Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198000 | XP_013444615.1 | 88.025 | 476 | 29 | 1 | 16 | 463 | 522 | 997 | 0.0 | 826 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198000 | sp|Q7XA40|RGA3_SOLBU | 27.378 | 431 | 237 | 15 | 34 | 407 | 556 | 967 | 1.08e-12 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198000 | A0A072TYL3 | 88.025 | 476 | 29 | 1 | 16 | 463 | 522 | 997 | 0.0 | 826 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198000 | Msa1316590 | 0.930312 | 1.966177e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198000 | MtrunA17_Chr8g0346831 | 88.025 | 476 | 29 | 1 | 16 | 463 | 522 | 997 | 0.0 | 826 |
| Msa0198000 | MtrunA17_Chr8g0338431 | 63.677 | 446 | 129 | 5 | 10 | 422 | 73 | 518 | 0.0 | 518 |
| Msa0198000 | MtrunA17_Chr6g0471941 | 56.659 | 443 | 160 | 5 | 10 | 422 | 515 | 955 | 7.02e-150 | 451 |
| Msa0198000 | MtrunA17_Chr8g0338391 | 56.733 | 453 | 155 | 9 | 10 | 427 | 514 | 960 | 1.11e-140 | 427 |
| Msa0198000 | MtrunA17_Chr8g0338861 | 53.409 | 440 | 173 | 6 | 10 | 418 | 221 | 659 | 4.39e-138 | 412 |
| Msa0198000 | MtrunA17_Chr8g0352211 | 51.927 | 441 | 177 | 7 | 10 | 418 | 1512 | 1949 | 3.78e-122 | 392 |
| Msa0198000 | MtrunA17_Chr7g0218941 | 48.770 | 447 | 193 | 7 | 8 | 418 | 508 | 954 | 4.30e-112 | 352 |
| Msa0198000 | MtrunA17_Chr8g0338261 | 46.222 | 450 | 178 | 8 | 8 | 423 | 514 | 933 | 1.61e-105 | 334 |
| Msa0198000 | MtrunA17_Chr8g0337891 | 62.698 | 252 | 90 | 3 | 10 | 258 | 514 | 764 | 1.45e-88 | 286 |
| Msa0198000 | MtrunA17_Chr8g0338251 | 49.643 | 280 | 108 | 5 | 8 | 284 | 500 | 749 | 2.06e-64 | 221 |
| Msa0198000 | MtrunA17_Chr6g0475491 | 45.545 | 303 | 142 | 6 | 13 | 292 | 521 | 823 | 1.80e-57 | 203 |
| Msa0198000 | MtrunA17_Chr6g0456131 | 33.013 | 521 | 209 | 17 | 14 | 407 | 514 | 1021 | 4.38e-50 | 183 |
| Msa0198000 | MtrunA17_Chr2g0316291 | 29.264 | 557 | 230 | 17 | 7 | 407 | 516 | 1064 | 1.08e-46 | 173 |
| Msa0198000 | MtrunA17_Chr6g0456121 | 33.750 | 400 | 186 | 14 | 59 | 407 | 588 | 959 | 1.52e-37 | 146 |
| Msa0198000 | MtrunA17_Chr6g0456121 | 41.611 | 149 | 79 | 5 | 14 | 154 | 491 | 639 | 4.35e-16 | 81.3 |
| Msa0198000 | MtrunA17_Chr8g0338671 | 47.644 | 191 | 94 | 4 | 12 | 196 | 402 | 592 | 1.75e-35 | 139 |
| Msa0198000 | MtrunA17_Chr8g0338361 | 60.550 | 109 | 41 | 1 | 10 | 116 | 381 | 489 | 4.32e-30 | 122 |
| Msa0198000 | MtrunA17_Chr5g0410301 | 28.501 | 407 | 219 | 12 | 34 | 385 | 567 | 956 | 1.33e-23 | 104 |
| Msa0198000 | MtrunA17_Chr5g0430641 | 27.078 | 421 | 222 | 13 | 51 | 407 | 589 | 988 | 1.19e-21 | 98.6 |
| Msa0198000 | MtrunA17_Chr8g0338621 | 46.094 | 128 | 68 | 1 | 13 | 139 | 515 | 642 | 2.79e-21 | 97.1 |
| Msa0198000 | MtrunA17_Chr1g0155321 | 26.303 | 422 | 209 | 15 | 59 | 407 | 593 | 985 | 3.41e-20 | 94.0 |
| Msa0198000 | MtrunA17_Chr5g0431051 | 27.804 | 428 | 212 | 16 | 59 | 425 | 600 | 991 | 3.27e-19 | 90.9 |
| Msa0198000 | MtrunA17_Chr5g0410161 | 26.190 | 336 | 164 | 8 | 149 | 407 | 884 | 1212 | 7.44e-19 | 90.1 |
| Msa0198000 | MtrunA17_Chr5g0410481 | 25.659 | 417 | 212 | 12 | 57 | 410 | 574 | 955 | 7.64e-19 | 89.7 |
| Msa0198000 | MtrunA17_Chr5g0410351 | 26.338 | 467 | 211 | 14 | 57 | 404 | 584 | 1036 | 1.70e-18 | 89.0 |
| Msa0198000 | MtrunA17_Chr5g0430721 | 27.363 | 402 | 215 | 17 | 54 | 408 | 660 | 1031 | 2.54e-17 | 85.1 |
| Msa0198000 | MtrunA17_Chr5g0410261 | 25.995 | 427 | 208 | 11 | 57 | 407 | 594 | 988 | 3.65e-17 | 84.7 |
| Msa0198000 | MtrunA17_Chr7g0244231 | 26.712 | 438 | 223 | 17 | 59 | 421 | 590 | 1004 | 7.09e-17 | 83.6 |
| Msa0198000 | MtrunA17_Chr5g0415471 | 27.273 | 396 | 204 | 18 | 64 | 407 | 616 | 979 | 1.92e-16 | 82.4 |
| Msa0198000 | MtrunA17_Chr5g0429961 | 27.251 | 411 | 193 | 16 | 59 | 407 | 595 | 961 | 2.20e-16 | 82.0 |
| Msa0198000 | MtrunA17_Chr5g0430141 | 25.850 | 441 | 223 | 16 | 59 | 421 | 600 | 1014 | 4.76e-16 | 81.3 |
| Msa0198000 | MtrunA17_Chr5g0410401 | 26.879 | 346 | 164 | 10 | 59 | 323 | 462 | 799 | 1.03e-15 | 80.1 |
| Msa0198000 | MtrunA17_Chr5g0414301 | 27.778 | 396 | 196 | 13 | 64 | 407 | 165 | 522 | 2.66e-15 | 78.2 |
| Msa0198000 | MtrunA17_Chr4g0027251 | 24.858 | 527 | 252 | 19 | 10 | 407 | 508 | 1019 | 3.69e-15 | 78.2 |
| Msa0198000 | MtrunA17_Chr3g0087581 | 27.857 | 420 | 209 | 17 | 67 | 409 | 616 | 1018 | 8.02e-15 | 77.4 |
| Msa0198000 | MtrunA17_Chr5g0430341 | 27.182 | 401 | 206 | 15 | 59 | 407 | 142 | 508 | 1.34e-14 | 75.9 |
| Msa0198000 | MtrunA17_Chr4g0071011 | 26.214 | 412 | 220 | 14 | 59 | 407 | 89 | 479 | 3.11e-14 | 74.7 |
| Msa0198000 | MtrunA17_Chr5g0430511 | 28.819 | 288 | 161 | 10 | 155 | 421 | 743 | 1007 | 7.25e-14 | 74.3 |
| Msa0198000 | MtrunA17_Chr3g0087301 | 22.970 | 505 | 246 | 15 | 59 | 429 | 590 | 1085 | 9.46e-14 | 73.9 |
