AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194990 MtrunA17_Chr2g0286191 76.149 348 81 1 32 377 16 363 0.0 528
Msa0194990 MtrunA17_Chr2g0286221 87.283 173 22 0 215 387 11 183 6.50e-104 310
Msa0194990 MtrunA17_Chr4g0067121 46.110 347 182 4 40 383 46 390 1.60e-101 311
Msa0194990 MtrunA17_Chr2g0295731 45.217 345 183 4 33 373 35 377 6.67e-96 296
Msa0194990 MtrunA17_Chr2g0296121 44.798 346 185 4 36 377 117 460 1.37e-92 291
Msa0194990 MtrunA17_Chr2g0295741 41.327 392 205 7 1 378 1 381 2.34e-92 288
Msa0194990 MtrunA17_Chr2g0295761 44.737 342 184 4 38 376 53 392 1.31e-87 275
Msa0194990 MtrunA17_Chr2g0296151 43.666 371 194 6 17 378 11 375 2.03e-87 275
Msa0194990 MtrunA17_Chr2g0296111 43.143 350 194 4 37 382 31 379 1.17e-83 265
Msa0194990 MtrunA17_Chr2g0296301 38.753 369 220 4 20 386 15 379 2.03e-80 257
Msa0194990 MtrunA17_Chr2g0296711 42.690 342 185 7 45 378 53 391 8.98e-80 256
Msa0194990 MtrunA17_Chr2g0296721 39.487 390 209 7 9 378 5 387 2.49e-77 249
Msa0194990 MtrunA17_Chr2g0315731 39.691 388 216 7 9 380 25 410 4.36e-76 246
Msa0194990 MtrunA17_Chr2g0296291 38.660 388 183 7 37 378 25 403 2.86e-74 241
Msa0194990 MtrunA17_Chr2g0296741 38.083 386 221 6 9 378 25 408 1.98e-73 239
Msa0194990 MtrunA17_Chr2g0296251 38.235 408 199 8 7 373 3 398 6.88e-73 238
Msa0194990 MtrunA17_Chr2g0296171 42.029 345 179 7 45 375 60 397 7.32e-72 235
Msa0194990 MtrunA17_Chr2g0296221 41.429 350 184 7 38 373 72 414 1.39e-71 235
Msa0194990 MtrunA17_Chr4g0067671 38.753 369 199 8 1 356 1 355 2.23e-70 229
Msa0194990 MtrunA17_Chr2g0296191 41.071 336 192 5 40 372 177 509 2.48e-70 244
Msa0194990 MtrunA17_Chr2g0296191 40.230 348 185 7 38 370 655 994 2.76e-64 226
Msa0194990 MtrunA17_Chr2g0296231 41.369 336 186 7 45 373 49 380 1.37e-69 229
Msa0194990 MtrunA17_Chr4g0067141 38.323 334 202 3 40 371 39 370 9.87e-66 218
Msa0194990 MtrunA17_Chr2g0296181 38.810 353 182 6 34 380 40 364 1.20e-65 218
Msa0194990 MtrunA17_Chr4g0001831 37.574 338 204 4 43 374 35 371 2.99e-63 211
Msa0194990 MtrunA17_Chr2g0296551 45.355 183 94 4 194 373 5 184 1.45e-40 145
Msa0194990 MtrunA17_Chr2g0296701 50.000 160 78 2 221 378 2 161 3.09e-40 144
Msa0194990 MtrunA17_Chr2g0296211 36.626 243 137 4 155 380 123 365 9.17e-40 148
Msa0194990 MtrunA17_Chr2g0296161 48.718 156 78 2 220 373 3 158 5.21e-38 137
Msa0194990 MtrunA17_Chr2g0296131 46.358 151 79 2 224 372 11 161 4.98e-37 135
Msa0194990 MtrunA17_Chr8g0377781 30.473 338 227 5 36 367 33 368 8.83e-35 134
Msa0194990 MtrunA17_Chr2g0296751 50.758 132 64 1 248 378 3 134 2.42e-34 127
Msa0194990 MtrunA17_Chr2g0295711 41.358 162 93 1 33 192 34 195 1.25e-33 127
Msa0194990 MtrunA17_Chr8g0377801 27.273 341 242 5 36 371 46 385 1.00e-30 124
Msa0194990 MtrunA17_Chr2g0295751 41.818 165 78 3 10 172 28 176 2.68e-30 124
Msa0194990 MtrunA17_Chr2g0295721 49.573 117 58 1 220 335 3 119 4.31e-30 114
Msa0194990 MtrunA17_Chr2g0296561 41.844 141 77 2 7 147 3 138 1.10e-22 94.7
Msa0194990 MtrunA17_Chr2g0287121 86.957 46 6 0 388 433 285 330 6.62e-18 85.9
Msa0194990 MtrunA17_Chr1g0212271 71.111 45 13 0 391 435 55 99 6.79e-17 78.2
Msa0194990 MtrunA17_Chr2g0287141 70.000 50 15 0 386 435 123 172 2.60e-16 78.2
Msa0194990 MtrunA17_Chr4g0067131 46.914 81 42 1 290 369 1 81 2.65e-16 74.3
Msa0194990 MtrunA17_Chr2g0287191 61.702 47 18 0 389 435 23 69 1.46e-13 67.4
Msa0194990 MtrunA17_Chr6g0472521 66.667 42 14 0 392 433 4 45 1.74e-13 65.9
Msa0194990 MtrunA17_Chr2g0292331 69.048 42 13 0 392 433 319 360 6.85e-13 70.5
Msa0194990 MtrunA17_Chr1g0212281 68.182 44 14 0 388 431 303 346 6.94e-13 70.5
Msa0194990 MtrunA17_Chr7g0215491 60.000 45 17 1 389 433 15 58 1.19e-12 64.3
Msa0194990 MtrunA17_Chr3g0121331 59.091 44 18 0 392 435 105 148 3.31e-12 65.9
Msa0194990 MtrunA17_Chr3g0080211 64.286 42 15 0 392 433 4 45 9.92e-12 61.6
Msa0194990 MtrunA17_Chr5g0409301 58.333 48 19 1 389 435 39 86 1.47e-11 62.0
Msa0194990 MtrunA17_Chr7g0228911 66.667 42 14 0 392 433 300 341 2.16e-11 65.9
Msa0194990 MtrunA17_Chr2g0317101 69.048 42 13 0 392 433 294 335 2.98e-11 65.1
Msa0194990 MtrunA17_Chr3g0078181 65.217 46 16 0 388 433 297 342 3.09e-11 65.5
Msa0194990 MtrunA17_Chr3g0086941 64.286 42 15 0 392 433 104 145 5.31e-11 62.0
Msa0194990 MtrunA17_Chr6g0453851 38.835 103 56 2 337 435 243 342 5.48e-11 64.7
Msa0194990 MtrunA17_Chr2g0287091 60.784 51 15 1 388 433 126 176 5.93e-11 62.4
Msa0194990 MtrunA17_Chr6g0454491 63.636 44 16 0 392 435 294 337 6.13e-11 64.3
Msa0194990 MtrunA17_Chr1g0212221 50.000 62 17 2 391 452 277 324 7.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194990 AT5G07900.1 38.304 342 203 4 36 370 59 399 4.18e-76 246
Msa0194990 AT1G21150.1 34.835 333 211 3 42 368 52 384 1.46e-59 202
Msa0194990 AT1G21150.2 34.835 333 211 3 42 368 116 448 6.40e-59 202
Msa0194990 AT1G21150.3 34.111 343 216 4 32 368 10 348 2.60e-58 198
Msa0194990 AT1G61970.2 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61970.7 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61970.6 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61970.3 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61970.5 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61970.4 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61970.1 30.458 371 211 9 43 370 49 415 2.86e-46 167
Msa0194990 AT1G61980.3 30.189 371 212 9 43 370 49 415 3.83e-44 162
Msa0194990 AT1G61980.2 30.189 371 212 9 43 370 49 415 3.83e-44 162
