AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0198570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0198570 MtrunA17_Chr2g0292611 88.270 341 38 1 1 341 17 355 0.0 627
Msa0198570 MtrunA17_Chr2g0292621 82.934 334 55 1 5 338 2 333 0.0 585
Msa0198570 MtrunA17_Chr1g0173761 74.775 333 83 1 6 338 3 334 0.0 531
Msa0198570 MtrunA17_Chr1g0173751 74.474 333 84 1 6 338 3 334 0.0 507
Msa0198570 MtrunA17_Chr2g0292581 66.567 335 109 2 5 338 2 334 3.83e-174 489
Msa0198570 MtrunA17_Chr4g0051711 60.997 341 120 4 6 338 3 338 2.14e-154 440
Msa0198570 MtrunA17_Chr4g0051681 59.942 342 124 3 6 338 3 340 1.71e-151 433
Msa0198570 MtrunA17_Chr4g0051821 59.581 334 124 3 13 338 8 338 7.76e-150 429
Msa0198570 MtrunA17_Chr4g0051761 58.960 346 129 4 1 338 20 360 1.13e-147 423
Msa0198570 MtrunA17_Chr4g0051731 63.487 304 107 2 35 338 16 315 9.25e-147 420
Msa0198570 MtrunA17_Chr6g0468811 60.117 341 123 5 6 338 3 338 1.17e-146 431
Msa0198570 MtrunA17_Chr4g0051701 58.824 340 128 3 7 338 4 339 2.93e-146 419
Msa0198570 MtrunA17_Chr6g0468791 60.248 322 116 5 25 338 19 336 7.85e-144 413
Msa0198570 MtrunA17_Chr2g0292631 82.486 177 31 0 5 181 2 178 2.66e-103 301
Msa0198570 MtrunA17_Chr8g0353201 38.109 349 184 9 5 338 2 333 1.02e-89 275
Msa0198570 MtrunA17_Chr1g0180281 39.205 352 184 9 2 338 3 339 1.41e-87 270
Msa0198570 MtrunA17_Chr1g0180271 39.714 350 181 9 2 336 3 337 2.27e-87 269
Msa0198570 MtrunA17_Chr6g0487311 37.326 359 187 9 5 338 2 347 4.78e-87 268
Msa0198570 MtrunA17_Chr6g0487401 37.500 352 168 10 2 338 31 345 3.11e-85 263
Msa0198570 MtrunA17_Chr4g0051791 56.422 218 72 4 117 326 7 209 3.64e-82 251
Msa0198570 MtrunA17_Chr6g0471901 37.024 289 157 7 12 285 7 285 4.71e-69 220
Msa0198570 MtrunA17_Chr1g0162771 38.496 226 116 6 5 214 2 220 1.35e-51 170
Msa0198570 MtrunA17_Chr2g0292641 94.048 84 5 0 255 338 1 84 5.19e-51 167
Msa0198570 MtrunA17_Chr4g0051801 61.458 96 34 2 6 101 3 95 5.99e-34 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0198570 AT5G61820.2 50.000 342 141 6 17 336 11 344 1.08e-116 346
Msa0198570 AT5G61820.1 50.000 342 141 6 17 336 11 344 1.08e-116 346

Find 60 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAACCACCTTTATAATT+TGG 0.135759 2_1:-17190946 Msa0198560:three_prime_UTR
AGAGGTTTGTGTCACGAAAT+TGG 0.266485 2_1:+17190329 Msa0198570:CDS
CCTGGACTTAGTTCAATCTT+AGG 0.290371 2_1:-17190460 Msa0198560:three_prime_UTR
GCAATTGGATCAACTCTATA+TGG 0.293672 2_1:+17197324 Msa0198570:CDS
CCATTCTCAACAGCTACTTT+TGG 0.302370 2_1:+17190397 Msa0198570:CDS
AGCTTACACTTACTATTATC+AGG 0.340801 2_1:-17190976 Msa0198560:three_prime_UTR
ATGTTCATGCTATTGATACT+AGG 0.355598 2_1:+17190839 Msa0198570:CDS
CACGAAATTGGAGCCTTTCA+TGG 0.355805 2_1:+17190341 Msa0198570:CDS
GCTGAACTAGTAGATGAATC+AGG 0.379874 2_1:+17190553 Msa0198570:CDS
CATCAACATTCAGGTGCAAT+TGG 0.391767 2_1:+17197309 Msa0198570:CDS
GCAAGCTTCCCAATGCAAAA+TGG 0.392679 2_1:+17197261 Msa0198570:CDS
ACACTGTAATGTGGATCAAT+TGG 0.393668 2_1:+17191043 Msa0198570:CDS
GGAGTTGGTCATCAACATTC+AGG 0.394933 2_1:+17197300 Msa0198570:CDS
AATTTATTTGAAACAGATCC+TGG 0.398948 2_1:-17190478 Msa0198560:three_prime_UTR
TTGGAAAGAGTATAAGTATA+TGG 0.400096 2_1:+17191062 Msa0198570:CDS
TTTGGCTTACCTTGCAATCA+TGG 0.403332 2_1:-17191161 Msa0198560:intron
AATGGCGGTTATGTCATCTA+TGG 0.409553 2_1:+17197279 Msa0198570:CDS
AGTGTTACAAAGGATGAAAA+TGG 0.419443 2_1:+17190910 Msa0198570:CDS
GCTTTGAGTCCAAATTATAA+AGG 0.431464 2_1:+17190937 Msa0198570:CDS
GTAAGTGTAAGCTGAGTAAA+GGG 0.435996 2_1:+17190986 Msa0198570:CDS
ACATATATTCCTCAACCATA+TGG 0.440752 2_1:+17190757 Msa0198570:CDS
AGTAAGTGTAAGCTGAGTAA+AGG 0.446870 2_1:+17190985 Msa0198570:CDS
AATGGTGTAGATAAGTTTGA+TGG 0.446934 2_1:-17190591 Msa0198560:three_prime_UTR
TCACCAACTTCTATTCCATA+TGG 0.458946 2_1:-17190772 Msa0198560:three_prime_UTR
TGTTCATGCTATTGATACTA+GGG 0.471362 2_1:+17190840 Msa0198570:CDS
AATGTTATTGAACAATACTA+TGG 0.477372 2_1:+17190706 Msa0198570:CDS
GATCCTGAAGAAATTCCAAA+AGG 0.480228 2_1:+17190793 Msa0198570:CDS
TAGGGGTGTGGAAGATAGAA+TGG 0.482982 2_1:+17190858 Msa0198570:CDS
CAACCATATGGAATAGAAGT+TGG 0.487899 2_1:+17190769 Msa0198570:CDS
ATTGAACAATACTATGGTAA+AGG 0.501549 2_1:+17190712 Msa0198570:CDS
ACGAAATTGGAGCCTTTCAT+GGG 0.506479 2_1:+17190342 Msa0198570:CDS
CCTAAGATTGAACTAAGTCC+AGG 0.509851 2_1:+17190460 Msa0198570:CDS
ATCAAACTTATCTACACCAT+TGG 0.510693 2_1:+17190593 Msa0198570:CDS
AGAAATTCCAAAAGGGTATG+AGG 0.511881 2_1:+17190801 Msa0198570:CDS
