AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0203430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203430 MtrunA17_Chr2g0301171 91.753 194 16 0 1 194 1 194 1.53e-130 369
Msa0203430 MtrunA17_Chr2g0301171 92.661 109 8 0 193 301 94 202 2.42e-66 206
Msa0203430 MtrunA17_Chr2g0301181 69.912 226 40 3 1 198 1 226 6.75e-104 303
Msa0203430 MtrunA17_Chr2g0301181 55.474 137 33 3 193 301 94 230 5.15e-38 134
Msa0203430 MtrunA17_Chr2g0301191 71.429 210 48 2 1 198 1 210 2.33e-99 290
Msa0203430 MtrunA17_Chr2g0301191 64.486 107 33 1 200 301 108 214 5.63e-38 134
Msa0203430 MtrunA17_Chr1g0150691 46.835 158 66 4 14 156 17 171 1.15e-37 133
Msa0203430 MtrunA17_Chr1g0150631 40.777 206 87 6 14 200 33 222 6.22e-37 131
Msa0203430 MtrunA17_Chr1g0150671 39.524 210 98 6 14 198 41 246 3.32e-36 131
Msa0203430 MtrunA17_Chr1g0150661 38.725 204 85 7 18 202 34 216 2.20e-34 124
Msa0203430 MtrunA17_Chr3g0136551 63.218 87 28 1 19 101 65 151 2.29e-31 118
Msa0203430 MtrunA17_Chr3g0136541 63.529 85 27 1 21 101 42 126 2.62e-30 114
Msa0203430 MtrunA17_Chr7g0225131 70.588 68 17 1 14 81 24 88 1.04e-26 100
Msa0203430 MtrunA17_Chr3g0134161 68.421 57 18 0 19 75 45 101 2.54e-22 91.7
Msa0203430 MtrunA17_Chr4g0017851 42.500 120 62 2 6 119 106 224 1.23e-21 92.8
Msa0203430 MtrunA17_Chr1g0153151 64.912 57 20 0 19 75 44 100 7.64e-21 87.8
Msa0203430 MtrunA17_Chr7g0275841 44.944 89 45 1 9 93 14 102 9.72e-21 87.0
Msa0203430 MtrunA17_Chr5g0401871 48.780 82 38 1 19 96 25 106 1.41e-20 87.0
Msa0203430 MtrunA17_Chr5g0425561 50.617 81 36 1 16 92 170 250 3.84e-20 89.4
Msa0203430 MtrunA17_Chr3g0115631 59.016 61 25 0 16 76 147 207 7.34e-20 88.2
Msa0203430 MtrunA17_Chr2g0324131 58.065 62 26 0 14 75 213 274 3.00e-19 87.4
Msa0203430 MtrunA17_Chr1g0196781 55.932 59 26 0 18 76 151 209 5.19e-19 85.5
Msa0203430 MtrunA17_Chr8g0382491 55.738 61 27 0 16 76 110 170 5.67e-19 85.1
Msa0203430 MtrunA17_Chr8g0346741 44.872 78 35 1 18 87 38 115 8.24e-19 82.0
Msa0203430 MtrunA17_Chr1g0170531 53.030 66 30 1 13 77 83 148 1.05e-18 83.2
Msa0203430 MtrunA17_Chr3g0099871 41.176 119 63 3 19 133 27 142 2.12e-18 82.4
Msa0203430 MtrunA17_Chr5g0399441 48.649 74 38 0 2 75 11 84 2.94e-18 80.9
Msa0203430 MtrunA17_Chr6g0486701 62.069 58 22 0 18 75 43 100 3.36e-18 81.6
Msa0203430 MtrunA17_Chr2g0334031 43.902 82 46 0 12 93 110 191 3.47e-18 84.0
Msa0203430 MtrunA17_Chr4g0055781 50.000 74 36 1 3 75 86 159 3.77e-18 82.0
Msa0203430 MtrunA17_Chr2g0295421 44.156 77 43 0 2 78 79 155 9.44e-18 81.3
Msa0203430 MtrunA17_Chr2g0316931 59.649 57 23 0 19 75 31 87 1.94e-17 79.3
Msa0203430 MtrunA17_Chr3g0140161 39.655 116 61 2 14 129 38 144 1.94e-17 78.6
Msa0203430 MtrunA17_Chr7g0232261 58.621 58 24 0 19 76 61 118 3.02e-17 79.3
Msa0203430 MtrunA17_Chr8g0334801 57.895 57 24 0 19 75 52 108 3.61e-17 78.6
Msa0203430 MtrunA17_Chr1g0196871 44.872 78 36 2 19 89 16 93 4.39e-17 75.1
Msa0203430 MtrunA17_Chr2g0282621 53.623 69 30 1 19 87 15 81 5.20e-17 77.0
Msa0203430 MtrunA17_Chr2g0323171 56.897 58 25 0 19 76 65 122 6.87e-17 77.4
Msa0203430 MtrunA17_Chr4g0055801 50.704 71 32 2 6 75 143 211 7.64e-17 79.3
Msa0203430 MtrunA17_Chr4g0023411 56.897 58 25 0 19 76 65 122 8.83e-17 77.0
Msa0203430 MtrunA17_Chr1g0195151 46.053 76 40 1 2 77 61 135 1.10e-16 79.0
Msa0203430 MtrunA17_Chr7g0221501 54.386 57 26 0 19 75 51 107 1.17e-16 76.3
Msa0203430 MtrunA17_Chr8g0344961 40.964 83 49 0 11 93 116 198 1.52e-16 79.3
Msa0203430 MtrunA17_Chr4g0055951 51.562 64 31 0 12 75 67 130 1.61e-16 77.8
Msa0203430 MtrunA17_Chr8g0335331 57.627 59 24 1 19 76 125 183 2.27e-16 76.3
Msa0203430 MtrunA17_Chr8g0367911 55.357 56 25 0 19 74 44 99 2.73e-16 77.4
Msa0203430 MtrunA17_Chr4g0063751 33.588 131 63 2 16 141 4 115 2.82e-16 76.3
Msa0203430 MtrunA17_Chr8g0390091 51.613 62 30 0 14 75 32 93 3.61e-16 76.3
Msa0203430 MtrunA17_Chr8g0335311 57.627 59 24 1 19 76 96 154 4.02e-16 75.5
Msa0203430 MtrunA17_Chr8g0340311 53.448 58 27 0 19 76 47 104 5.29e-16 75.1
Msa0203430 MtrunA17_Chr3g0137174 53.333 60 28 0 19 78 8 67 5.64e-16 74.7
Msa0203430 MtrunA17_Chr2g0282651 56.140 57 25 0 19 75 70 126 5.73e-16 75.9
Msa0203430 MtrunA17_Chr7g0221471 52.632 57 27 0 19 75 51 107 7.83e-16 73.9
Msa0203430 MtrunA17_Chr2g0331231 53.448 58 27 0 18 75 40 97 8.78e-16 74.7
Msa0203430 MtrunA17_Chr8g0383591 39.252 107 62 2 19 125 145 248 9.38e-16 76.3
Msa0203430 MtrunA17_Chr4g0002631 53.333 60 28 0 19 78 8 67 1.34e-15 73.9
Msa0203430 MtrunA17_Chr1g0186671 58.333 60 24 1 19 77 19 78 1.44e-15 72.4
Msa0203430 MtrunA17_Chr4g0003421 51.667 60 29 0 16 75 37 96 1.59e-15 74.7
Msa0203430 MtrunA17_Chr4g0044881 50.794 63 31 0 13 75 108 170 1.63e-15 74.7
Msa0203430 MtrunA17_Chr4g0046161 54.839 62 23 2 19 77 57 116 1.63e-15 71.6
Msa0203430 MtrunA17_Chr5g0438801 56.140 57 25 0 19 75 51 107 2.25e-15 74.7
Msa0203430 MtrunA17_Chr1g0186731 55.000 60 26 1 19 77 21 80 2.29e-15 72.0
Msa0203430 MtrunA17_Chr4g0044871 54.386 57 26 0 19 75 96 152 2.91e-15 73.6
Msa0203430 MtrunA17_Chr2g0333011 49.180 61 31 0 15 75 3 63 2.98e-15 72.4
Msa0203430 MtrunA17_Chr5g0412641 52.381 63 28 1 19 79 46 108 3.63e-15 75.1
Msa0203430 MtrunA17_Chr5g0396301 50.000 60 28 1 19 76 18 77 3.75e-15 71.6
Msa0203430 MtrunA17_Chr5g0438831 54.386 57 26 0 19 75 46 102 3.99e-15 73.9
Msa0203430 MtrunA17_Chr3g0114761 44.915 118 43 4 1 102 1 112 4.21e-15 73.2
Msa0203430 MtrunA17_Chr1g0183981 50.000 76 36 2 1 74 56 131 4.36e-15 72.8
