1_4:63707901-63707920 | Msa0177000:intron | 25.0% |
| !!! | GGGTTTTTTGATTTTAATTG+AGG | + | chr1_4:63707949-63707968 | Msa0177000:intron | 25.0% |
| !!! | GGTTTGTTTTAGTGATTTTA+GGG | + | chr1_4:63708140-63708159 | Msa0177000:intron | 25.0% |
| ! | AACAGTGAAACACAAAATTA+AGG | - | chr1_4:63708201-63708220 | None:intergenic | 25.0% |
| !!! | TTTGCATTGATTAGTTGATT+TGG | + | chr1_4:63708223-63708242 | Msa0177000:intron | 25.0% |
| ! | ATTTGAGAGAGAAGAAATAA+TGG | + | chr1_4:63708441-63708460 | Msa0177000:intron | 25.0% |
| ! | TTTGAGAGAGAAGAAATAAT+GGG | + | chr1_4:63708442-63708461 | Msa0177000:intron | 25.0% |
| ! | TTGAAAATTTAGATGGACAA+TGG | + | chr1_4:63708619-63708638 | Msa0177000:intron | 25.0% |
| ! | TAGGAACTGAAAACTAAATT+TGG | + | chr1_4:63708812-63708831 | Msa0177000:intron | 25.0% |
| ! | CATAAAACCCTAAATAAAAG+AGG | - | chr1_4:63708914-63708933 | None:intergenic | 25.0% |
| !!! | CTCTTTTATTTAGGGTTTTA+TGG | + | chr1_4:63708912-63708931 | Msa0177000:intron | 25.0% |
| ! | CACTGAAATAAATTGTATCA+CGG | + | chr1_4:63709002-63709021 | Msa0177000:intron | 25.0% |
| !! | TCAGCTTTTATATATAACGA+TGG | - | chr1_4:63709315-63709334 | None:intergenic | 25.0% |
| ! | TCATTAGTGAACACTATAAT+TGG | + | chr1_4:63709335-63709354 | Msa0177000:intron | 25.0% |
| ! | AATGATGTCAATGAGTTATT+TGG | + | chr1_4:63709423-63709442 | Msa0177000:CDS | 25.0% |
| ! | ATGATGTCAATGAGTTATTT+GGG | + | chr1_4:63709424-63709443 | Msa0177000:CDS | 25.0% |
| !!! | TGATGTTGATAATGAATTTG+AGG | + | chr1_4:63709449-63709468 | Msa0177000:CDS | 25.0% |
| ! | ATTACTACTTCTGATAAAAG+TGG | - | chr1_4:63709652-63709671 | None:intergenic | 25.0% |
| !! | CAGAATTAGTTTCAAATTGT+TGG | + | chr1_4:63709895-63709914 | Msa0177000:intron | 25.0% |
| ! | ATGAAACATCATTTGCATAA+CGG | - | chr1_4:63709940-63709959 | None:intergenic | 25.0% |
| !!! | CATAATTTCATTTTCAGGTT+TGG | + | chr1_4:63709957-63709976 | Msa0177000:intron | 25.0% |
| !! | ACAAAAGAGAAAATTTTTGC+AGG | + | chr1_4:63710060-63710079 | Msa0177000:intron | 25.0% |
| ! | TGAAATTGATGAAGTCAATA+AGG | + | chr1_4:63710174-63710193 | Msa0177000:intron | 25.0% |
| ! | ATCTTATATATGTATGGATG+TGG | + | chr1_4:63710200-63710219 | Msa0177000:intron | 25.0% |
| ! | AATAAATGAGAAACAACTCA+AGG | - | chr1_4:63710291-63710310 | None:intergenic | 25.0% |
| !! | TGTTATATTGATTGGGAATA+TGG | + | chr1_4:63710316-63710335 | Msa0177000:intron | 25.0% |
| !!! | TAATGCACAAGATATTTTTG+TGG | + | chr1_4:63710469-63710488 | Msa0177000:intron | 25.0% |
| !! | TAGCAATTTTTCTCTGAATT+TGG | + | chr1_4:63710505-63710524 | Msa0177000:intron | 25.0% |
| ! | TTGAATACTTAGTCTATTGT+TGG | + | chr1_4:63710624-63710643 | Msa0177000:intron | 25.0% |
| ! | TGAATACTTAGTCTATTGTT+GGG | + | chr1_4:63710625-63710644 | Msa0177000:intron | 25.0% |
| ! | TCGTTTAGTCAAATTATGTA+TGG | + | chr1_4:63710700-63710719 | Msa0177000:intron | 25.0% |
| ! | ACATTAAACAGACAAAAGAA+AGG | - | chr1_4:63710931-63710950 | None:intergenic | 25.0% |
| !! | ATTTTCCATTGACATTATCT+TGG | + | chr1_4:63710987-63711006 | Msa0177000:intron | 25.0% |
| !! | ATCATATATACTTTTCACGA+AGG | - | chr1_4:63711063-63711082 | None:intergenic | 25.0% |
| ! | TTCAAAATGAAACTTACCTA+AGG | + | chr1_4:63711093-63711112 | Msa0177000:intron | 25.0% |