| Msa0198000 | MtrunA17_Chr3g0085651 | 27.991 | 443 | 219 | 21 | 31 | 407 | 591 | 999 | 1.26e-13 | 73.6 |
| Msa0198000 | MtrunA17_Chr5g0430291 | 26.291 | 426 | 231 | 15 | 59 | 416 | 598 | 1008 | 1.60e-13 | 73.2 |
| Msa0198000 | MtrunA17_Chr5g0430621 | 30.147 | 272 | 154 | 12 | 152 | 407 | 737 | 988 | 1.95e-13 | 72.8 |
| Msa0198000 | MtrunA17_Chr3g0086221 | 25.059 | 427 | 221 | 16 | 67 | 412 | 614 | 1022 | 3.26e-13 | 72.4 |
| Msa0198000 | MtrunA17_Chr6g0470001 | 24.634 | 410 | 231 | 15 | 59 | 401 | 202 | 600 | 3.80e-13 | 71.6 |
| Msa0198000 | MtrunA17_Chr6g0470081 | 23.855 | 415 | 232 | 14 | 59 | 403 | 595 | 995 | 4.27e-13 | 72.0 |
| Msa0198000 | MtrunA17_Chr3g0085451 | 28.306 | 431 | 247 | 23 | 4 | 404 | 488 | 886 | 4.54e-13 | 71.6 |
| Msa0198000 | MtrunA17_Chr1g0155991 | 27.541 | 305 | 156 | 13 | 151 | 421 | 735 | 1008 | 5.12e-13 | 71.6 |
| Msa0198000 | MtrunA17_Chr3g0087541 | 25.758 | 462 | 260 | 20 | 24 | 409 | 585 | 1039 | 5.89e-13 | 71.6 |
| Msa0198000 | MtrunA17_Chr6g0468151 | 24.752 | 404 | 221 | 16 | 59 | 407 | 597 | 972 | 9.97e-13 | 70.9 |
| Msa0198000 | MtrunA17_Chr8g0363851 | 24.468 | 376 | 211 | 12 | 54 | 407 | 504 | 828 | 1.09e-12 | 70.5 |
| Msa0198000 | MtrunA17_Chr3g0086071 | 27.311 | 476 | 225 | 22 | 38 | 412 | 185 | 640 | 1.13e-12 | 70.1 |
| Msa0198000 | MtrunA17_Chr5g0430901 | 29.747 | 316 | 177 | 14 | 113 | 399 | 562 | 861 | 1.22e-12 | 70.5 |
| Msa0198000 | MtrunA17_Chr5g0430581 | 29.758 | 289 | 140 | 11 | 155 | 421 | 731 | 978 | 1.55e-12 | 70.1 |
| Msa0198000 | MtrunA17_Chr3g0089441 | 25.112 | 446 | 226 | 18 | 59 | 421 | 102 | 522 | 4.87e-12 | 68.2 |
| Msa0198000 | MtrunA17_Chr3g0089211 | 25.926 | 432 | 228 | 22 | 58 | 428 | 665 | 1065 | 9.34e-12 | 67.8 |
| Msa0198000 | MtrunA17_Chr3g0087701 | 28.916 | 415 | 216 | 23 | 67 | 412 | 619 | 1023 | 9.92e-12 | 67.4 |
| Msa0198000 | MtrunA17_Chr4g0025391 | 26.617 | 402 | 227 | 17 | 59 | 421 | 641 | 1013 | 1.14e-11 | 67.4 |
| Msa0198000 | MtrunA17_Chr5g0433771 | 25.698 | 358 | 168 | 10 | 57 | 411 | 572 | 834 | 1.16e-11 | 67.0 |
| Msa0198000 | MtrunA17_Chr3g0091121 | 26.698 | 427 | 228 | 22 | 34 | 404 | 232 | 629 | 2.23e-11 | 66.2 |
| Msa0198000 | MtrunA17_Chr1g0189551 | 26.623 | 308 | 184 | 12 | 118 | 416 | 580 | 854 | 2.87e-11 | 65.9 |
| Msa0198000 | MtrunA17_Chr3g0084061 | 28.186 | 408 | 207 | 21 | 64 | 409 | 647 | 1030 | 4.18e-11 | 65.5 |
| Msa0198000 | MtrunA17_Chr3g0086621 | 26.652 | 469 | 237 | 21 | 38 | 412 | 565 | 1020 | 5.90e-11 | 65.1 |
| Msa0198000 | MtrunA17_Chr3g0089421 | 25.926 | 432 | 218 | 20 | 58 | 421 | 620 | 1017 | 5.98e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198000 | AT1G69550.1 | 28.775 | 351 | 196 | 11 | 59 | 404 | 904 | 1205 | 3.42e-12 | 69.7 |
Find 92 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAGAGTCTAAAATTTA+TGG | 0.131908 | 2_1:-16455287 | Msa0198000:CDS |
| AATGGTCAATTGTGGAAATT+TGG | 0.163930 | 2_1:-16454753 | Msa0198000:CDS |
| CGAATCATTCTTCCCATCTT+TGG | 0.175026 | 2_1:-16455305 | Msa0198000:CDS |
| ATGCTCAAATCTTAGGAAAT+TGG | 0.220564 | 2_1:-16455010 | Msa0198000:intron |
| TGGTTCCCATTACACTATTT+TGG | 0.225419 | 2_1:-16455833 | Msa0198000:CDS |
| GTTTCCTCGTCTATCTATAT+TGG | 0.246515 | 2_1:-16455182 | Msa0198000:CDS |
| TAAGATATCTGAATTTATTA+AGG | 0.264206 | 2_1:-16455705 | Msa0198000:CDS |
| CGTCTATCTATATTGGAAAT+TGG | 0.283922 | 2_1:-16455175 | Msa0198000:CDS |
| TCCAATATGGCAATGTATTC+AGG | 0.291549 | 2_1:+16454807 | None:intergenic |
| GGCACCTTGAGATTAATAAT+TGG | 0.310790 | 2_1:-16455561 | Msa0198000:CDS |
| ACTTGAAACGTTACTGAGTT+TGG | 0.320371 | 2_1:+16457624 | None:intergenic |
| GCCTGAATACATTGCCATAT+TGG | 0.322941 | 2_1:-16454808 | Msa0198000:CDS |
| CTTCGAACTTTGATTATGTT+TGG | 0.324077 | 2_1:-16455853 | Msa0198000:CDS |
| CACTCTTAGGTGCAGAATAC+TGG | 0.325272 | 2_1:-16454667 | Msa0198000:CDS |
| TTGGAGAGTCTAAAATTTAT+GGG | 0.329406 | 2_1:-16455286 | Msa0198000:CDS |
| TCTTGTTACAGGAAGTGTTT+TGG | 0.334510 | 2_1:-16454478 | Msa0198000:intron |
| TCCATCCAAAATAGTGTAAT+GGG | 0.356863 | 2_1:+16455828 | None:intergenic |
| TTGCTACTAGCCTCATTAAT+AGG | 0.363854 | 2_1:-16457543 | Msa0198000:intron |
| ATCATTGGATGCCCACTCTT+AGG | 0.378303 | 2_1:-16454680 | Msa0198000:CDS |
| CATTTGTTTGTTGGAATCAA+TGG | 0.384149 | 2_1:-16455887 | Msa0198000:CDS |
| TTCCTTAAGTCACTTGAGTT+AGG | 0.393687 | 2_1:-16455376 | Msa0198000:CDS |
| GTTAGGTTACCTCGATGAAT+TGG | 0.396713 | 2_1:-16455359 | Msa0198000:CDS |
| AACCTAACTCAAGTGACTTA+AGG | 0.405830 | 2_1:+16455374 | None:intergenic |
| ATTTGAAGCCATTTGTTTGT+TGG | 0.406270 | 2_1:-16455896 | Msa0198000:CDS |
| TTACGTACCTTAGAAATCAT+TGG | 0.410148 | 2_1:-16454695 | Msa0198000:CDS |
| ATCACTTCAACATATCAAAA+TGG | 0.411388 | 2_1:-16454771 | Msa0198000:CDS |