TGCTATTGATACTAGGGGTG+TGG 0.514061 2_1:+17190846 Msa0198570:CDS
TTCAAATAACTTGTGCTGCA+AGG 0.521800 2_1:-17197210 Msa0198560:intron
AGGGGTGTGGAAGATAGAAT+GGG 0.523203 2_1:+17190859 Msa0198570:CDS
ACTTCTATTCCATATGGTTG+AGG 0.523230 2_1:-17190766 Msa0198560:three_prime_UTR
ATTTAAAATACACTGTAATG+TGG 0.530778 2_1:+17191034 Msa0198570:CDS
CCAAAAGTAGCTGTTGAGAA+TGG 0.534361 2_1:-17190397 Msa0198560:three_prime_UTR
TTGAGTCCAAATTATAAAGG+TGG 0.544936 2_1:+17190940 Msa0198570:CDS
TTGAGTGCAATATGACCCCT+TGG 0.548858 2_1:-17190520 Msa0198560:three_prime_UTR
TCAAATATATAAATCTTGAC+CGG 0.550085 2_1:-17191087 Msa0198560:three_prime_UTR
GTGCTAGGATTGCCCATGAA+AGG 0.551474 2_1:-17190354 Msa0198560:three_prime_UTR
GGTTATGTCATCTATGGAGT+TGG 0.561035 2_1:+17197285 Msa0198570:CDS
ATCCTGAAGAAATTCCAAAA+GGG 0.565181 2_1:+17190794 Msa0198570:CDS
CTGAACTAGTAGATGAATCA+GGG 0.566618 2_1:+17190554 Msa0198570:CDS
AGAGTATAAGTATATGGTGC+CGG 0.569911 2_1:+17191068 Msa0198570:CDS
ACAAGTTATTTGAATCGTAG+TGG 0.578444 2_1:+17197219 Msa0198570:CDS
TGGATCAACTCTATATGGAA+AGG 0.583940 2_1:+17197329 Msa0198570:CDS
GAGACTAAACCATGATTGCA+AGG 0.590197 2_1:+17191152 Msa0198570:CDS
TGTAGATAAGTTTGATGGAG+AGG 0.591197 2_1:-17190586 Msa0198560:three_prime_UTR
CTAAACAGATGATCAACAAG+AGG 0.604843 2_1:+17190311 None:intergenic
TTGACAATAACACTAGTGCT+AGG 0.613703 2_1:-17190369 Msa0198560:three_prime_UTR
GGTAAAGGATCAGAAACAAG+AGG 0.629541 2_1:+17190727 Msa0198570:CDS
TGATTTGTATAGTGTTACAA+AGG 0.644090 2_1:+17190900 Msa0198570:CDS
AGCTTCCCAATGCAAAATGG+CGG 0.662013 2_1:+17197264 Msa0198570:CDS
GGTATCTTGTAACAGTCCAA+TGG 0.664612 2_1:-17190609 Msa0198560:three_prime_UTR
GTTCATGCTATTGATACTAG+GGG 0.673792 2_1:+17190841 Msa0198570:CDS
GGGGTGTGGAAGATAGAATG+GGG 0.677538 2_1:+17190860 Msa0198570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATTTTAATTAAATAT+TGG + chr2_1:17192432-17192451 Msa0198570:intron 0.0%
!!! ATTATTTTTAAAAGAAATCA+TGG + chr2_1:17190670-17190689 Msa0198570:CDS 10.0%
!! ATATAAATTATACTTTGATT+TGG - chr2_1:17191182-17191201 Msa0198560:intron 10.0%
!! TTTGAATATCTTAAAAATTA+TGG - chr2_1:17192047-17192066 Msa0198560:intron 10.0%
!!! TTAGAAAATATTTTTTCATA+AGG + chr2_1:17195431-17195450 Msa0198570:intron 10.0%
!!! CTTTTTTTATTATAACTAAT+TGG - chr2_1:17195997-17196016 Msa0198560:intron 10.0%
!!! TTTTTTTTTTCAAAGATATT+TGG + chr2_1:17196183-17196202 Msa0198570:intron 10.0%
!!! ATTATTTTTAAAAGAAACAA+TGG + chr2_1:17196616-17196635 Msa0198570:intron 10.0%
!!! AACTAAGTATATATTTTCAT+GGG - chr2_1:17191439-17191458 Msa0198560:intron 15.0%
!!! TGTTATTTGAAAGATTAAAA+TGG + chr2_1:17191894-17191913 Msa0198570:intron 15.0%
!! AATAATTTCTCAAAATGAAA+AGG + chr2_1:17192265-17192284 Msa0198570:intron 15.0%
!! TACCTATAAAATTAAAAGTT+TGG + chr2_1:17193459-17193478 Msa0198570:intron 15.0%
!!! AAAAGAATATCATCTATTTT+TGG + chr2_1:17194362-17194381 Msa0198570:intron 15.0%
!! AATTGAAATGTATAATACTT+AGG + chr2_1:17195331-17195350 Msa0198570:intron 15.0%
!! TTATTTCATAAACCTAAAAA+TGG - chr2_1:17195385-17195404 Msa0198560:intron 15.0%
!!! CTTTTAAATTATTAGCTAAA+TGG - chr2_1:17195646-17195665 Msa0198560:intron 15.0%
!!! AATTTTTCTCTTTAAATCTA+AGG + chr2_1:17195886-17195905 Msa0198570:intron 15.0%
!!! ATTTTTCTCTTTAAATCTAA+GGG + chr2_1:17195887-17195906 Msa0198570:intron 15.0%
!!! AAAATCAAATTTCATTTTGA+AGG - chr2_1:17195957-17195976 Msa0198560:intron 15.0%
!! CATTATAGTAAATATTTGAA+GGG - chr2_1:17196094-17196113 Msa0198560:intron 15.0%
!!! CTTTGTTTGAATATTTTTTT+TGG - chr2_1:17196375-17196394 Msa0198560:intron 15.0%
!! AATGTTATTGAACAATACTA+TGG + chr2_1:17190706-17190725 Msa0198570:CDS 20.0%
!!! ATTTAAAATACACTGTAATG+TGG + chr2_1:17191034-17191053 Msa0198570:CDS 20.0%
!! TCAAATATATAAATCTTGAC+CGG - chr2_1:17191090-17191109 Msa0198560:three_prime_UTR 20.0%
!!! GAACTAAGTATATATTTTCA+TGG - chr2_1:17191440-17191459 Msa0198560:intron 20.0%
!! TGTTATATTGAGATTCAAAT+AGG - chr2_1:17191576-17191595 Msa0198560:intron 20.0%
!!! CACAACTTTTAAATTGTTAA+CGG + chr2_1:17191929-17191948 Msa0198570:intron 20.0%
!! TAATTACGTTAAGATGATTA+AGG + chr2_1:17191968-17191987 Msa0198570:intron 20.0%
!! AATTACGTTAAGATGATTAA+GGG + chr2_1:17191969-17191988 Msa0198570:intron 20.0%
!! TAGTTAACACATGTAAATTA+TGG + chr2_1:17192075-17192094 Msa0198570:intron 20.0%
!! CATAGATAGTCTAATTATAA+AGG - chr2_1:17192363-17192382 Msa0198560:intron 20.0%
!!! TTTTGTTATTATGCTGTATT+CGG + chr2_1:17192832-17192851 Msa0198570:intron 20.0%
!! AGTAAAGAGAATAAATCAAA+AGG - chr2_1:17192953-17192972 Msa0198560:intron 20.0%
