AlfalfaGEDB | Msa0205740

M. sativa cultivar zhongmu-4 / Msa0205740

KEGG: K07198
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007154 GO:0007165 GO:0007584 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009536 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0010035 GO:0010107 GO:0010118 GO:0015672 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0030001 GO:0031667 GO:0034220 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0071704 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:0140096 GO:1901564 GO:1901700
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205740	XP_003595594.1	93.478	460	5	1	1	435	1	460	0.0	879

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205740	sp\|Q93VD3\|CIPKN_ARATH	74.830	441	84	3	21	434	29	469	0.0	676

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205740	G7IIY1	93.478	460	5	1	1	435	1	460	0.0	879

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0205740	Msa0248910	0.898662	4.260987e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205740	MtrunA17_Chr2g0304111	93.478	460	5	1	1	435	1	460	0.0	879
Msa0205740	MtrunA17_Chr5g0441011	62.963	432	128	5	17	422	7	432	0.0	562
Msa0205740	MtrunA17_Chr8g0346081	61.806	432	131	5	17	422	11	434	0.0	550
Msa0205740	MtrunA17_Chr8g0346071	61.717	431	132	4	17	422	11	433	0.0	549
Msa0205740	MtrunA17_Chr4g0063881	53.023	430	172	4	17	420	5	430	1.50e-164	470
Msa0205740	MtrunA17_Chr5g0428031	53.256	430	169	5	19	421	5	429	1.06e-162	466
Msa0205740	MtrunA17_Chr4g0013131	54.987	391	164	6	22	408	11	393	7.10e-148	429
Msa0205740	MtrunA17_Chr2g0284031	50.860	407	176	5	21	408	29	430	3.30e-145	424
Msa0205740	MtrunA17_Chr8g0379091	50.120	415	175	5	21	408	24	433	3.07e-143	418
Msa0205740	MtrunA17_Chr2g0284011	52.130	399	185	4	14	408	3	399	3.58e-143	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0205740	AT1G30270.1	74.830	441	84	3	21	434	29	469	676
Msa0205740	AT1G30270.2	75.346	434	80	2	21	429	29	460	673
Msa0205740	AT1G01140.1	62.667	450	135	4	6	428	2	445	591
Msa0205740	AT1G01140.3	62.115	454	135	4	6	428	2	449	589
Msa0205740	AT1G01140.2	62.389	452	135	5	6	428	2	447	586
Msa0205740	AT1G30270.3	73.387	372	72	3	90	434	1	372	557
Msa0205740	AT2G26980.3	59.725	437	144	5	17	427	8	438	545
Msa0205740	AT2G26980.4	59.725	437	144	5	17	427	18	448	544
Msa0205740	AT2G26980.5	65.128	390	129	4	17	405	8	391	537
Msa0205740	AT5G21326.1	59.674	429	141	5	19	421	9	431	526