| GATAGTCTTGTCTTAATGTC+TGG | 0.411532 | 2_1:+16455118 | None:intergenic |
| GAGAGGTTGCATATCCAATA+TGG | 0.416396 | 2_1:+16454794 | None:intergenic |
| CTCCATCCAAAATAGTGTAA+TGG | 0.422185 | 2_1:+16455827 | None:intergenic |
| GTAAGTCGAGAGATTCCTTC+AGG | 0.422193 | 2_1:+16454722 | None:intergenic |
| TTCTTCTTTGAGCAAGCTAT+CGG | 0.426029 | 2_1:-16455752 | Msa0198000:CDS |
| TCTCAAAATTAATCAATTTG+AGG | 0.426620 | 2_1:-16455582 | Msa0198000:CDS |
| TGGGCATCCAATGATTTCTA+AGG | 0.428737 | 2_1:+16454688 | None:intergenic |
| AAGGTGATTGTTTGGAGAGA+AGG | 0.429155 | 2_1:+16454845 | None:intergenic |
| GGAAATTGGCGAAGTTAGTT+CGG | 0.440380 | 2_1:-16454996 | Msa0198000:CDS |
| TCATAAAAGAGTTGTTGTTT+CGG | 0.443746 | 2_1:+16454434 | None:intergenic |
| TCTGAGAGGATGGAGGAGGA+TGG | 0.444763 | 2_1:-16455254 | Msa0198000:CDS |
| AAGAATGATTCGTGAAGAAT+AGG | 0.449416 | 2_1:+16455316 | None:intergenic |
| AGGCTAGTAGCAACACCATA+TGG | 0.468350 | 2_1:+16457553 | None:intergenic |
| GTTGAAATGTGGTTTAAAGA+TGG | 0.474225 | 2_1:-16454881 | Msa0198000:CDS |
| GTTGTAATATTCTGAGAGGA+TGG | 0.476978 | 2_1:-16455264 | Msa0198000:CDS |
| CATTGATTCCAACAAACAAA+TGG | 0.477242 | 2_1:+16455888 | None:intergenic |
| ATGAGTCAGGTTATTCTGTA+CGG | 0.479594 | 2_1:-16454415 | Msa0198000:CDS |
| TATTGGAAATTGGTGGGTGC+TGG | 0.480685 | 2_1:-16455165 | Msa0198000:CDS |
| CTGAGAGGATGGAGGAGGAT+GGG | 0.482117 | 2_1:-16455253 | Msa0198000:CDS |
| GGTAATGAAGGAGCAAGAAA+TGG | 0.484022 | 2_1:+16457651 | None:intergenic |
| TGAGTCAGGTTATTCTGTAC+GGG | 0.484927 | 2_1:-16454414 | Msa0198000:CDS |
| GTAACGTTTCAAGTTTGCAT+TGG | 0.486181 | 2_1:-16457615 | Msa0198000:five_prime_UTR |
| GATTTCTAAGGTACGTAAGT+TGG | 0.487705 | 2_1:+16454700 | None:intergenic |
| TGTGAGTGGAGATAGCCATT+TGG | 0.491314 | 2_1:+16455468 | None:intergenic |
| GGAGAGAAGGAAGGCAATTG+AGG | 0.507235 | 2_1:+16454858 | None:intergenic |
| TATCTATATTGGAAATTGGT+GGG | 0.515809 | 2_1:-16455171 | Msa0198000:CDS |
| AATTAAGTTACCTATTAATG+AGG | 0.519543 | 2_1:+16457533 | None:intergenic |
| ATATCTCTTGATTGTTGTCG+AGG | 0.522645 | 2_1:-16455433 | Msa0198000:CDS |
| CTGAATTTATTAAGGTGTCA+TGG | 0.526209 | 2_1:-16455697 | Msa0198000:CDS |
| ATATTCTGAGAGGATGGAGG+AGG | 0.529902 | 2_1:-16455258 | Msa0198000:CDS |
| ACAGACCATAAAAGTTTCAT+CGG | 0.533117 | 2_1:-16455632 | Msa0198000:CDS |
| AACTCAAGTGACTTAAGGAA+TGG | 0.537816 | 2_1:+16455379 | None:intergenic |
| TCTTCTTTGAGCAAGCTATC+GGG | 0.538892 | 2_1:-16455751 | Msa0198000:CDS |
| CTATCTATATTGGAAATTGG+TGG | 0.544552 | 2_1:-16455172 | Msa0198000:CDS |
| TAAATGCTTCAATTTGTCAA+CGG | 0.547021 | 2_1:+16455726 | None:intergenic |
| TTCAAAGAAAAGACACCAGA+TGG | 0.548337 | 2_1:-16455535 | Msa0198000:CDS |
| TTGAGCATACAACAATATGA+TGG | 0.552961 | 2_1:-16455502 | Msa0198000:CDS |
| CATATCAAAATGGTCAATTG+TGG | 0.562468 | 2_1:-16454761 | Msa0198000:CDS |
| TTTGGCATGAGGAAGACAAT+GGG | 0.562894 | 2_1:-16454460 | Msa0198000:CDS |
| AGGTCCAATTATTAATCTCA+AGG | 0.563072 | 2_1:+16455557 | None:intergenic |
| AACAACTAGCATCATTAGAC+AGG | 0.567187 | 2_1:-16454630 | Msa0198000:intron |
| ATGGCCGAGCAAATTCCATA+TGG | 0.567483 | 2_1:-16457568 | Msa0198000:CDS |
| AATTCAAATGATACATGCAC+AGG | 0.567527 | 2_1:+16455916 | None:intergenic |
| AATGGAAGACGTTCCAGTGG+TGG | 0.570499 | 2_1:+16455397 | None:intergenic |
| CAGTATTCTGCACCTAAGAG+TGG | 0.574599 | 2_1:+16454668 | None:intergenic |
| TGATTGTTTGGAGAGAAGGA+AGG | 0.584705 | 2_1:+16454849 | None:intergenic |
| ATTTCAATTATATTTGTGAG+TGG | 0.585965 | 2_1:+16455454 | None:intergenic |
| AACACCATATGGAATTTGCT+CGG | 0.587106 | 2_1:+16457564 | None:intergenic |
| AATTTGGCACTGCTTCCTGA+AGG | 0.587213 | 2_1:-16454737 | Msa0198000:CDS |
| AATTTCAAGTAGTTGAAATG+TGG | 0.594344 | 2_1:-16454892 | Msa0198000:CDS |
| GAGTTTGGTGATGGTAATGA+AGG | 0.594871 | 2_1:+16457639 | None:intergenic |
| ATGGAAGACGTTCCAGTGGT+GGG | 0.596864 | 2_1:+16455398 | None:intergenic |
| GTAATATTCTGAGAGGATGG+AGG | 0.596940 | 2_1:-16455261 | Msa0198000:CDS |
| AACGTTACTGAGTTTGGTGA+TGG | 0.611634 | 2_1:+16457630 | None:intergenic |
| TTTACAATATCTCCCACCAC+TGG | 0.615383 | 2_1:-16455410 | Msa0198000:CDS |
| ATGGGTTGTAATATTCTGAG+AGG | 0.621109 | 2_1:-16455268 | Msa0198000:CDS |
| AGTATTCTGCACCTAAGAGT+GGG | 0.629170 | 2_1:+16454669 | None:intergenic |
| ACGGGAACGAAACAAACGAT+GGG | 0.647225 | 2_1:-16454396 | Msa0198000:CDS |
| TGATATGTTGAAGTGATGAG+AGG | 0.647558 | 2_1:+16454777 | None:intergenic |
| ATAGATAGACGAGGAAACTG+AGG | 0.648070 | 2_1:+16455187 | None:intergenic |
| TACGGGAACGAAACAAACGA+TGG | 0.662172 | 2_1:-16454397 | Msa0198000:CDS |
| AATGAAGGAGCAAGAAATGG+AGG | 0.662195 | 2_1:+16457654 | None:intergenic |
| AGGAATGGAAGACGTTCCAG+TGG | 0.688763 | 2_1:+16455394 | None:intergenic |
