AlfalfaGEDB | Msa0204240

M. sativa cultivar zhongmu-4 / Msa0204240

KEGG: K07198
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204240	XP_039686455.1	74.449	454	34	4	1	376	1	450	0.0	643

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204240	sp\|Q9LGV5\|CIPK1_ORYSJ	45.786	439	150	7	17	375	16	446	2.30e-120	359

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204240	G7IQG8	72.068	469	34	5	1	376	1	465	0.0	634

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0204240	Msa0285910	0.810662	1.031079e-50	-8.615850e-47
Msa0204240	Msa0324880	0.842747	2.141145e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204240	MtrunA17_Chr2g0302431	72.068	469	34	5	1	376	1	465	0.0	634
Msa0204240	MtrunA17_Chr4g0069301	73.134	268	52	2	110	362	179	441	4.19e-136	395
Msa0204240	MtrunA17_Chr4g0069301	68.966	116	30	1	1	110	1	116	3.22e-36	137
Msa0204240	MtrunA17_Chr5g0428031	37.857	420	184	5	16	360	5	422	4.84e-102	308
Msa0204240	MtrunA17_Chr3g0107011	37.470	419	180	8	15	354	9	424	2.23e-87	271
Msa0204240	MtrunA17_Chr5g0432471	35.160	438	179	7	15	352	7	439	2.70e-85	266
Msa0204240	MtrunA17_Chr5g0441011	48.077	260	123	3	111	360	167	424	3.16e-79	250
Msa0204240	MtrunA17_Chr5g0441011	57.547	106	42	1	16	121	9	111	1.39e-33	129
Msa0204240	MtrunA17_Chr3g0114511	36.207	406	193	8	11	354	24	425	4.50e-77	244
Msa0204240	MtrunA17_Chr2g0304111	45.660	265	127	4	111	360	177	439	8.22e-76	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0204240	AT3G17510.2	66.667	264	76	2	111	363	94	356	1.11e-115	341
Msa0204240	AT3G17510.1	67.424	264	74	2	111	363	174	436	1.05e-114	341
Msa0204240	AT1G48260.2	64.341	258	85	2	111	361	80	337	9.47e-114	335
Msa0204240	AT1G48260.4	64.341	258	85	2	111	361	80	337	9.47e-114	335
Msa0204240	AT1G48260.3	64.341	258	85	2	111	361	80	337	9.47e-114	335
Msa0204240	AT1G48260.5	64.341	258	85	2	111	361	80	337	9.47e-114	335
Msa0204240	AT1G48260.1	64.341	258	85	2	111	361	165	422	4.23e-113	337
Msa0204240	AT1G48260.1	65.741	108	36	1	13	119	4	111	1.18e-34	132
Msa0204240	AT5G35410.1	38.322	441	190	9	13	374	4	441	3.83e-99	301
Msa0204240	AT4G24400.1	37.825	423	183	6	14	358	3	423	8.35e-96	293

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Find 116 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTATCGAACGACTT+GGG	0.625083	2_1:+29179252	Msa0204240:CDS
AAACGAATCGGCTATAAATA+AGG	0.302014	2_1:-29172961	None:intergenic
AAATCGGATATTTGGTCATG+CGG	0.649847	2_1:+29177815	Msa0204240:CDS
AAATGATTATTAATAGGATT+AGG	0.392727	2_1:-29172897	None:intergenic
AACATAATTTGGACTTCCAC+AGG	0.505590	2_1:-29177753	None:intergenic
AACCAAGCAAGAAGGATTGA+AGG	0.486624	2_1:+29173207	Msa0204240:CDS
AACTCTAGGATGTCTCGGAG+AGG	0.692156	2_1:+29178702	Msa0204240:intron
AAGAAAGCAAAGAAAAGTGT+TGG	0.471949	2_1:+29172829	Msa0204240:five_prime_UTR
AAGCCTAGGTAGCCTCTCGG+TGG	0.715690	2_1:+29178949	Msa0204240:CDS
AAGGAAAAGTAGTGCAATTA+GGG	0.362891	2_1:+29173226	Msa0204240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAGATACAAACAAAACAA+AGG	+	chr2_1:29172793-29172812	Msa0204240:five_prime_UTR	30.0%
AATAGGATTAGGAATAGGAA+TGG	-	chr2_1:29172889-29172908	None:intergenic	30.0%
AAACGAATCGGCTATAAATA+AGG	-	chr2_1:29172964-29172983	None:intergenic	30.0%
GTAGTAATTGTGAGTTAAGA+GGG	-	chr2_1:29173031-29173050	None:intergenic	30.0%
TGTAGTAATTGTGAGTTAAG+AGG	-	chr2_1:29173032-29173051	None:intergenic	30.0%
TCTATGCAATGCTTGATTTA+TGG	-	chr2_1:29173075-29173094	None:intergenic	30.0%
AAGGAAAAGTAGTGCAATTA+GGG	+	chr2_1:29173226-29173245	Msa0204240:CDS	30.0%
CAATTAGGGAAATACGAATT+GGG	+	chr2_1:29173240-29173259	Msa0204240:CDS	30.0%
TTCCAGTATAAAATAACAGG+TGG	+	chr2_1:29173815-29173834	Msa0204240:intron	30.0%
GGATTCATTGTGTATCAAAA+CGG	-	chr2_1:29173902-29173921	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	29172789	29179701	29172789	ID=Msa0204240;Name=Msa0204240
chr2_1	mRNA	29172789	29179701	29172789	ID=Msa0204240-mRNA-1;Parent=Msa0204240;Name=Msa0204240-mRNA-1;_AED=0.20;_eAED=0.20;_QI=406\|0.77\|0.9\|1\|1\|1\|10\|378\|376
chr2_1	exon	29172789	29173386	29172789	ID=Msa0204240-mRNA-1:exon:10492;Parent=Msa0204240-mRNA-1
chr2_1	exon	29173601	29173663	29173601	ID=Msa0204240-mRNA-1:exon:10493;Parent=Msa0204240-mRNA-1
chr2_1	exon	29176632	29176703	29176632	ID=Msa0204240-mRNA-1:exon:10494;Parent=Msa0204240-mRNA-1
chr2_1	exon	29177731	29177910	29177731	ID=Msa0204240-mRNA-1:exon:10495;Parent=Msa0204240-mRNA-1
chr2_1	exon	29178008	29178193	29178008	ID=Msa0204240-mRNA-1:exon:10496;Parent=Msa0204240-mRNA-1
chr2_1	exon	29178449	29178553	29178449	ID=Msa0204240-mRNA-1:exon:10497;Parent=Msa0204240-mRNA-1
chr2_1	exon	29178710	29178826	29178710	ID=Msa0204240-mRNA-1:exon:10498;Parent=Msa0204240-mRNA-1
chr2_1	exon	29178917	29178979	29178917	ID=Msa0204240-mRNA-1:exon:10499;Parent=Msa0204240-mRNA-1
chr2_1	exon	29179084	29179158	29179084	ID=Msa0204240-mRNA-1:exon:10500;Parent=Msa0204240-mRNA-1
chr2_1	exon	29179246	29179701	29179246	ID=Msa0204240-mRNA-1:exon:10501;Parent=Msa0204240-mRNA-1
chr2_1	five_prime_UTR	29172789	29173194	29172789	ID=Msa0204240-mRNA-1:five_prime_utr;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29173195	29173386	29173195	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29173601	29173663	29173601	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29176632	29176703	29176632	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29177731	29177910	29177731	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29178008	29178193	29178008	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29178449	29178553	29178449	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29178710	29178826	29178710	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29178917	29178979	29178917	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29179084	29179158	29179084	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	CDS	29179246	29179323	29179246	ID=Msa0204240-mRNA-1:cds;Parent=Msa0204240-mRNA-1
chr2_1	three_prime_UTR	29179324	29179701	29179324	ID=Msa0204240-mRNA-1:three_prime_utr;Parent=Msa0204240-mRNA-1