Msa0203430 MtrunA17_Chr4g0044911 54.386 57 26 0 19 75 96 152 4.57e-15 73.2
Msa0203430 MtrunA17_Chr8g0375031 53.571 56 26 0 19 74 125 180 4.97e-15 72.8
Msa0203430 MtrunA17_Chr1g0184081 53.333 60 27 1 19 77 21 80 5.64e-15 70.9
Msa0203430 MtrunA17_Chr4g0044901 54.386 57 26 0 19 75 96 152 7.90e-15 72.4
Msa0203430 MtrunA17_Chr6g0473961 36.937 111 66 1 1 107 32 142 8.31e-15 72.0
Msa0203430 MtrunA17_Chr5g0396181 45.745 94 51 0 7 100 9 102 9.83e-15 71.2
Msa0203430 MtrunA17_Chr6g0473981 34.091 132 81 2 1 128 32 161 1.00e-14 72.4
Msa0203430 MtrunA17_Chr7g0265851 52.542 59 28 0 18 76 23 81 1.57e-14 71.2
Msa0203430 MtrunA17_Chr2g0283171 48.611 72 30 3 8 77 56 122 1.91e-14 69.7
Msa0203430 MtrunA17_Chr5g0437671 49.275 69 31 1 19 87 85 149 2.12e-14 73.2
Msa0203430 MtrunA17_Chr1g0158971 38.889 90 55 0 19 108 115 204 2.47e-14 72.4
Msa0203430 MtrunA17_Chr6g0473931 40.000 95 57 0 18 112 32 126 3.41e-14 70.1
Msa0203430 MtrunA17_Chr1g0184061 46.154 78 38 2 1 74 56 133 4.02e-14 70.1
Msa0203430 MtrunA17_Chr8g0335321 50.847 59 28 1 19 76 96 154 4.24e-14 70.1
Msa0203430 MtrunA17_Chr7g0257911 53.448 58 27 0 19 76 31 88 4.44e-14 71.2
Msa0203430 MtrunA17_Chr2g0321071 40.909 88 50 2 18 103 46 133 5.16e-14 70.1
Msa0203430 MtrunA17_Chr5g0437371 53.571 56 26 0 19 74 66 121 5.20e-14 71.6
Msa0203430 MtrunA17_Chr3g0126321 31.214 173 104 5 19 180 113 281 5.25e-14 71.6
Msa0203430 MtrunA17_Chr5g0396741 50.617 81 38 1 18 96 116 196 6.19e-14 71.2
Msa0203430 MtrunA17_Chr2g0297331 46.575 73 38 1 6 77 1 73 6.21e-14 67.8
Msa0203430 MtrunA17_Chr6g0474001 36.036 111 67 1 1 107 32 142 9.15e-14 70.1
Msa0203430 MtrunA17_Chr2g0283181 44.156 77 39 2 3 75 130 206 1.01e-13 70.1
Msa0203430 MtrunA17_Chr1g0203861 54.386 57 26 0 18 74 43 99 1.13e-13 68.6
Msa0203430 MtrunA17_Chr6g0473781 38.889 90 55 0 18 107 56 145 1.19e-13 68.9
Msa0203430 MtrunA17_Chr6g0473741 37.778 90 56 0 18 107 65 154 1.23e-13 68.9
Msa0203430 MtrunA17_Chr5g0396191 59.649 57 23 0 19 75 11 67 1.34e-13 68.2
Msa0203430 MtrunA17_Chr5g0424051 52.632 76 35 1 1 75 78 153 1.45e-13 69.7
Msa0203430 MtrunA17_Chr7g0250731 50.847 59 28 1 19 76 61 119 1.71e-13 68.2
Msa0203430 MtrunA17_Chr7g0252381 51.786 56 27 0 19 74 42 97 1.95e-13 69.3
Msa0203430 MtrunA17_Chr7g0250721 50.847 59 28 1 19 76 61 119 2.16e-13 67.8
Msa0203430 MtrunA17_Chr2g0286161 48.214 56 29 0 19 74 50 105 2.41e-13 69.3
Msa0203430 MtrunA17_Chr7g0261151 52.459 61 26 2 19 77 20 79 2.73e-13 65.9
Msa0203430 MtrunA17_Chr4g0066931 42.857 63 36 0 12 74 46 108 3.18e-13 69.3
Msa0203430 MtrunA17_Chr5g0396171 53.571 56 26 0 21 76 26 81 3.40e-13 64.7
Msa0203430 MtrunA17_Chr7g0261101 52.459 61 26 2 19 77 20 79 4.07e-13 65.9
Msa0203430 MtrunA17_Chr6g0473861 38.636 88 54 0 18 105 62 149 4.61e-13 68.2
Msa0203430 MtrunA17_Chr7g0250711 50.847 59 28 1 19 76 60 118 4.83e-13 67.0
Msa0203430 MtrunA17_Chr6g0473971 43.590 78 40 1 1 74 32 109 5.98e-13 67.4
Msa0203430 MtrunA17_Chr6g0473941 54.386 57 26 0 18 74 32 88 6.37e-13 66.6
Msa0203430 MtrunA17_Chr1g0146191 50.000 76 36 1 3 76 29 104 7.52e-13 67.4
Msa0203430 MtrunA17_Chr1g0189941 46.429 56 30 0 19 74 24 79 1.43e-12 64.7
Msa0203430 MtrunA17_Chr1g0184031 54.237 59 26 1 17 74 82 140 1.45e-12 65.9
Msa0203430 MtrunA17_Chr1g0184011 54.545 55 24 1 21 74 86 140 1.49e-12 65.9
Msa0203430 MtrunA17_Chr4g0055761 51.724 58 27 1 19 75 145 202 1.67e-12 66.2
Msa0203430 MtrunA17_Chr6g0473881 52.632 57 27 0 18 74 109 165 1.68e-12 66.6
Msa0203430 MtrunA17_Chr4g0026931 43.478 69 38 1 10 77 122 190 1.69e-12 66.6
Msa0203430 MtrunA17_Chr5g0432821 40.789 76 34 1 19 94 124 188 2.35e-12 66.2
Msa0203430 MtrunA17_Chr1g0186681 47.541 61 30 1 19 77 19 79 2.46e-12 63.2
Msa0203430 MtrunA17_Chr5g0398091 40.449 89 47 1 18 100 53 141 2.65e-12 65.1
Msa0203430 MtrunA17_Chr4g0026881 43.077 65 36 1 14 77 92 156 2.66e-12 65.5
Msa0203430 MtrunA17_Chr5g0398061 40.449 89 47 1 18 100 48 136 4.02e-12 64.7
Msa0203430 MtrunA17_Chr6g0486711 45.783 83 45 0 18 100 48 130 4.38e-12 64.7
Msa0203430 MtrunA17_Chr8g0387801 50.000 56 28 0 19 74 107 162 5.06e-12 65.5
Msa0203430 MtrunA17_Chr6g0473771 44.156 77 38 1 18 94 42 113 5.37e-12 62.0
Msa0203430 MtrunA17_Chr5g0398081 34.375 128 72 3 18 134 48 174 5.64e-12 64.3
Msa0203430 MtrunA17_Chr5g0396911 40.816 98 50 3 19 108 112 209 6.06e-12 65.1
Msa0203430 MtrunA17_Chr7g0261181 56.667 60 25 1 19 77 13 72 6.41e-12 62.0
Msa0203430 MtrunA17_Chr1g0183961 54.688 64 28 1 15 77 23 86 7.41e-12 62.4
Msa0203430 MtrunA17_Chr1g0170471 39.759 83 43 3 27 102 91 173 8.54e-12 62.8
Msa0203430 MtrunA17_Chr8g0378811 34.545 110 60 2 15 118 51 154 1.17e-11 63.9
Msa0203430 MtrunA17_Chr1g0184071 52.632 57 26 1 19 74 69 125 1.20e-11 62.4
Msa0203430 MtrunA17_Chr4g0062551 46.552 58 31 0 19 76 53 110 1.40e-11 61.2
Msa0203430 MtrunA17_Chr1g0200931 40.000 75 41 2 1 74 8 79 1.53e-11 61.2
Msa0203430 MtrunA17_Chr4g0062161 46.552 58 31 0 19 76 53 110 2.61e-11 62.0
Msa0203430 MtrunA17_Chr1g0149331 52.632 57 27 0 19 75 7 63 3.89e-11 61.2
Msa0203430 MtrunA17_Chr4g0057241 48.276 58 29 1 19 76 15 71 4.47e-11 60.5
Msa0203430 MtrunA17_Chr3g0137831 35.200 125 68 3 19 141 8 121 6.67e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203430 AT1G19210.1 49.444 180 61 6 17 186 10 169 7.61e-46 153
Msa0203430 AT1G74930.1 45.918 196 88 4 1 189 1 185 4.94e-40 139
Msa0203430 AT5G21960.1 71.765 85 24 0 16 100 4 88 8.13e-39 136
Msa0203430 AT4G31060.1 38.251 183 93 8 8 185 16 183 6.72e-29 109