| TTGGCATGAGGAAGACAATG+GGG | 0.706294 | 2_1:-16454459 | Msa0198000:CDS |
| ATTTCCAATATAGATAGACG+AGG | 0.742305 | 2_1:+16455178 | None:intergenic |
| ATATGCACTCCAATTCATCG+AGG | 0.786275 | 2_1:+16455350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAGAAAATATTAACAAAT+TGG | + | chr2_1:16455923-16455942 | None:intergenic | 15.0% |
| !! | AATAAAGATAGTGATATAAA+TGG | - | chr2_1:16455972-16455991 | Msa0198000:intron | 15.0% |
| !! | TAAGATATCTGAATTTATTA+AGG | - | chr2_1:16456303-16456322 | Msa0198000:intron | 15.0% |
| !!! | AAAATTCCATTTTATGTTTT+TGG | + | chr2_1:16457460-16457479 | None:intergenic | 15.0% |
| !! | AATTAAGTTACCTATTAATG+AGG | + | chr2_1:16454478-16454497 | None:intergenic | 20.0% |
| !!! | AAACTTATATTTTCTATGAC+AGG | - | chr2_1:16454551-16454570 | Msa0198000:intron | 20.0% |
| !! | GAGATTGAAAAAATACAAAA+AGG | - | chr2_1:16454889-16454908 | Msa0198000:CDS | 20.0% |
| !! | TATTAAAGAAAATTGCATCT+TGG | - | chr2_1:16455532-16455551 | Msa0198000:CDS | 20.0% |
| !! | ATTAAAGAAAATTGCATCTT+GGG | - | chr2_1:16455533-16455552 | Msa0198000:CDS | 20.0% |
| !! | TCTCAAAATTAATCAATTTG+AGG | - | chr2_1:16456426-16456445 | Msa0198000:intron | 20.0% |
| !! | ATTTCAATTATATTTGTGAG+TGG | + | chr2_1:16456557-16456576 | None:intergenic | 20.0% |
| !!! | ATTCTCAAAGTTTTGATAAT+AGG | - | chr2_1:16457427-16457446 | Msa0198000:intron | 20.0% |
| !!! | TATGCTTTCTTTTTGAAGAA+TGG | - | chr2_1:16454421-16454440 | Msa0198000:CDS | 25.0% |
| !! | TAATTTTCATCTACCTTGTA+TGG | - | chr2_1:16454493-16454512 | Msa0198000:intron | 25.0% |
| ! | TAAACAAAAACAACCATACA+AGG | + | chr2_1:16454509-16454528 | None:intergenic | 25.0% |
| !! | TATATTTTCTATGACAGGTT+AGG | - | chr2_1:16454556-16454575 | Msa0198000:intron | 25.0% |
| !! | ATATTTTCTATGACAGGTTA+GGG | - | chr2_1:16454557-16454576 | Msa0198000:intron | 25.0% |
| ! | AAAATCATGCTGTTCAAAAT+TGG | - | chr2_1:16454701-16454720 | Msa0198000:CDS | 25.0% |
| !!! | CTAGATGAATTTGTTATTGA+AGG | - | chr2_1:16454766-16454785 | Msa0198000:CDS | 25.0% |
| !!! | CTTTGTTACTTTGTTCTTAT+GGG | + | chr2_1:16454815-16454834 | None:intergenic | 25.0% |
| !! | AATTTCTTTTCGTCGTAAAA+TGG | - | chr2_1:16454861-16454880 | Msa0198000:CDS | 25.0% |
| !!! | AATTGATGATGCATTATCAT+TGG | - | chr2_1:16455275-16455294 | Msa0198000:CDS | 25.0% |
| ! | GAATGAGAGTTATGAAAAAT+GGG | - | chr2_1:16455368-16455387 | Msa0198000:CDS | 25.0% |
| ! | TACAAAGTAAAAGTGAAGAA+AGG | - | chr2_1:16455658-16455677 | Msa0198000:CDS | 25.0% |
| ! | ACAAAGTAAAAGTGAAGAAA+GGG | - | chr2_1:16455659-16455678 | Msa0198000:CDS | 25.0% |
| !! | AGTTATGGTAACTCAATTTT+AGG | + | chr2_1:16455752-16455771 | None:intergenic | 25.0% |
| ! | TTATTGCTCTTTATATCCTA+AGG | - | chr2_1:16455800-16455819 | Msa0198000:CDS | 25.0% |
| !! | CTTTATTCAATTTTGCATCT+TGG | + | chr2_1:16455959-16455978 | None:intergenic | 25.0% |
| !!! | TTGTTGTTACTTTGATAGTA+AGG | - | chr2_1:16456049-16456068 | Msa0198000:intron | 25.0% |
| ! | TAAATGCTTCAATTTGTCAA+CGG | + | chr2_1:16456285-16456304 | None:intergenic | 25.0% |
| !! | TTTGGAGAGTCTAAAATTTA+TGG | - | chr2_1:16456721-16456740 | Msa0198000:intron | 25.0% |
| !! | TTGGAGAGTCTAAAATTTAT+GGG | - | chr2_1:16456722-16456741 | Msa0198000:intron | 25.0% |
| ! | TATCTATATTGGAAATTGGT+GGG | - | chr2_1:16456837-16456856 | Msa0198000:intron | 25.0% |
| !! | AATTTCAAGTAGTTGAAATG+TGG | - | chr2_1:16457116-16457135 | Msa0198000:intron | 25.0% |
| !!! | AACTTTTAAAGGTGATTGTT+TGG | + | chr2_1:16457174-16457193 | None:intergenic | 25.0% |
| ! | ATCACTTCAACATATCAAAA+TGG | - | chr2_1:16457237-16457256 | Msa0198000:intron | 25.0% |
| ! | CTGAAACCAAAAACATAAAA+TGG | - | chr2_1:16457451-16457470 | Msa0198000:intron | 25.0% |
| !!! | AAAATGGAATTTTGTTTGTG+TGG | - | chr2_1:16457467-16457486 | Msa0198000:intron | 25.0% |
| !!! | TTACTTTGTTTTCTTGTTAC+AGG | - | chr2_1:16457519-16457538 | Msa0198000:intron | 25.0% |
| !!! | TCATAAAAGAGTTGTTGTTT+CGG | + | chr2_1:16457577-16457596 | None:intergenic | 25.0% |
| TAATGGAGTTATGAATGAAC+TGG | - | chr2_1:16454609-16454628 | Msa0198000:intron | 30.0% | |
| CTGTTCAAAATTGGATAAGA+AGG | - | chr2_1:16454710-16454729 | Msa0198000:CDS | 30.0% | |
| !! | AATTTGTTATTGAAGGTGTG+AGG | - | chr2_1:16454773-16454792 | Msa0198000:CDS | 30.0% |
| !! | CCTTTGTTACTTTGTTCTTA+TGG | + | chr2_1:16454816-16454835 | None:intergenic | 30.0% |
| CCATAAGAACAAAGTAACAA+AGG | - | chr2_1:16454813-16454832 | Msa0198000:CDS | 30.0% | |
| ATGTAGTGAAAGATATGACT+GGG | - | chr2_1:16454920-16454939 | Msa0198000:CDS | 30.0% | |
| TTCAACAAACTAACTGTGTA+AGG | - | chr2_1:16454971-16454990 | Msa0198000:CDS | 30.0% | |
| !! | AGAAACTAGTTCTTTTGTGT+TGG | - | chr2_1:16454996-16455015 | Msa0198000:CDS | 30.0% |
