Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209230 | XP_039686514.1 | 87.715 | 407 | 29 | 2 | 1 | 406 | 1 | 387 | 0.0 | 718 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209230 | sp|Q9FG14|MYOB7_ARATH | 52.525 | 99 | 47 | 0 | 21 | 119 | 76 | 174 | 7.18e-23 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209230 | A0A396JC32 | 87.715 | 407 | 29 | 2 | 1 | 406 | 1 | 387 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0208010 | Msa0209230 | 0.811120 | 8.205548e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209230 | MtrunA17_Chr2g0307041 | 87.715 | 407 | 29 | 2 | 1 | 406 | 1 | 387 | 0.0 | 718 |
| Msa0209230 | MtrunA17_Chr4g0073651 | 47.619 | 462 | 188 | 14 | 12 | 429 | 2 | 453 | 1.48e-102 | 313 |
| Msa0209230 | MtrunA17_Chr1g0176391 | 51.515 | 99 | 48 | 0 | 21 | 119 | 67 | 165 | 2.07e-19 | 90.9 |
| Msa0209230 | MtrunA17_Chr7g0268041 | 49.515 | 103 | 52 | 0 | 17 | 119 | 68 | 170 | 8.67e-18 | 85.9 |
| Msa0209230 | MtrunA17_Chr4g0049631 | 43.902 | 82 | 46 | 0 | 34 | 115 | 318 | 399 | 5.45e-14 | 73.9 |
| Msa0209230 | MtrunA17_Chr1g0184441 | 45.349 | 86 | 47 | 0 | 27 | 112 | 541 | 626 | 9.94e-13 | 70.5 |
| Msa0209230 | MtrunA17_Chr3g0093241 | 43.396 | 106 | 60 | 0 | 13 | 118 | 328 | 433 | 1.36e-11 | 66.6 |
| Msa0209230 | MtrunA17_Chr5g0434681 | 43.836 | 73 | 41 | 0 | 22 | 94 | 623 | 695 | 7.75e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0209230 | AT5G57830.1 | 40.647 | 278 | 149 | 6 | 18 | 285 | 18 | 289 | 1.42e-37 | 142 |
| Msa0209230 | AT4G30830.1 | 35.233 | 193 | 100 | 4 | 23 | 207 | 22 | 197 | 6.82e-27 | 111 |
| Msa0209230 | AT4G30830.2 | 35.233 | 193 | 100 | 4 | 23 | 207 | 22 | 197 | 6.82e-27 | 111 |
| Msa0209230 | AT5G06560.1 | 52.525 | 99 | 47 | 0 | 21 | 119 | 76 | 174 | 7.30e-24 | 104 |
| Msa0209230 | AT2G24140.2 | 55.556 | 90 | 40 | 0 | 30 | 119 | 30 | 119 | 2.36e-23 | 100 |
| Msa0209230 | AT2G24140.3 | 55.556 | 90 | 40 | 0 | 30 | 119 | 30 | 119 | 2.36e-23 | 100 |
| Msa0209230 | AT3G54740.8 | 48.000 | 100 | 52 | 0 | 21 | 120 | 28 | 127 | 3.65e-22 | 98.6 |
| Msa0209230 | AT3G54740.1 | 48.000 | 100 | 52 | 0 | 21 | 120 | 28 | 127 | 3.65e-22 | 98.6 |
| Msa0209230 | AT3G54740.7 | 48.000 | 100 | 52 | 0 | 21 | 120 | 28 | 127 | 3.65e-22 | 98.6 |
| Msa0209230 | AT3G54740.4 | 48.000 | 100 | 52 | 0 | 21 | 120 | 28 | 127 | 3.65e-22 | 98.6 |
| Msa0209230 | AT3G54740.3 | 48.485 | 99 | 51 | 0 | 21 | 119 | 76 | 174 | 4.69e-22 | 98.6 |