Msa0194990 AT1G61980.1 30.189 371 212 9 43 370 49 415 3.83e-44 162
Msa0194990 AT3G46950.1 28.438 429 221 11 21 370 23 444 7.56e-43 159
Msa0194990 AT1G62120.1 30.588 340 191 5 38 336 48 383 2.62e-42 157
Msa0194990 AT1G61990.2 30.163 368 209 8 43 370 49 408 2.64e-42 157
Msa0194990 AT1G61990.1 30.163 368 209 8 43 370 49 408 2.64e-42 157
Msa0194990 AT1G62085.1 32.597 362 168 10 46 333 55 414 4.26e-41 154
Msa0194990 AT1G62085.2 32.597 362 168 10 46 333 55 414 4.26e-41 154
Msa0194990 AT1G61960.1 35.857 251 152 6 41 286 47 293 8.71e-38 145
Msa0194990 AT1G62110.1 28.061 392 195 8 47 356 53 439 3.37e-36 140
Msa0194990 AT1G62010.1 29.429 333 184 7 41 336 43 361 1.85e-35 137
Msa0194990 AT5G23930.1 30.769 390 184 9 43 356 52 431 5.07e-35 137
Msa0194990 AT1G62150.1 25.971 412 224 9 41 374 53 461 3.19e-34 135
Msa0194990 AT5G64950.1 27.476 313 213 6 72 371 65 376 8.60e-25 107
Msa0194990 AT1G56380.1 24.079 353 224 6 47 356 17 368 2.32e-21 96.7
Msa0194990 AT1G56380.2 24.079 353 224 6 47 356 28 379 2.63e-21 96.7
Msa0194990 AT1G79220.1 28.000 300 175 10 82 376 119 382 2.76e-15 78.6

Find 101 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAAGATAGCAGGATTTC+TGG 0.169200 2_1:-11594158 None:intergenic
AAAACAAACACTCAGAAATT+TGG 0.172074 2_1:-11594783 None:intergenic
ATTCAAATCCTGCTTCAAAA+TGG 0.214854 2_1:+11594310 Msa0194990:CDS
GAGAGTTTGGAAGCAGTTTC+TGG 0.219164 2_1:-11593929 None:intergenic
CCTCTACGTGTATACTTTCT+AGG 0.228711 2_1:-11598494 None:intergenic
TTTGATTAAGGATGCTAAAT+TGG 0.230774 2_1:+11594750 Msa0194990:CDS
GAAACTGAATGTGAGGTTAT+TGG 0.264454 2_1:-11593786 None:intergenic
TGAGAGAAGAAAATTGAGTT+TGG 0.273951 2_1:-11594098 None:intergenic
GTTTGGCTTATGAAGGAATA+TGG 0.276457 2_1:+11595872 Msa0194990:CDS
AACTATCTCATTCAAAATCT+TGG 0.280256 2_1:+11593899 Msa0194990:CDS
ATGAAGATTGTGTTACTGTT+AGG 0.281001 2_1:-11593814 None:intergenic
AACAATGAAAACAGTTGTTT+TGG 0.284531 2_1:-11594446 None:intergenic
TGGTTGTGAAAGTGTGATTT+TGG 0.286388 2_1:-11593877 None:intergenic
ACCAATTTCGAAACAAAATA+AGG 0.302219 2_1:-11594351 None:intergenic
GCAAAGAAGCAGGAGGAAAA+AGG 0.314178 2_1:-11597758 None:intergenic
AAACTGAATGTGAGGTTATT+GGG 0.314801 2_1:-11593785 None:intergenic
GTGATACTTCTTCAGATGTT+TGG 0.318377 2_1:+11595855 Msa0194990:intron
TTGGTGGAAGTAAATGAATT+AGG 0.343678 2_1:+11594415 Msa0194990:CDS
TTCAAATCCTGCTTCAAAAT+GGG 0.347056 2_1:+11594311 Msa0194990:CDS
CGACTCTTTCCGAGCGGGCC+TGG 0.349548 2_1:+11597710 Msa0194990:CDS
AATATGGAAATAAAGATTCT+TGG 0.353037 2_1:+11595888 Msa0194990:CDS
AAAATTGAGTTTGGGAAGAA+TGG 0.364283 2_1:-11594089 None:intergenic
TTGAAATTTCTTGAGTCTAA+AGG 0.377057 2_1:+11594727 Msa0194990:CDS
GATTGATGTGTATAAGAAAT+GGG 0.377187 2_1:+11594513 Msa0194990:CDS
TGAGTCTAAAGGTTTGATTA+AGG 0.378829 2_1:+11594738 Msa0194990:CDS
AGATTGATGTGTATAAGAAA+TGG 0.401224 2_1:+11594512 Msa0194990:CDS
AATAATGAAAGGACTGAGTC+TGG 0.403254 2_1:-11593983 None:intergenic
GTCCACACCTGTACACTCTA+AGG 0.409829 2_1:+11598391 Msa0194990:CDS
GAGAGAAGAAAATTGAGTTT+GGG 0.413372 2_1:-11594097 None:intergenic
GCTGCTCTTCGTCATGCTGC+TGG 0.417285 2_1:+11597779 Msa0194990:CDS
ATTAAGGATGCTAAATTGGC+TGG 0.417571 2_1:+11594754 Msa0194990:CDS
TTGGGGAGATGAAGAAGAAA+AGG 0.419196 2_1:-11593858 None:intergenic
TTCAGATGTTTGGCTTATGA+AGG 0.420224 2_1:+11595865 Msa0194990:CDS
TGAAGATTGTGTTACTGTTA+GGG 0.420451 2_1:-11593813 None:intergenic
TTTGATGAGAGTTGATAGCT+GGG 0.426496 2_1:-11594029 None:intergenic
TTTGCTGAGTCTTGAGAAAA+GGG 0.428056 2_1:+11594684 Msa0194990:CDS
GACTCAGCAAAAGAAGTATT+GGG 0.431337 2_1:-11594672 None:intergenic
GCTGCTGGTCCGCTCTCTGC+TGG 0.433259 2_1:+11597794 Msa0194990:CDS
CTGCTTCATCTTCAATTCGA+AGG 0.433473 2_1:+11598432 Msa0194990:CDS
AGACTCAGCAAAAGAAGTAT+TGG 0.433507 2_1:-11594673 None:intergenic
AATGCCTTCTCAAATCTTGA+AGG 0.433670 2_1:-11594394 None:intergenic
TGCTTCATCTTCAATTCGAA+GGG 0.435069 2_1:+11598433 Msa0194990:CDS
AAAAGGAGGAAAGGTAAGGA+AGG 0.438467 2_1:+11598568 Msa0194990:CDS
TGGGGAGATGAAGAAGAAAA+GGG 0.465462 2_1:-11593857 None:intergenic
ATTGTTATGTGTTCCTTACA+TGG 0.472360 2_1:+11595916 Msa0194990:CDS
GGATTCATTGTGGAGTTTCA+CGG 0.474772 2_1:+11597731 Msa0194990:CDS
ACGAAGAGCAGCAAAGAAGC+AGG 0.504913 2_1:-11597768 None:intergenic
GTATTTGTGCCGGGAAGAAA+AGG 0.507804 2_1:+11598551 Msa0194990:CDS
GTTCCTTACATGGGAGATGT+TGG 0.507865 2_1:+11595926 Msa0194990:CDS
GAAGTTTGTGTATTGCTTCG+AGG 0.509974 2_1:+11594810 Msa0194990:CDS
TGCTGCGACTCTTTCCGAGC+GGG 0.514284 2_1:+11597705 Msa0194990:CDS
TGAAACTCCACAATGAATCC+AGG 0.514992 2_1:-11597728 None:intergenic
TTCAAGATTTGAGAAGGCAT+TGG 0.516289 2_1:+11594396 Msa0194990:CDS
TTCCTTACATGGGAGATGTT+GGG 0.521607 2_1:+11595927 Msa0194990:CDS
GACCCAACATCTCCCATGTA+AGG 0.523350 2_1:-11595929 None:intergenic
GGCATCTGTTCGTAAAATTG+AGG 0.523840 2_1:+11594591 Msa0194990:CDS
CTTTCATTATTCAAATCACA+TGG 0.524934 2_1:+11593995 Msa0194990:CDS
TACTTTCTAGGAAGAGTAGC+AGG 0.526035 2_1:-11598482 None:intergenic
AATGAGGGTCTCAGAGAAGC+TGG 0.526173 2_1:+11598364 Msa0194990:intron
AAGATTTGAGAAGGCATTGG+TGG 0.528058 2_1:+11594399 Msa0194990:CDS
AAAGGTAAGGAAGGGCATCT+AGG 0.534777 2_1:+11598577 Msa0194990:CDS
AAAGTATACACGTAGAGGCT+TGG 0.536780 2_1:+11598499 Msa0194990:CDS
GAGATGAAGAAGAAAAGGGT+TGG 0.538838 2_1:-11593853 None:intergenic
TCAAATCCTGCTTCAAAATG+GGG 0.541281 2_1:+11594312 Msa0194990:CDS
GATAGAACCTTAGAGTGTAC+AGG 0.542336 2_1:-11598398 None:intergenic