| ! | TAGTTCTTTTGTGTTGGAAT+CGG | - | chr2_1:16455002-16455021 | Msa0198000:intron | 30.0% |
| !!! | GAGACATTTTGATTTTCATG+TGG | + | chr2_1:16455081-16455100 | None:intergenic | 30.0% |
| ! | TTGATTGCTATTGTTGGATT+TGG | - | chr2_1:16455102-16455121 | Msa0198000:CDS | 30.0% |
| TCAGATGATTTATAGTGATG+TGG | - | chr2_1:16455149-16455168 | Msa0198000:CDS | 30.0% | |
| ! | TGCAAAACTTCTTTGAAAAG+AGG | - | chr2_1:16455175-16455194 | Msa0198000:CDS | 30.0% |
| AACTATTGTGAAGAACATGT+TGG | - | chr2_1:16455233-16455252 | Msa0198000:CDS | 30.0% | |
| ! | TGCATCATCAATTTTGTTCT+TGG | + | chr2_1:16455268-16455287 | None:intergenic | 30.0% |
| AACTAACAAGTATCTCTTAC+CGG | + | chr2_1:16455334-16455353 | None:intergenic | 30.0% | |
| !! | TGTTAGTTCTAGATGACATT+TGG | - | chr2_1:16455346-16455365 | Msa0198000:CDS | 30.0% |
| GGAATGAGAGTTATGAAAAA+TGG | - | chr2_1:16455367-16455386 | Msa0198000:CDS | 30.0% | |
| CCAAACCATTCAAAACATAA+GGG | + | chr2_1:16455491-16455510 | None:intergenic | 30.0% | |
| ACCAAACCATTCAAAACATA+AGG | + | chr2_1:16455492-16455511 | None:intergenic | 30.0% | |
| AATAAACTCCAAGATTCTTC+TGG | + | chr2_1:16455516-16455535 | None:intergenic | 30.0% | |
| AACAGGACTATTGAATCAAT+TGG | - | chr2_1:16455573-16455592 | Msa0198000:CDS | 30.0% | |
| ! | ATGTCCTACAAGGTAATTTT+TGG | - | chr2_1:16455691-16455710 | Msa0198000:CDS | 30.0% |
| AGTTCCAAAAATTACCTTGT+AGG | + | chr2_1:16455698-16455717 | None:intergenic | 30.0% | |
| !!! | TAATTTTTGGAACTTGTGTG+AGG | - | chr2_1:16455704-16455723 | Msa0198000:CDS | 30.0% |
| CTCTTTATATCCTAAGGATT+GGG | - | chr2_1:16455806-16455825 | Msa0198000:CDS | 30.0% | |
| TATCTTGACTGTTCAATTGA+AGG | - | chr2_1:16455873-16455892 | Msa0198000:CDS | 30.0% | |
| ATCTTGACTGTTCAATTGAA+GGG | - | chr2_1:16455874-16455893 | Msa0198000:CDS | 30.0% | |
| AATTCAAATGATACATGCAC+AGG | + | chr2_1:16456095-16456114 | None:intergenic | 30.0% | |
| ! | ATTTGAAGCCATTTGTTTGT+TGG | - | chr2_1:16456112-16456131 | Msa0198000:intron | 30.0% |
| !! | CATTGATTCCAACAAACAAA+TGG | + | chr2_1:16456123-16456142 | None:intergenic | 30.0% |
| ! | CATTTGTTTGTTGGAATCAA+TGG | - | chr2_1:16456121-16456140 | Msa0198000:intron | 30.0% |
| CTTCGAACTTTGATTATGTT+TGG | - | chr2_1:16456155-16456174 | Msa0198000:intron | 30.0% | |
| TCCATCCAAAATAGTGTAAT+GGG | + | chr2_1:16456183-16456202 | None:intergenic | 30.0% | |
| ! | CTGAATTTATTAAGGTGTCA+TGG | - | chr2_1:16456311-16456330 | Msa0198000:intron | 30.0% |
| ! | GAAAGTCTTCCCAAATTTTT+AGG | - | chr2_1:16456338-16456357 | Msa0198000:intron | 30.0% |
| ACTAGACTGCCTAAAAATTT+GGG | + | chr2_1:16456350-16456369 | None:intergenic | 30.0% | |
| AACTAGACTGCCTAAAAATT+TGG | + | chr2_1:16456351-16456370 | None:intergenic | 30.0% | |
| ACAGACCATAAAAGTTTCAT+CGG | - | chr2_1:16456376-16456395 | Msa0198000:intron | 30.0% | |
| ! | TTCATCCGATGAAACTTTTA+TGG | + | chr2_1:16456384-16456403 | None:intergenic | 30.0% |
| AGGTCCAATTATTAATCTCA+AGG | + | chr2_1:16456454-16456473 | None:intergenic | 30.0% | |
| TTGAGCATACAACAATATGA+TGG | - | chr2_1:16456506-16456525 | Msa0198000:intron | 30.0% | |
| !! | ATGGTTCTATGTTTTCCAAA+TGG | - | chr2_1:16456525-16456544 | Msa0198000:intron | 30.0% |
| AAGAATGATTCGTGAAGAAT+AGG | + | chr2_1:16456695-16456714 | None:intergenic | 30.0% | |
| ! | ATTTTAGACTCTCCAAAGAT+GGG | + | chr2_1:16456718-16456737 | None:intergenic | 30.0% |
| ! | AATTTTAGACTCTCCAAAGA+TGG | + | chr2_1:16456719-16456738 | None:intergenic | 30.0% |
| ATTTCCAATATAGATAGACG+AGG | + | chr2_1:16456833-16456852 | None:intergenic | 30.0% | |
| CGTCTATCTATATTGGAAAT+TGG | - | chr2_1:16456833-16456852 | Msa0198000:intron | 30.0% | |
| CTATCTATATTGGAAATTGG+TGG | - | chr2_1:16456836-16456855 | Msa0198000:intron | 30.0% | |
| GTCTTAATGTCTGGAAAAAT+AGG | + | chr2_1:16456884-16456903 | None:intergenic | 30.0% | |
| AATTTCCTAAGATTTGAGCA+TGG | + | chr2_1:16456999-16457018 | None:intergenic | 30.0% | |
| ATGCTCAAATCTTAGGAAAT+TGG | - | chr2_1:16456998-16457017 | Msa0198000:intron | 30.0% | |
| TGAAAAAACTCCCAAAAGAT+TGG | - | chr2_1:16457038-16457057 | Msa0198000:intron | 30.0% | |
| ! | GATTTTGCAACCAATCTTTT+GGG | + | chr2_1:16457051-16457070 | None:intergenic | 30.0% |
| ! | AGATTTTGCAACCAATCTTT+TGG | + | chr2_1:16457052-16457071 | None:intergenic | 30.0% |
| GTTGAAATGTGGTTTAAAGA+TGG | - | chr2_1:16457127-16457146 | Msa0198000:intron | 30.0% | |
| CATATCAAAATGGTCAATTG+TGG | - | chr2_1:16457247-16457266 | Msa0198000:intron | 30.0% | |
| AATGGTCAATTGTGGAAATT+TGG | - | chr2_1:16457255-16457274 | Msa0198000:intron | 30.0% | |
| TTACGTACCTTAGAAATCAT+TGG | - | chr2_1:16457313-16457332 | Msa0198000:intron | 30.0% | |
| ! | GTGGTTTTCATTATAGAATG+TGG | - | chr2_1:16457486-16457505 | Msa0198000:intron | 30.0% |
| ACTTGAAACGTTACTGAGTT+TGG | + | chr2_1:16454387-16454406 | None:intergenic | 35.0% | |