| Msa0209230 | AT3G54740.6 | 48.485 | 99 | 51 | 0 | 21 | 119 | 76 | 174 | 4.69e-22 | 98.6 |
| Msa0209230 | AT3G54740.2 | 48.485 | 99 | 51 | 0 | 21 | 119 | 76 | 174 | 4.69e-22 | 98.6 |
| Msa0209230 | AT3G54740.5 | 48.485 | 99 | 51 | 0 | 21 | 119 | 76 | 174 | 4.69e-22 | 98.6 |
| Msa0209230 | AT2G24140.4 | 54.412 | 68 | 31 | 0 | 52 | 119 | 1 | 68 | 4.23e-16 | 79.0 |
| Msa0209230 | AT2G24140.1 | 54.412 | 68 | 31 | 0 | 52 | 119 | 1 | 68 | 4.23e-16 | 79.0 |
| Msa0209230 | AT5G16720.1 | 43.750 | 96 | 54 | 0 | 21 | 116 | 362 | 457 | 1.04e-15 | 80.1 |
| Msa0209230 | AT3G11850.2 | 39.000 | 100 | 61 | 0 | 21 | 120 | 67 | 166 | 1.07e-15 | 79.7 |
| Msa0209230 | AT3G11850.1 | 39.000 | 100 | 61 | 0 | 21 | 120 | 67 | 166 | 1.07e-15 | 79.7 |
| Msa0209230 | AT1G74830.1 | 42.857 | 98 | 53 | 1 | 23 | 120 | 309 | 403 | 9.37e-13 | 70.9 |
| Msa0209230 | AT1G70750.1 | 40.860 | 93 | 55 | 0 | 23 | 115 | 420 | 512 | 1.37e-12 | 70.5 |
| Msa0209230 | AT2G30690.1 | 35.897 | 117 | 71 | 1 | 2 | 114 | 595 | 711 | 1.17e-11 | 67.4 |
| Msa0209230 | AT2G30690.2 | 35.897 | 117 | 71 | 1 | 2 | 114 | 595 | 711 | 1.17e-11 | 67.4 |
Find 93 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGAATGTTTCTGTTTA+TGG | 0.115433 | 2_1:+46623387 | Msa0209230:CDS |
| CATAGTTTCACTGCTGATTT+AGG | 0.187737 | 2_1:+46623420 | Msa0209230:CDS |
| CAGGCTTCAGCTCGAGTTTC+GGG | 0.217734 | 2_1:+46622219 | Msa0209230:CDS |
| ATCTCTCAAGTTTCAATTAC+AGG | 0.220907 | 2_1:+46622011 | Msa0209230:CDS |
| ATAACTGAATTCATGCTTTC+CGG | 0.247521 | 2_1:-46622565 | None:intergenic |
| TAGAGTTTAATTTGTTTGTT+TGG | 0.305441 | 2_1:-46622431 | None:intergenic |
| ACAGGCTTCAGCTCGAGTTT+CGG | 0.306645 | 2_1:+46622218 | Msa0209230:CDS |
| ATTTGAATGTTTCTGTTTAT+GGG | 0.311357 | 2_1:+46623388 | Msa0209230:CDS |
| ATCACATGTGGCTTTGAATC+AGG | 0.318662 | 2_1:+46622831 | Msa0209230:CDS |
| CATGCTTTCCGGTGGCTTGT+GGG | 0.347905 | 2_1:-46622554 | None:intergenic |
| ATTTACTACTTCATATGAAT+TGG | 0.365872 | 2_1:-46622454 | None:intergenic |
| TCCGATCAACACCCTCTCTC+AGG | 0.367132 | 2_1:-46622182 | None:intergenic |
| GGAGCAAACTTGAGAAATAA+AGG | 0.378910 | 2_1:+46622351 | Msa0209230:CDS |
| ATCAATCAAAGGTTAGTCTA+TGG | 0.385961 | 2_1:-46623464 | None:intergenic |
| TCATGCTTTCCGGTGGCTTG+TGG | 0.419348 | 2_1:-46622555 | None:intergenic |
| CACACACCAAGCTAGGTTCC+TGG | 0.440723 | 2_1:-46622245 | None:intergenic |
| AGAGAAGTCCGTGGTGGAGA+TGG | 0.444054 | 2_1:+46621885 | Msa0209230:CDS |
| GTTTCAATTACAGGCTTACA+AGG | 0.445734 | 2_1:+46622020 | Msa0209230:CDS |