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Find 137 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCAACAGGAGAGA+TGG	0.515113	2_1:+32743665	None:intergenic
AAACTCACCCGAACTTGTTG+AGG	0.596291	2_1:+32747422	None:intergenic
AAAGAAAGAAAAGGTTTAGA+AGG	0.320435	2_1:+32751383	None:intergenic
AAAGCCTGAGAATTTGTTGC+TGG	0.449587	2_1:-32747492	Msa0205740:intron
AAATGTCATACGCATGCATG+AGG	0.640662	2_1:-32748284	Msa0205740:intron
AACGGAGGCAGCAGCAACGG+CGG	0.578341	2_1:-32750931	Msa0205740:CDS
AACGGCGGACGTGCGAAGGC+GGG	0.484040	2_1:-32750916	Msa0205740:CDS
AAGAAAAGGTTTAGAAGGAA+TGG	0.468246	2_1:+32751388	None:intergenic
AAGGCGGGAAAGTATGAGCT+GGG	0.606003	2_1:-32750901	Msa0205740:CDS
AATGAGACTCCCAAAATCTC+AGG	0.498737	2_1:-32751101	Msa0205740:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATAAGAGGTTTATGTG+AGG	+	chr2_1:32743656-32743675	None:intergenic	30.0%
AAGAAAAGGTTTAGAAGGAA+TGG	+	chr2_1:32743713-32743732	None:intergenic	30.0%
AGATTTAACGTTTGTGATTG+AGG	+	chr2_1:32743899-32743918	None:intergenic	30.0%
AGAGAGAAAGTGAAATAGTT+TGG	-	chr2_1:32744085-32744104	Msa0205740:intron	30.0%
GAACAAACTTAGTACTTGTT+TGG	-	chr2_1:32744631-32744650	Msa0205740:intron	30.0%
CACTGAATGACTAATGTATT+TGG	+	chr2_1:32744850-32744869	None:intergenic	30.0%
AAGAACAAATTATCATCGGT+AGG	+	chr2_1:32744981-32745000	None:intergenic	30.0%
AGTTGTTAGTGTTATGTGTA+CGG	-	chr2_1:32745259-32745278	Msa0205740:intron	30.0%
AATAACACGTCTTGATTCTT+GGG	-	chr2_1:32745346-32745365	Msa0205740:intron	30.0%
TGTATATGTTAGAGAAAGTG+TGG	-	chr2_1:32745604-32745623	Msa0205740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	32743625	32751495	32743625	ID=Msa0205740;Name=Msa0205740
chr2_1	mRNA	32743625	32751495	32743625	ID=Msa0205740-mRNA-1;Parent=Msa0205740;Name=Msa0205740-mRNA-1;_AED=0.18;_eAED=0.18;_QI=497\|0.92\|1\|1\|0.92\|0.86\|15\|386\|435
chr2_1	exon	32743625	32744030	32743625	ID=Msa0205740-mRNA-1:exon:11400;Parent=Msa0205740-mRNA-1
chr2_1	exon	32744886	32744958	32744886	ID=Msa0205740-mRNA-1:exon:11399;Parent=Msa0205740-mRNA-1
chr2_1	exon	32745354	32745410	32745354	ID=Msa0205740-mRNA-1:exon:11398;Parent=Msa0205740-mRNA-1
chr2_1	exon	32745706	32745822	32745706	ID=Msa0205740-mRNA-1:exon:11397;Parent=Msa0205740-mRNA-1
chr2_1	exon	32746070	32746195	32746070	ID=Msa0205740-mRNA-1:exon:11396;Parent=Msa0205740-mRNA-1
chr2_1	exon	32746288	32746407	32746288	ID=Msa0205740-mRNA-1:exon:11395;Parent=Msa0205740-mRNA-1
chr2_1	exon	32746561	32746650	32746561	ID=Msa0205740-mRNA-1:exon:11394;Parent=Msa0205740-mRNA-1
chr2_1	exon	32747087	32747212	32747087	ID=Msa0205740-mRNA-1:exon:11393;Parent=Msa0205740-mRNA-1
chr2_1	exon	32747286	32747339	32747286	ID=Msa0205740-mRNA-1:exon:11392;Parent=Msa0205740-mRNA-1
chr2_1	exon	32747430	32747510	32747430	ID=Msa0205740-mRNA-1:exon:11391;Parent=Msa0205740-mRNA-1
chr2_1	exon	32747859	32747966	32747859	ID=Msa0205740-mRNA-1:exon:11390;Parent=Msa0205740-mRNA-1
chr2_1	exon	32748077	32748148	32748077	ID=Msa0205740-mRNA-1:exon:11389;Parent=Msa0205740-mRNA-1
chr2_1	exon	32748285	32748347	32748285	ID=Msa0205740-mRNA-1:exon:11388;Parent=Msa0205740-mRNA-1
chr2_1	exon	32750777	32751423	32750777	ID=Msa0205740-mRNA-1:exon:11387;Parent=Msa0205740-mRNA-1
chr2_1	exon	32751445	32751495	32751445	ID=Msa0205740-mRNA-1:exon:11386;Parent=Msa0205740-mRNA-1
chr2_1	five_prime_UTR	32751445	32751495	32751445	ID=Msa0205740-mRNA-1:five_prime_utr;Parent=Msa0205740-mRNA-1
chr2_1	five_prime_UTR	32750978	32751423	32750978	ID=Msa0205740-mRNA-1:five_prime_utr;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32750777	32750977	32750777	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32748285	32748347	32748285	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32748077	32748148	32748077	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32747859	32747966	32747859	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32747430	32747510	32747430	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32747286	32747339	32747286	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32747087	32747212	32747087	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32746561	32746650	32746561	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32746288	32746407	32746288	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32746070	32746195	32746070	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32745706	32745822	32745706	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32745354	32745410	32745354	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32744886	32744958	32744886	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	CDS	32744011	32744030	32744011	ID=Msa0205740-mRNA-1:cds;Parent=Msa0205740-mRNA-1
chr2_1	three_prime_UTR	32743625	32744010	32743625	ID=Msa0205740-mRNA-1:three_prime_utr;Parent=Msa0205740-mRNA-1