Msa0203430 AT4G06746.1 60.938 64 25 0 14 77 31 94 1.20e-22 92.0
Msa0203430 AT1G46768.3 62.069 58 22 0 19 76 31 88 3.85e-22 90.5
Msa0203430 AT1G46768.1 62.069 58 22 0 19 76 31 88 4.18e-22 90.9
Msa0203430 AT1G46768.2 62.069 58 22 0 19 76 31 88 4.18e-22 90.9
Msa0203430 AT2G22200.1 63.333 60 22 0 17 76 69 128 1.46e-21 92.0
Msa0203430 AT4G13620.1 45.783 83 45 0 2 84 215 297 3.40e-21 93.2
Msa0203430 AT2G23340.1 36.986 146 70 4 12 135 21 166 3.48e-20 86.3
Msa0203430 AT4G36900.1 58.462 65 27 0 11 75 22 86 6.37e-20 85.9
Msa0203430 AT1G36060.1 60.000 60 24 0 16 75 140 199 6.37e-20 88.6
Msa0203430 AT1G21910.1 61.404 57 22 0 19 75 50 106 6.58e-20 87.0
Msa0203430 AT1G78080.1 59.016 61 25 0 16 76 149 209 7.05e-20 88.6
Msa0203430 AT1G22190.1 57.377 61 26 0 16 76 80 140 7.64e-20 87.4
Msa0203430 AT1G01250.1 43.678 87 49 0 7 93 33 119 8.18e-20 85.5
Msa0203430 AT4G39780.1 59.322 59 24 0 18 76 92 150 1.23e-19 87.0
Msa0203430 AT4G28140.1 41.228 114 50 3 16 129 140 236 3.41e-19 86.3
Msa0203430 AT1G71450.1 61.017 59 23 0 17 75 22 80 4.59e-19 83.6
Msa0203430 AT5G65130.2 55.000 60 27 0 17 76 111 170 7.60e-19 84.7
Msa0203430 AT5G65130.1 55.000 60 27 0 17 76 109 168 7.91e-19 84.7
Msa0203430 AT5G67190.1 61.404 57 22 0 19 75 21 77 8.48e-19 82.8
Msa0203430 AT5G61600.1 63.333 60 21 1 19 77 88 147 1.21e-18 83.6
Msa0203430 AT5G47230.1 54.054 74 32 2 3 75 141 213 1.38e-18 84.7
Msa0203430 AT1G71520.1 52.239 67 28 1 14 76 9 75 2.20e-18 80.5
Msa0203430 AT5G51190.1 53.731 67 30 1 10 75 63 129 2.22e-18 82.4
Msa0203430 AT2G20880.1 56.452 62 27 0 14 75 182 243 3.73e-18 84.0
Msa0203430 AT3G50260.1 57.377 61 26 0 19 79 21 81 4.02e-18 80.1
Msa0203430 AT2G47520.1 48.571 70 36 0 7 76 38 107 4.59e-18 80.5
Msa0203430 AT5G25810.1 47.727 88 38 2 18 101 35 118 6.30e-18 81.3
Msa0203430 AT4G32800.1 40.000 100 60 0 1 100 1 100 7.75e-18 80.9
Msa0203430 AT3G20310.1 50.649 77 38 0 1 77 9 85 1.83e-17 80.5
Msa0203430 AT1G03800.1 47.436 78 36 1 3 75 32 109 1.90e-17 80.5
Msa0203430 AT2G33710.2 53.623 69 30 1 9 75 58 126 3.82e-17 79.3
Msa0203430 AT2G44940.1 48.750 80 30 1 19 87 100 179 4.37e-17 80.1
Msa0203430 AT2G33710.1 53.623 69 30 1 9 75 58 126 4.39e-17 79.0
Msa0203430 AT3G16280.1 56.897 58 25 0 18 75 60 117 6.45e-17 78.6
Msa0203430 AT3G15210.1 57.895 57 24 0 19 75 25 81 7.80e-17 78.2
Msa0203430 AT5G11590.1 45.238 84 46 0 18 101 50 133 8.53e-17 78.6
Msa0203430 AT4G11140.1 37.615 109 63 2 19 124 87 193 9.24e-17 79.3
Msa0203430 AT5G07580.1 55.224 67 29 1 12 77 103 169 1.01e-16 77.4
Msa0203430 AT3G16280.2 56.897 58 25 0 18 75 78 135 1.06e-16 78.6
Msa0203430 AT1G22810.1 54.839 62 26 1 17 76 12 73 1.10e-16 75.9
Msa0203430 AT4G25470.1 39.823 113 67 1 18 129 50 162 1.47e-16 77.4
Msa0203430 AT5G44210.1 57.895 57 24 0 19 75 33 89 2.34e-16 76.3
Msa0203430 AT2G35700.1 54.386 57 26 0 19 75 45 101 2.47e-16 76.3
Msa0203430 AT5G25390.2 53.333 60 28 0 16 75 4 63 3.08e-16 75.9
Msa0203430 AT1G50640.1 57.627 59 25 0 19 77 28 86 6.24e-16 75.9
Msa0203430 AT1G72360.1 37.805 82 51 0 12 93 18 99 6.93e-16 75.5
Msa0203430 AT1G72360.3 35.165 91 59 0 3 93 58 148 8.47e-16 76.3
Msa0203430 AT2G25820.1 46.053 76 41 0 18 93 25 100 9.47e-16 75.1
Msa0203430 AT4G17490.1 52.113 71 31 2 6 75 126 194 9.59e-16 76.3
Msa0203430 AT1G28370.1 49.296 71 33 1 8 75 6 76 1.14e-15 73.6
Msa0203430 AT3G16770.1 43.243 74 42 0 3 76 63 136 1.15e-15 75.5
Msa0203430 AT5G43410.1 47.692 65 33 1 14 77 10 74 1.17e-15 72.8
Msa0203430 AT1G15360.1 52.632 57 27 0 19 75 7 63 1.30e-15 74.3
Msa0203430 AT1G15360.2 52.632 57 27 0 19 75 7 63 1.30e-15 74.3
Msa0203430 AT1G28370.2 49.296 71 33 1 8 75 44 114 1.81e-15 73.9
Msa0203430 AT1G72360.2 37.349 83 52 0 11 93 68 150 1.87e-15 75.1
Msa0203430 AT2G44840.1 50.725 69 33 1 9 76 82 150 2.07e-15 74.3
Msa0203430 AT3G60490.1 49.315 73 34 1 3 75 58 127 2.08e-15 74.7
Msa0203430 AT4G16750.1 52.632 57 27 0 19 75 40 96 2.17e-15 73.2
Msa0203430 AT1G28360.1 55.172 58 26 0 19 76 12 69 3.10e-15 73.2
Msa0203430 AT4G27950.1 45.455 77 42 0 2 78 101 177 4.88e-15 74.7
Msa0203430 AT4G25490.1 56.140 57 25 0 18 74 47 103 5.16e-15 73.2
Msa0203430 AT5G25190.1 50.794 63 31 0 19 81 8 70 5.62e-15 72.0
Msa0203430 AT5G18560.1 40.845 71 42 0 11 81 47 117 7.90e-15 74.3
Msa0203430 AT5G13330.1 41.772 79 41 1 2 75 17 95 8.42e-15 72.4
Msa0203430 AT1G77640.1 46.392 97 46 1 19 109 43 139 8.91e-15 72.8
Msa0203430 AT4G25480.1 52.542 59 28 0 18 76 50 108 1.45e-14 71.6
Msa0203430 AT3G23230.1 50.794 63 30 1 16 77 17 79 1.49e-14 70.1
Msa0203430 AT1G12980.1 50.820 61 30 0 14 74 52 112 1.71e-14 73.2
Msa0203430 AT5G51990.1 41.573 89 52 0 18 106 53 141 1.87e-14 71.6
Msa0203430 AT5G61890.1 52.632 57 27 0 19 75 90 146 2.58e-14 71.6
Msa0203430 AT3G57600.1 53.448 58 27 0 19 76 28 85 2.97e-14 72.0
Msa0203430 AT1G64380.1 58.824 68 26 1 18 83 135 202 3.16e-14 72.4
Msa0203430 AT1G33760.1 63.158 57 21 0 19 75 20 76 3.32e-14 70.1
Msa0203430 AT2G46310.1 49.180 61 31 0 19 79 99 159 5.30e-14 71.2
Msa0203430 AT3G61630.1 32.639 144 78 4 19 154 105 237 6.18e-14 71.6
Msa0203430 AT2G40340.2 49.123 57 29 0 19 75 14 70 7.48e-14 70.9
Msa0203430 AT2G40340.5 49.123 57 29 0 19 75 14 70 7.48e-14 70.9
Msa0203430 AT2G40340.4 49.123 57 29 0 19 75 14 70 7.48e-14 70.9
Msa0203430 AT1G24590.1 53.571 56 26 0 19 74 58 113 9.90e-14 70.9
Msa0203430 AT1G75490.1 50.000 60 30 0 16 75 39 98 1.65e-13 68.6
Msa0203430 AT2G36450.1 55.000 60 26 1 18 76 14 73 1.73e-13 68.2
Msa0203430 AT2G40340.3 49.123 57 29 0 19 75 72 128 2.08e-13 69.7