GAAGAAAAGGAGGAAAGGTA+AGG 0.546052 2_1:+11598564 Msa0194990:CDS
CTCAGTAAGATAAAGTGCCT+TGG 0.552845 2_1:-11595963 None:intergenic
TTGTTATGTGTTCCTTACAT+GGG 0.561059 2_1:+11595917 Msa0194990:CDS
GAAGTATCCATGGTGTATGT+TGG 0.562557 2_1:+11594570 Msa0194990:CDS
AAAGGAGGAAAGGTAAGGAA+GGG 0.563721 2_1:+11598569 Msa0194990:CDS
GAGCGGGCCTGGATTCATTG+TGG 0.569080 2_1:+11597721 Msa0194990:CDS
AACTGAATGTGAGGTTATTG+GGG 0.569321 2_1:-11593784 None:intergenic
CATCAATCTTCCTTTCCCAA+AGG 0.572836 2_1:-11594498 None:intergenic
AGATAGAAGAGTATTTGTGC+CGG 0.573160 2_1:+11598541 Msa0194990:CDS
GATAGAAGAGTATTTGTGCC+GGG 0.580180 2_1:+11598542 Msa0194990:CDS
TTTGATAAAATGATAACAAG+GGG 0.581767 2_1:-11594203 None:intergenic
CATGTGATTTGAATAATGAA+AGG 0.586958 2_1:-11593994 None:intergenic
TTCTGGTGATGATTTGAACA+AGG 0.591029 2_1:-11594141 None:intergenic
AATTTCAAGACAAAAGCTCT+AGG 0.592288 2_1:-11594712 None:intergenic
CACAAATACTCTTCTATCTG+CGG 0.598706 2_1:-11598537 None:intergenic
AGAGGCTTGGCGTCAATGAG+AGG 0.601015 2_1:+11598512 Msa0194990:CDS
GAAGCCTTCAAGATTTGAGA+AGG 0.601085 2_1:+11594390 Msa0194990:CDS
AACCTTAGAGTGTACAGGTG+TGG 0.615324 2_1:-11598393 None:intergenic
CCTAGAAAGTATACACGTAG+AGG 0.622996 2_1:+11598494 Msa0194990:CDS
AAACACTCAGAAATTTGGAA+AGG 0.625518 2_1:-11594778 None:intergenic
AAGAGCAGCAAAGAAGCAGG+AGG 0.626716 2_1:-11597765 None:intergenic
GCTTCATCTTCAATTCGAAG+GGG 0.627576 2_1:+11598434 Msa0194990:CDS
AAAATAAGGACTTTAGACTC+AGG 0.629406 2_1:-11594337 None:intergenic
ACAATGAATCCAGGCCCGCT+CGG 0.636577 2_1:-11597719 None:intergenic
CAAGGCACTTTATCTTACTG+AGG 0.645344 2_1:+11595964 Msa0194990:CDS
ATTGATGTGTATAAGAAATG+GGG 0.652614 2_1:+11594514 Msa0194990:CDS
GCCGGGAAGAAAAGGAGGAA+AGG 0.658259 2_1:+11598559 Msa0194990:CDS
GGGAAAATACCAGCAGAGAG+CGG 0.666547 2_1:-11597803 None:intergenic
TCGAATTGAAGATGAAGCAG+CGG 0.670732 2_1:-11598429 None:intergenic
ACAGATGCCAACATACACCA+TGG 0.670800 2_1:-11594577 None:intergenic
GATTTGAATATTCTGAGACG+TGG 0.672392 2_1:-11594296 None:intergenic
TTTGTGCCGGGAAGAAAAGG+AGG 0.683202 2_1:+11598554 Msa0194990:CDS
ATGTGTATAAGAAATGGGGT+TGG 0.700509 2_1:+11594518 Msa0194990:CDS
TGGGTCGTATCTTTATACCA+AGG 0.701695 2_1:+11595946 Msa0194990:CDS
TTTCTAGGAAGAGTAGCAGG+TGG 0.728231 2_1:-11598479 None:intergenic
TTGCTGCGACTCTTTCCGAG+CGG 0.739548 2_1:+11597704 Msa0194990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATAAAAAAATCCTT+TGG + chr2_1:11594482-11594501 Msa0194990:CDS 10.0%
!! AATTAATAAAAAAATCCTTT+GGG + chr2_1:11594483-11594502 Msa0194990:CDS 10.0%
!!! TTTTGATAAAATGATAACAA+GGG - chr2_1:11594207-11594226 None:intergenic 15.0%
!!! TCAAAGTATAAATAATTTGT+AGG + chr2_1:11597127-11597146 Msa0194990:intron 15.0%
!! AATTATATTTCAATACTTAC+TGG + chr2_1:11597320-11597339 Msa0194990:intron 15.0%
!!! AAAATAAATTGGTGTTTTTA+TGG + chr2_1:11598067-11598086 Msa0194990:intron 15.0%
!! AAAAAAAAAAAATGCAACAA+TGG + chr2_1:11598329-11598348 Msa0194990:intron 15.0%
!! TTTGATAAAATGATAACAAG+GGG - chr2_1:11594206-11594225 None:intergenic 20.0%
!!! CTTTTGATAAAATGATAACA+AGG - chr2_1:11594208-11594227 None:intergenic 20.0%
!!! GAAACATGAGTTATTTATTT+TGG + chr2_1:11595413-11595432 Msa0194990:intron 20.0%
!!! AAGATGTCATATTTTTTATG+AGG - chr2_1:11595793-11595812 None:intergenic 20.0%
!! AAAAATATGACATCTTGATT+TGG + chr2_1:11595797-11595816 Msa0194990:intron 20.0%
!! AATATGGAAATAAAGATTCT+TGG + chr2_1:11595888-11595907 Msa0194990:CDS 20.0%
!! CTGAAATTCAAAACATTAAT+GGG + chr2_1:11596060-11596079 Msa0194990:intron 20.0%
!!! TAATACTTTAATTTAGTCGA+TGG + chr2_1:11596332-11596351 Msa0194990:intron 20.0%
!! TAATTGTACACTTCATTATA+TGG + chr2_1:11596375-11596394 Msa0194990:intron 20.0%
!! CATTTGAATAAAATTAGTGT+TGG - chr2_1:11596788-11596807 None:intergenic 20.0%
!!! AATCATTCTAAAAGCATTTA+TGG - chr2_1:11597096-11597115 None:intergenic 20.0%
!!! ATGCTTTTAGAATGATTTTA+TGG + chr2_1:11597099-11597118 Msa0194990:intron 20.0%
!! CATTTCATACTACTTAATTT+GGG - chr2_1:11598160-11598179 None:intergenic 20.0%
!! ACATTTCATACTACTTAATT+TGG - chr2_1:11598161-11598180 None:intergenic 20.0%
!! AAGATTTTGAATGAGATAGT+TGG - chr2_1:11593900-11593919 None:intergenic 25.0%
! AACTATCTCATTCAAAATCT+TGG + chr2_1:11593899-11593918 Msa0194990:CDS 25.0%
! CATGTGATTTGAATAATGAA+AGG - chr2_1:11593997-11594016 None:intergenic 25.0%
! CTTTCATTATTCAAATCACA+TGG + chr2_1:11593995-11594014 Msa0194990:CDS 25.0%
!! GATCTAAAGAGAGAATTTTT+GGG - chr2_1:11594060-11594079 None:intergenic 25.0%
!! AAGCTTTTATAAAAGATAGC+AGG - chr2_1:11594169-11594188 None:intergenic 25.0%
!! TGCTATCTTTTATAAAAGCT+TGG + chr2_1:11594168-11594187 Msa0194990:CDS 25.0%
!!! TCCTTATTTTGTTTCGAAAT+TGG + chr2_1:11594350-11594369 Msa0194990:CDS 25.0%
! ACCAATTTCGAAACAAAATA+AGG - chr2_1:11594354-11594373 None:intergenic 25.0%
!!! ACAATGAAAACAGTTGTTTT+GGG - chr2_1:11594448-11594467 None:intergenic 25.0%
!! AACAATGAAAACAGTTGTTT+TGG - chr2_1:11594449-11594468 None:intergenic 25.0%
!! ATAAAAAAATCCTTTGGGAA+AGG + chr2_1:11594488-11594507 Msa0194990:CDS 25.0%
! AGATTGATGTGTATAAGAAA+TGG + chr2_1:11594512-11594531 Msa0194990:CDS 25.0%
! GATTGATGTGTATAAGAAAT+GGG + chr2_1:11594513-11594532 Msa0194990:CDS 25.0%
! ATTGATGTGTATAAGAAATG+GGG + chr2_1:11594514-11594533 Msa0194990:CDS 25.0%
!!! GAAATTTTTTGTTGATCACA+TGG + chr2_1:11594621-11594640 Msa0194990:CDS 25.0%
! TTGAAATTTCTTGAGTCTAA+AGG + chr2_1:11594727-11594746 Msa0194990:CDS 25.0%