| !!! | CTCTTTTAAGAGGAATTATT+AGG | - | chr1_4:63711230-63711249 | None:intergenic | 25.0% |
| !!! | CATTTGTTTTTCATATCCTT+TGG | + | chr1_4:63711404-63711423 | Msa0177000:intron | 25.0% |
| !! | TTTTTCATATCCTTTGGATT+AGG | + | chr1_4:63711410-63711429 | Msa0177000:intron | 25.0% |
| !! | GAACAATTTTATATACCTGT+AGG | - | chr1_4:63711553-63711572 | None:intergenic | 25.0% |
| ! | GTATTCTCTATTATTACAGT+TGG | + | chr1_4:63711676-63711695 | Msa0177000:CDS | 25.0% |
| ! | GAATACTTACAACAACAATT+TGG | - | chr1_4:63711771-63711790 | None:intergenic | 25.0% |
| !! | TGTTGTAAGTATTCTCTTTT+AGG | + | chr1_4:63711777-63711796 | Msa0177000:intron | 25.0% |
| !!! | GAAGTGTTAATTGGATTTTA+GGG | - | chr1_4:63711898-63711917 | None:intergenic | 25.0% |
| ! | ATTATCTAAACTTAGATGGA+AGG | + | chr1_4:63712188-63712207 | Msa0177000:intron | 25.0% |
| ! | TTATCTAAACTTAGATGGAA+GGG | + | chr1_4:63712189-63712208 | Msa0177000:intron | 25.0% |
| ! | TATTAGTGTAACTAAGATGA+AGG | - | chr1_4:63712261-63712280 | None:intergenic | 25.0% |
| ! | TTCATCTTAGTTACACTAAT+AGG | + | chr1_4:63712260-63712279 | Msa0177000:intron | 25.0% |
| ! | ATGTTCCATTATATTCCTTA+AGG | + | chr1_4:63712527-63712546 | Msa0177000:three_prime_UTR | 25.0% |
| ! | TTAATCGTAACTACTTCTAA+AGG | + | chr1_4:63712634-63712653 | Msa0177000:three_prime_UTR | 25.0% |
| TTTACACATGCAAATTCTGA+AGG | - | chr1_4:63707887-63707906 | None:intergenic | 30.0% | |
| GTGTAAATTGAATTAGGGTT+AGG | + | chr1_4:63707900-63707919 | Msa0177000:intron | 30.0% | |
| !!! | TAATTGAGGTTTTGATTCCT+TGG | + | chr1_4:63707963-63707982 | Msa0177000:intron | 30.0% |
| !!! | GATTTTAGGGTTTCATTTCT+TGG | + | chr1_4:63708099-63708118 | Msa0177000:intron | 30.0% |
| !!! | TTGGTTTTGGGTTTGATTTT+AGG | + | chr1_4:63708118-63708137 | Msa0177000:intron | 30.0% |
| !!! | TGGTTTTGGGTTTGATTTTA+GGG | + | chr1_4:63708119-63708138 | Msa0177000:intron | 30.0% |
| !!! | GGGTTTGTTTTAGTGATTTT+AGG | + | chr1_4:63708139-63708158 | Msa0177000:intron | 30.0% |
| !! | ATTAGTTGATTTGGAATGAC+AGG | + | chr1_4:63708232-63708251 | Msa0177000:intron | 30.0% |
| !! | TTAGTTGATTTGGAATGACA+GGG | + | chr1_4:63708233-63708252 | Msa0177000:intron | 30.0% |
| !! | TTTGATGATGCTAATGTTTG+TGG | + | chr1_4:63708277-63708296 | Msa0177000:intron | 30.0% |
| !!! | TTTGATTTTAATTGAGGGTC+TGG | + | chr1_4:63708337-63708356 | Msa0177000:intron | 30.0% |
| ACTTTCACAGTGATTTAGTT+AGG | + | chr1_4:63708793-63708812 | Msa0177000:intron | 30.0% | |
| AAGAATAGTGAGAGTAGAAT+TGG | + | chr1_4:63708946-63708965 | Msa0177000:intron | 30.0% | |
| TGAAATAAATTGTATCACGG+AGG | + | chr1_4:63709005-63709024 | Msa0177000:intron | 30.0% | |
| GGAGGAAACAATCAAATATT+AGG | + | chr1_4:63709023-63709042 | Msa0177000:intron | 30.0% | |
| TATATATCAGACATACCCTT+AGG | + | chr1_4:63709192-63709211 | Msa0177000:intron | 30.0% | |
| ATATATCAGACATACCCTTA+GGG | + | chr1_4:63709193-63709212 | Msa0177000:intron | 30.0% | |
| AAAAACATACCTGAATTCGA+CGG | - | chr1_4:63709270-63709289 | None:intergenic | 30.0% | |
| !!! | CAGGTATGTTTTTAGTCTAT+AGG | + | chr1_4:63709277-63709296 | Msa0177000:intron | 30.0% |
| TGATGTCAATGAGTTATTTG+GGG | + | chr1_4:63709425-63709444 | Msa0177000:CDS | 30.0% | |
| !!! | TTCATTGCATCTTTTTTTGC+AGG | + | chr1_4:63709764-63709783 | Msa0177000:intron | 30.0% |