!!! TTTGATTTATTCTCTTTACT+TGG + chr2_1:17192953-17192972 Msa0198570:intron 20.0%
!!! CACCAAACTTTTAATTTTAT+AGG - chr2_1:17193464-17193483 Msa0198560:intron 20.0%
!!! ATTTCTTTTCGTGATTAAAT+CGG - chr2_1:17193912-17193931 Msa0198560:intron 20.0%
!! ATTTAATCACGAAAAGAAAT+TGG + chr2_1:17193912-17193931 Msa0198570:intron 20.0%
!! TTTAATCACGAAAAGAAATT+GGG + chr2_1:17193913-17193932 Msa0198570:intron 20.0%
!!! ACAAGCTTTTATGAAAATAT+AGG + chr2_1:17193945-17193964 Msa0198570:intron 20.0%
!!! CTTTTTTATCACAAATGTTT+TGG - chr2_1:17194134-17194153 Msa0198560:three_prime_UTR 20.0%
!!! AGGATGTAATTTTTTAATTG+TGG - chr2_1:17194203-17194222 Msa0198560:intron 20.0%
!! TAAAGAATTGTATAAGCATA+AGG - chr2_1:17194223-17194242 Msa0198560:intron 20.0%
!! TTTGTATGATCTTATAGAAA+AGG - chr2_1:17194333-17194352 Msa0198560:intron 20.0%
!! AGATTAAAGTGTGAATTAAA+TGG - chr2_1:17194444-17194463 Msa0198560:intron 20.0%
!! AATATTTATTCACCAAAAGA+TGG - chr2_1:17194909-17194928 Msa0198560:intron 20.0%
!! ATTTAGCAACTATTAAAAGA+TGG - chr2_1:17194956-17194975 Msa0198560:intron 20.0%
!!! ATAAATCAATGACCATTTTT+AGG + chr2_1:17195370-17195389 Msa0198570:intron 20.0%
!! TTAGCTAATAATTTAAAAGC+TGG + chr2_1:17195647-17195666 Msa0198570:intron 20.0%
!!! CTTTTCTGTACAAATTTTTA+AGG - chr2_1:17195704-17195723 Msa0198560:intron 20.0%
!! CCATTATAGTAAATATTTGA+AGG - chr2_1:17196095-17196114 Msa0198560:intron 20.0%
!! CCTTCAAATATTTACTATAA+TGG + chr2_1:17196092-17196111 Msa0198570:intron 20.0%
!!! TTCAAATAAAGACTTTGTTT+TGG - chr2_1:17196967-17196986 Msa0198560:intron 20.0%
!! TCAAATATATAAATCTTGAG+AGG - chr2_1:17197030-17197049 Msa0198560:intron 20.0%
! GAGAAAAAAAAACTTGTGTT+TGG - chr2_1:17190441-17190460 Msa0198560:three_prime_UTR 25.0%
!! AATTTATTTGAAACAGATCC+TGG - chr2_1:17190481-17190500 Msa0198560:three_prime_UTR 25.0%
!!! ATTATGATGTTGATTTTCCA+AGG + chr2_1:17190503-17190522 Msa0198570:CDS 25.0%
!!! TTATGATGTTGATTTTCCAA+GGG + chr2_1:17190504-17190523 Msa0198570:CDS 25.0%
!! CTATTGTTTGTCACATTTTT+AGG - chr2_1:17190640-17190659 Msa0198560:three_prime_UTR 25.0%
! ATTGAACAATACTATGGTAA+AGG + chr2_1:17190712-17190731 Msa0198570:CDS 25.0%
!! TGATTTGTATAGTGTTACAA+AGG + chr2_1:17190900-17190919 Msa0198570:CDS 25.0%
!! TTGGAAAGAGTATAAGTATA+TGG + chr2_1:17191062-17191081 Msa0198570:CDS 25.0%
! TCCTACATAAGGATAAATTA+CGG - chr2_1:17191242-17191261 Msa0198560:intron 25.0%
! TTTGTTGAAATCACATCAAT+TGG + chr2_1:17191316-17191335 Msa0198570:intron 25.0%
!!! ACACAACTTTTTTACTTTGA+AGG - chr2_1:17191877-17191896 Msa0198560:intron 25.0%
! CGTTAACAATTTAAAAGTTG+TGG - chr2_1:17191931-17191950 Msa0198560:intron 25.0%
! ATTGTTAACGGAGTATAAAT+AGG + chr2_1:17191941-17191960 Msa0198570:intron 25.0%
!! TATAAAGGTTGATCACATTA+AGG - chr2_1:17192348-17192367 Msa0198560:intron 25.0%
!!! GGATCAAAGTTTTGAAATTT+TGG + chr2_1:17192453-17192472 Msa0198570:intron 25.0%
! TGTACTTCAATTCCAAAATA+TGG + chr2_1:17192509-17192528 Msa0198570:intron 25.0%
! TCAATTCCAAAATATGGAAA+AGG + chr2_1:17192515-17192534 Msa0198570:intron 25.0%
! AATGAAAAAGGATATGTTGT+AGG + chr2_1:17192551-17192570 Msa0198570:intron 25.0%
! AATGATAGGAATGTTAAACA+TGG - chr2_1:17192724-17192743 Msa0198560:three_prime_UTR 25.0%
! ATGTATGGTGAATTATACAA+TGG + chr2_1:17192746-17192765 Msa0198570:intron 25.0%
! TGTATGGTGAATTATACAAT+GGG + chr2_1:17192747-17192766 Msa0198570:intron 25.0%
! ACATTACATGCATAGATAAA+TGG - chr2_1:17192905-17192924 Msa0198560:intron 25.0%
!!! GCGATAATGGAAAATTTTAT+GGG + chr2_1:17193103-17193122 Msa0198570:intron 25.0%
!! TTTCTTTTCGTGATTAAATC+GGG - chr2_1:17193911-17193930 Msa0198560:intron 25.0%
!!! TATATCACTTTTCAACTGTA+AGG + chr2_1:17194260-17194279 Msa0198570:intron 25.0%
!!! AGATGATATTCTTTTTTGCA+AGG - chr2_1:17194357-17194376 Msa0198560:intron 25.0%
!!! ATCTATTTTTGGCTTTCAAA+TGG + chr2_1:17194373-17194392 Msa0198570:intron 25.0%
! AAAGTTTGAAAACATGTTAC+TGG - chr2_1:17194681-17194700 Msa0198560:intron 25.0%
! CTTAACAATTGTAAATTTGC+TGG + chr2_1:17194706-17194725 Msa0198570:intron 25.0%
!! GTTTTTGTTCCTCTTATTAT+AGG - chr2_1:17194751-17194770 Msa0198560:intron 25.0%
! AAAAGAAATGCAATTTGATG+TGG + chr2_1:17195210-17195229 Msa0198570:intron 25.0%
! TATGCATATCAAGAAAATGA+TGG - chr2_1:17195283-17195302 Msa0198560:intron 25.0%
!!! TTTTAATTCGTTGACTCTTT+TGG + chr2_1:17195563-17195582 Msa0198570:intron 25.0%
! TAATTTAAAAGCTGGTGTAT+CGG + chr2_1:17195655-17195674 Msa0198570:intron 25.0%
! AAGTAGTGCAAGTTATTTAT+AGG + chr2_1:17195756-17195775 Msa0198570:intron 25.0%