! TTTGATTAAGGATGCTAAAT+TGG + chr2_1:11594750-11594769 Msa0194990:CDS 25.0%
! AAAACAAACACTCAGAAATT+TGG - chr2_1:11594786-11594805 None:intergenic 25.0%
! AGAAAAAAGATGTTTCCAAT+AGG + chr2_1:11594866-11594885 Msa0194990:CDS 25.0%
!!! ATCTTTTTTCAACATCCTAT+TGG - chr2_1:11594884-11594903 None:intergenic 25.0%
! AATCAATGAAGGAATCTTAT+AGG - chr2_1:11595129-11595148 None:intergenic 25.0%
!! AAGATTCCTTCATTGATTAA+AGG + chr2_1:11595131-11595150 Msa0194990:intron 25.0%
!! AGATTCCTTCATTGATTAAA+GGG + chr2_1:11595132-11595151 Msa0194990:intron 25.0%
! AATATGGGTGAAAAATTCTA+AGG + chr2_1:11595348-11595367 Msa0194990:intron 25.0%
!!! TGAAAAATTCTAAGGTCTTT+TGG + chr2_1:11595356-11595375 Msa0194990:intron 25.0%
!!! GAGTTATTTATTTTGGTATG+CGG + chr2_1:11595420-11595439 Msa0194990:intron 25.0%
! GGTGATATCTCTATAAAATA+AGG + chr2_1:11595441-11595460 Msa0194990:intron 25.0%
!! GTATAATACAATTTTGCTTG+TGG + chr2_1:11595535-11595554 Msa0194990:intron 25.0%
! ATATGTCTTAGAGTTGAATA+AGG + chr2_1:11595746-11595765 Msa0194990:intron 25.0%
! TATGTCTTAGAGTTGAATAA+GGG + chr2_1:11595747-11595766 Msa0194990:intron 25.0%
!!! CCATTAATGTTTTGAATTTC+AGG - chr2_1:11596062-11596081 None:intergenic 25.0%
! CCTGAAATTCAAAACATTAA+TGG + chr2_1:11596059-11596078 Msa0194990:intron 25.0%
! AAATTCAAAACATTAATGGG+TGG + chr2_1:11596063-11596082 Msa0194990:intron 25.0%
!! TATTTTTCCTTATTAGTCGA+TGG + chr2_1:11596276-11596295 Msa0194990:intron 25.0%
! TACCATAGAAAATAGGAATT+AGG + chr2_1:11596834-11596853 Msa0194990:intron 25.0%
!! AACCTAATTCCTATTTTCTA+TGG - chr2_1:11596839-11596858 None:intergenic 25.0%
! TTGTTGAGGTTAAACATATA+TGG + chr2_1:11596976-11596995 Msa0194990:intron 25.0%
!! AACATATATGGAGTTTGTTT+AGG + chr2_1:11596988-11597007 Msa0194990:intron 25.0%
! AGCAAATATGTATTACTTAC+AGG + chr2_1:11597354-11597373 Msa0194990:intron 25.0%
! ATATAAACTCAATCTAACTG+TGG + chr2_1:11597483-11597502 Msa0194990:intron 25.0%
! TAGAAGAACACAAGAAAAAA+GGG - chr2_1:11597938-11597957 None:intergenic 25.0%
!! CCATTAAAAACACTTGATTT+TGG - chr2_1:11598022-11598041 None:intergenic 25.0%
!!! CCAAAATCAAGTGTTTTTAA+TGG + chr2_1:11598019-11598038 Msa0194990:intron 25.0%
! TATTCAACTAAAATACTCCA+CGG - chr2_1:11598185-11598204 None:intergenic 25.0%
! AAAATTATACTGTACCACAT+TGG - chr2_1:11598230-11598249 None:intergenic 25.0%
AAACTGAATGTGAGGTTATT+GGG - chr2_1:11593788-11593807 None:intergenic 30.0%
! TGAAGATTGTGTTACTGTTA+GGG - chr2_1:11593816-11593835 None:intergenic 30.0%
! ATGAAGATTGTGTTACTGTT+AGG - chr2_1:11593817-11593836 None:intergenic 30.0%
! TTGAATTTTGTTGGAGAGTT+TGG - chr2_1:11593945-11593964 None:intergenic 30.0%
! GGATCTAAAGAGAGAATTTT+TGG - chr2_1:11594061-11594080 None:intergenic 30.0%
!!! TTGGGAAGAATGGTTTTATT+GGG - chr2_1:11594082-11594101 None:intergenic 30.0%
!!! TTTGGGAAGAATGGTTTTAT+TGG - chr2_1:11594083-11594102 None:intergenic 30.0%
AAAATTGAGTTTGGGAAGAA+TGG - chr2_1:11594092-11594111 None:intergenic 30.0%
GAGAGAAGAAAATTGAGTTT+GGG - chr2_1:11594100-11594119 None:intergenic 30.0%
TGAGAGAAGAAAATTGAGTT+TGG - chr2_1:11594101-11594120 None:intergenic 30.0%
! ACTCAATTTTCTTCTCTCAA+AGG + chr2_1:11594102-11594121 Msa0194990:CDS 30.0%
! CTCAATTTTCTTCTCTCAAA+GGG + chr2_1:11594103-11594122 Msa0194990:CDS 30.0%
ATAAAAGATAGCAGGATTTC+TGG - chr2_1:11594161-11594180 None:intergenic 30.0%
ATTCAAATCCTGCTTCAAAA+TGG + chr2_1:11594310-11594329 Msa0194990:CDS 30.0%
TTCAAATCCTGCTTCAAAAT+GGG + chr2_1:11594311-11594330 Msa0194990:CDS 30.0%
AAAATAAGGACTTTAGACTC+AGG - chr2_1:11594340-11594359 None:intergenic 30.0%
TTGGTGGAAGTAAATGAATT+AGG + chr2_1:11594415-11594434 Msa0194990:CDS 30.0%
!! CAATGAAAACAGTTGTTTTG+GGG - chr2_1:11594447-11594466 None:intergenic 30.0%
! TTTTTGTTGATCACATGGAT+TGG + chr2_1:11594626-11594645 Msa0194990:CDS 30.0%
AATTTCAAGACAAAAGCTCT+AGG - chr2_1:11594715-11594734 None:intergenic 30.0%
TGAGTCTAAAGGTTTGATTA+AGG + chr2_1:11594738-11594757 Msa0194990:CDS 30.0%
AAACACTCAGAAATTTGGAA+AGG - chr2_1:11594781-11594800 None:intergenic 30.0%
AATCTGAGAAGTTACATCAA+GGG + chr2_1:11594929-11594948 Msa0194990:intron 30.0%
!!! TAGAAGCTTGTTTTGAAGAT+AGG + chr2_1:11595003-11595022 Msa0194990:intron 30.0%
!!! TCTCACATCTGTGATTTTTT+GGG + chr2_1:11595044-11595063 Msa0194990:intron 30.0%
! GTTTTCCCTTTAATCAATGA+AGG - chr2_1:11595140-11595159 None:intergenic 30.0%
ACAAGTAATCCTAGTCTAAA+TGG - chr2_1:11595168-11595187 None:intergenic 30.0%
TCTTGACAAAATGATACACA+TGG - chr2_1:11595281-11595300 None:intergenic 30.0%
! CACCAGAGCATTTAAAATAT+GGG + chr2_1:11595333-11595352 Msa0194990:intron 30.0%
!!! AAATTCTAAGGTCTTTTGGA+TGG + chr2_1:11595360-11595379 Msa0194990:intron 30.0%
TCTCTATAAAATAAGGTCGT+TGG + chr2_1:11595448-11595467 Msa0194990:intron 30.0%
AATTTCTGTCAAACCGAAAA+GGG - chr2_1:11595682-11595701 None:intergenic 30.0%
AAATTTCTGTCAAACCGAAA+AGG - chr2_1:11595683-11595702 None:intergenic 30.0%
!! TTTTCGGTTTGACAGAAATT+TGG + chr2_1:11595682-11595701 Msa0194990:intron 30.0%
ATGTCTTAGAGTTGAATAAG+GGG + chr2_1:11595748-11595767 Msa0194990:intron 30.0%
ATTGTTATGTGTTCCTTACA+TGG + chr2_1:11595916-11595935 Msa0194990:CDS 30.0%
TTGTTATGTGTTCCTTACAT+GGG + chr2_1:11595917-11595936 Msa0194990:CDS 30.0%
ACTCAACTTGATATTTGAGT+AGG - chr2_1:11596001-11596020 None:intergenic 30.0%
!! ACTCAAATATCAAGTTGAGT+TGG + chr2_1:11596001-11596020 Msa0194990:intron 30.0%
! GTTGTTTACAATTCTAGAGA+TGG + chr2_1:11596023-11596042 Msa0194990:intron 30.0%