Gene Sequence

>Msa0204240

ATGGTGATCATAAACCAAGCAAGAAGGATTGAAGGAAAAGTAGTGCAATTAGGGAAATACGAATTGGGAAAAACACTTGGTGAAGGAAATTTTGGAAAAGTGAAATTGGCTAGAGATACTGATTGTGGAAATTATTTTGCTGTTAAGATTCTTGAAAAGAATAAGATTGTTGATCTTAACAACACTGATCAGATAAAGAGGGAGATATCAACTTTGAAGCTTCTGAAACATCCTAATGTTGTTAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTATATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCAGATGGGTTGCTGCATACAACCTGTGGAAGTCCAAATTATGTTGCTCCCGAGATTCTTGCCAATAGAGGCTATGATGGCGCGAAATCGGATATTTGGTCATGCGGTGTTATCTTATATGTAATTCTAACAGGATACCTTCCTTTTGATGACAGAAATCTTGCAGTTCTCTATCAAAAGATTTTTAAAGCAGATGTTCAGATACCAAGATGGCTGTCACCTGGTGCACAAAACATTATAAAGAAAATTCTTGATCCCAATCCTAAAACCCGAGTAACGATGGATATGATCAAAGAAGATGAATGGTTTAAGGAGGGTTATAATCCTGCAAATCTAGAGGATGAGGAAGAAGAAGAGGAAGAGGATTCCCTTGAAGGAGACCAGAGTCCAAAATCACCAGCACTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCCGGATTTTTTGAGCAAGAGGATGTCTCGGAGAGGAAGATAAGATTTACGTCAAACCATTCACCAAAAGATTTGACTGAGAAGATCGAGGACATTGTAATCGAAATGGGATATAGAGTTCAGAAGAAAAATGGAAAATTGAAAGTGATACAAGAGGATAAAGCTCATAAAAGCCTAGGTAGCCTCTCGGTGGCAGCAGAGGTTTTTGAAGTTGGTCCATCTTTGTATGTAGTAGAACTAAGGAAGTCTTATGGAGATGCTTCTGTATATAGACAATTATGCAAAAGGTTATCGAACGACTTGGGTATAGCCGAGGCGGCAGGGCTAGTAAGCTCAGAAAGCCTAGACATATGA

Protein sequence

>Msa0204240

MVIINQARRIEGKVVQLGKYELGKTLGEGNFGKVKLARDTDCGNYFAVKILEKNKIVDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIADGLLHTTCGSPNYVAPEILANRGYDGAKSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKADVQIPRWLSPGAQNIIKKILDPNPKTRVTMDMIKEDEWFKEGYNPANLEDEEEEEEEDSLEGDQSPKSPALINAFQLIGMSSCLDLSGFFEQEDVSERKIRFTSNHSPKDLTEKIEDIVIEMGYRVQKKNGKLKVIQEDKAHKSLGSLSVAAEVFEVGPSLYVVELRKSYGDASVYRQLCKRLSNDLGIAEAAGLVSSESLDI*