| !! | GTAACGTTTCAAGTTTGCAT+TGG | - | chr2_1:16454393-16454412 | Msa0198000:CDS | 35.0% |
| ! | AACACCATATGGAATTTGCT+CGG | + | chr2_1:16454447-16454466 | None:intergenic | 35.0% |
| ! | TTGCTACTAGCCTCATTAAT+AGG | - | chr2_1:16454465-16454484 | Msa0198000:CDS | 35.0% |
| GAGTTATGAATGAACTGGAA+AGG | - | chr2_1:16454614-16454633 | Msa0198000:intron | 35.0% | |
| ! | CGACGAAAAGAAATTTTGCT+TGG | + | chr2_1:16454856-16454875 | None:intergenic | 35.0% |
| GATGTAGTGAAAGATATGAC+TGG | - | chr2_1:16454919-16454938 | Msa0198000:CDS | 35.0% | |
| GTTGAATCTAAACTCAAACG+TGG | - | chr2_1:16454942-16454961 | Msa0198000:CDS | 35.0% | |
| ! | GTCTCTTTGATTGCTATTGT+TGG | - | chr2_1:16455096-16455115 | Msa0198000:intron | 35.0% |
| ! | ATTGCTATTGTTGGATTTGG+TGG | - | chr2_1:16455105-16455124 | Msa0198000:CDS | 35.0% |
| !! | TATTGTTGGATTTGGTGGTT+TGG | - | chr2_1:16455110-16455129 | Msa0198000:CDS | 35.0% |
| !! | ATTGTTGGATTTGGTGGTTT+GGG | - | chr2_1:16455111-16455130 | Msa0198000:CDS | 35.0% |
| ! | ACTTCTTTGAAAAGAGGATG+TGG | - | chr2_1:16455181-16455200 | Msa0198000:CDS | 35.0% |
| ! | CTTCTTTGAAAAGAGGATGT+GGG | - | chr2_1:16455182-16455201 | Msa0198000:CDS | 35.0% |
| ! | AGTATCTCTTACCGGTTAAA+TGG | + | chr2_1:16455326-16455345 | None:intergenic | 35.0% |
| ! | ATGAAAAATGGGCTCAATTG+AGG | - | chr2_1:16455379-16455398 | Msa0198000:CDS | 35.0% |
| TTGAGGACATATTTGATGTG+TGG | - | chr2_1:16455396-16455415 | Msa0198000:CDS | 35.0% | |
| TGAGGACATATTTGATGTGT+GGG | - | chr2_1:16455397-16455416 | Msa0198000:CDS | 35.0% | |
| !! | AGTGTCCCTTATGTTTTGAA+TGG | - | chr2_1:16455483-16455502 | Msa0198000:CDS | 35.0% |
| !! | CCCTTATGTTTTGAATGGTT+TGG | - | chr2_1:16455488-16455507 | Msa0198000:CDS | 35.0% |
| GGACTATTGAATCAATTGGT+AGG | - | chr2_1:16455577-16455596 | Msa0198000:CDS | 35.0% | |
| ATCAATTGGTAGGAAGATAG+CGG | - | chr2_1:16455587-16455606 | Msa0198000:CDS | 35.0% | |
| TCCATTAGCAATTAGATCGT+TGG | - | chr2_1:16455626-16455645 | Msa0198000:CDS | 35.0% | |
| CCATTAGCAATTAGATCGTT+GGG | - | chr2_1:16455627-16455646 | Msa0198000:CDS | 35.0% | |
| !!! | TGGTAACTCAATTTTAGGAC+CGG | + | chr2_1:16455747-16455766 | None:intergenic | 35.0% |
| GCTCTTTATATCCTAAGGAT+TGG | - | chr2_1:16455805-16455824 | Msa0198000:CDS | 35.0% | |
| TTCTCAAATTCCCAATCCTT+AGG | + | chr2_1:16455819-16455838 | None:intergenic | 35.0% | |
| TAAGGATTGGGAATTTGAGA+AGG | - | chr2_1:16455818-16455837 | Msa0198000:CDS | 35.0% | |
| !! | AGGATGAGTTGATTCAAATG+TGG | - | chr2_1:16455838-16455857 | Msa0198000:CDS | 35.0% |
| !! | TGAGTTGATTCAAATGTGGA+TGG | - | chr2_1:16455842-16455861 | Msa0198000:CDS | 35.0% |
| ! | TGGTTCCCATTACACTATTT+TGG | - | chr2_1:16456175-16456194 | Msa0198000:intron | 35.0% |
| !! | TCCCATTACACTATTTTGGA+TGG | - | chr2_1:16456179-16456198 | Msa0198000:intron | 35.0% |
| CTCCATCCAAAATAGTGTAA+TGG | + | chr2_1:16456184-16456203 | None:intergenic | 35.0% | |
| !! | TTACACTATTTTGGATGGAG+AGG | - | chr2_1:16456184-16456203 | Msa0198000:intron | 35.0% |
| TTCTTCTTTGAGCAAGCTAT+CGG | - | chr2_1:16456256-16456275 | Msa0198000:intron | 35.0% | |
| GGCACCTTGAGATTAATAAT+TGG | - | chr2_1:16456447-16456466 | Msa0198000:intron | 35.0% | |
| ! | ATCTGGTGTCTTTTCTTTGA+AGG | + | chr2_1:16456474-16456493 | None:intergenic | 35.0% |
| TTCAAAGAAAAGACACCAGA+TGG | - | chr2_1:16456473-16456492 | Msa0198000:intron | 35.0% | |
| ! | CTCAATTTTCGAAATCCATC+TGG | + | chr2_1:16456491-16456510 | None:intergenic | 35.0% |
| ATATCTCTTGATTGTTGTCG+AGG | - | chr2_1:16456575-16456594 | Msa0198000:intron | 35.0% | |
| AACTCAAGTGACTTAAGGAA+TGG | + | chr2_1:16456632-16456651 | None:intergenic | 35.0% | |
| TTCCTTAAGTCACTTGAGTT+AGG | - | chr2_1:16456632-16456651 | Msa0198000:intron | 35.0% | |
| AACCTAACTCAAGTGACTTA+AGG | + | chr2_1:16456637-16456656 | None:intergenic | 35.0% | |
| ! | ATGGGTTGTAATATTCTGAG+AGG | - | chr2_1:16456740-16456759 | Msa0198000:intron | 35.0% |
| ! | GTTGTAATATTCTGAGAGGA+TGG | - | chr2_1:16456744-16456763 | Msa0198000:intron | 35.0% |
| GTTTCCTCGTCTATCTATAT+TGG | - | chr2_1:16456826-16456845 | Msa0198000:intron | 35.0% | |
| AATGTCTGGAAAAATAGGCA+TGG | + | chr2_1:16456879-16456898 | None:intergenic | 35.0% | |
| !! | GATAGTCTTGTCTTAATGTC+TGG | + | chr2_1:16456893-16456912 | None:intergenic | 35.0% |
| TCGATGTCACAATATTCGAT+TGG | - | chr2_1:16456959-16456978 | Msa0198000:intron | 35.0% | |
| TAAGATTTGAGCATGGAAAG+AGG | + | chr2_1:16456992-16457011 | None:intergenic | 35.0% | |
| TCTTTCCATGCTCAAATCTT+AGG | - | chr2_1:16456991-16457010 | Msa0198000:intron | 35.0% | |
| TCCAATATGGCAATGTATTC+AGG | + | chr2_1:16457204-16457223 | None:intergenic | 35.0% | |
| TGATATGTTGAAGTGATGAG+AGG | + | chr2_1:16457234-16457253 | None:intergenic | 35.0% | |