AATGTGATATCAAACTTTCC+TGG - chr2_1:11596106-11596125 None:intergenic 30.0%
GTTTATAAAGAACTCACTAC+TGG + chr2_1:11596187-11596206 Msa0194990:intron 30.0%
TAAAGTAACCAGCAAACATA+AGG - chr2_1:11596251-11596270 None:intergenic 30.0%
! ACATATTCCATCGACTAATA+AGG - chr2_1:11596286-11596305 None:intergenic 30.0%
ACACTTCATTATATGGTTAG+CGG + chr2_1:11596382-11596401 Msa0194990:intron 30.0%
GAATCACAATTCTTTGCATT+TGG - chr2_1:11596570-11596589 None:intergenic 30.0%
!! TATCGCTGTTTTCTATACTT+AGG + chr2_1:11596689-11596708 Msa0194990:intron 30.0%
CTCATAAAGGGTTCAAAATT+TGG - chr2_1:11596746-11596765 None:intergenic 30.0%
! CAAATTTTGAACCCTTTATG+AGG + chr2_1:11596744-11596763 Msa0194990:intron 30.0%
AATCATATGCTGATAGAATG+AGG - chr2_1:11597159-11597178 None:intergenic 30.0%
ATATGCATGAGGAATTAACA+TGG - chr2_1:11597258-11597277 None:intergenic 30.0%
GTTTCTCAGAAAAGATGTAT+CGG + chr2_1:11597513-11597532 Msa0194990:intron 30.0%
AGCCATTTACTGATCAAATA+AGG + chr2_1:11597623-11597642 Msa0194990:intron 30.0%
! CACCTTATTTGATCAGTAAA+TGG - chr2_1:11597628-11597647 None:intergenic 30.0%
!!! TTGTTTTTGCAGTTCTGTTT+TGG + chr2_1:11597884-11597903 Msa0194990:intron 30.0%
GTAGAAGAACACAAGAAAAA+AGG - chr2_1:11597939-11597958 None:intergenic 30.0%
! TACTACTTAATTTGGGACTT+AGG - chr2_1:11598153-11598172 None:intergenic 30.0%
AACTGAATGTGAGGTTATTG+GGG - chr2_1:11593787-11593806 None:intergenic 35.0%
GAAACTGAATGTGAGGTTAT+TGG - chr2_1:11593789-11593808 None:intergenic 35.0%
!! GTTGTGAAAGTGTGATTTTG+GGG - chr2_1:11593878-11593897 None:intergenic 35.0%
!! GGTTGTGAAAGTGTGATTTT+GGG - chr2_1:11593879-11593898 None:intergenic 35.0%
!! TGGTTGTGAAAGTGTGATTT+TGG - chr2_1:11593880-11593899 None:intergenic 35.0%
!!! GTCGTTGAGTTGAATTTTGT+TGG - chr2_1:11593954-11593973 None:intergenic 35.0%
AATAATGAAAGGACTGAGTC+TGG - chr2_1:11593986-11594005 None:intergenic 35.0%
!! TTTGATGAGAGTTGATAGCT+GGG - chr2_1:11594032-11594051 None:intergenic 35.0%
!!! TTTTGATGAGAGTTGATAGC+TGG - chr2_1:11594033-11594052 None:intergenic 35.0%
! TTCTGGTGATGATTTGAACA+AGG - chr2_1:11594144-11594163 None:intergenic 35.0%
!! GATTTGAATATTCTGAGACG+TGG - chr2_1:11594299-11594318 None:intergenic 35.0%
TCAAATCCTGCTTCAAAATG+GGG + chr2_1:11594312-11594331 Msa0194990:CDS 35.0%
AATGCCTTCTCAAATCTTGA+AGG - chr2_1:11594397-11594416 None:intergenic 35.0%
! TTCAAGATTTGAGAAGGCAT+TGG + chr2_1:11594396-11594415 Msa0194990:CDS 35.0%
ATGTGTATAAGAAATGGGGT+TGG + chr2_1:11594518-11594537 Msa0194990:CDS 35.0%
!!! CAGCATTTTTGAAGTATCCA+TGG + chr2_1:11594560-11594579 Msa0194990:CDS 35.0%
!! GACTCAGCAAAAGAAGTATT+GGG - chr2_1:11594675-11594694 None:intergenic 35.0%
! AGACTCAGCAAAAGAAGTAT+TGG - chr2_1:11594676-11594695 None:intergenic 35.0%
! TTTTGCTGAGTCTTGAGAAA+AGG + chr2_1:11594683-11594702 Msa0194990:CDS 35.0%
TTTGCTGAGTCTTGAGAAAA+GGG + chr2_1:11594684-11594703 Msa0194990:CDS 35.0%
ATTAAGGATGCTAAATTGGC+TGG + chr2_1:11594754-11594773 Msa0194990:CDS 35.0%
! AAGATTTTAAGCCGTGAGAT+TGG + chr2_1:11594899-11594918 Msa0194990:intron 35.0%
CAATCTGAGAAGTTACATCA+AGG + chr2_1:11594928-11594947 Msa0194990:intron 35.0%
!!! GTCTCACATCTGTGATTTTT+TGG + chr2_1:11595043-11595062 Msa0194990:intron 35.0%
!!! CTCACATCTGTGATTTTTTG+GGG + chr2_1:11595045-11595064 Msa0194990:intron 35.0%
!!! TCACATCTGTGATTTTTTGG+GGG + chr2_1:11595046-11595065 Msa0194990:intron 35.0%
AAACCACAACCATTTAGACT+AGG + chr2_1:11595156-11595175 Msa0194990:intron 35.0%
AATCCTAGTCTAAATGGTTG+TGG - chr2_1:11595162-11595181 None:intergenic 35.0%
AATAGGCAAAAGATGGAAGA+CGG - chr2_1:11595248-11595267 None:intergenic 35.0%
TGCAACAAATAGGCAAAAGA+TGG - chr2_1:11595255-11595274 None:intergenic 35.0%
CACATGGATATGCAACAAAT+AGG - chr2_1:11595265-11595284 None:intergenic 35.0%
! GGATTTATTGCTCCATGTTT+TGG - chr2_1:11595314-11595333 None:intergenic 35.0%
!! CCATATTTTAAATGCTCTGG+TGG - chr2_1:11595335-11595354 None:intergenic 35.0%
! CCACCAGAGCATTTAAAATA+TGG + chr2_1:11595332-11595351 Msa0194990:intron 35.0%
!! CACCCATATTTTAAATGCTC+TGG - chr2_1:11595338-11595357 None:intergenic 35.0%
!! ATCTTGATTTGGAGTGTTGA+GGG + chr2_1:11595808-11595827 Msa0194990:intron 35.0%
GTGATACTTCTTCAGATGTT+TGG + chr2_1:11595855-11595874 Msa0194990:intron 35.0%
! TTCAGATGTTTGGCTTATGA+AGG + chr2_1:11595865-11595884 Msa0194990:CDS 35.0%
! GTTTGGCTTATGAAGGAATA+TGG + chr2_1:11595872-11595891 Msa0194990:CDS 35.0%
TTGATATTTGAGTAGGCACT+TGG - chr2_1:11595994-11596013 None:intergenic 35.0%
! TCAAAACATTAATGGGTGGA+TGG + chr2_1:11596067-11596086 Msa0194990:intron 35.0%
TTATAAACCTCATGCACAAG+TGG - chr2_1:11596175-11596194 None:intergenic 35.0%
TAACATACAAGTTGCAGCTA+GGG - chr2_1:11596224-11596243 None:intergenic 35.0%
TTAACATACAAGTTGCAGCT+AGG - chr2_1:11596225-11596244 None:intergenic 35.0%
!!! GTCGATGGATAGTTTTTTGT+TGG + chr2_1:11596347-11596366 Msa0194990:intron 35.0%
TCATTATATGGTTAGCGGTT+TGG + chr2_1:11596387-11596406 Msa0194990:intron 35.0%
!! GAATTAGGTTTTATGCCCTT+TGG + chr2_1:11596409-11596428 Msa0194990:intron 35.0%
CTCGTGATACCATAGAAAAT+AGG + chr2_1:11596827-11596846 Msa0194990:intron 35.0%
! TATATGGAGTTTGTTTAGGC+TGG + chr2_1:11596992-11597011 Msa0194990:intron 35.0%
!! TAAAAGCATTTATGGAGACC+AGG - chr2_1:11597088-11597107 None:intergenic 35.0%
GTGTTTGAGAAATATGCATG+AGG - chr2_1:11597269-11597288 None:intergenic 35.0%
AGTGTAAGAGTTCTACGTAT+TGG - chr2_1:11597425-11597444 None:intergenic 35.0%
! GGGTTTTTACATAAGGATCA+TGG - chr2_1:11597587-11597606 None:intergenic 35.0%