| AATGATGTAAACATGTCTGA+TGG | + | chr1_4:63710119-63710138 | Msa0177000:intron | 30.0% | |
| TCTGTCTTGAATTTATGTTG+TGG | + | chr1_4:63710357-63710376 | Msa0177000:intron | 30.0% | |
| AGGAAAGCAGTTATCAAAAA+AGG | - | chr1_4:63710384-63710403 | None:intergenic | 30.0% | |
| !! | TTGATAACTGCTTTCCTTTT+TGG | + | chr1_4:63710387-63710406 | Msa0177000:intron | 30.0% |
| CAGAGAAAAATTGCTATATC+TGG | - | chr1_4:63710501-63710520 | None:intergenic | 30.0% | |
| ATTGAGGAGAATAAAAGTTG+AGG | + | chr1_4:63710561-63710580 | Msa0177000:intron | 30.0% | |
| ! | TATGTATGGCATTGAAATCT+AGG | + | chr1_4:63710714-63710733 | Msa0177000:intron | 30.0% |
| ! | ATGTATGGCATTGAAATCTA+GGG | + | chr1_4:63710715-63710734 | Msa0177000:intron | 30.0% |
| ATTGAAATCTAGGGAAATCT+TGG | + | chr1_4:63710724-63710743 | Msa0177000:intron | 30.0% | |
| TCTCTATGTGATGAAGAATT+CGG | + | chr1_4:63710867-63710886 | Msa0177000:CDS | 30.0% | |
| CTTGTGAACATTAAGAATTC+AGG | + | chr1_4:63710955-63710974 | Msa0177000:intron | 30.0% | |
| TACCTAAGGAAGAAAAAAGT+TGG | + | chr1_4:63711107-63711126 | Msa0177000:intron | 30.0% | |
| !! | ATATTGAGTACTGAAGATCA+TGG | + | chr1_4:63711143-63711162 | Msa0177000:intron | 30.0% |
| !! | AAACTGAGAAGAGGTTTTAT+TGG | - | chr1_4:63711189-63711208 | None:intergenic | 30.0% |
| AATATGGAAAAACTGAGAAG+AGG | - | chr1_4:63711198-63711217 | None:intergenic | 30.0% | |
| TAAGAGGAATTATTAGGAAC+AGG | - | chr1_4:63711224-63711243 | None:intergenic | 30.0% | |
| TCCTCTTAAAAGAGTAGAAT+TGG | + | chr1_4:63711236-63711255 | Msa0177000:intron | 30.0% | |
| ! | TCCAATTCTACTCTTTTAAG+AGG | - | chr1_4:63711240-63711259 | None:intergenic | 30.0% |
| AGAATTGGACATTCACAAAA+TGG | + | chr1_4:63711251-63711270 | Msa0177000:CDS | 30.0% | |
| GAATTGGACATTCACAAAAT+GGG | + | chr1_4:63711252-63711271 | Msa0177000:CDS | 30.0% | |
| AATTGGACATTCACAAAATG+GGG | + | chr1_4:63711253-63711272 | Msa0177000:CDS | 30.0% | |
| ! | TTGATCTTTCGACATTTTTC+AGG | - | chr1_4:63711301-63711320 | None:intergenic | 30.0% |
| TTCTCTATTATTACAGTTGG+AGG | + | chr1_4:63711679-63711698 | Msa0177000:CDS | 30.0% | |
| TCTCTATTATTACAGTTGGA+GGG | + | chr1_4:63711680-63711699 | Msa0177000:CDS | 30.0% | |
| !!! | GGAAGTGTTAATTGGATTTT+AGG | - | chr1_4:63711899-63711918 | None:intergenic | 30.0% |
| ! | AACACTTCCATTTTAAATCG+AGG | + | chr1_4:63711910-63711929 | Msa0177000:intron | 30.0% |
| ! | AATCGAGGTATTTAACTAAG+TGG | + | chr1_4:63711925-63711944 | Msa0177000:intron | 30.0% |
| TTCTCAGGATTTGATAAGTT+AGG | - | chr1_4:63711995-63712014 | None:intergenic | 30.0% | |
| ! | TGATATCTTTGAGGAATCAT+GGG | - | chr1_4:63712315-63712334 | None:intergenic | 30.0% |
| ! | TTGATATCTTTGAGGAATCA+TGG | - | chr1_4:63712316-63712335 | None:intergenic | 30.0% |
| TAGAGTGATTGATATCTTTG+AGG | - | chr1_4:63712324-63712343 | None:intergenic | 30.0% | |
| !! | ATCTGCATATTTTCAGGAAA+AGG | + | chr1_4:63712343-63712362 | Msa0177000:intron | 30.0% |
| !! | TCTGCATATTTTCAGGAAAA+GGG | + | chr1_4:63712344-63712363 | Msa0177000:intron | 30.0% |
| CCTTTCCTTAAGGAATATAA+TGG | - | chr1_4:63712535-63712554 | None:intergenic | 30.0% | |
| CCATTATATTCCTTAAGGAA+AGG | + | chr1_4:63712532-63712551 | Msa0177000:three_prime_UTR | 30.0% | |
| TATTGCAGATACATTTCAGT+TGG | - | chr1_4:63712565-63712584 | None:intergenic | 30.0% | |