! AGTAGTGCAAGTTATTTATA+GGG + chr2_1:17195757-17195776 Msa0198570:intron 25.0%
!!! AATTTCATTTTGAAGGATGA+TGG - chr2_1:17195950-17195969 Msa0198560:intron 25.0%
! TAGCAAGTGAATATCAAATT+TGG + chr2_1:17196145-17196164 Msa0198570:intron 25.0%
!!! TTTTTCAAAGATATTTGGCA+AGG + chr2_1:17196188-17196207 Msa0198570:intron 25.0%
! AAAGCAATTGCATATAAAGA+AGG - chr2_1:17196225-17196244 Msa0198560:intron 25.0%
!! CTATTGTTTGTCACATTTTT+AGG - chr2_1:17190640-17190659 Msa0198560:three_prime_UTR 25.0%
! ATATTCATGCTATTGATACT+AGG + chr2_1:17196785-17196804 Msa0198570:intron 25.0%
! TATTCATGCTATTGATACTA+GGG + chr2_1:17196786-17196805 Msa0198570:intron 25.0%
!! TGATTTGTATAGTGTTACAA+AGG + chr2_1:17190900-17190919 Msa0198570:CDS 25.0%
!! ATTTGAAATACACTGTTAAG+TGG + chr2_1:17196980-17196999 Msa0198570:intron 25.0%
!! TTTGAAATACACTGTTAAGT+GGG + chr2_1:17196981-17197000 Msa0198570:intron 25.0%
!!! TATGATGTTGATTTTCCAAG+GGG + chr2_1:17190505-17190524 Msa0198570:CDS 30.0%
AATGGTGTAGATAAGTTTGA+TGG - chr2_1:17190594-17190613 Msa0198560:three_prime_UTR 30.0%
ATCAAACTTATCTACACCAT+TGG + chr2_1:17190593-17190612 Msa0198570:CDS 30.0%
!!! TGTTTGTCACATTTTTAGGT+TGG - chr2_1:17190636-17190655 Msa0198560:three_prime_UTR 30.0%
! AGAAATCATGGATTTTGTCA+AGG + chr2_1:17190682-17190701 Msa0198570:CDS 30.0%
ACATATATTCCTCAACCATA+TGG + chr2_1:17190757-17190776 Msa0198570:CDS 30.0%
ATCCTGAAGAAATTCCAAAA+GGG + chr2_1:17190794-17190813 Msa0198570:CDS 30.0%
ATGTTCATGCTATTGATACT+AGG + chr2_1:17190839-17190858 Msa0198570:CDS 30.0%
TGTTCATGCTATTGATACTA+GGG + chr2_1:17190840-17190859 Msa0198570:CDS 30.0%
AGTGTTACAAAGGATGAAAA+TGG + chr2_1:17190910-17190929 Msa0198570:CDS 30.0%
! GCTTTGAGTCCAAATTATAA+AGG + chr2_1:17190937-17190956 Msa0198570:CDS 30.0%
TTGAGTCCAAATTATAAAGG+TGG + chr2_1:17190940-17190959 Msa0198570:CDS 30.0%
TGCAAACCACCTTTATAATT+TGG - chr2_1:17190949-17190968 Msa0198560:three_prime_UTR 30.0%
AGCTTACACTTACTATTATC+AGG - chr2_1:17190979-17190998 Msa0198560:three_prime_UTR 30.0%
! ATGGTTTAGTCTCTTTTCTT+TGG - chr2_1:17191145-17191164 Msa0198560:three_prime_UTR 30.0%
! TCATTTTCCTACAACATGAT+AGG + chr2_1:17191209-17191228 Msa0198570:intron 30.0%
TCCGTAATTTATCCTTATGT+AGG + chr2_1:17191238-17191257 Msa0198570:intron 30.0%
ATCATGTTATGTCCTACATA+AGG - chr2_1:17191253-17191272 Msa0198560:intron 30.0%
TTCGATATAAGTCCAAAGTA+AGG + chr2_1:17191410-17191429 Msa0198570:intron 30.0%
AATGGTGGTTATGTCATATA+TGG + chr2_1:17191744-17191763 Msa0198570:intron 30.0%
AGATGATTAAGGGAAATATC+TGG + chr2_1:17191979-17191998 Msa0198570:intron 30.0%
TGCCCAATATATAATTGGAT+GGG - chr2_1:17192312-17192331 Msa0198560:intron 30.0%
ATGCCCAATATATAATTGGA+TGG - chr2_1:17192313-17192332 Msa0198560:intron 30.0%
CAAGATGCCCAATATATAAT+TGG - chr2_1:17192317-17192336 Msa0198560:intron 30.0%
TTCCAAAATATGGAAAAGGA+AGG + chr2_1:17192519-17192538 Msa0198570:intron 30.0%
TCAAATATCTTGATAGAACC+TGG - chr2_1:17192599-17192618 Msa0198560:three_prime_UTR 30.0%
GGTTCTATCAAGATATTTGA+TGG + chr2_1:17192599-17192618 Msa0198570:intron 30.0%
!! AATGGGACTTTTCTATTTCT+TGG + chr2_1:17192676-17192695 Msa0198570:intron 30.0%
! GAATGTTAAACATGGTAATG+TGG - chr2_1:17192716-17192735 Msa0198560:three_prime_UTR 30.0%
CATTCCTATCATTCTATGTA+TGG + chr2_1:17192731-17192750 Msa0198570:intron 30.0%
TTCACCATACATAGAATGAT+AGG - chr2_1:17192738-17192757 Msa0198560:three_prime_UTR 30.0%
TAACTAACCAACTTCACAAT+TGG - chr2_1:17192866-17192885 Msa0198560:three_prime_UTR 30.0%
! GGTACTGAAATGATAATGAT+AGG - chr2_1:17192932-17192951 Msa0198560:intron 30.0%
ACTTACACTAGTTGTATAGA+AGG + chr2_1:17193026-17193045 Msa0198570:intron 30.0%
CTTACACTAGTTGTATAGAA+GGG + chr2_1:17193027-17193046 Msa0198570:intron 30.0%
AAAAGACACATTTACGTGTT+GGG - chr2_1:17193070-17193089 Msa0198560:intron 30.0%
!!! CGCGATAATGGAAAATTTTA+TGG + chr2_1:17193102-17193121 Msa0198570:intron 30.0%
! GATTTATGAAGTAAGAGTAC+CGG - chr2_1:17193157-17193176 Msa0198560:intron 30.0%
AATCAAAGTTCTCTAGTATG+AGG + chr2_1:17193318-17193337 Msa0198570:intron 30.0%
ATCAAAGTTCTCTAGTATGA+GGG + chr2_1:17193319-17193338 Msa0198570:intron 30.0%
CCTAACATATTTGAGTGTAT+CGG - chr2_1:17193489-17193508 Msa0198560:intron 30.0%
ACTCAAATATGTTAGGTGTA+CGG + chr2_1:17193493-17193512 Msa0198570:intron 30.0%
CATTGCACGTGTATAAAATT+TGG - chr2_1:17193528-17193547 Msa0198560:intron 30.0%
TGAAAATATAGGAGAAACAG+AGG + chr2_1:17193956-17193975 Msa0198570:intron 30.0%
ATCTAAACAGATTAGTGACA+TGG - chr2_1:17194097-17194116 Msa0198560:intron 30.0%