Msa0203430 AT3G23240.1 47.826 69 33 2 8 74 71 138 2.29e-13 68.6
Msa0203430 AT5G25390.1 51.667 60 26 1 16 75 4 60 2.35e-13 67.8
Msa0203430 AT2G40340.1 49.123 57 29 0 19 75 72 128 2.46e-13 70.1
Msa0203430 AT2G40340.6 49.123 57 29 0 19 75 79 135 2.66e-13 69.7
Msa0203430 AT3G11020.1 51.724 58 28 0 19 76 78 135 3.52e-13 69.3
Msa0203430 AT5G13910.1 50.000 54 27 0 21 74 22 75 5.22e-13 67.4
Msa0203430 AT1G12610.1 34.951 103 67 0 3 105 14 116 5.31e-13 67.4
Msa0203430 AT1G28160.1 50.000 56 28 0 19 74 39 94 5.94e-13 67.8
Msa0203430 AT5G47220.1 53.448 58 26 1 19 75 117 174 5.96e-13 67.8
Msa0203430 AT1G63030.2 39.773 88 53 0 18 105 29 116 6.36e-13 66.6
Msa0203430 AT1G63030.1 39.773 88 53 0 18 105 29 116 6.36e-13 66.6
Msa0203430 AT5G53290.1 51.786 56 27 0 19 74 125 180 7.90e-13 68.6
Msa0203430 AT1G44830.1 63.793 58 20 1 19 75 35 92 1.06e-12 66.6
Msa0203430 AT5G18450.1 51.786 56 27 0 19 74 34 89 1.09e-12 67.8
Msa0203430 AT4G17500.1 53.448 58 26 1 19 75 148 205 1.25e-12 67.0
Msa0203430 AT5G05410.1 50.877 57 28 0 19 75 79 135 1.37e-12 67.8
Msa0203430 AT5G05410.2 50.877 57 28 0 19 75 79 135 1.38e-12 67.4
Msa0203430 AT4G23750.2 50.000 60 30 0 19 78 122 181 1.43e-12 67.8
Msa0203430 AT4G23750.1 50.000 60 30 0 19 78 122 181 1.43e-12 67.8
Msa0203430 AT1G12890.1 42.105 76 42 1 1 74 1 76 1.46e-12 66.2
Msa0203430 AT2G31230.1 54.237 59 24 2 19 75 86 143 1.96e-12 66.2
Msa0203430 AT5G50080.2 52.308 65 31 0 13 77 80 144 5.24e-12 64.7
Msa0203430 AT5G50080.1 52.308 65 31 0 13 77 71 135 5.85e-12 64.3
Msa0203430 AT1G43160.1 55.932 59 26 0 19 77 61 119 2.01e-11 62.4
Msa0203430 AT5G19790.1 41.176 68 40 0 13 80 16 83 2.10e-11 63.5
Msa0203430 AT1G77200.1 50.685 73 33 2 3 75 30 99 2.66e-11 63.2
Msa0203430 AT5G11190.1 51.667 60 29 0 16 75 4 63 5.07e-11 61.2
Msa0203430 AT5G61590.1 50.667 75 35 2 4 77 93 166 6.16e-11 61.2
Msa0203430 AT2G40350.2 45.000 60 33 0 19 78 74 133 8.08e-11 60.1
Msa0203430 AT2G40350.1 45.000 60 33 0 19 78 67 126 9.42e-11 59.7
Msa0203430 AT5G07310.1 52.632 57 27 0 19 75 92 148 9.72e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGGTTACTCTATGTTTC+CGG 0.169017 2_1:-27239275 Msa0203430:CDS
TCTTCTACATAATCAAAATT+TGG 0.223537 2_1:+27236794 None:intergenic
TAATTCCAGACCTGTTCTTA+TGG 0.268896 2_1:-27236754 Msa0203430:CDS
GTCAGGTTACTCTATGTTCC+CGG 0.302308 2_1:-27236858 Msa0203430:CDS
CGAAAATAACCCGTTTATCT+TGG 0.306193 2_1:+27239318 None:intergenic
CTGTTCTTATGGAATTTCTA+AGG 0.312038 2_1:-27236743 None:intergenic
CAAACAGCCGCCAAAGAATA+TGG 0.317582 2_1:-27239639 Msa0203430:CDS
AAGAACCTAACCATATTCTT+TGG 0.331380 2_1:+27239629 None:intergenic
TCAGGTTACTCTATGTTTCC+GGG 0.334392 2_1:-27239274 Msa0203430:CDS
CATATTCTTTGGCGGCTGTT+TGG 0.355180 2_1:+27239640 None:intergenic
GGCAACAACATTGTTGTCTA+TGG 0.373195 2_1:-27236975 Msa0203430:CDS
AATGATCCTCCGGACATTGC+CGG 0.391822 2_1:-27239523 Msa0203430:CDS
GACAACAACATTGGAGTCTA+TGG 0.401510 2_1:-27239392 Msa0203430:CDS
TCTTCTACATAATCAAAATC+TGG 0.407505 2_1:+27239211 None:intergenic
GAGGAGTAAGGAAGAGGAAG+TGG 0.415699 2_1:-27239690 Msa0203430:CDS
CTTAGAAATTCCATAAGAAC+AGG 0.422828 2_1:+27236744 None:intergenic
GACCTTCCTCCGGCAATGTC+CGG 0.423798 2_1:+27239514 None:intergenic
GCAATGTCCGGAGGATCATT+AGG 0.427362 2_1:+27239526 None:intergenic
AAATGCACGTGCTGCCTTCA+CGG 0.435634 2_1:+27239597 None:intergenic
ATTGTGACTCCAAGGAAAAC+AGG 0.436981 2_1:-27236910 Msa0203430:CDS
GATTGTGACTCCAAGATAAA+CGG 0.441541 2_1:-27239328 Msa0203430:CDS
GATGATGACGGTGTTTCAAC+AGG 0.454460 2_1:+27237007 None:intergenic
AGGAGTAAGGAAGAGGAAGT+GGG 0.462607 2_1:-27239689 Msa0203430:CDS
TAATCAAAATTTGGCATCTC+CGG 0.463417 2_1:+27236803 None:intergenic
AAATTCCATAAGAACAGGTC+TGG 0.465834 2_1:+27236749 None:intergenic
CTTCATTGTATAGAGGAGTA+AGG 0.469830 2_1:-27239702 Msa0203430:CDS
GATGATGACGGTGTTTCAAA+CGG 0.471783 2_1:+27239424 None:intergenic
TAATCAAAATCTGGCATCTC+CGG 0.472745 2_1:+27239220 None:intergenic
AGTGATTCTTCATTGTATAG+AGG 0.473213 2_1:-27239709 Msa0203430:CDS
ATCTGTCTGAAGAGTCATAT+CGG 0.476363 2_1:+27239348 None:intergenic
AGAAGAAAACATGGATGGAT+TGG 0.487395 2_1:-27236777 Msa0203430:CDS
ATTGTGACTCCAAGATAAAC+GGG 0.494475 2_1:-27239327 Msa0203430:CDS
TGTATAGAGGAGTAAGGAAG+AGG 0.501191 2_1:-27239696 Msa0203430:CDS
AACCTAACCATATTCTTTGG+CGG 0.508177 2_1:+27239632 None:intergenic
GTTTGAAACACCGTCATCAT+CGG 0.511880 2_1:-27239422 Msa0203430:CDS
TCAGGTTACTCTATGTTCCC+GGG 0.514444 2_1:-27236857 Msa0203430:CDS
AGAAGAGAACATGGATGGGT+TGG 0.522656 2_1:-27239194 Msa0203430:intron
TATGTAGAAGAGAACATGGA+TGG 0.543112 2_1:-27239199 Msa0203430:CDS
ACCGTCATCATCGGAGGGGA+CGG 0.544793 2_1:-27236996 Msa0203430:CDS
TGTTGAAACACCGTCATCAT+CGG 0.547100 2_1:-27237005 Msa0203430:CDS
CTCCGGACATTGCCGGAGGA+AGG 0.547543 2_1:-27239516 Msa0203430:CDS
GGAGTAAGGAAGAGGAAGTG+GGG 0.557751 2_1:-27239688 Msa0203430:CDS
TTCTTATGACTCAGCCGTGA+AGG 0.563628 2_1:-27239611 Msa0203430:CDS
TGATTATGTAGAAGAGAACA+TGG 0.563898 2_1:-27239203 Msa0203430:CDS
AGAGTCATATCGGATAGAGC+AGG 0.563985 2_1:+27239358 None:intergenic
TATGTAGAAGAAAACATGGA+TGG 0.564541 2_1:-27236782 Msa0203430:CDS
ATGTGTCAAGGACCTTCCTC+CGG 0.566921 2_1:+27239504 None:intergenic
AGCCGCCAAAGAATATGGTT+AGG 0.567194 2_1:-27239634 Msa0203430:CDS
GAAACACCGTCATCATCGGA+TGG 0.575887 2_1:-27239418 Msa0203430:CDS
TGATTATGTAGAAGAAAACA+TGG 0.577112 2_1:-27236786 Msa0203430:CDS
TTGTGGCGATTTCTACGTGC+CGG 0.582250 2_1:-27236822 Msa0203430:CDS