| ! | TCTAAAGGCACATAAATGAT+TGG | + | chr1_4:63712649-63712668 | Msa0177000:three_prime_UTR | 30.0% |
| ! | TGATAATGTTCTTCAGAGCT+GGG | - | chr1_4:63707825-63707844 | None:intergenic | 35.0% |
| CTGAAGAACATTATCAGGAT+CGG | + | chr1_4:63707829-63707848 | Msa0177000:CDS | 35.0% | |
| ! | TGCTTGCATGTTTTCAGAAA+AGG | + | chr1_4:63707928-63707947 | Msa0177000:intron | 35.0% |
| ! | GCTTGCATGTTTTCAGAAAA+GGG | + | chr1_4:63707929-63707948 | Msa0177000:intron | 35.0% |
| CAAACAACAACACAAAACCA+AGG | - | chr1_4:63707983-63708002 | None:intergenic | 35.0% | |
| ! | AGGGTTTCATTTCTTGGTTT+TGG | + | chr1_4:63708105-63708124 | Msa0177000:intron | 35.0% |
| !! | GGGTTTCATTTCTTGGTTTT+GGG | + | chr1_4:63708106-63708125 | Msa0177000:intron | 35.0% |
| ! | TTAGATGGACAATGGATTTG+AGG | + | chr1_4:63708627-63708646 | Msa0177000:intron | 35.0% |
| CAGTCAACAGAGGAAAAAAA+GGG | + | chr1_4:63708681-63708700 | Msa0177000:intron | 35.0% | |
| AGGTCTCAGTGAATTATATG+TGG | - | chr1_4:63708759-63708778 | None:intergenic | 35.0% | |
| ATGCTTCTGATCCTTTGATT+TGG | + | chr1_4:63708873-63708892 | Msa0177000:intron | 35.0% | |
| ! | TGCTTCTGATCCTTTGATTT+GGG | + | chr1_4:63708874-63708893 | Msa0177000:intron | 35.0% |
| AAATAAAAGAGGGCTCATCA+AGG | - | chr1_4:63708903-63708922 | None:intergenic | 35.0% | |
| !! | TGATGAGCCCTCTTTTATTT+AGG | + | chr1_4:63708903-63708922 | Msa0177000:intron | 35.0% |
| !! | GATGAGCCCTCTTTTATTTA+GGG | + | chr1_4:63708904-63708923 | Msa0177000:intron | 35.0% |
| TAATGATGCTAGCAACTCTA+TGG | + | chr1_4:63709527-63709546 | Msa0177000:intron | 35.0% | |
| ! | CGTTGTCTAATTTTGCGAAT+TGG | - | chr1_4:63709801-63709820 | None:intergenic | 35.0% |
| TTCAAAAACACCAGCAACTT+AGG | - | chr1_4:63710001-63710020 | None:intergenic | 35.0% | |
| CAAGAAACCTCATTCCAAAA+AGG | - | chr1_4:63710404-63710423 | None:intergenic | 35.0% | |
| !!! | CTTTTTGGAATGAGGTTTCT+TGG | + | chr1_4:63710402-63710421 | Msa0177000:intron | 35.0% |
| !!! | GGTGTTTTTATTTTGGAGTG+AGG | + | chr1_4:63710441-63710460 | Msa0177000:intron | 35.0% |
| !! | ACAAGATATTTTTGTGGCCT+TGG | + | chr1_4:63710475-63710494 | Msa0177000:intron | 35.0% |
| AAAATTGCTATATCTGGCCA+AGG | - | chr1_4:63710495-63710514 | None:intergenic | 35.0% | |
| ! | GAATTTGGTTCATTTGACTG+AGG | + | chr1_4:63710520-63710539 | Msa0177000:intron | 35.0% |
| AGTCGAAACACAATGTATTG+AGG | + | chr1_4:63710545-63710564 | Msa0177000:intron | 35.0% | |
| AGGTACCAAGATAATGTCAA+TGG | - | chr1_4:63710995-63711014 | None:intergenic | 35.0% | |
| TATTAGGAACAGGCAGAATA+TGG | - | chr1_4:63711214-63711233 | None:intergenic | 35.0% | |
| AGACAAATTGTCTTCTTCAC+TGG | + | chr1_4:63711526-63711545 | Msa0177000:CDS | 35.0% | |
| AATGCAACATGTGGGAATAT+TGG | + | chr1_4:63711709-63711728 | Msa0177000:CDS | 35.0% | |
| AAGAAGAAGGTTTGAAAGGA+TGG | - | chr1_4:63711805-63711824 | None:intergenic | 35.0% | |
| ACTAAGTGGTTGATCTAAAG+TGG | + | chr1_4:63711939-63711958 | Msa0177000:intron | 35.0% | |
| CTTATCAAATCCTGAGAACA+TGG | + | chr1_4:63711997-63712016 | Msa0177000:intron | 35.0% | |
| AACTATTTCAGAGACGAACA+TGG | - | chr1_4:63712070-63712089 | None:intergenic | 35.0% | |
| TGGAGAGAAAGTAAGAAAGA+TGG | + | chr1_4:63712129-63712148 | Msa0177000:intron | 35.0% | |