!! CAGGGGCTTCTTTAAAATTT+CGG + chr2_1:11597850-11597869 Msa0194990:intron 35.0%
AAGTAGTATGAAATGTTCCG+TGG + chr2_1:11598165-11598184 Msa0194990:intron 35.0%
ATGGATTTAGCATCCAAATG+AGG + chr2_1:11598348-11598367 Msa0194990:intron 35.0%
TGGATTTAGCATCCAAATGA+GGG + chr2_1:11598349-11598368 Msa0194990:intron 35.0%
TGCTTCATCTTCAATTCGAA+GGG + chr2_1:11598433-11598452 Msa0194990:CDS 35.0%
CACAAATACTCTTCTATCTG+CGG - chr2_1:11598540-11598559 None:intergenic 35.0%
!! AGATAGAAGAGTATTTGTGC+CGG + chr2_1:11598541-11598560 Msa0194990:CDS 35.0%
!!! GGGTTTTGAAACTGAATGTG+AGG - chr2_1:11593796-11593815 None:intergenic 40.0%
GAGATGAAGAAGAAAAGGGT+TGG - chr2_1:11593856-11593875 None:intergenic 40.0%
TGGGGAGATGAAGAAGAAAA+GGG - chr2_1:11593860-11593879 None:intergenic 40.0%
TTGGGGAGATGAAGAAGAAA+AGG - chr2_1:11593861-11593880 None:intergenic 40.0%
GAAGCCTTCAAGATTTGAGA+AGG + chr2_1:11594390-11594409 Msa0194990:CDS 40.0%
!! AAGATTTGAGAAGGCATTGG+TGG + chr2_1:11594399-11594418 Msa0194990:CDS 40.0%
CATCAATCTTCCTTTCCCAA+AGG - chr2_1:11594501-11594520 None:intergenic 40.0%
! GAAGTATCCATGGTGTATGT+TGG + chr2_1:11594570-11594589 Msa0194990:CDS 40.0%
GGCATCTGTTCGTAAAATTG+AGG + chr2_1:11594591-11594610 Msa0194990:CDS 40.0%
GAAGTTTGTGTATTGCTTCG+AGG + chr2_1:11594810-11594829 Msa0194990:CDS 40.0%
TCAAATCCAGTAGATGACCA+TGG - chr2_1:11594969-11594988 None:intergenic 40.0%
TGGTCATCTACTGGATTTGA+TGG + chr2_1:11594969-11594988 Msa0194990:intron 40.0%
ATAGGCAAAAGATGGAAGAC+GGG - chr2_1:11595247-11595266 None:intergenic 40.0%
GAGTCTTGCTTACCAAAACA+TGG + chr2_1:11595299-11595318 Msa0194990:intron 40.0%
!! CATTGTTTCTAACTCCCAGT+TGG + chr2_1:11595577-11595596 Msa0194990:intron 40.0%
TATATGAAGTCACACACCAC+CGG - chr2_1:11595622-11595641 None:intergenic 40.0%
! AGTTTGTGTACTGCCCTTTT+CGG + chr2_1:11595666-11595685 Msa0194990:intron 40.0%
!! CATCTTGATTTGGAGTGTTG+AGG + chr2_1:11595807-11595826 Msa0194990:intron 40.0%
TTCCTTACATGGGAGATGTT+GGG + chr2_1:11595927-11595946 Msa0194990:CDS 40.0%
TGGGTCGTATCTTTATACCA+AGG + chr2_1:11595946-11595965 Msa0194990:CDS 40.0%
! CTCAGTAAGATAAAGTGCCT+TGG - chr2_1:11595966-11595985 None:intergenic 40.0%
! CAAGGCACTTTATCTTACTG+AGG + chr2_1:11595964-11595983 Msa0194990:CDS 40.0%
AACTTTCCTGGTAGACTTCA+GGG - chr2_1:11596094-11596113 None:intergenic 40.0%
AAACTTTCCTGGTAGACTTC+AGG - chr2_1:11596095-11596114 None:intergenic 40.0%
GTTAAGTGCCTTATGTTTGC+TGG + chr2_1:11596240-11596259 Msa0194990:intron 40.0%
! ATGGTTAGCGGTTTGGAATT+AGG + chr2_1:11596394-11596413 Msa0194990:intron 40.0%
ACACAAAAGTGACAGCCAAA+GGG - chr2_1:11596427-11596446 None:intergenic 40.0%
TACACAAAAGTGACAGCCAA+AGG - chr2_1:11596428-11596447 None:intergenic 40.0%
ACATATAACCGTTGCGATGA+CGG - chr2_1:11596622-11596641 None:intergenic 40.0%
ATTGTGTGACAGAGAAAGTG+TGG - chr2_1:11596647-11596666 None:intergenic 40.0%
!! GCTGTTTTCTATACTTAGGC+TGG + chr2_1:11596693-11596712 Msa0194990:intron 40.0%
GGCTGGATCTCATTGTTTAA+TGG + chr2_1:11596710-11596729 Msa0194990:intron 40.0%
ACCTAGCACTTCCTCATAAA+GGG - chr2_1:11596758-11596777 None:intergenic 40.0%
AACCTAGCACTTCCTCATAA+AGG - chr2_1:11596759-11596778 None:intergenic 40.0%
TCCAGTTGCACAGAGATTTA+GGG - chr2_1:11596954-11596973 None:intergenic 40.0%
CTTGAATGCTGTCTCTTGAT+TGG + chr2_1:11597054-11597073 Msa0194990:intron 40.0%
CAGAGACAAGCATGTTTCTT+TGG + chr2_1:11597182-11597201 Msa0194990:intron 40.0%
! GTTGTATTTTCAGCTCTCCT+TGG + chr2_1:11597225-11597244 Msa0194990:intron 40.0%
ATTAACATGGAGATCGACCA+AGG - chr2_1:11597245-11597264 None:intergenic 40.0%
TCACATACGTTCCAACTTGA+GGG - chr2_1:11597449-11597468 None:intergenic 40.0%
!! ATAAGGTGTCGAAGACTTGT+TGG + chr2_1:11597640-11597659 Msa0194990:intron 40.0%
TGAAACTCCACAATGAATCC+AGG - chr2_1:11597731-11597750 None:intergenic 40.0%
GGATTCATTGTGGAGTTTCA+CGG + chr2_1:11597731-11597750 Msa0194990:CDS 40.0%
!! TAAACAGAAGTGCTACAGCA+GGG - chr2_1:11597827-11597846 None:intergenic 40.0%
!! CGAAATTTTAAAGAAGCCCC+TGG - chr2_1:11597852-11597871 None:intergenic 40.0%
!! GGGCTTCTTTAAAATTTCGG+AGG + chr2_1:11597853-11597872 Msa0194990:intron 40.0%
!!! ACACTTGATTTTGGAGCACA+AGG - chr2_1:11598013-11598032 None:intergenic 40.0%
GACAATCACAAGGAGAATGA+AGG - chr2_1:11598103-11598122 None:intergenic 40.0%
TCATTCTCCTTGTGATTGTC+TGG + chr2_1:11598103-11598122 Msa0194990:intron 40.0%
TTTGTCCAGTTTCACCAATG+TGG + chr2_1:11598213-11598232 Msa0194990:intron 40.0%
TTCTAGTGGCTTCAGAAATG+TGG - chr2_1:11598293-11598312 None:intergenic 40.0%
ACCATCAGCATGAATTCTAG+TGG - chr2_1:11598307-11598326 None:intergenic 40.0%
GATAGAACCTTAGAGTGTAC+AGG - chr2_1:11598401-11598420 None:intergenic 40.0%
TCGAATTGAAGATGAAGCAG+CGG - chr2_1:11598432-11598451 None:intergenic 40.0%
CTGCTTCATCTTCAATTCGA+AGG + chr2_1:11598432-11598451 Msa0194990:CDS 40.0%
GCTTCATCTTCAATTCGAAG+GGG + chr2_1:11598434-11598453 Msa0194990:CDS 40.0%
! TACTTTCTAGGAAGAGTAGC+AGG - chr2_1:11598485-11598504 None:intergenic 40.0%
CCTCTACGTGTATACTTTCT+AGG - chr2_1:11598497-11598516 None:intergenic 40.0%
! CCTAGAAAGTATACACGTAG+AGG + chr2_1:11598494-11598513 Msa0194990:CDS 40.0%
AAAGTATACACGTAGAGGCT+TGG + chr2_1:11598499-11598518 Msa0194990:CDS 40.0%
!! GATAGAAGAGTATTTGTGCC+GGG + chr2_1:11598542-11598561 Msa0194990:CDS 40.0%
GAAGAAAAGGAGGAAAGGTA+AGG + chr2_1:11598564-11598583 Msa0194990:CDS 40.0%
AAAAGGAGGAAAGGTAAGGA+AGG + chr2_1:11598568-11598587 Msa0194990:CDS 40.0%