TTGTGGCGATTTCTACGTGC+CGG 0.582250 2_1:-27239239 Msa0203430:CDS
TTCTGCTCTATCCGATGTGA+CGG 0.584132 2_1:-27236942 Msa0203430:CDS
GGATGGGACGACAACAACAT+TGG 0.587934 2_1:-27239401 Msa0203430:CDS
ATGTAGAAGAGAACATGGAT+GGG 0.618316 2_1:-27239198 Msa0203430:CDS
CTTCCTCCGGCAATGTCCGG+AGG 0.618457 2_1:+27239517 None:intergenic
GCCGTCCCCTCCGATGATGA+CGG 0.620101 2_1:+27236995 None:intergenic
GAAACACCGTCATCATCGGA+GGG 0.621202 2_1:-27237001 Msa0203430:CDS
TCAGACAGATTGTGACTCCA+AGG 0.622843 2_1:-27236918 Msa0203430:CDS
TGAAACACCGTCATCATCGG+AGG 0.623422 2_1:-27237002 Msa0203430:CDS
ATTAGCAAAAGAAGCTGCAA+CGG 0.627501 2_1:+27237051 None:intergenic
ATCTGTCTGAACCGTCACAT+CGG 0.630252 2_1:+27236931 None:intergenic
GAACATAGAGTAACCTGACC+CGG 0.635812 2_1:+27236862 None:intergenic
AAACATAGAGTAACCTGACC+CGG 0.635812 2_1:+27239279 None:intergenic
AAACACCGTCATCATCGGAT+GGG 0.637194 2_1:-27239417 Msa0203430:CDS
CTTAATCTCAGAATGTGTCA+AGG 0.645758 2_1:+27239492 None:intergenic
ATATCGGATAGAGCAGGAGA+CGG 0.668322 2_1:+27239364 None:intergenic
GTCGTCCCATCCGATGATGA+CGG 0.676935 2_1:+27239412 None:intergenic
GATCCTCCGGACATTGCCGG+AGG 0.690140 2_1:-27239520 Msa0203430:CDS
AAATATGGTGAAATCAAACG+TGG 0.692400 2_1:-27239752 None:intergenic
ACATCGGATAGAGCAGAAGA+CGG 0.692774 2_1:+27236947 None:intergenic
AAACACCGTCATCATCGGAG+GGG 0.699371 2_1:-27237000 Msa0203430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGTAATGTTTTTAAATT+TGG - chr2_1:27237565-27237584 Msa0203430:intron 10.0%
!! GTAGATTTATTATAAATAAA+AGG - chr2_1:27237594-27237613 Msa0203430:intron 10.0%
!!! TTTAAATTTTACAAACAAAT+AGG + chr2_1:27238205-27238224 None:intergenic 10.0%
!!! AAAGAAAAATAATATTTTGT+TGG - chr2_1:27238222-27238241 Msa0203430:intron 10.0%
!! AATTTATTTATTTGTTTGAA+TGG + chr2_1:27238279-27238298 None:intergenic 10.0%
!!! ATTTTTTTCCTTAGTAATTA+AGG - chr2_1:27237492-27237511 Msa0203430:intron 15.0%
!! TGAACATGTAAAATATATAA+TGG - chr2_1:27237903-27237922 Msa0203430:intron 15.0%
!!! TTTGTTTTGTAAAAAAACAA+TGG + chr2_1:27239197-27239216 None:intergenic 15.0%
!! ATGAATCATATGAACAAAAT+TGG + chr2_1:27237520-27237539 None:intergenic 20.0%
!! GATGAATAAAAAAAGGTTTA+TGG + chr2_1:27237845-27237864 None:intergenic 20.0%
!!! ATAATTTTCAATAACGAGTA+AGG - chr2_1:27238132-27238151 Msa0203430:intron 20.0%
!! ATTTATTTGTTTGAATGGTA+AGG + chr2_1:27238274-27238293 None:intergenic 20.0%
!! TATGATACACGAAAATTATA+AGG - chr2_1:27238865-27238884 Msa0203430:intron 20.0%
!! CCTTTGATATTATGTTTATT+AGG + chr2_1:27239342-27239361 None:intergenic 20.0%
!! CCTAATAAACATAATATCAA+AGG - chr2_1:27239339-27239358 Msa0203430:CDS 20.0%
!! TCTTCTACATAATCAAAATT+TGG + chr2_1:27239702-27239721 None:intergenic 20.0%
!!! TGTTTCAAACGGATTATTTT+CGG + chr2_1:27237061-27237080 None:intergenic 25.0%
! TCTTCTACATAATCAAAATC+TGG + chr2_1:27237285-27237304 None:intergenic 25.0%
! AATTGGAACCTTAATTACTA+AGG + chr2_1:27237503-27237522 None:intergenic 25.0%
! TGAATGGACATTATATATGT+TGG + chr2_1:27237688-27237707 None:intergenic 25.0%
! AAATCTTATCCTTTACAACT+CGG + chr2_1:27237724-27237743 None:intergenic 25.0%
! TTTATGGACATTTCATATGT+TGG + chr2_1:27237829-27237848 None:intergenic 25.0%
! CAACACAGATGAATAAAAAA+AGG + chr2_1:27237852-27237871 None:intergenic 25.0%
! TTGGACATATTTACATATAC+AGG - chr2_1:27237968-27237987 Msa0203430:intron 25.0%
! TTAATCTATTCTCCACTTAA+AGG - chr2_1:27238041-27238060 Msa0203430:intron 25.0%
!!! TCTCTATTTTGTTTTACGTA+AGG + chr2_1:27238080-27238099 None:intergenic 25.0%
!!! AATTTTTGTTTGACTTGGTT+TGG - chr2_1:27238307-27238326 Msa0203430:intron 25.0%
! GGATGACGTTTAATAATATT+TGG - chr2_1:27238760-27238779 Msa0203430:intron 25.0%
! TATCATAGAACAATTACCTT+AGG + chr2_1:27238852-27238871 None:intergenic 25.0%
!! AGGTCTTTAGAAATCAATTT+AGG + chr2_1:27239012-27239031 None:intergenic 25.0%
!! ACTACTCTAAATTTAAAGTG+AGG + chr2_1:27239032-27239051 None:intergenic 25.0%
! ATAAGAGTAGAGATAAACAA+CGG - chr2_1:27239238-27239257 Msa0203430:CDS 25.0%
! CTTAATCTCATAATATGTCA+TGG + chr2_1:27239421-27239440 None:intergenic 25.0%
! TGATTATGTAGAAGAAAACA+TGG - chr2_1:27239707-27239726 Msa0203430:CDS 25.0%
AGTGATTCTTCATTGTATAG+AGG - chr2_1:27236784-27236803 Msa0203430:CDS 30.0%
AAGAACCTAACCATATTCTT+TGG + chr2_1:27236867-27236886 None:intergenic 30.0%
! TAATTTTCCTAATGATCCTC+CGG - chr2_1:27236960-27236979 Msa0203430:CDS 30.0%
!!! GTTTCAAACGGATTATTTTC+GGG + chr2_1:27237060-27237079 None:intergenic 30.0%
!!! CAAGATAAACGGGTTATTTT+CGG - chr2_1:27237176-27237195 Msa0203430:intron 30.0%
TGATTATGTAGAAGAGAACA+TGG - chr2_1:27237290-27237309 Msa0203430:intron 30.0%
! GAAATGATATTCAAGTTCGT+CGG - chr2_1:27237354-27237373 Msa0203430:intron 30.0%
! AAATGATATTCAAGTTCGTC+GGG - chr2_1:27237355-27237374 Msa0203430:intron 30.0%
!!! CGGATGATAAAAGTTTTGAA+TGG + chr2_1:27237704-27237723 None:intergenic 30.0%
! TTTTATCATCCGAGTTGTAA+AGG - chr2_1:27237712-27237731 Msa0203430:intron 30.0%
GCGAAATTCACATATTATAG+AGG - chr2_1:27237781-27237800 Msa0203430:intron 30.0%
ATAATGGTCCACTATTGAAA+TGG - chr2_1:27237919-27237938 Msa0203430:intron 30.0%
ATTGAAATGGACATTGTGTT+TGG - chr2_1:27237932-27237951 Msa0203430:intron 30.0%
!!! ATTTTGTTTTACGTAAGGTG+AGG + chr2_1:27238075-27238094 None:intergenic 30.0%
!! CTGCTAATTTTTGTTTGACT+TGG - chr2_1:27238302-27238321 Msa0203430:intron 30.0%
ACTATAGTACCAAATTAGCA+GGG + chr2_1:27238363-27238382 None:intergenic 30.0%
!!! TTTGACCTATGTTGGTTTTT+GGG - chr2_1:27238426-27238445 Msa0203430:intron 30.0%