| GGAGAGAAAGTAAGAAAGAT+GGG | + | chr1_4:63712130-63712149 | Msa0177000:intron | 35.0% | |
| AGTGTAACTAAGATGAAGGA+TGG | - | chr1_4:63712257-63712276 | None:intergenic | 35.0% | |
| ! | CACTCTATCTGCATATTTTC+AGG | + | chr1_4:63712337-63712356 | Msa0177000:intron | 35.0% |
| CGAAACATATTCAAGCAGTA+CGG | - | chr1_4:63712466-63712485 | None:intergenic | 35.0% | |
| ! | CTGATAATGTTCTTCAGAGC+TGG | - | chr1_4:63707826-63707845 | None:intergenic | 40.0% |
| !! | CAGCTCTGAAGAACATTATC+AGG | + | chr1_4:63707824-63707843 | Msa0177000:CDS | 40.0% |
| !!! | AGGGTCTGGTCTTTTGATTT+TGG | + | chr1_4:63708351-63708370 | Msa0177000:intron | 40.0% |
| !!! | GGGTCTGGTCTTTTGATTTT+GGG | + | chr1_4:63708352-63708371 | Msa0177000:intron | 40.0% |
| ! | ATGGACAATGGATTTGAGGA+TGG | + | chr1_4:63708631-63708650 | Msa0177000:intron | 40.0% |
| ACAAGCAGCTTCTGATATGA+TGG | + | chr1_4:63708654-63708673 | Msa0177000:intron | 40.0% | |
| GCAGTCAACAGAGGAAAAAA+AGG | + | chr1_4:63708680-63708699 | Msa0177000:intron | 40.0% | |
| AATCACTGTGAAAGTGAGAG+TGG | - | chr1_4:63708788-63708807 | None:intergenic | 40.0% | |
| ATCAAGGACTCCCAAATCAA+AGG | - | chr1_4:63708887-63708906 | None:intergenic | 40.0% | |
| TCAAATGTACCGTCGAATTC+AGG | + | chr1_4:63709258-63709277 | Msa0177000:CDS | 40.0% | |
| TAGCAACTCTATGGAGTCAT+TGG | + | chr1_4:63709536-63709555 | Msa0177000:intron | 40.0% | |
| TAGCCATAACCTGCAATTGT+TGG | + | chr1_4:63709561-63709580 | Msa0177000:intron | 40.0% | |
| CTTCCAACAATTGCAGGTTA+TGG | - | chr1_4:63709567-63709586 | None:intergenic | 40.0% | |
| CATAACCTGCAATTGTTGGA+AGG | + | chr1_4:63709565-63709584 | Msa0177000:CDS | 40.0% | |
| TCATACCTTCCAACAATTGC+AGG | - | chr1_4:63709573-63709592 | None:intergenic | 40.0% | |
| ! | GCAATTGTTGGAAGGTATGA+TGG | + | chr1_4:63709573-63709592 | Msa0177000:intron | 40.0% |
| ! | TTGGGTATCTGCTTCTTTTG+AGG | + | chr1_4:63709914-63709933 | Msa0177000:intron | 40.0% |
| ACTGGTAGGTGTTTGGAAAT+GGG | + | chr1_4:63710262-63710281 | Msa0177000:intron | 40.0% | |
| !!! | CTGCTTTCCTTTTTGGAATG+AGG | + | chr1_4:63710394-63710413 | Msa0177000:intron | 40.0% |
| ! | CTTGGTGCACAAGATTTGTT+TGG | + | chr1_4:63710420-63710439 | Msa0177000:intron | 40.0% |
| GAAATCTAGGGAAATCTTGG+TGG | + | chr1_4:63710727-63710746 | Msa0177000:intron | 40.0% | |
| !!! | CGCCAACTTTTTTCTTCCTT+AGG | - | chr1_4:63711112-63711131 | None:intergenic | 40.0% |
| ATGATGAGAAAGAACTGCCT+CGG | - | chr1_4:63711387-63711406 | None:intergenic | 40.0% | |
| CAGATCTTCACCTAATCCAA+AGG | - | chr1_4:63711423-63711442 | None:intergenic | 40.0% | |
| ! | CTTTGGATTAGGTGAAGATC+TGG | + | chr1_4:63711421-63711440 | Msa0177000:intron | 40.0% |
| !!! | GCACTGATTTTGTACACTAG+CGG | + | chr1_4:63711443-63711462 | Msa0177000:CDS | 40.0% |
| !!! | CACTGATTTTGTACACTAGC+GGG | + | chr1_4:63711444-63711463 | Msa0177000:CDS | 40.0% |
| GGCTTCTTAATGCAACATGT+GGG | + | chr1_4:63711701-63711720 | Msa0177000:CDS | 40.0% | |
| GCACAAGAAGAAGGTTTGAA+AGG | - | chr1_4:63711809-63711828 | None:intergenic | 40.0% | |
| TCAAACCTTCTTCTTGTGCT+TGG | + | chr1_4:63711810-63711829 | Msa0177000:intron | 40.0% | |
| AAGTTCCAAGCACAAGAAGA+AGG | - | chr1_4:63711818-63711837 | None:intergenic | 40.0% | |
| !! | CATATTTTTGCTCCACTCCA+AGG | - | chr1_4:63711866-63711885 | None:intergenic | 40.0% |