AAAGGAGGAAAGGTAAGGAA+GGG + chr2_1:11598569-11598588 Msa0194990:CDS 40.0%
GAGAGTTTGGAAGCAGTTTC+TGG - chr2_1:11593932-11593951 None:intergenic 45.0%
!! GCAGTTTTTGAGAGATGCGA+TGG - chr2_1:11594254-11594273 None:intergenic 45.0%
ACAGATGCCAACATACACCA+TGG - chr2_1:11594580-11594599 None:intergenic 45.0%
! GGGTGTTTTGCAAGCACAAT+AGG - chr2_1:11594655-11594674 None:intergenic 45.0%
GATTGTGATCGCCAATCTCA+CGG - chr2_1:11594913-11594932 None:intergenic 45.0%
AGATAGGACTCGTATGCAAG+TGG + chr2_1:11595019-11595038 Msa0194990:intron 45.0%
! TGTTTCTAACTCCCAGTTGG+CGG + chr2_1:11595580-11595599 Msa0194990:intron 45.0%
AAACCTATAAGCAGCCAGTG+AGG - chr2_1:11595718-11595737 None:intergenic 45.0%
! TCACTGGCTGCTTATAGGTT+TGG + chr2_1:11595717-11595736 Msa0194990:intron 45.0%
AGTTGAATAAGGGGCAGAAG+AGG + chr2_1:11595757-11595776 Msa0194990:intron 45.0%
GTTCCTTACATGGGAGATGT+TGG + chr2_1:11595926-11595945 Msa0194990:CDS 45.0%
! TGTTATGCCACTTGTGCATG+AGG + chr2_1:11596165-11596184 Msa0194990:intron 45.0%
TGAAGCAACATGAAGCTTCG+TGG + chr2_1:11596518-11596537 Msa0194990:intron 45.0%
!! ACCCTTTATGAGGAAGTGCT+AGG + chr2_1:11596754-11596773 Msa0194990:intron 45.0%
!! GTGTTGACTGCTTGAATGAG+TGG + chr2_1:11596876-11596895 Msa0194990:intron 45.0%
TCCCTAAATCTCTGTGCAAC+TGG + chr2_1:11596950-11596969 Msa0194990:intron 45.0%
CTCCAGTTGCACAGAGATTT+AGG - chr2_1:11596955-11596974 None:intergenic 45.0%
!! TGTGCAACTGGAGTTTGTTG+AGG + chr2_1:11596962-11596981 Msa0194990:intron 45.0%
!! TCTTGATTGGAAAGTGCTCC+TGG + chr2_1:11597067-11597086 Msa0194990:intron 45.0%
CTCTTACACTACCCTCAAGT+TGG + chr2_1:11597435-11597454 Msa0194990:intron 45.0%
CTCACATACGTTCCAACTTG+AGG - chr2_1:11597450-11597469 None:intergenic 45.0%
AGATGTATCGGACATTCTCG+AGG + chr2_1:11597525-11597544 Msa0194990:intron 45.0%
GATGTATCGGACATTCTCGA+GGG + chr2_1:11597526-11597545 Msa0194990:intron 45.0%
! CAGGGAGGGGTTTTTACATA+AGG - chr2_1:11597594-11597613 None:intergenic 45.0%
TAAATGGCTCCTCCTGTACA+GGG - chr2_1:11597612-11597631 None:intergenic 45.0%
GCAAAGAAGCAGGAGGAAAA+AGG - chr2_1:11597761-11597780 None:intergenic 45.0%
!! AAACAGAAGTGCTACAGCAG+GGG - chr2_1:11597826-11597845 None:intergenic 45.0%
!! CTAAACAGAAGTGCTACAGC+AGG - chr2_1:11597828-11597847 None:intergenic 45.0%
CTGCTGTAGCACTTCTGTTT+AGG + chr2_1:11597826-11597845 Msa0194990:intron 45.0%
TAGCACTTCTGTTTAGGCCA+GGG + chr2_1:11597832-11597851 Msa0194990:intron 45.0%
TCTCCTTGTGATTGTCTGGT+AGG + chr2_1:11598107-11598126 Msa0194990:intron 45.0%
CTCCTTGTGATTGTCTGGTA+GGG + chr2_1:11598108-11598127 Msa0194990:intron 45.0%
TGATTGTCTGGTAGGGACTA+GGG + chr2_1:11598115-11598134 Msa0194990:intron 45.0%
! TGGTAGGGACTAGGGTATTA+TGG + chr2_1:11598123-11598142 Msa0194990:intron 45.0%
! GGTAGGGACTAGGGTATTAT+GGG + chr2_1:11598124-11598143 Msa0194990:intron 45.0%
CTGTACCACATTGGTGAAAC+TGG - chr2_1:11598221-11598240 None:intergenic 45.0%
GCCACTAGAATTCATGCTGA+TGG + chr2_1:11598303-11598322 Msa0194990:intron 45.0%
AACCTTAGAGTGTACAGGTG+TGG - chr2_1:11598396-11598415 None:intergenic 45.0%
! TTTCTAGGAAGAGTAGCAGG+TGG - chr2_1:11598482-11598501 None:intergenic 45.0%
GTATTTGTGCCGGGAAGAAA+AGG + chr2_1:11598551-11598570 Msa0194990:CDS 45.0%
! ACCTTTCCTCCTTTTCTTCC+CGG - chr2_1:11598563-11598582 None:intergenic 45.0%
!!! ATTTTTTATTTTTTTGATAT+TGG - chr2_1:11598052-11598071 None:intergenic 5.0%
!! CAAAAAAATAAAAAATAAAT+TGG + chr2_1:11598056-11598075 Msa0194990:intron 5.0%
!!! CAGGAACCCCATTTTGAAGC+AGG - chr2_1:11594321-11594340 None:intergenic 50.0%
ACACGACCATGGTCATCTAC+TGG + chr2_1:11594960-11594979 Msa0194990:intron 50.0%
CAGAAGGATTACCGCCAACT+GGG - chr2_1:11595594-11595613 None:intergenic 50.0%
TCAGAAGGATTACCGCCAAC+TGG - chr2_1:11595595-11595614 None:intergenic 50.0%
AGTTGGCGGTAATCCTTCTG+AGG + chr2_1:11595594-11595613 Msa0194990:intron 50.0%
! CGGTAATCCTTCTGAGGATC+CGG + chr2_1:11595600-11595619 Msa0194990:intron 50.0%
! TAATCCTTCTGAGGATCCGG+TGG + chr2_1:11595603-11595622 Msa0194990:intron 50.0%
TTGGTTAACACCAGCCTCAC+TGG + chr2_1:11595701-11595720 Msa0194990:intron 50.0%
GACCCAACATCTCCCATGTA+AGG - chr2_1:11595932-11595951 None:intergenic 50.0%
!! ATAACCGTTGCGATGACGGA+TGG - chr2_1:11596618-11596637 None:intergenic 50.0%
GTAAAAACCCCTCCCTGTAC+AGG + chr2_1:11597597-11597616 Msa0194990:intron 50.0%
GTAAATGGCTCCTCCTGTAC+AGG - chr2_1:11597613-11597632 None:intergenic 50.0%
AAGAGCAGCAAAGAAGCAGG+AGG - chr2_1:11597768-11597787 None:intergenic 50.0%
ACGAAGAGCAGCAAAGAAGC+AGG - chr2_1:11597771-11597790 None:intergenic 50.0%
GGGAAAATACCAGCAGAGAG+CGG - chr2_1:11597806-11597825 None:intergenic 50.0%
GTAGCACTTCTGTTTAGGCC+AGG + chr2_1:11597831-11597850 Msa0194990:intron 50.0%
AGCACTTCTGTTTAGGCCAG+GGG + chr2_1:11597833-11597852 Msa0194990:intron 50.0%
!! TTTGGAGCACAAGGAGTACC+CGG - chr2_1:11598004-11598023 None:intergenic 50.0%
GTCCCTACCAGACAATCACA+AGG - chr2_1:11598113-11598132 None:intergenic 50.0%
GTGATTGTCTGGTAGGGACT+AGG + chr2_1:11598114-11598133 Msa0194990:intron 50.0%
!! GCTTCTCTGAGACCCTCATT+TGG - chr2_1:11598364-11598383 None:intergenic 50.0%
AATGAGGGTCTCAGAGAAGC+TGG + chr2_1:11598364-11598383 Msa0194990:intron 50.0%
GTCCACACCTGTACACTCTA+AGG + chr2_1:11598391-11598410 Msa0194990:CDS 50.0%
TTTGTGCCGGGAAGAAAAGG+AGG + chr2_1:11598554-11598573 Msa0194990:CDS 50.0%
CTATAAGCAGCCAGTGAGGC+TGG - chr2_1:11595714-11595733 None:intergenic 55.0%
! CAGCCTCACTGGCTGCTTAT+AGG + chr2_1:11595712-11595731 Msa0194990:intron 55.0%