!!! TTTACAGTGCTTGCTTTTTT+TGG - chr2_1:27238611-27238630 Msa0203430:intron 30.0%
!!! CTTTTTTTGGAGTCTGTTTT+AGG - chr2_1:27238624-27238643 Msa0203430:intron 30.0%
! CAAAAAGTTTTTGTGCTAGA+AGG - chr2_1:27238818-27238837 Msa0203430:intron 30.0%
GATACACGAAAATTATAAGG+AGG - chr2_1:27238868-27238887 Msa0203430:intron 30.0%
!!! TGTTTCAACAGGAGTATTTT+CGG + chr2_1:27239478-27239497 None:intergenic 30.0%
!! CAAGGAAAACAGGTTATTTT+CGG - chr2_1:27239593-27239612 Msa0203430:CDS 30.0%
TAATCAAAATTTGGCATCTC+CGG + chr2_1:27239693-27239712 None:intergenic 30.0%
TATGTAGAAGAAAACATGGA+TGG - chr2_1:27239711-27239730 Msa0203430:CDS 30.0%
CTTCATTGTATAGAGGAGTA+AGG - chr2_1:27236791-27236810 Msa0203430:CDS 35.0%
AACCTAACCATATTCTTTGG+CGG + chr2_1:27236864-27236883 None:intergenic 35.0%
CTTAATCTCAGAATGTGTCA+AGG + chr2_1:27237004-27237023 None:intergenic 35.0%
ATCTGTCTGAAGAGTCATAT+CGG + chr2_1:27237148-27237167 None:intergenic 35.0%
GATTGTGACTCCAAGATAAA+CGG - chr2_1:27237165-27237184 Msa0203430:intron 35.0%
ATTGTGACTCCAAGATAAAC+GGG - chr2_1:27237166-27237185 Msa0203430:intron 35.0%
CGAAAATAACCCGTTTATCT+TGG + chr2_1:27237178-27237197 None:intergenic 35.0%
CCACAAAAATCATCAAAACC+CGG + chr2_1:27237240-27237259 None:intergenic 35.0%
TAATCAAAATCTGGCATCTC+CGG + chr2_1:27237276-27237295 None:intergenic 35.0%
TATGTAGAAGAGAACATGGA+TGG - chr2_1:27237294-27237313 Msa0203430:intron 35.0%
ATGTAGAAGAGAACATGGAT+GGG - chr2_1:27237295-27237314 Msa0203430:intron 35.0%
CTTAGAAATTCCACAAGAAC+AGG + chr2_1:27237335-27237354 None:intergenic 35.0%
GATCAGTACTAAATTGACAG+TGG + chr2_1:27237468-27237487 None:intergenic 35.0%
ACATTATATATGTTGGAGCG+TGG + chr2_1:27237681-27237700 None:intergenic 35.0%
ATGGACATTTCATATGTTGG+AGG + chr2_1:27237826-27237845 None:intergenic 35.0%
CACAATGTCCATTTCAATAG+TGG + chr2_1:27237930-27237949 None:intergenic 35.0%
TACAGGCATGTCAAGATATA+TGG - chr2_1:27237985-27238004 Msa0203430:intron 35.0%
! TTTTGTTGGTGTGCCTATAA+CGG - chr2_1:27238236-27238255 Msa0203430:intron 35.0%
GACTATAGTACCAAATTAGC+AGG + chr2_1:27238364-27238383 None:intergenic 35.0%
GCTAATTTGGTACTATAGTC+TGG - chr2_1:27238364-27238383 Msa0203430:intron 35.0%
ATTTGGTACTATAGTCTGGT+TGG - chr2_1:27238368-27238387 Msa0203430:intron 35.0%
GATCTCGAATCAAAAGTGAT+CGG + chr2_1:27238394-27238413 None:intergenic 35.0%
!! GATCACTTTTGATTCGAGAT+CGG - chr2_1:27238393-27238412 Msa0203430:intron 35.0%
!! ATCACTTTTGATTCGAGATC+GGG - chr2_1:27238394-27238413 Msa0203430:intron 35.0%
!!! CTTTGACCTATGTTGGTTTT+TGG - chr2_1:27238425-27238444 Msa0203430:intron 35.0%
!!! TGCTTGGGAGTTTTATTTTG+AGG - chr2_1:27238540-27238559 Msa0203430:intron 35.0%
!!! GCTTGGGAGTTTTATTTTGA+GGG - chr2_1:27238541-27238560 Msa0203430:intron 35.0%
! AAAAGCAAGCACTGTAAACA+CGG + chr2_1:27238609-27238628 None:intergenic 35.0%
!!! TTTTTGGAGTCTGTTTTAGG+CGG - chr2_1:27238627-27238646 Msa0203430:intron 35.0%
! TTTTGGTAGGTTTATCTCCA+GGG - chr2_1:27238657-27238676 Msa0203430:intron 35.0%
!!! TTTATCTCCAGGGGTTTTTT+AGG - chr2_1:27238667-27238686 Msa0203430:intron 35.0%
TGGACGAAACAAGATACAAA+TGG + chr2_1:27238723-27238742 None:intergenic 35.0%
ATTAGCAAAAGAAGCTGCAA+CGG + chr2_1:27239445-27239464 None:intergenic 35.0%
! TGCAGCTTCTTTTGCTAATT+CGG - chr2_1:27237029-27237048 Msa0203430:CDS 35.0%
!!! GTTTCAACAGGAGTATTTTC+GGG + chr2_1:27239477-27239496 None:intergenic 35.0%
! CGAAAATAACCTGTTTTCCT+TGG + chr2_1:27239595-27239614 None:intergenic 35.0%
CACAAAAATCATCAAAACCC+GGG + chr2_1:27237239-27237258 None:intergenic 35.0%
CCACAAAAATCATCAAAACC+CGG + chr2_1:27237240-27237259 None:intergenic 35.0%
AGAAGAAAACATGGATGGAT+TGG - chr2_1:27239716-27239735 Msa0203430:CDS 35.0%
TAATTCCAGACCTGTTCTTA+TGG - chr2_1:27239739-27239758 Msa0203430:CDS 35.0%
AAATTCCATAAGAACAGGTC+TGG + chr2_1:27239747-27239766 None:intergenic 35.0%
AAACGTGGAAAAAACTGCTG+CGG - chr2_1:27236756-27236775 Msa0203430:CDS 40.0%
TGTATAGAGGAGTAAGGAAG+AGG - chr2_1:27236797-27236816 Msa0203430:CDS 40.0%
! GCAGCTTCTTTTGCTAATTC+AGG - chr2_1:27237030-27237049 Msa0203430:CDS 40.0%
!! GATGATGACGGTGTTTCAAA+CGG + chr2_1:27237072-27237091 None:intergenic 40.0%
! GTTTGAAACACCGTCATCAT+CGG - chr2_1:27237071-27237090 Msa0203430:intron 40.0%
GACAACAACATTGGAGTCTA+TGG - chr2_1:27237101-27237120 Msa0203430:intron 40.0%
! TCGGACATGTTTTCAGAAAC+CGG - chr2_1:27237195-27237214 Msa0203430:intron 40.0%
AAACATAGAGTAACCTGACC+CGG + chr2_1:27237217-27237236 None:intergenic 40.0%
GTCAGGTTACTCTATGTTTC+CGG - chr2_1:27237218-27237237 Msa0203430:intron 40.0%
TCAGGTTACTCTATGTTTCC+GGG - chr2_1:27237219-27237238 Msa0203430:intron 40.0%
!! CCGGGTTTTGATGATTTTTG+TGG - chr2_1:27237237-27237256 Msa0203430:intron 40.0%
TAATTCCAGACCTGTTCTTG+TGG - chr2_1:27237322-27237341 Msa0203430:intron 40.0%
AAATTCCACAAGAACAGGTC+TGG + chr2_1:27237330-27237349 None:intergenic 40.0%
! TATTCAAGTTCGTCGGGTTA+CGG - chr2_1:27237361-27237380 Msa0203430:intron 40.0%
GGACTAACTCCAGTAAGAAT+TGG + chr2_1:27237447-27237466 None:intergenic 40.0%
GACATTGTGTTTGGAGACAA+CGG - chr2_1:27237941-27237960 Msa0203430:intron 40.0%
GTTTGGAGACAACGGAATAT+TGG - chr2_1:27237949-27237968 Msa0203430:intron 40.0%
GAGGTGATTCAACCTTTAAG+TGG + chr2_1:27238056-27238075 None:intergenic 40.0%
CAAATGAAAACCGTTCTGCT+AGG - chr2_1:27238100-27238119 Msa0203430:intron 40.0%
TTAAGCCAATCCTAGCAGAA+CGG + chr2_1:27238113-27238132 None:intergenic 40.0%
GTCAGTTCTTTGACCTATGT+TGG - chr2_1:27238418-27238437 Msa0203430:intron 40.0%
CATAGCCCAAAAACCAACAT+AGG + chr2_1:27238434-27238453 None:intergenic 40.0%