| GAAATCTATCAGCGTTCCTA+CGG | + | chr1_4:63712039-63712058 | Msa0177000:intron | 40.0% | |
| GTAGAAAAATGTGTGTGTGC+TGG | + | chr1_4:63712109-63712128 | Msa0177000:intron | 40.0% | |
| GCGTGTATATTCTTAAGAGC+TGG | + | chr1_4:63712487-63712506 | Msa0177000:three_prime_UTR | 40.0% | |
| TGGCAATGAACCTTTCCTTA+AGG | - | chr1_4:63712545-63712564 | None:intergenic | 40.0% | |
| ATGTTCTTCAGAGCTGGGTA+TGG | - | chr1_4:63707820-63707839 | None:intergenic | 45.0% | |
| GAACATTATCAGGATCGGTG+AGG | + | chr1_4:63707834-63707853 | Msa0177000:intron | 45.0% | |
| TGTGAAAGTGAGAGTGGTGA+TGG | - | chr1_4:63708782-63708801 | None:intergenic | 45.0% | |
| ATCAGACATACCCTTAGGGA+TGG | + | chr1_4:63709197-63709216 | Msa0177000:intron | 45.0% | |
| CTCAAGACCTGATGTTGTTG+TGG | + | chr1_4:63709854-63709873 | Msa0177000:CDS | 45.0% | |
| AGACCTGATGTTGTTGTGGT+AGG | + | chr1_4:63709858-63709877 | Msa0177000:intron | 45.0% | |
| ACTCCTACCACAACAACATC+AGG | - | chr1_4:63709864-63709883 | None:intergenic | 45.0% | |
| ! | CTCTTTTGTGACCAATGCCT+AGG | - | chr1_4:63710049-63710068 | None:intergenic | 45.0% |
| ATTAGTACATCACGCACGCA+AGG | - | chr1_4:63710150-63710169 | None:intergenic | 45.0% | |
| TTGCGTGCGTGATGTACTAA+TGG | + | chr1_4:63710149-63710168 | Msa0177000:intron | 45.0% | |
| TGCGTGCGTGATGTACTAAT+GGG | + | chr1_4:63710150-63710169 | Msa0177000:intron | 45.0% | |
| TGTATGGATGTGGTTCTTGC+AGG | + | chr1_4:63710210-63710229 | Msa0177000:intron | 45.0% | |
| GTATGGATGTGGTTCTTGCA+GGG | + | chr1_4:63710211-63710230 | Msa0177000:intron | 45.0% | |
| TATGGATGTGGTTCTTGCAG+GGG | + | chr1_4:63710212-63710231 | Msa0177000:intron | 45.0% | |
| GACTGGTAGGTGTTTGGAAA+TGG | + | chr1_4:63710261-63710280 | Msa0177000:intron | 45.0% | |
| AATCTTGGTGGAGCTCGAAT+AGG | + | chr1_4:63710739-63710758 | Msa0177000:CDS | 45.0% | |
| CCAGCAACAAATTCAGCAGA+CGG | - | chr1_4:63710778-63710797 | None:intergenic | 45.0% | |
| !! | ATACTCGCGACTTGGTTTAG+TGG | + | chr1_4:63710799-63710818 | Msa0177000:CDS | 45.0% |
| ! | ATCTCCGTATCAGTTTTCCG+AGG | + | chr1_4:63711367-63711386 | Msa0177000:intron | 45.0% |
| ACTGCCTCGGAAAACTGATA+CGG | - | chr1_4:63711374-63711393 | None:intergenic | 45.0% | |
| GGGCTTCTTAATGCAACATG+TGG | + | chr1_4:63711700-63711719 | Msa0177000:CDS | 45.0% | |
| CTTGGAACTTCCCTACTTTG+TGG | + | chr1_4:63711828-63711847 | Msa0177000:intron | 45.0% | |
| TGCAATGCCACCACAAAGTA+GGG | - | chr1_4:63711841-63711860 | None:intergenic | 45.0% | |
| TTGCAATGCCACCACAAAGT+AGG | - | chr1_4:63711842-63711861 | None:intergenic | 45.0% | |
| GCAGAAACATCCATGTTCTC+AGG | - | chr1_4:63712010-63712029 | None:intergenic | 45.0% | |
| ATTCAAGCAGTACGGATCAG+AGG | - | chr1_4:63712458-63712477 | None:intergenic | 45.0% | |
| AGAGCTGGTAGAGTGTACAT+TGG | + | chr1_4:63712502-63712521 | Msa0177000:three_prime_UTR | 45.0% | |
| !!! | AATTAGATATTATTTTTTTT+AGG | + | chr1_4:63709384-63709403 | Msa0177000:intron | 5.0% |
| TTCTTCAGAGCTGGGTATGG+CGG | - | chr1_4:63707817-63707836 | None:intergenic | 50.0% | |
| TGATGGCAAGCAGTCAACAG+AGG | + | chr1_4:63708671-63708690 | Msa0177000:intron | 50.0% | |
| !! | GAAAGTGAGAGTGGTGATGG+AGG | - | chr1_4:63708779-63708798 | None:intergenic | 50.0% |