GATGGTCCCTGAAGTCTACC+AGG + chr2_1:11596085-11596104 Msa0194990:intron 55.0%
TGCTCAAAACCGCGTGTTGC+TGG + chr2_1:11596489-11596508 Msa0194990:intron 55.0%
! GCTCAAAACCGCGTGTTGCT+GGG + chr2_1:11596490-11596509 Msa0194990:intron 55.0%
TCAGACATCCCAGCAACACG+CGG - chr2_1:11596501-11596520 None:intergenic 55.0%
TCCACCATCCGTCATCGCAA+CGG + chr2_1:11596611-11596630 Msa0194990:intron 55.0%
AAAACCCCTCCCTGTACAGG+AGG + chr2_1:11597600-11597619 Msa0194990:intron 55.0%
TTGCTGCGACTCTTTCCGAG+CGG + chr2_1:11597704-11597723 Msa0194990:CDS 55.0%
ACAATGAATCCAGGCCCGCT+CGG - chr2_1:11597722-11597741 None:intergenic 55.0%
TGCAGCCTTTGTGTCGTCCT+CGG + chr2_1:11597971-11597990 Msa0194990:intron 55.0%
ACAAGCCGAGGACGACACAA+AGG - chr2_1:11597979-11597998 None:intergenic 55.0%
! TGTCGTCCTCGGCTTGTTTC+CGG + chr2_1:11597982-11598001 Msa0194990:intron 55.0%
AGAGGCTTGGCGTCAATGAG+AGG + chr2_1:11598512-11598531 Msa0194990:CDS 55.0%
GCCGGGAAGAAAAGGAGGAA+AGG + chr2_1:11598559-11598578 Msa0194990:CDS 55.0%
CACACCACCGGATCCTCAGA+AGG - chr2_1:11595610-11595629 None:intergenic 60.0%
!! GTTGCGATGACGGATGGTGG+AGG - chr2_1:11596612-11596631 None:intergenic 60.0%
!! ACCGTTGCGATGACGGATGG+TGG - chr2_1:11596615-11596634 None:intergenic 60.0%
TGGCTCCTCCTGTACAGGGA+GGG - chr2_1:11597608-11597627 None:intergenic 60.0%
ATGGCTCCTCCTGTACAGGG+AGG - chr2_1:11597609-11597628 None:intergenic 60.0%
TGCTGCGACTCTTTCCGAGC+GGG + chr2_1:11597705-11597724 Msa0194990:CDS 60.0%
GAGCGGGCCTGGATTCATTG+TGG + chr2_1:11597721-11597740 Msa0194990:CDS 60.0%
GCTGCTCTTCGTCATGCTGC+TGG + chr2_1:11597779-11597798 Msa0194990:CDS 60.0%
! GTCGTCCTCGGCTTGTTTCC+GGG + chr2_1:11597983-11598002 Msa0194990:intron 60.0%
GAGTACCCGGAAACAAGCCG+AGG - chr2_1:11597991-11598010 None:intergenic 60.0%
GGGTCTCTGCGACACGACCA+TGG + chr2_1:11594949-11594968 Msa0194990:intron 65.0%
GGCTCCTCCTGTACAGGGAG+GGG - chr2_1:11597607-11597626 None:intergenic 65.0%
CGACTCTTTCCGAGCGGGCC+TGG + chr2_1:11597710-11597729 Msa0194990:CDS 70.0%
GCTGCTGGTCCGCTCTCTGC+TGG + chr2_1:11597794-11597813 Msa0194990:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11593752 11598598 11593752 ID=Msa0194990;Name=Msa0194990
chr2_1 mRNA 11593752 11598598 11593752 ID=Msa0194990-mRNA-1;Parent=Msa0194990;Name=Msa0194990-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.25|1|1|4|0|546
chr2_1 exon 11593752 11594911 11593752 ID=Msa0194990-mRNA-1:exon:5140;Parent=Msa0194990-mRNA-1
chr2_1 exon 11595856 11595994 11595856 ID=Msa0194990-mRNA-1:exon:5141;Parent=Msa0194990-mRNA-1
chr2_1 exon 11597695 11597815 11597695 ID=Msa0194990-mRNA-1:exon:5142;Parent=Msa0194990-mRNA-1
chr2_1 exon 11598378 11598598 11598378 ID=Msa0194990-mRNA-1:exon:5143;Parent=Msa0194990-mRNA-1
chr2_1 CDS 11593752 11594911 11593752 ID=Msa0194990-mRNA-1:cds;Parent=Msa0194990-mRNA-1
chr2_1 CDS 11595856 11595994 11595856 ID=Msa0194990-mRNA-1:cds;Parent=Msa0194990-mRNA-1
chr2_1 CDS 11597695 11597815 11597695 ID=Msa0194990-mRNA-1:cds;Parent=Msa0194990-mRNA-1
chr2_1 CDS 11598378 11598598 11598378 ID=Msa0194990-mRNA-1:cds;Parent=Msa0194990-mRNA-1
Gene Sequence

>Msa0194990

ATGTTTTGTTACTATCGCAAAGCATTGCTCTTCCCCAATAACCTCACATTCAGTTTCAAAACCCTAACAGTAACACAATCTTCATTTCTTCTTCATCTTCTCCAACCCTTTTCTTCTTCATCTCCCCAAAATCACACTTTCACAACCAACTATCTCATTCAAAATCTTGGATTATCACCAGAAACTGCTTCCAAACTCTCCAACAAAATTCAACTCAACGACTCACAAAAACCAGACTCAGTCCTTTCATTATTCAAATCACATGGCTTTTCAAACTCCCAGCTATCAACTCTCATCAAAACTCACCCAAAAATTCTCTCTTTAGATCCCAATAAAACCATTCTTCCCAAACTCAATTTTCTTCTCTCAAAGGGTGCTTCAAATTCAGACCTTGTTCAAATCATCACCAGAAATCCTGCTATCTTTTATAAAAGCTTGGAAAATACAATAACCCCTTGTTATCATTTTATCAAAAGATTCTTACTTTCTGATCAATCTACCATCGCATCTCTCAAAAACTGCACTTGTTTGCTTTATTCTAAAACCACGTCTCAGAATATTCAAATCCTGCTTCAAAATGGGGTTCCTGAGTCTAAAGTCCTTATTTTGTTTCGAAATTGGTATTCTATATTCGCTGAGAAGCCTTCAAGATTTGAGAAGGCATTGGTGGAAGTAAATGAATTAGGATTTAACCCCAAAACAACTGTTTTCATTGTTGCACTGCGTGCTAAAATTAATAAAAAAATCCTTTGGGAAAGGAAGATTGATGTGTATAAGAAATGGGGTTGGTCTGAAGAAAGTTTTGTCTCAGCATTTTTGAAGTATCCATGGTGTATGTTGGCATCTGTTCGTAAAATTGAGGCAGCAATGAAATTTTTTGTTGATCACATGGATTGGAAGCCTATTGTGCTTGCAAAACACCCAATACTTCTTTTGCTGAGTCTTGAGAAAAGGGTTATTCCTAGAGCTTTTGTCTTGAAATTTCTTGAGTCTAAAGGTTTGATTAAGGATGCTAAATTGGCTGGACCTTTCCAAATTTCTGAGTGTTTGTTTTTGAAGAAGTTTGTGTATTGCTTCGAGGAAGAAGCTTCTCAACTGTTGAAGTTGTACGAAGAGAAAAAAGATGTTTCCAATAGGATGTTGAAAAAAGATTTTAAGCCTGATACTTCTTCAGATGTTTGGCTTATGAAGGAATATGGAAATAAAGATTCTTGGACTAAATTGTTATGTGTTCCTTACATGGGAGATGTTGGGTCGTATCTTTATACCAAGGCACTTTATCTTACTGAGGATGACCAAACATTTAATTTGCTGCGACTCTTTCCGAGCGGGCCTGGATTCATTGTGGAGTTTCACGGCAGTCCTTTTTCCTCCTGCTTCTTTGCTGCTCTTCGTCATGCTGCTGGTCCGCTCTCTGCTGAGAAGCTGGTTGTGTCCACACCTGTACACTCTAAGGTTCTATCAATATCTTCCGCTGCTTCATCTTCAATTCGAAGGGGCTTTATTGATGCGAGAACAACGCCACCTGCTACTCTTCCTAGAAAGTATACACGTAGAGGCTTGGCGTCAATGAGAGGTGCCGCAGATAGAAGAGTATTTGTGCCGGGAAGAAAAGGAGGAAAGGTAAGGAAGGGCATCTAG
Protein sequence

>Msa0194990

MFCYYRKALLFPNNLTFSFKTLTVTQSSFLLHLLQPFSSSSPQNHTFTTNYLIQNLGLSPETASKLSNKIQLNDSQKPDSVLSLFKSHGFSNSQLSTLIKTHPKILSLDPNKTILPKLNFLLSKGASNSDLVQIITRNPAIFYKSLENTITPCYHFIKRFLLSDQSTIASLKNCTCLLYSKTTSQNIQILLQNGVPESKVLILFRNWYSIFAEKPSRFEKALVEVNELGFNPKTTVFIVALRAKINKKILWERKIDVYKKWGWSEESFVSAFLKYPWCMLASVRKIEAAMKFFVDHMDWKPIVLAKHPILLLLSLEKRVIPRAFVLKFLESKGLIKDAKLAGPFQISECLFLKKFVYCFEEEASQLLKLYEEKKDVSNRMLKKDFKPDTSSDVWLMKEYGNKDSWTKLLCVPYMGDVGSYLYTKALYLTEDDQTFNLLRLFPSGPGFIVEFHGSPFSSCFFAALRHAAGPLSAEKLVVSTPVHSKVLSISSAASSSIRRGFIDARTTPPATLPRKYTRRGLASMRGAADRRVFVPGRKGGKVRKGI*