!!! TATTTTGAGGGTGTTCTTCG+TGG - chr2_1:27238553-27238572 Msa0203430:intron 40.0%
!!! ATTTTGAGGGTGTTCTTCGT+GGG - chr2_1:27238554-27238573 Msa0203430:intron 40.0%
! TTTTAGGCGGTGATGTGTTT+TGG - chr2_1:27238640-27238659 Msa0203430:intron 40.0%
!! GTTTTGGTAGGTTTATCTCC+AGG - chr2_1:27238656-27238675 Msa0203430:intron 40.0%
TTTGGTAGGTTTATCTCCAG+GGG - chr2_1:27238658-27238677 Msa0203430:intron 40.0%
TTAACCACCTAAAAAACCCC+TGG + chr2_1:27238677-27238696 None:intergenic 40.0%
!!! GGGGTTTTTTAGGTGGTTAA+TGG - chr2_1:27238677-27238696 Msa0203430:intron 40.0%
AATGGTGTACCGTCTATATG+CGG - chr2_1:27238695-27238714 Msa0203430:intron 40.0%
AGTTGCTCATAGTTTAGCCA+TGG + chr2_1:27239305-27239324 None:intergenic 40.0%
! GCAGCTTCTTTTGCTAATTC+GGG - chr2_1:27237030-27237049 Msa0203430:CDS 40.0%
TGTTGAAACACCGTCATCAT+CGG - chr2_1:27239488-27239507 Msa0203430:CDS 40.0%
GGCAACAACATTGTTGTCTA+TGG - chr2_1:27239518-27239537 Msa0203430:CDS 40.0%
ATTGTGACTCCAAGGAAAAC+AGG - chr2_1:27239583-27239602 Msa0203430:CDS 40.0%
! TCGGACATGTTTTCAGAAAC+CGG - chr2_1:27237195-27237214 Msa0203430:intron 40.0%
!! CCGGGTTTTGATGATTTTTG+TGG - chr2_1:27237237-27237256 Msa0203430:intron 40.0%
AGGAGTAAGGAAGAGGAAGT+GGG - chr2_1:27236804-27236823 Msa0203430:CDS 45.0%
CATATTCTTTGGCGGCTGTT+TGG + chr2_1:27236856-27236875 None:intergenic 45.0%
CAAACAGCCGCCAAAGAATA+TGG - chr2_1:27236854-27236873 Msa0203430:CDS 45.0%
AGCCGCCAAAGAATATGGTT+AGG - chr2_1:27236859-27236878 Msa0203430:CDS 45.0%
TTCTTATGACTCAGCCGTGA+AGG - chr2_1:27236882-27236901 Msa0203430:CDS 45.0%
! GCTGCTATGTTTTGCTTACG+TGG - chr2_1:27236922-27236941 Msa0203430:CDS 45.0%
! ATGTTTTGCTTACGTGGCAG+TGG - chr2_1:27236928-27236947 Msa0203430:CDS 45.0%
AAACACCGTCATCATCGGAT+GGG - chr2_1:27237076-27237095 Msa0203430:intron 45.0%
ATATCGGATAGAGCAGGAGA+CGG + chr2_1:27237132-27237151 None:intergenic 45.0%
AGAGTCATATCGGATAGAGC+AGG + chr2_1:27237138-27237157 None:intergenic 45.0%
! CGGACATGTTTTCAGAAACC+GGG - chr2_1:27237196-27237215 Msa0203430:intron 45.0%
! ATGTTTTCAGAAACCGGGTC+AGG - chr2_1:27237201-27237220 Msa0203430:intron 45.0%
AGAAGAGAACATGGATGGGT+TGG - chr2_1:27237299-27237318 Msa0203430:intron 45.0%
!! CTAGGAGTGCCAATTCTTAC+TGG - chr2_1:27237435-27237454 Msa0203430:intron 45.0%
GAAAACCGTTCTGCTAGGAT+TGG - chr2_1:27238105-27238124 Msa0203430:intron 45.0%
GCTATCAAAGCCTCCGTTAT+AGG + chr2_1:27238252-27238271 None:intergenic 45.0%
!! TGACTTGGTTTGGTTTCCTC+TGG - chr2_1:27238317-27238336 Msa0203430:intron 45.0%
! TTTGGTTTCCTCTGGTGTAC+CGG - chr2_1:27238325-27238344 Msa0203430:intron 45.0%
GGCTATGTGTTGTGCTCTTT+CGG - chr2_1:27238447-27238466 Msa0203430:intron 45.0%
TATGTGTTGTGCTCTTTCGG+TGG - chr2_1:27238450-27238469 Msa0203430:intron 45.0%
GTGATAGCTGCATGATCCTT+CGG - chr2_1:27238492-27238511 Msa0203430:intron 45.0%
GTTAGGTGCTCTTCGATATG+TGG - chr2_1:27238514-27238533 Msa0203430:intron 45.0%
! TTCGATATGTGGCTCTGCTT+GGG - chr2_1:27238525-27238544 Msa0203430:intron 45.0%
!!! ATCTCCAGGGGTTTTTTAGG+TGG - chr2_1:27238670-27238689 Msa0203430:intron 45.0%
!! CAAATGGTGCCGCATATAGA+CGG + chr2_1:27238707-27238726 None:intergenic 45.0%
AGCATGACATAGAGCTACCA+TGG - chr2_1:27239285-27239304 Msa0203430:CDS 45.0%
GCAATGTACGGAGGATCATT+TGG + chr2_1:27239387-27239406 None:intergenic 45.0%
AATGATCCTCCGTACATTGC+CGG - chr2_1:27239387-27239406 Msa0203430:CDS 45.0%
ATATGTCATGGACCTTCCTC+CGG + chr2_1:27239409-27239428 None:intergenic 45.0%
!! GATGATGACGGTGTTTCAAC+AGG + chr2_1:27239489-27239508 None:intergenic 45.0%
ACATCGGATAGAGCAGAAGA+CGG + chr2_1:27239549-27239568 None:intergenic 45.0%
TTCTGCTCTATCCGATGTGA+CGG - chr2_1:27239551-27239570 Msa0203430:CDS 45.0%
ATCTGTCTGAACCGTCACAT+CGG + chr2_1:27239565-27239584 None:intergenic 45.0%
TCAGACAGATTGTGACTCCA+AGG - chr2_1:27237158-27237177 Msa0203430:intron 45.0%
! CGGACATGTTTTCAGAAACC+GGG - chr2_1:27237196-27237215 Msa0203430:intron 45.0%
! ATGTTTTCAGAAACCGGGTC+AGG - chr2_1:27237201-27237220 Msa0203430:intron 45.0%
GAACATAGAGTAACCTGACC+CGG + chr2_1:27239634-27239653 None:intergenic 45.0%
GTCAGGTTACTCTATGTTCC+CGG - chr2_1:27239635-27239654 Msa0203430:CDS 45.0%
TCAGGTTACTCTATGTTCCC+GGG - chr2_1:27239636-27239655 Msa0203430:CDS 45.0%
GAGGAGTAAGGAAGAGGAAG+TGG - chr2_1:27236803-27236822 Msa0203430:CDS 50.0%
GGAGTAAGGAAGAGGAAGTG+GGG - chr2_1:27236805-27236824 Msa0203430:CDS 50.0%
AAATGCACGTGCTGCCTTCA+CGG + chr2_1:27236899-27236918 None:intergenic 50.0%
GCAATGTCCGGAGGATCATT+AGG + chr2_1:27236970-27236989 None:intergenic 50.0%
AATGATCCTCCGGACATTGC+CGG - chr2_1:27236970-27236989 Msa0203430:CDS 50.0%
ATGTGTCAAGGACCTTCCTC+CGG + chr2_1:27236992-27237011 None:intergenic 50.0%
GAAACACCGTCATCATCGGA+TGG - chr2_1:27237075-27237094 Msa0203430:intron 50.0%
GGATGGGACGACAACAACAT+TGG - chr2_1:27237092-27237111 Msa0203430:intron 50.0%
TTGTGGCGATTTCTACGTGC+CGG - chr2_1:27237254-27237273 Msa0203430:intron 50.0%
TCCTAGATCCAATGTGGACC+CGG + chr2_1:27237421-27237440 None:intergenic 50.0%
TGGCACTCCTAGATCCAATG+TGG + chr2_1:27237427-27237446 None:intergenic 50.0%
TGTTGGTGTGCCTATAACGG+AGG - chr2_1:27238239-27238258 Msa0203430:intron 50.0%
TTGGTTTCCTCTGGTGTACC+GGG - chr2_1:27238326-27238345 Msa0203430:intron 50.0%
GTTGTGCTCTTTCGGTGGAT+CGG - chr2_1:27238455-27238474 Msa0203430:intron 50.0%
AGCTGCATGATCCTTCGGTT+AGG - chr2_1:27238497-27238516 Msa0203430:intron 50.0%
!! ATCGAAGAGCACCTAACCGA+AGG + chr2_1:27238511-27238530 None:intergenic 50.0%