| GACATACCCTTAGGGATGGA+TGG | + | chr1_4:63709201-63709220 | Msa0177000:intron | 50.0% | |
| TACCCTTAGGGATGGATGGA+TGG | + | chr1_4:63709205-63709224 | Msa0177000:CDS | 50.0% | |
| AGCCATCCATCCATCCCTAA+GGG | - | chr1_4:63709210-63709229 | None:intergenic | 50.0% | |
| AAGCCATCCATCCATCCCTA+AGG | - | chr1_4:63709211-63709230 | None:intergenic | 50.0% | |
| ! | TTTGAGGACACTGCTGCTTC+AGG | + | chr1_4:63709465-63709484 | Msa0177000:CDS | 50.0% |
| TGCAGCAGATCCTAAGTTGC+TGG | + | chr1_4:63709988-63710007 | Msa0177000:CDS | 50.0% | |
| GCGTGCGTGATGTACTAATG+GGG | + | chr1_4:63710151-63710170 | Msa0177000:intron | 50.0% | |
| GCTTTGGCAATCACCAATCC+TGG | + | chr1_4:63710239-63710258 | Msa0177000:CDS | 50.0% | |
| !! | ATCACCAATCCTGGACTGGT+AGG | + | chr1_4:63710248-63710267 | Msa0177000:intron | 50.0% |
| AACACCTACCAGTCCAGGAT+TGG | - | chr1_4:63710255-63710274 | None:intergenic | 50.0% | |
| !! | ATCCTGGACTGGTAGGTGTT+TGG | + | chr1_4:63710255-63710274 | Msa0177000:intron | 50.0% |
| TTCCAAACACCTACCAGTCC+AGG | - | chr1_4:63710260-63710279 | None:intergenic | 50.0% | |
| !! | CCGTCTGCTGAATTTGTTGC+TGG | + | chr1_4:63710775-63710794 | Msa0177000:CDS | 50.0% |
| TTGCTGGAATACTCGCGACT+TGG | + | chr1_4:63710791-63710810 | Msa0177000:CDS | 50.0% | |
| TCTGCATAGCTGAGTGCAAG+TGG | - | chr1_4:63710838-63710857 | None:intergenic | 50.0% | |
| TTGTACACTAGCGGGACAAC+AGG | + | chr1_4:63711452-63711471 | Msa0177000:CDS | 50.0% | |
| GTCTTCTTCACTGGTCCTAC+AGG | + | chr1_4:63711535-63711554 | Msa0177000:CDS | 50.0% | |
| GGAACTTCCCTACTTTGTGG+TGG | + | chr1_4:63711831-63711850 | Msa0177000:intron | 50.0% | |
| TGTGGTGGCATTGCAAACCT+TGG | + | chr1_4:63711846-63711865 | Msa0177000:intron | 50.0% | |
| TGGCATTGCAAACCTTGGAG+TGG | + | chr1_4:63711851-63711870 | Msa0177000:intron | 50.0% | |
| GACGAACATGGACATACCGT+AGG | - | chr1_4:63712058-63712077 | None:intergenic | 50.0% | |
| GTAACACCGTACCTGCACCT+AGG | + | chr1_4:63710029-63710048 | Msa0177000:CDS | 55.0% | |
| CCAATGCCTAGGTGCAGGTA+CGG | - | chr1_4:63710038-63710057 | None:intergenic | 55.0% | |
| TGTGACCAATGCCTAGGTGC+AGG | - | chr1_4:63710043-63710062 | None:intergenic | 55.0% | |
| ATGTGGTTCTTGCAGGGGAG+CGG | + | chr1_4:63710217-63710236 | Msa0177000:intron | 55.0% | |
| GGCAATCACCAATCCTGGAC+TGG | + | chr1_4:63710244-63710263 | Msa0177000:CDS | 55.0% | |
| !! | CTCGCGACTTGGTTTAGTGG+AGG | + | chr1_4:63710802-63710821 | Msa0177000:CDS | 55.0% |
| AGTACGGATCAGAGGACTGG+GGG | - | chr1_4:63712450-63712469 | None:intergenic | 55.0% | |
| CAGTACGGATCAGAGGACTG+GGG | - | chr1_4:63712451-63712470 | None:intergenic | 55.0% | |
| GCAGTACGGATCAGAGGACT+GGG | - | chr1_4:63712452-63712471 | None:intergenic | 55.0% | |
| AGCAGTACGGATCAGAGGAC+TGG | - | chr1_4:63712453-63712472 | None:intergenic | 55.0% | |
| CGGCGGTGAGAAGAAGATCG+CGG | - | chr1_4:63707781-63707800 | None:intergenic | 60.0% | |
| ! | AGAGCTGGGTATGGCGGAGA+CGG | - | chr1_4:63707811-63707830 | None:intergenic | 60.0% |
| CCGTACCTGCACCTAGGCAT+TGG | + | chr1_4:63710035-63710054 | Msa0177000:CDS | 60.0% | |
| TTCTTGCAGGGGAGCGGCTT+TGG | + | chr1_4:63710223-63710242 | Msa0177000:intron | 60.0% | |
| GTACGGATCAGAGGACTGGG+GGG | - | chr1_4:63712449-63712468 | None:intergenic | 60.0% | |
| ! | ATGGCGGAGACGGCGAGGTA+CGG | - | chr1_4:63707801-63707820 | None:intergenic | 65.0% |