| !! | GATTTCTAAGGTACGTAAGT+TGG | + | chr2_1:16457311-16457330 | None:intergenic | 35.0% |
| AACAACTAGCATCATTAGAC+AGG | - | chr2_1:16457378-16457397 | Msa0198000:intron | 35.0% | |
| !!! | TCTTGTTACAGGAAGTGTTT+TGG | - | chr2_1:16457530-16457549 | Msa0198000:intron | 35.0% |
| ! | CAACAACTCTTTTATGAGTC+AGG | - | chr2_1:16457580-16457599 | Msa0198000:exon | 35.0% |
| ATGAGTCAGGTTATTCTGTA+CGG | - | chr2_1:16457593-16457612 | Msa0198000:five_prime_UTR | 35.0% | |
| AATGAAGGAGCAAGAAATGG+AGG | + | chr2_1:16454357-16454376 | None:intergenic | 40.0% | |
| GGTAATGAAGGAGCAAGAAA+TGG | + | chr2_1:16454360-16454379 | None:intergenic | 40.0% | |
| !! | GAGTTTGGTGATGGTAATGA+AGG | + | chr2_1:16454372-16454391 | None:intergenic | 40.0% |
| ! | AACGTTACTGAGTTTGGTGA+TGG | + | chr2_1:16454381-16454400 | None:intergenic | 40.0% |
| AATCCGTCCAAATTCACGTA+AGG | + | chr2_1:16454590-16454609 | None:intergenic | 40.0% | |
| !! | CGTGAATTTGGACGGATTAA+TGG | - | chr2_1:16454592-16454611 | Msa0198000:intron | 40.0% |
| ! | ATCAAGGAGCACAACTCTAA+TGG | + | chr2_1:16454659-16454678 | None:intergenic | 40.0% |
| ! | CTTGTTTCTCTTCAGCATCA+AGG | + | chr2_1:16454675-16454694 | None:intergenic | 40.0% |
| ! | TGAAGGTGTGAGGAACAAAA+TGG | - | chr2_1:16454783-16454802 | Msa0198000:CDS | 40.0% |
| GAATCTAAACTCAAACGTGG+TGG | - | chr2_1:16454945-16454964 | Msa0198000:CDS | 40.0% | |
| GTGTTGGAATCGGATATCAT+TGG | - | chr2_1:16455012-16455031 | Msa0198000:intron | 40.0% | |
| AAGCTTCGTGACCATTTAAC+CGG | - | chr2_1:16455312-16455331 | Msa0198000:CDS | 40.0% | |
| GAGGACATATTTGATGTGTG+GGG | - | chr2_1:16455398-16455417 | Msa0198000:CDS | 40.0% | |
| ! | GTTTGGTTCCAGAAGAATCT+TGG | - | chr2_1:16455505-16455524 | Msa0198000:CDS | 40.0% |
| ATGATACCATTGGAGTGAAC+AGG | - | chr2_1:16455556-16455575 | Msa0198000:CDS | 40.0% | |
| AATAGTCCTGTTCACTCCAA+TGG | + | chr2_1:16455565-16455584 | None:intergenic | 40.0% | |
| !! | AAGATAGCGGAAAAGTGCAA+AGG | - | chr2_1:16455600-16455619 | Msa0198000:CDS | 40.0% |
| CCCAACGATCTAATTGCTAA+TGG | + | chr2_1:16455630-16455649 | None:intergenic | 40.0% | |
| TTAGCAATTAGATCGTTGGG+AGG | - | chr2_1:16455630-16455649 | Msa0198000:CDS | 40.0% | |
| GAATTGATCGATGTCCTACA+AGG | - | chr2_1:16455681-16455700 | Msa0198000:CDS | 40.0% | |
| GGATAAAGATAGCATCATGC+CGG | - | chr2_1:16455725-16455744 | Msa0198000:CDS | 40.0% | |
| TTTGTTGAGGCGACAAGTTA+TGG | + | chr2_1:16455767-16455786 | None:intergenic | 40.0% | |
| GCGAAACATTGTCTTTGTTG+AGG | + | chr2_1:16455780-16455799 | None:intergenic | 40.0% | |
| TTCAATTGAAGGGAAGAGCA+TGG | - | chr2_1:16455884-16455903 | Msa0198000:CDS | 40.0% | |
| AGTAAGGCTAAAAGATGTCC+AGG | - | chr2_1:16456065-16456084 | Msa0198000:intron | 40.0% | |
| TCTTCTTTGAGCAAGCTATC+GGG | - | chr2_1:16456257-16456276 | Msa0198000:intron | 40.0% | |
| TTTACAATATCTCCCACCAC+TGG | - | chr2_1:16456598-16456617 | Msa0198000:intron | 40.0% | |
| GTTAGGTTACCTCGATGAAT+TGG | - | chr2_1:16456649-16456668 | Msa0198000:intron | 40.0% | |
| ATATGCACTCCAATTCATCG+AGG | + | chr2_1:16456661-16456680 | None:intergenic | 40.0% | |
| CGAATCATTCTTCCCATCTT+TGG | - | chr2_1:16456703-16456722 | Msa0198000:intron | 40.0% | |
| ! | GTAATATTCTGAGAGGATGG+AGG | - | chr2_1:16456747-16456766 | Msa0198000:intron | 40.0% |
| ATAGATAGACGAGGAAACTG+AGG | + | chr2_1:16456824-16456843 | None:intergenic | 40.0% | |
| AGAGTGCAATGTGCAGATAT+TGG | - | chr2_1:16456919-16456938 | Msa0198000:intron | 40.0% | |
| GGAAATTGGCGAAGTTAGTT+CGG | - | chr2_1:16457012-16457031 | Msa0198000:intron | 40.0% | |
| TGATTGTTTGGAGAGAAGGA+AGG | + | chr2_1:16457162-16457181 | None:intergenic | 40.0% | |
| AAGGTGATTGTTTGGAGAGA+AGG | + | chr2_1:16457166-16457185 | None:intergenic | 40.0% | |
| ! | CAGGCGAGAACAACTTTTAA+AGG | + | chr2_1:16457185-16457204 | None:intergenic | 40.0% |
| GCCTGAATACATTGCCATAT+TGG | - | chr2_1:16457200-16457219 | Msa0198000:intron | 40.0% | |
| GAGAGGTTGCATATCCAATA+TGG | + | chr2_1:16457217-16457236 | None:intergenic | 40.0% | |
| TGGGCATCCAATGATTTCTA+AGG | + | chr2_1:16457323-16457342 | None:intergenic | 40.0% | |
| AGTATTCTGCACCTAAGAGT+GGG | + | chr2_1:16457342-16457361 | None:intergenic | 40.0% | |
| ! | TTTTGGCATGAGGAAGACAA+TGG | - | chr2_1:16457547-16457566 | Msa0198000:CDS | 40.0% |
| TTTGGCATGAGGAAGACAAT+GGG | - | chr2_1:16457548-16457567 | Msa0198000:CDS | 40.0% | |
| TGAGTCAGGTTATTCTGTAC+GGG | - | chr2_1:16457594-16457613 | Msa0198000:five_prime_UTR | 40.0% | |
| ATGGCCGAGCAAATTCCATA+TGG | - | chr2_1:16454440-16454459 | Msa0198000:CDS | 45.0% | |
| AGGCTAGTAGCAACACCATA+TGG | + | chr2_1:16454458-16454477 | None:intergenic | 45.0% | |
| TCTGCTGCCTTACGTGAATT+TGG | - | chr2_1:16454580-16454599 | Msa0198000:intron | 45.0% | |