! CTTCGATATGTGGCTCTGCT+TGG - chr2_1:27238524-27238543 Msa0203430:intron 50.0%
!!! AGGCGGTGATGTGTTTTGGT+AGG - chr2_1:27238644-27238663 Msa0203430:intron 50.0%
CGTCCATACCTTGCGTCTTA+CGG - chr2_1:27238737-27238756 Msa0203430:intron 50.0%
GTCCATACCTTGCGTCTTAC+GGG - chr2_1:27238738-27238757 Msa0203430:intron 50.0%
TCCATACCTTGCGTCTTACG+GGG - chr2_1:27238739-27238758 Msa0203430:intron 50.0%
!! CTAGAAGGCAGAAGCACCTA+AGG - chr2_1:27238833-27238852 Msa0203430:intron 50.0%
TGAAACACCGTCATCATCGG+AGG - chr2_1:27237074-27237093 Msa0203430:intron 50.0%
GAAACACCGTCATCATCGGA+GGG - chr2_1:27237075-27237094 Msa0203430:intron 50.0%
AAACACCGTCATCATCGGAG+GGG - chr2_1:27239493-27239512 Msa0203430:CDS 50.0%
TTGTGGCGATTTCTACGTGC+CGG - chr2_1:27237254-27237273 Msa0203430:intron 50.0%
GTCGTCCCATCCGATGATGA+CGG + chr2_1:27237084-27237103 None:intergenic 55.0%
CCGGGTTCTTGTCACGGTTT+CGG + chr2_1:27237402-27237421 None:intergenic 55.0%
CCGAAACCGTGACAAGAACC+CGG - chr2_1:27237399-27237418 Msa0203430:intron 55.0%
CGAAACCGTGACAAGAACCC+GGG - chr2_1:27237400-27237419 Msa0203430:intron 55.0%
ACAAGAACCCGGGTCCACAT+TGG - chr2_1:27237410-27237429 Msa0203430:intron 55.0%
CCTAGATCCAATGTGGACCC+GGG + chr2_1:27237420-27237439 None:intergenic 55.0%
TGGTTTCCTCTGGTGTACCG+GGG - chr2_1:27238327-27238346 Msa0203430:intron 55.0%
TCGTGGGTGAGTAGTGACGA+TGG - chr2_1:27238570-27238589 Msa0203430:intron 55.0%
CGTGGGTGAGTAGTGACGAT+GGG - chr2_1:27238571-27238590 Msa0203430:intron 55.0%
TCCCCGTAAGACGCAAGGTA+TGG + chr2_1:27238743-27238762 None:intergenic 55.0%
GACCTTCCTCCGGCAATGTA+CGG + chr2_1:27239399-27239418 None:intergenic 55.0%
GACCTTCCTCCGGCAATGTC+CGG + chr2_1:27236982-27237001 None:intergenic 60.0%
GTGGACCCGGGTTCTTGTCA+CGG + chr2_1:27237408-27237427 None:intergenic 60.0%
CCCGGGTCCACATTGGATCT+AGG - chr2_1:27237417-27237436 Msa0203430:intron 60.0%
GGTTTCCTCTGGTGTACCGG+GGG - chr2_1:27238328-27238347 Msa0203430:intron 60.0%
!! CGAGGGGTGCCCTGCTAATT+TGG - chr2_1:27238351-27238370 Msa0203430:intron 60.0%
GTGCTCTTTCGGTGGATCGG+AGG - chr2_1:27238458-27238477 Msa0203430:intron 60.0%
GGGTGAGTAGTGACGATGGG+CGG - chr2_1:27238574-27238593 Msa0203430:intron 60.0%
TGAGTAGTGACGATGGGCGG+TGG - chr2_1:27238577-27238596 Msa0203430:intron 60.0%
CGTCATCCCCGTAAGACGCA+AGG + chr2_1:27238748-27238767 None:intergenic 60.0%
GATCCTCCGTACATTGCCGG+AGG - chr2_1:27239390-27239409 Msa0203430:CDS 60.0%
CTTCCTCCGGCAATGTACGG+AGG + chr2_1:27239396-27239415 None:intergenic 60.0%
CTCCGTACATTGCCGGAGGA+AGG - chr2_1:27239394-27239413 Msa0203430:CDS 60.0%
ACCGTCATCATCGGAGGGGA+CGG - chr2_1:27239497-27239516 Msa0203430:CDS 60.0%
GATCCTCCGGACATTGCCGG+AGG - chr2_1:27236973-27236992 Msa0203430:CDS 65.0%
CTTCCTCCGGCAATGTCCGG+AGG + chr2_1:27236979-27236998 None:intergenic 65.0%
CTCCGGACATTGCCGGAGGA+AGG - chr2_1:27236977-27236996 Msa0203430:CDS 65.0%
TCGGTGGATCGGAGGTCGTG+AGG - chr2_1:27238466-27238485 Msa0203430:intron 65.0%
GTAGTGACGATGGGCGGTGG+TGG - chr2_1:27238580-27238599 Msa0203430:intron 65.0%
GCCGTCCCCTCCGATGATGA+CGG + chr2_1:27239501-27239520 None:intergenic 65.0%
CTCTGGTGTACCGGGGGCGA+GGG - chr2_1:27238334-27238353 Msa0203430:intron 70.0%
TCTGGTGTACCGGGGGCGAG+GGG - chr2_1:27238335-27238354 Msa0203430:intron 70.0%
CCTCGCCCCCGGTACACCAG+AGG + chr2_1:27238336-27238355 None:intergenic 75.0%
CCTCTGGTGTACCGGGGGCG+AGG - chr2_1:27238333-27238352 Msa0203430:intron 75.0%
!! AGCAGGGCACCCCTCGCCCC+CGG + chr2_1:27238347-27238366 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 27236745 27239770 27236745 ID=Msa0203430;Name=Msa0203430
chr2_1 mRNA 27236745 27239770 27236745 ID=Msa0203430-mRNA-1;Parent=Msa0203430;Name=Msa0203430-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|2|0|301
chr2_1 exon 27239195 27239770 27239195 ID=Msa0203430-mRNA-1:exon:10099;Parent=Msa0203430-mRNA-1
chr2_1 exon 27236745 27237074 27236745 ID=Msa0203430-mRNA-1:exon:10098;Parent=Msa0203430-mRNA-1
chr2_1 CDS 27239195 27239770 27239195 ID=Msa0203430-mRNA-1:cds;Parent=Msa0203430-mRNA-1
chr2_1 CDS 27236745 27237074 27236745 ID=Msa0203430-mRNA-1:cds;Parent=Msa0203430-mRNA-1
Gene Sequence

>Msa0203430

ATGGTGAAATCAAACGTGGAAAAAACTGCTGCGGAACGAAGTGATTCTTCATTGTATAGAGGAGTAAGGAAGAGGAAGTGGGGAAAATATGTGTCTGAAATCAGACTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCTTATGACTCAGCCGTGAAGGCAGCACGTGCATTTGACGCTGCTATGTTTTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTTCCTAATGATCCTCCGGACATTGCCGGAGGAAGGTCCTTGACACATTCTGAGATTAAGACTGCTGCAGCTTCTTTTGCTAATTCAGGTCAACCCGAAAATAATCCGTTTGAAACACCGTCATCATCGGATGGGACGACAACAACATTGGAGTCTATGGAGTTGCCGTCTCCTGCTCTATCCGATATGACTCTTCAGACAGATTGTGACTCCAAGATAAACGGGTTATTTTCGGACATGTTTTCAGAAACCGGGTCAGGTTACTCTATGTTTCCGGGTTTTGATGATTTTTGTGGCGATTTCTACGTGCCGGAGATGCCAGATTTTGATTATGTAGAAGAGAACATGGATGGGTTGACCGTTGCAGCTTCTTTTGCTAATTCGGGTCAACCCGAAAATACTCCTGTTGAAACACCGTCATCATCGGAGGGGACGGCAACAACATTGTTGTCTATGGAGTTGCCGTCTTCTGCTCTATCCGATGTGACGGTTCAGACAGATTGTGACTCCAAGGAAAACAGGTTATTTTCGGACATGTTTTCAGAAACCGGGTCAGGTTACTCTATGTTCCCGGGTTTTGATGATTTTTGTGGCGATTTCTACGTGCCGGAGATGCCAAATTTTGATTATGTAGAAGAAAACATGGATGGATTGGTAATTCCAGACCTGTTCTTATGGAATTTCTAA
Protein sequence

>Msa0203430

MVKSNVEKTAAERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAVKAARAFDAAMFCLRGSGAKFNFPNDPPDIAGGRSLTHSEIKTAAASFANSGQPENNPFETPSSSDGTTTTLESMELPSPALSDMTLQTDCDSKINGLFSDMFSETGSGYSMFPGFDDFCGDFYVPEMPDFDYVEENMDGLTVAASFANSGQPENTPVETPSSSEGTATTLLSMELPSSALSDVTVQTDCDSKENRLFSDMFSETGSGYSMFPGFDDFCGDFYVPEMPNFDYVEENMDGLVIPDLFLWNF*