Gene Sequence

>Msa0205740

ATGACGTCACGTTCATCGAATAGCAACGGAGGCAGCAGCAACGGCGGACGTGCGAAGGCGGGAAAGTATGAGCTGGGTAGGACGTTAGGAGAAGGTAATTTCGCGAAGGTGAAGTTTGCGAGACATGTTGAAACTGGTGATCATGTTGCTATCAAGATACTTGATAAAGAAAAAATTCTCAAGCATAAAATGATTCGTCAGATAAAACAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGCATGAGGTAATAGCTAACAGGTCAAAGATATTCATCGTAATGGAACTCGTGACTGGTGGGGAACTGTTTGATAAAATTGCTCGCAGTGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCACAGAGATCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAACGCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGTGGTACACCAAATTATGTTGCTCCAGAGGTGATCCAAAACAAAGGGTATGATGGTGCAATTGCAGATCTCTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTATTTGCCTTTTGAAGAAGACAATCTTGTAGCTTTATATAAAAAGATTTTCAAGGCCGACTTTACCTGCCCTCCATGGTTCTCATCAAGTGCAAAGAAGCTAATCAAAAGAATTCTTGATCCCAGTCCTATCACACGGATTAAAATTGCCGAGGTCATTGAAAATGAGTGGTTCAAGAAGGGATATAAACCTCCTGTGTTTGAACAGGCCGATGTTAGTCTTGATGATGTAAATTCTATTTTTAATGGTTATATGGATTCAGATAATATTGTTGTTGAGAGGCAAGAAGAGGGACCTGTTGCACCTGTCACCATGAATGCCTTTGAACTTATCTCTAAATCTCAGGGCCTCAACCTTAGCAGTCTTTTCGAGAAGCAAATGGGACTTGTTAAAAGGGAAACGAGATTCACATCCAAATGTTCAGCGAATGAGATAATTTCAAAAATCGAGAAAACTGCAGGACCTCTGGGTTTTGATGTCAAGAAGAACAACTGCAAGTTAAGGATTTATGGGGAAAAGACTGGACGGAAAGGCCATCTATCTGTAGCTACTGAGTTCTACAAAAGTATAACTACTGGGCTGAAAGATATTGTTTGGAGAGCAGATCCTATTGCTGAAGAAAATGATGGTGCCAGTACCTCAAAATAA

Protein sequence

>Msa0205740

MTSRSSNSNGGSSNGGRAKAGKYELGRTLGEGNFAKVKFARHVETGDHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANRSKIFIVMELVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGTLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIQNKGYDGAIADLWSCGVILFVLMAGYLPFEEDNLVALYKKIFKADFTCPPWFSSSAKKLIKRILDPSPITRIKIAEVIENEWFKKGYKPPVFEQADVSLDDVNSIFNGYMDSDNIVVERQEEGPVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIEKTAGPLGFDVKKNNCKLRIYGEKTGRKGHLSVATEFYKSITTGLKDIVWRADPIAEENDGASTSK*