| CTGCCTTACGTGAATTTGGA+CGG | - | chr2_1:16454584-16454603 | Msa0198000:intron | 45.0% | |
| TCATCTAGCAAGTCATCTGC+AGG | + | chr2_1:16454754-16454773 | None:intergenic | 45.0% | |
| TCTAAACTCAAACGTGGTGG+TGG | - | chr2_1:16454948-16454967 | Msa0198000:CDS | 45.0% | |
| TATTTGATGTGTGGGGCTCA+AGG | - | chr2_1:16455405-16455424 | Msa0198000:CDS | 45.0% | |
| TGCAATTGTGGCACAAACCA+TGG | - | chr2_1:16455455-16455474 | Msa0198000:CDS | 45.0% | |
| GCAATTGTGGCACAAACCAT+GGG | - | chr2_1:16455456-16455475 | Msa0198000:CDS | 45.0% | |
| ATAAGGGACACTTACACCCA+TGG | + | chr2_1:16455475-16455494 | None:intergenic | 45.0% | |
| GCATCTTGGGATGATACCAT+TGG | - | chr2_1:16455546-16455565 | Msa0198000:CDS | 45.0% | |
| ATTCAAATGTGGATGGCGCA+TGG | - | chr2_1:16455849-16455868 | Msa0198000:CDS | 45.0% | |
| GATCTTGCAACACAAGTAGC+TGG | - | chr2_1:16456020-16456039 | Msa0198000:intron | 45.0% | |
| TGTGAGTGGAGATAGCCATT+TGG | + | chr2_1:16456543-16456562 | None:intergenic | 45.0% | |
| ! | ATATTCTGAGAGGATGGAGG+AGG | - | chr2_1:16456750-16456769 | Msa0198000:intron | 45.0% |
| ! | TATTGGAAATTGGTGGGTGC+TGG | - | chr2_1:16456843-16456862 | Msa0198000:intron | 45.0% |
| GTCTGGAAAAATAGGCATGG+AGG | + | chr2_1:16456876-16456895 | None:intergenic | 45.0% | |
| GATTTGAGCATGGAAAGAGG+AGG | + | chr2_1:16456989-16457008 | None:intergenic | 45.0% | |
| AATTTGGCACTGCTTCCTGA+AGG | - | chr2_1:16457271-16457290 | Msa0198000:intron | 45.0% | |
| GTAAGTCGAGAGATTCCTTC+AGG | + | chr2_1:16457289-16457308 | None:intergenic | 45.0% | |
| ATCATTGGATGCCCACTCTT+AGG | - | chr2_1:16457328-16457347 | Msa0198000:intron | 45.0% | |
| CAGTATTCTGCACCTAAGAG+TGG | + | chr2_1:16457343-16457362 | None:intergenic | 45.0% | |
| CACTCTTAGGTGCAGAATAC+TGG | - | chr2_1:16457341-16457360 | Msa0198000:intron | 45.0% | |
| !!! | ACAGGAAGTGTTTTGGCATG+AGG | - | chr2_1:16457537-16457556 | Msa0198000:intron | 45.0% |
| TTGGCATGAGGAAGACAATG+GGG | - | chr2_1:16457549-16457568 | Msa0198000:CDS | 45.0% | |
| TACGGGAACGAAACAAACGA+TGG | - | chr2_1:16457611-16457630 | Msa0198000:five_prime_UTR | 45.0% | |
| ACGGGAACGAAACAAACGAT+GGG | - | chr2_1:16457612-16457631 | Msa0198000:five_prime_UTR | 45.0% | |
| !! | TAGAAAAATATAAATAAATT+TGG | - | chr2_1:16457648-16457667 | Msa0198000:five_prime_UTR | 5.0% |
| GGCTCAAGGAAGTAAGGTTG+TGG | - | chr2_1:16455419-16455438 | Msa0198000:CDS | 50.0% | |
| GACGACTCGTAGTGCAATTG+TGG | - | chr2_1:16455443-16455462 | Msa0198000:CDS | 50.0% | |
| ! | GGGAAGAGCATGGAAGATGT+TGG | - | chr2_1:16455894-16455913 | Msa0198000:CDS | 50.0% |
| GATACATGCACAGGTCTTCC+TGG | + | chr2_1:16456086-16456105 | None:intergenic | 50.0% | |
| ATGGAAGACGTTCCAGTGGT+GGG | + | chr2_1:16456613-16456632 | None:intergenic | 50.0% | |
| AATGGAAGACGTTCCAGTGG+TGG | + | chr2_1:16456614-16456633 | None:intergenic | 50.0% | |
| AGGAATGGAAGACGTTCCAG+TGG | + | chr2_1:16456617-16456636 | None:intergenic | 50.0% | |
| GGAGAGAAGGAAGGCAATTG+AGG | + | chr2_1:16457153-16457172 | None:intergenic | 50.0% | |
| GTGTGGGGCTCAAGGAAGTA+AGG | - | chr2_1:16455413-16455432 | Msa0198000:CDS | 55.0% | |
| TCTGAGAGGATGGAGGAGGA+TGG | - | chr2_1:16456754-16456773 | Msa0198000:intron | 55.0% | |
| CTGAGAGGATGGAGGAGGAT+GGG | - | chr2_1:16456755-16456774 | Msa0198000:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 16454316 | 16457714 | 16454316 | ID=Msa0198000;Name=Msa0198000 |
| chr2_1 | mRNA | 16454316 | 16457714 | 16454316 | ID=Msa0198000-mRNA-1;Parent=Msa0198000;Name=Msa0198000-mRNA-1;_AED=0.17;_eAED=0.17;_QI=124|0.33|0.5|1|0.66|0.75|4|54|463 |
| chr2_1 | exon | 16454316 | 16454489 | 16454316 | ID=Msa0198000-mRNA-1:exon:6791;Parent=Msa0198000-mRNA-1 |
| chr2_1 | exon | 16454631 | 16455017 | 16454631 | ID=Msa0198000-mRNA-1:exon:6790;Parent=Msa0198000-mRNA-1 |
| chr2_1 | exon | 16455102 | 16455939 | 16455102 | ID=Msa0198000-mRNA-1:exon:6789;Parent=Msa0198000-mRNA-1 |
| chr2_1 | exon | 16457544 | 16457714 | 16457544 | ID=Msa0198000-mRNA-1:exon:6788;Parent=Msa0198000-mRNA-1 |
| chr2_1 | five_prime_UTR | 16457591 | 16457714 | 16457591 | ID=Msa0198000-mRNA-1:five_prime_utr;Parent=Msa0198000-mRNA-1 |
| chr2_1 | CDS | 16457544 | 16457590 | 16457544 | ID=Msa0198000-mRNA-1:cds;Parent=Msa0198000-mRNA-1 |
| chr2_1 | CDS | 16455102 | 16455939 | 16455102 | ID=Msa0198000-mRNA-1:cds;Parent=Msa0198000-mRNA-1 |
| chr2_1 | CDS | 16454631 | 16455017 | 16454631 | ID=Msa0198000-mRNA-1:cds;Parent=Msa0198000-mRNA-1 |
| chr2_1 | CDS | 16454370 | 16454489 | 16454370 | ID=Msa0198000-mRNA-1:cds;Parent=Msa0198000-mRNA-1 |
| chr2_1 | three_prime_UTR | 16454316 | 16454369 | 16454316 | ID=Msa0198000-mRNA-1:three_prime_utr;Parent=Msa0198000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