ATGGACATCAATATTTAACG+TGG + chr2_1:17194581-17194600 Msa0198570:intron 30.0%
ATGCTTCTAAATGAAACACT+TGG - chr2_1:17194818-17194837 Msa0198560:intron 30.0%
TGAATCTTACTGTCCATATT+TGG + chr2_1:17194838-17194857 Msa0198570:intron 30.0%
ATCTATGCGTTTACCAAATA+TGG - chr2_1:17194854-17194873 Msa0198560:intron 30.0%
TATTTGGTAAACGCATAGAT+TGG + chr2_1:17194854-17194873 Msa0198570:intron 30.0%
! AATTTCTTCCCAAGTTTTTG+AGG + chr2_1:17195003-17195022 Msa0198570:intron 30.0%
! ATGATGATGATTAAGAGTGA+AGG - chr2_1:17195035-17195054 Msa0198560:intron 30.0%
TAAGCAAAACTCAGAAAAGA+TGG - chr2_1:17195088-17195107 Msa0198560:intron 30.0%
!! AACTTGCACTACTTTAAAGT+CGG - chr2_1:17195750-17195769 Msa0198560:intron 30.0%
AGTGAATATCAAATTTGGCA+TGG + chr2_1:17196150-17196169 Msa0198570:intron 30.0%
TATTTGGCAAGGTTAACTTA+AGG + chr2_1:17196199-17196218 Msa0198570:intron 30.0%
TGTATAAACAGATCAACATG+AGG + chr2_1:17196258-17196277 Msa0198570:intron 30.0%
! TGTCGCAAATAAAGTATTCA+TGG + chr2_1:17196432-17196451 Msa0198570:intron 30.0%
AATGATGTAGGTAAGTTTGA+TGG - chr2_1:17196540-17196559 Msa0198560:intron 30.0%
ATCAAACTTACCTACATCAT+TGG + chr2_1:17196539-17196558 Msa0198570:intron 30.0%
TTACAACAATCCAATGATGT+AGG - chr2_1:17196552-17196571 Msa0198560:intron 30.0%
!!! TGTTTGTCACATTTTTAGGT+TGG - chr2_1:17190636-17190655 Msa0198560:three_prime_UTR 30.0%
AATCCTGAAGAAATTCCAAA+AGG + chr2_1:17196739-17196758 Msa0198570:intron 30.0%
ATCCTGAAGAAATTCCAAAA+GGG + chr2_1:17190794-17190813 Msa0198570:CDS 30.0%
ATTCATGCTATTGATACTAG+GGG + chr2_1:17196787-17196806 Msa0198570:intron 30.0%
AGTGTTACAAAGGATGAAAA+TGG + chr2_1:17190910-17190929 Msa0198570:CDS 30.0%
! GCTTTGAGTCCAAATTATAA+AGG + chr2_1:17190937-17190956 Msa0198570:CDS 30.0%
TTGAGTCCAAATTATAAAGG+TGG + chr2_1:17190940-17190959 Msa0198570:CDS 30.0%
TGCAAACCACCTTTATAATT+TGG - chr2_1:17190949-17190968 Msa0198560:three_prime_UTR 30.0%
AGCTTACACTTACTATTATC+AGG - chr2_1:17190979-17190998 Msa0198560:three_prime_UTR 30.0%
GGTTAATTGGGAAAAGTTTA+TGG + chr2_1:17197002-17197021 Msa0198570:intron 30.0%
AAGATTTCAGATAAGTCCAA+AGG + chr2_1:17191126-17191145 Msa0198570:CDS 30.0%
ACAAGTTATTTGAATCGTAG+TGG + chr2_1:17197219-17197238 Msa0198570:CDS 30.0%
TTGACAATAACACTAGTGCT+AGG - chr2_1:17190372-17190391 Msa0198560:three_prime_UTR 35.0%
!!! CATTCTCAACAGCTACTTTT+GGG + chr2_1:17190398-17190417 Msa0198570:CDS 35.0%
CTGAACTAGTAGATGAATCA+GGG + chr2_1:17190554-17190573 Msa0198570:CDS 35.0%
TGTAGATAAGTTTGATGGAG+AGG - chr2_1:17190589-17190608 Msa0198560:three_prime_UTR 35.0%
!!! TTGTCACATTTTTAGGTTGG+TGG - chr2_1:17190633-17190652 Msa0198560:three_prime_UTR 35.0%
ACTTCTATTCCATATGGTTG+AGG - chr2_1:17190769-17190788 Msa0198560:three_prime_UTR 35.0%
CAACCATATGGAATAGAAGT+TGG + chr2_1:17190769-17190788 Msa0198570:CDS 35.0%
TCACCAACTTCTATTCCATA+TGG - chr2_1:17190775-17190794 Msa0198560:three_prime_UTR 35.0%
GATCCTGAAGAAATTCCAAA+AGG + chr2_1:17190793-17190812 Msa0198570:CDS 35.0%
!!! TACCCTTTTGGAATTTCTTC+AGG - chr2_1:17190799-17190818 Msa0198560:three_prime_UTR 35.0%
! AGAAATTCCAAAAGGGTATG+AGG + chr2_1:17190801-17190820 Msa0198570:CDS 35.0%
! CATTTTTCCTCATACCCTTT+TGG - chr2_1:17190811-17190830 Msa0198560:three_prime_UTR 35.0%
! CAAAAGGGTATGAGGAAAAA+TGG + chr2_1:17190809-17190828 Msa0198570:CDS 35.0%
GTTCATGCTATTGATACTAG+GGG + chr2_1:17190841-17190860 Msa0198570:CDS 35.0%
AGTAAGTGTAAGCTGAGTAA+AGG + chr2_1:17190985-17191004 Msa0198570:CDS 35.0%
GTAAGTGTAAGCTGAGTAAA+GGG + chr2_1:17190986-17191005 Msa0198570:CDS 35.0%
! AAGCTGAGTAAAGGGTTTTT+AGG + chr2_1:17190994-17191013 Msa0198570:CDS 35.0%
ACACTGTAATGTGGATCAAT+TGG + chr2_1:17191043-17191062 Msa0198570:CDS 35.0%
AGAGTATAAGTATATGGTGC+CGG + chr2_1:17191068-17191087 Msa0198570:CDS 35.0%
ATGTGTACCTATCATGTTGT+AGG - chr2_1:17191219-17191238 Msa0198560:intron 35.0%
ATCAATTGGTATCAGAGTCT+CGG + chr2_1:17191330-17191349 Msa0198570:intron 35.0%
TTTCATGGGAATCCTTACTT+TGG - chr2_1:17191425-17191444 Msa0198560:intron 35.0%
! CATAACCACCATTTTGCATT+GGG - chr2_1:17191737-17191756 Msa0198560:three_prime_UTR 35.0%
! ACATAACCACCATTTTGCAT+TGG - chr2_1:17191738-17191757 Msa0198560:three_prime_UTR 35.0%
GGTTATGTCATATATGGAGT+TGG + chr2_1:17191750-17191769 Msa0198570:intron 35.0%
GCAATTGGATCAACTCTATA+TGG + chr2_1:17191789-17191808 Msa0198570:intron 35.0%
TGGATCAACTCTATATGGAA+AGG + chr2_1:17191794-17191813 Msa0198570:intron 35.0%
CTTTCGCGACAACTATTTAA+GGG - chr2_1:17192222-17192241 Msa0198560:intron 35.0%
ACTTTCGCGACAACTATTTA+AGG - chr2_1:17192223-17192242 Msa0198560:intron 35.0%