| ! | TGGGTATGGCGGAGACGGCG+AGG | - | chr1_4:63707806-63707825 | None:intergenic | 70.0% |
| GCGGAGACGGCGAGGTACGG+CGG | - | chr1_4:63707798-63707817 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 63707718 | 63712676 | 63707718 | ID=Msa0177000;Name=Msa0177000 |
| chr1_4 | mRNA | 63707718 | 63712676 | 63707718 | ID=Msa0177000-mRNA-1;Parent=Msa0177000;Name=Msa0177000-mRNA-1;_AED=0.27;_eAED=0.27;_QI=45|0.45|0.66|1|1|1|12|237|341 |
| chr1_4 | exon | 63707718 | 63707850 | 63707718 | ID=Msa0177000-mRNA-1:exon:20663;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63709202 | 63709279 | 63709202 | ID=Msa0177000-mRNA-1:exon:20664;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63709406 | 63709486 | 63709406 | ID=Msa0177000-mRNA-1:exon:20665;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63709564 | 63709586 | 63709564 | ID=Msa0177000-mRNA-1:exon:20666;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63709786 | 63709875 | 63709786 | ID=Msa0177000-mRNA-1:exon:20667;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63709974 | 63710056 | 63709974 | ID=Msa0177000-mRNA-1:exon:20668;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63710232 | 63710265 | 63710232 | ID=Msa0177000-mRNA-1:exon:20669;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63710736 | 63710888 | 63710736 | ID=Msa0177000-mRNA-1:exon:20670;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63711248 | 63711320 | 63711248 | ID=Msa0177000-mRNA-1:exon:20671;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63711432 | 63711556 | 63711432 | ID=Msa0177000-mRNA-1:exon:20672;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63711664 | 63711780 | 63711664 | ID=Msa0177000-mRNA-1:exon:20673;Parent=Msa0177000-mRNA-1 |
| chr1_4 | exon | 63712359 | 63712676 | 63712359 | ID=Msa0177000-mRNA-1:exon:20674;Parent=Msa0177000-mRNA-1 |
| chr1_4 | five_prime_UTR | 63707718 | 63707762 | 63707718 | ID=Msa0177000-mRNA-1:five_prime_utr;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63707763 | 63707850 | 63707763 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63709202 | 63709279 | 63709202 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63709406 | 63709486 | 63709406 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63709564 | 63709586 | 63709564 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63709786 | 63709875 | 63709786 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63709974 | 63710056 | 63709974 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63710232 | 63710265 | 63710232 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63710736 | 63710888 | 63710736 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63711248 | 63711320 | 63711248 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63711432 | 63711556 | 63711432 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63711664 | 63711780 | 63711664 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | CDS | 63712359 | 63712439 | 63712359 | ID=Msa0177000-mRNA-1:cds;Parent=Msa0177000-mRNA-1 |
| chr1_4 | three_prime_UTR | 63712440 | 63712676 | 63712440 | ID=Msa0177000-mRNA-1:three_prime_utr;Parent=Msa0177000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