TCCCCCATCCAATTATATAT+TGG + chr2_1:17192306-17192325 Msa0198570:intron 35.0%
CCCAATATATAATTGGATGG+GGG - chr2_1:17192310-17192329 Msa0198560:intron 35.0%
CCCCCATCCAATTATATATT+GGG + chr2_1:17192307-17192326 Msa0198570:intron 35.0%
GCCCAATATATAATTGGATG+GGG - chr2_1:17192311-17192330 Msa0198560:intron 35.0%
TGTGACATTAATGTCAGGAT+GGG + chr2_1:17192477-17192496 Msa0198570:intron 35.0%
! CTCCTTCCTTTTCCATATTT+TGG - chr2_1:17192524-17192543 Msa0198560:three_prime_UTR 35.0%
TCTTGATAGAACCTGGTTTA+GGG - chr2_1:17192592-17192611 Msa0198560:three_prime_UTR 35.0%
ATCTTGATAGAACCTGGTTT+AGG - chr2_1:17192593-17192612 Msa0198560:three_prime_UTR 35.0%
!! ATAAGACACTCTGGAGTAAT+GGG + chr2_1:17192659-17192678 Msa0198570:intron 35.0%
TAAGCTACCAATTGTGAAGT+TGG + chr2_1:17192856-17192875 Msa0198570:intron 35.0%
GAAAAGACACATTTACGTGT+TGG - chr2_1:17193071-17193090 Msa0198560:intron 35.0%
CCGATACACTCAAATATGTT+AGG + chr2_1:17193486-17193505 Msa0198570:intron 35.0%
GTGATTAAATCGGGATAAAG+TGG - chr2_1:17193902-17193921 Msa0198560:intron 35.0%
!!! TTTTTGGCTTTCAAATGGAG+TGG + chr2_1:17194378-17194397 Msa0198570:intron 35.0%
! CTGCAAATTTCGGTTTCTTT+TGG - chr2_1:17194543-17194562 Msa0198560:intron 35.0%
GCACAACGCTAGTAATAAAA+TGG + chr2_1:17194562-17194581 Msa0198570:intron 35.0%
AACGTGGAGAAATAAATCGA+TGG + chr2_1:17194597-17194616 Msa0198570:intron 35.0%
ACACTTTAGGTGTATGACTT+TGG - chr2_1:17194652-17194671 Msa0198560:intron 35.0%
!! TTACTGGTTTCACACACTTT+AGG - chr2_1:17194665-17194684 Msa0198560:intron 35.0%
CTAATCTATCACTGTCTAGT+TGG - chr2_1:17195861-17195880 Msa0198560:intron 35.0%
CAACTAGACAGTGATAGATT+AGG + chr2_1:17195859-17195878 Msa0198570:intron 35.0%
!!! ATTTTGAAGGATGATGGACT+TGG - chr2_1:17195944-17195963 Msa0198560:intron 35.0%
TGAGGTTTGTATCACAAACT+AGG + chr2_1:17196276-17196295 Msa0198570:intron 35.0%
ACAAACTAGGAAGCTTTCAT+GGG + chr2_1:17196289-17196308 Msa0198570:intron 35.0%
!!! ATGGATGTTGATTTTCCAAG+AGG + chr2_1:17196451-17196470 Msa0198570:intron 35.0%
TTGAGTGAAATATGACCTCT+TGG - chr2_1:17196469-17196488 Msa0198560:intron 35.0%
!! CTGAAGTAGTTGATGAATCA+GGG + chr2_1:17196500-17196519 Msa0198570:intron 35.0%
!!! TTGTCACATTTTTAGGTTGG+TGG - chr2_1:17190633-17190652 Msa0198560:three_prime_UTR 35.0%
GTGACAAACAATAGTCAAGA+AGG + chr2_1:17196592-17196611 Msa0198570:intron 35.0%
! TTTTGTCAAGAGAATGTCCT+TGG + chr2_1:17196640-17196659 Msa0198570:intron 35.0%
ACATATATTCCTGACCCTTA+TGG + chr2_1:17196703-17196722 Msa0198570:intron 35.0%
TACCAACTTCTATGCCATAA+GGG - chr2_1:17196720-17196739 Msa0198560:intron 35.0%
TTACCAACTTCTATGCCATA+AGG - chr2_1:17196721-17196740 Msa0198560:intron 35.0%
!!! TACCCTTTTGGAATTTCTTC+AGG - chr2_1:17190799-17190818 Msa0198560:three_prime_UTR 35.0%
! AGAAATTCCAAAAGGGTATG+TGG + chr2_1:17190801-17190820 Msa0198570:CDS 35.0%
! CATTTTTCCACATACCCTTT+TGG - chr2_1:17196757-17196776 Msa0198560:intron 35.0%
! CAAAAGGGTATGTGGAAAAA+TGG + chr2_1:17196755-17196774 Msa0198570:intron 35.0%
AGTAAGTGTAAGCTGAGTAA+AGG + chr2_1:17190985-17191004 Msa0198570:CDS 35.0%
GTAAGTGTAAGCTGAGTAAA+GGG + chr2_1:17190986-17191005 Msa0198570:CDS 35.0%
! AAGCTGAGTAAAGGGTTTTT+AGG + chr2_1:17190994-17191013 Msa0198570:CDS 35.0%
!! ACACTGTTAAGTGGGTTAAT+TGG + chr2_1:17196989-17197008 Msa0198570:intron 35.0%
!! CACTGTTAAGTGGGTTAATT+GGG + chr2_1:17196990-17197009 Msa0198570:intron 35.0%
ATGGTTTAGTCTCTTTCCTT+TGG - chr2_1:17197085-17197104 Msa0198560:intron 35.0%
! TTTAGCTTACCTTGCAATCA+TGG - chr2_1:17197104-17197123 Msa0198560:intron 35.0%
! TTCAAATAACTTGTGCTGCA+AGG - chr2_1:17197213-17197232 Msa0198560:intron 35.0%
GCAATTGGATCAACTCTATA+TGG + chr2_1:17191789-17191808 Msa0198570:intron 35.0%
TGGATCAACTCTATATGGAA+AGG + chr2_1:17191794-17191813 Msa0198570:intron 35.0%
AGAGGTTTGTGTCACGAAAT+TGG + chr2_1:17190329-17190348 Msa0198570:CDS 40.0%
ACGAAATTGGAGCCTTTCAT+GGG + chr2_1:17190342-17190361 Msa0198570:CDS 40.0%
CCAAAAGTAGCTGTTGAGAA+TGG - chr2_1:17190400-17190419 Msa0198560:three_prime_UTR 40.0%
!! CCATTCTCAACAGCTACTTT+TGG + chr2_1:17190397-17190416 Msa0198570:CDS 40.0%
CCTGGACTTAGTTCAATCTT+AGG - chr2_1:17190463-17190482 Msa0198560:three_prime_UTR 40.0%
CCTAAGATTGAACTAAGTCC+AGG + chr2_1:17190460-17190479 Msa0198570:CDS 40.0%
GCTGAACTAGTAGATGAATC+AGG + chr2_1:17190553-17190572 Msa0198570:CDS 40.0%
GGTATCTTGTAACAGTCCAA+TGG - chr2_1:17190612-17190631 Msa0198560:three_prime_UTR 40.0%
GGTAAAGGATCAGAAACAAG+AGG + chr2_1:17190727-17190746 Msa0198570:CDS 40.0%
GAGACTAAACCATGATTGCA+AGG + chr2_1:17191152-17191171 Msa0198570:CDS 40.0%
! TTTGGCTTACCTTGCAATCA+TGG - chr2_1:17191164-17191183 Msa0198560:intron 40.0%
ATCGTTCACGACTTTGAATG+TGG - chr2_1:17192106-17192125 Msa0198560:intron 40.0%
ACATGTCGAAACTCATGAAG+TGG - chr2_1:17192141-17192160 Msa0198560:intron 40.0%
TTGGCTGTGACATTAATGTC+AGG + chr2_1:17192472-17192491 Msa0198570:intron 40.0%
CTGTGACATTAATGTCAGGA+TGG + chr2_1:17192476-17192495 Msa0198570:intron 40.0%
AGGAGAGCAGGAAATGAAAA+AGG + chr2_1:17192539-17192558 Msa0198570:intron 40.0%
TCAACATGTTACCCTAAACC+AGG + chr2_1:17192578-17192597 Msa0198570:intron 40.0%
AGTAGCAACATAAGACACTC+TGG + chr2_1:17192650-17192669 Msa0198570:intron 40.0%
!! CATAAGACACTCTGGAGTAA+TGG + chr2_1:17192658-17192677 Msa0198570:intron 40.0%
!! GGGACTTTTCTATTTCTTGG+TGG + chr2_1:17192679-17192698 Msa0198570:intron 40.0%
CACGTGATGAAGAGATATCA+AGG - chr2_1:17192981-17193000 Msa0198560:intron 40.0%
CCATTATCGCGCAATCTTAT+GGG - chr2_1:17193093-17193112 Msa0198560:intron 40.0%
TCCATTATCGCGCAATCTTA+TGG - chr2_1:17193094-17193113 Msa0198560:intron 40.0%
GCTCGTAAATTGAGATGTAC+CGG + chr2_1:17193135-17193154 Msa0198570:intron 40.0%
TATACACGTGCAATGAGAGA+AGG + chr2_1:17193533-17193552 Msa0198570:intron 40.0%
AGAGAGATGAGAGATATTGG+TGG - chr2_1:17193604-17193623 Msa0198560:intron 40.0%
GAGAGAGAGATGAGAGATAT+TGG - chr2_1:17193607-17193626 Msa0198560:intron 40.0%
ATGTGGTATCAGAGTTCTGT+TGG - chr2_1:17194473-17194492 Msa0198560:intron 40.0%
AGAACTCTGATACCACATGT+TGG + chr2_1:17194475-17194494 Msa0198570:intron 40.0%
!! AGCTTGTTAAGTCCAACATG+TGG - chr2_1:17194490-17194509 Msa0198560:intron 40.0%
TAGCGTTGTGCTGCAAATTT+CGG - chr2_1:17194553-17194572 Msa0198560:intron 40.0%
! GTGTATGACTTTGGTGTAAG+AGG - chr2_1:17194643-17194662 Msa0198560:intron 40.0%
ATTATAGGACCCACAACATG+TGG - chr2_1:17194736-17194755 Msa0198560:intron 40.0%
GTTGTGGGTCCTATAATAAG+AGG + chr2_1:17194739-17194758 Msa0198570:intron 40.0%
!! GTAAACGCATAGATTGGCTT+TGG + chr2_1:17194860-17194879 Msa0198570:intron 40.0%
!! TGGCTTTGGAACATCTGAAA+AGG + chr2_1:17194874-17194893 Msa0198570:intron 40.0%
! AGGCAGATTGTTCCATCTTT+TGG + chr2_1:17194894-17194913 Msa0198570:intron 40.0%
GGAACGTACCTCAAAAACTT+GGG - chr2_1:17195014-17195033 Msa0198560:intron 40.0%
AGGAACGTACCTCAAAAACT+TGG - chr2_1:17195015-17195034 Msa0198560:intron 40.0%
CACAAACTAGGAAGCTTTCA+TGG + chr2_1:17196288-17196307 Msa0198570:intron 40.0%
TTGACAACAACACTAGTGCT+AGG - chr2_1:17196319-17196338 Msa0198560:intron 40.0%
CTAAATGCAGCTGATGAGAA+TGG - chr2_1:17196347-17196366 Msa0198560:intron 40.0%
CATTCTCATCAGCTGCATTT+AGG + chr2_1:17196345-17196364 Msa0198570:intron 40.0%
! ACTTTATTTGCGACAGATCC+TGG - chr2_1:17196427-17196446 Msa0198560:intron 40.0%
!! GCTGAAGTAGTTGATGAATC+AGG + chr2_1:17196499-17196518 Msa0198570:intron 40.0%
TGTAGGTAAGTTTGATGGAG+AGG - chr2_1:17196535-17196554 Msa0198560:intron 40.0%
AATGTCCTTGGACAGTACTA+TGG + chr2_1:17196652-17196671 Msa0198570:intron 40.0%
GAGACTAAACCATGATTGCA+AGG + chr2_1:17191152-17191171 Msa0198570:CDS 40.0%
!! CATAACCGCCATTTTGCATT+GGG - chr2_1:17197272-17197291 Msa0198560:intron 40.0%
!! ACATAACCGCCATTTTGCAT+TGG - chr2_1:17197273-17197292 Msa0198560:intron 40.0%
AATGGCGGTTATGTCATCTA+TGG + chr2_1:17197279-17197298 Msa0198570:CDS 40.0%
GGTTATGTCATCTATGGAGT+TGG + chr2_1:17197285-17197304 Msa0198570:CDS 40.0%
CATCAACATTCAGGTGCAAT+TGG + chr2_1:17197309-17197328 Msa0198570:CDS 40.0%
CACGAAATTGGAGCCTTTCA+TGG + chr2_1:17190341-17190360 Msa0198570:CDS 45.0%
TTGAGTGCAATATGACCCCT+TGG - chr2_1:17190523-17190542 Msa0198560:three_prime_UTR 45.0%
TGCTATTGATACTAGGGGTG+TGG + chr2_1:17190846-17190865 Msa0198570:CDS 45.0%
! TAGGGGTGTGGAAGATAGAA+TGG + chr2_1:17190858-17190877 Msa0198570:CDS 45.0%
! AGGGGTGTGGAAGATAGAAT+GGG + chr2_1:17190859-17190878 Msa0198570:CDS 45.0%
GCAAGCTTCCCAATGCAAAA+TGG + chr2_1:17191726-17191745 Msa0198570:intron 45.0%
AGCTTCCCAATGCAAAATGG+TGG + chr2_1:17191729-17191748 Msa0198570:intron 45.0%
CAATTGCACCTGAATGCTGA+TGG - chr2_1:17191776-17191795 Msa0198560:three_prime_UTR 45.0%
CATCAGCATTCAGGTGCAAT+TGG + chr2_1:17191774-17191793 Msa0198570:intron 45.0%
TATGGAAAAGGAAGGAGAGC+AGG + chr2_1:17192527-17192546 Msa0198570:intron 45.0%
CCCATAAGATTGCGCGATAA+TGG + chr2_1:17193090-17193109 Msa0198570:intron 45.0%
TTGACCACAATACACGTTCG+TGG + chr2_1:17193996-17194015 Msa0198570:intron 45.0%
GGAATTCAAAACTCCCTTGC+AGG + chr2_1:17194281-17194300 Msa0198570:intron 45.0%
CCTGGACTGAGTTCAATCTT+AGG - chr2_1:17196409-17196428 Msa0198560:intron 45.0%
CCTAAGATTGAACTCAGTCC+AGG + chr2_1:17196406-17196425 Msa0198570:intron 45.0%
CAAGACCATAGTACTGTCCA+AGG - chr2_1:17196660-17196679 Msa0198560:intron 45.0%
CTTGGACAGTACTATGGTCT+TGG + chr2_1:17196658-17196677 Msa0198570:intron 45.0%
! GGTCTTGGATCTGAAACAAG+AGG + chr2_1:17196673-17196692 Msa0198570:intron 45.0%
ACTTCTATGCCATAAGGGTC+AGG - chr2_1:17196715-17196734 Msa0198560:intron 45.0%
GACCCTTATGGCATAGAAGT+TGG + chr2_1:17196715-17196734 Msa0198570:intron 45.0%
TGCTATTGATACTAGGGGTG+TGG + chr2_1:17190846-17190865 Msa0198570:CDS 45.0%
! TAGGGGTGTGGAAGATAGAA+TGG + chr2_1:17190858-17190877 Msa0198570:CDS 45.0%
! AGGGGTGTGGAAGATAGAAT+GGG + chr2_1:17190859-17190878 Msa0198570:CDS 45.0%
GCAAGCTTCCCAATGCAAAA+TGG + chr2_1:17191726-17191745 Msa0198570:intron 45.0%
AGCTTCCCAATGCAAAATGG+CGG + chr2_1:17191729-17191748 Msa0198570:intron 45.0%
! GGAGTTGGTCATCAACATTC+AGG + chr2_1:17197300-17197319 Msa0198570:CDS 45.0%
!! TTAAAATATTAAAGTAATAA+AGG - chr2_1:17192424-17192443 Msa0198560:intron 5.0%
GTGCTAGGATTGCCCATGAA+AGG - chr2_1:17190357-17190376 Msa0198560:three_prime_UTR 50.0%
GGGGTGTGGAAGATAGAATG+GGG + chr2_1:17190860-17190879 Msa0198570:CDS 50.0%
GTGGTCGCTGCATATAGCAT+CGG - chr2_1:17193883-17193902 Msa0198560:intron 50.0%
ACCACAATACACGTTCGTGG+TGG + chr2_1:17193999-17194018 Msa0198570:intron 50.0%
ACCACCACGAACGTGTATTG+TGG - chr2_1:17194003-17194022 Msa0198560:intron 50.0%
AACAATGTGACGGCCTGCAA+GGG - chr2_1:17194297-17194316 Msa0198560:intron 50.0%
AAACAATGTGACGGCCTGCA+AGG - chr2_1:17194298-17194317 Msa0198560:intron 50.0%
TGCTGGACAACCACATGTTG+TGG + chr2_1:17194723-17194742 Msa0198570:intron 50.0%
GCTGGACAACCACATGTTGT+GGG + chr2_1:17194724-17194743 Msa0198570:intron 50.0%
TATTCTGAGCCGTTAGACCG+CGG + chr2_1:17195823-17195842 Msa0198570:intron 50.0%
CACTATTTGCCGCGGTCTAA+CGG - chr2_1:17195835-17195854 Msa0198560:intron 50.0%
GTTGGCTACACTATTTGCCG+CGG - chr2_1:17195843-17195862 Msa0198560:intron 50.0%
GGGGTGTGGAAGATAGAATG+GGG + chr2_1:17190860-17190879 Msa0198570:CDS 50.0%
GGAGTTGGCCATCAGCATTC+AGG + chr2_1:17191765-17191784 Msa0198570:intron 55.0%
CGCGAAGCATAAACCCACGA+AGG - chr2_1:17194027-17194046 Msa0198560:intron 55.0%
! GTTCGTGGTGGTGCCTTCGT+GGG + chr2_1:17194011-17194030 Msa0198570:intron 60.0%
! CGTTCGTGGTGGTGCCTTCG+TGG + chr2_1:17194010-17194029 Msa0198570:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 17190319 17197365 17190319 ID=Msa0198570;Name=Msa0198570
chr2_1 mRNA 17190319 17197365 17190319 ID=Msa0198570-mRNA-1;Parent=Msa0198570;Name=Msa0198570-mRNA-1;_AED=0.28;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|342
chr2_1 exon 17190319 17191173 17190319 ID=Msa0198570-mRNA-1:exon:7292;Parent=Msa0198570-mRNA-1
chr2_1 exon 17197192 17197365 17197192 ID=Msa0198570-mRNA-1:exon:7293;Parent=Msa0198570-mRNA-1
chr2_1 CDS 17190319 17191173 17190319 ID=Msa0198570-mRNA-1:cds;Parent=Msa0198570-mRNA-1
chr2_1 CDS 17197192 17197365 17197192 ID=Msa0198570-mRNA-1:cds;Parent=Msa0198570-mRNA-1
Gene Sequence

>Msa0198570

ATGATCAACAAGAGGTTTGTGTCACGAAATTGGAGCCTTTCATGGGCAATCCTAGCACTAGTGTTATTGTCAAGCACACCATTCTCAACAGCTACTTTTGGGAAGACAAAAAAATATATCCAAACACAAGTTTTTTTTTCTCCTAAGATTGAACTAAGTCCAGGATCTGTTTCAAATAAATTTTATTATGATGTTGATTTTCCAAGGGGTCATATTGCACTCAAAAGTTTTAATGCTGAACTAGTAGATGAATCAGGGAATTCAGTACCTCTCCATCAAACTTATCTACACCATTGGACTGTTACAAGATACCACCAACCTAAAAATGTGACAAACAATAGTGAAGAAGATATTATTTTTAAAAGAAATCATGGATTTTGTCAAGGTAATGTTATTGAACAATACTATGGTAAAGGATCAGAAACAAGAGGCACAAATACATATATTCCTCAACCATATGGAATAGAAGTTGGTGATCCTGAAGAAATTCCAAAAGGGTATGAGGAAAAATGGTTTATTAATGTTCATGCTATTGATACTAGGGGTGTGGAAGATAGAATGGGGTGTACTGAGTGTAAGTGTGATTTGTATAGTGTTACAAAGGATGAAAATGGAGAAGCTTTGAGTCCAAATTATAAAGGTGGTTTGCAATGTTGTCCTGATAATAGTAAGTGTAAGCTGAGTAAAGGGTTTTTAGGATCAAAACAAAATCTTTATTTAAAATACACTGTAATGTGGATCAATTGGAAAGAGTATAAGTATATGGTGCCGGTCAAGATTTATATATTTGATGTGACTGATAGTTTGAAGATTTCAGATAAGTCCAAAGAAAAGAGACTAAACCATGATTGCAAGATTGAATATGAAGTAGAACCTTGCAGCACAAGTTATTTGAATCGTAGTGGTTGTGTTGATGTCAAGAGAGCAAGCTTCCCAATGCAAAATGGCGGTTATGTCATCTATGGAGTTGGTCATCAACATTCAGGTGCAATTGGATCAACTCTATATGGAAAGGTGAACATTAAATAA
Protein sequence

>Msa0198570

MINKRFVSRNWSLSWAILALVLLSSTPFSTATFGKTKKYIQTQVFFSPKIELSPGSVSNKFYYDVDFPRGHIALKSFNAELVDESGNSVPLHQTYLHHWTVTRYHQPKNVTNNSEEDIIFKRNHGFCQGNVIEQYYGKGSETRGTNTYIPQPYGIEVGDPEEIPKGYEEKWFINVHAIDTRGVEDRMGCTECKCDLYSVTKDENGEALSPNYKGGLQCCPDNSKCKLSKGFLGSKQNLYLKYTVMWINWKEYKYMVPVKIYIFDVTDSLKISDKSKEKRLNHDCKIEYEVEPCSTSYLNRSGCVDVKRASFPMQNGGYVIYGVGHQHSGAIGSTLYGKVNIK*