| AGCTCGAGTTTCGGGTGACC+AGG | 0.448374 | 2_1:+46622227 | Msa0209230:CDS |
| CACAGCAGCAAGAGAGGCAA+TGG | 0.454950 | 2_1:+46621840 | Msa0209230:CDS |
| CAAATACAAGTGATCAAAAC+GGG | 0.455981 | 2_1:+46622100 | Msa0209230:CDS |
| CCTAGCTTGGTGTGTGGAAG+TGG | 0.458814 | 2_1:+46622252 | Msa0209230:CDS |
| CATTGCCTCTCTTGCTGCTG+TGG | 0.461847 | 2_1:-46621839 | None:intergenic |
| AAAGGCAGAGAGCTAGTAGA+AGG | 0.462861 | 2_1:+46622799 | Msa0209230:CDS |
| AAAAGCTTCGAGGGTGGCTT+CGG | 0.467471 | 2_1:-46621953 | None:intergenic |
| AAGGACAAACTTGTGAGCTT+AGG | 0.472100 | 2_1:+46622039 | Msa0209230:CDS |
| AGAAGTGATGTATCAGTAGT+AGG | 0.476141 | 2_1:+46621736 | Msa0209230:CDS |
| GTGGAACTCTAGATTCATAC+TGG | 0.479508 | 2_1:+46622271 | Msa0209230:CDS |
| GGCAAGTCAGTTCAAGAGAA+TGG | 0.479526 | 2_1:+46621909 | Msa0209230:CDS |
| ATGATCAGAAAATGTTGTAC+TGG | 0.490198 | 2_1:-46622496 | None:intergenic |
| GCAGAAGTTGTATGTGGAGT+TGG | 0.490581 | 2_1:+46621795 | Msa0209230:CDS |
| GGGATAAGAAAGCTTGAGAA+AGG | 0.501960 | 2_1:+46622594 | Msa0209230:CDS |
| GAGAGGGTGTTGATCGGAAG+GGG | 0.505948 | 2_1:+46622187 | Msa0209230:CDS |
| CCACTTCCACACACCAAGCT+AGG | 0.505953 | 2_1:-46622252 | None:intergenic |
| TCAAATACAAGTGATCAAAA+CGG | 0.506951 | 2_1:+46622099 | Msa0209230:CDS |
| AGAGAATTGTTAGGCTTCAA+AGG | 0.510717 | 2_1:+46622781 | Msa0209230:CDS |
| AAAGTTCTTCAAAAGCTTCG+AGG | 0.515841 | 2_1:-46621963 | None:intergenic |
| AAGATGATAAGAGAATTGTT+AGG | 0.518913 | 2_1:+46622772 | Msa0209230:CDS |
| TTACATTAGACACACTATGT+AGG | 0.522729 | 2_1:+46623363 | Msa0209230:intron |
| GAGAGAGGGTGTTGATCGGA+AGG | 0.525213 | 2_1:+46622185 | Msa0209230:CDS |
| TCAGAAAATGTTGTACTGGC+AGG | 0.527644 | 2_1:-46622492 | None:intergenic |
| ATTTCAGATTCGAACAACAT+AGG | 0.531169 | 2_1:+46622330 | Msa0209230:CDS |
| AAGGGAACGGTGACTATCGC+TGG | 0.532087 | 2_1:+46622708 | Msa0209230:CDS |
| GGATAAGAAAGCTTGAGAAA+GGG | 0.533883 | 2_1:+46622595 | Msa0209230:CDS |
| TGTGGAGTTGGATGAGGAAA+GGG | 0.535394 | 2_1:+46621807 | Msa0209230:CDS |
| CCCTGAGAGAGGGTGTTGAT+CGG | 0.539217 | 2_1:+46622181 | Msa0209230:CDS |
| GTTGTATGTGGAGTTGGATG+AGG | 0.547907 | 2_1:+46621801 | Msa0209230:CDS |
| AAAACTAGAATCTGTGTCTG+AGG | 0.548604 | 2_1:+46622644 | Msa0209230:CDS |
| AGAATGGCAGAAGAGAAGAT+AGG | 0.553739 | 2_1:+46621925 | Msa0209230:CDS |
| AAGTTCTTCAAAAGCTTCGA+GGG | 0.555984 | 2_1:-46621962 | None:intergenic |
| TAGAATCTGTGTCTGAGGGA+AGG | 0.556401 | 2_1:+46622649 | Msa0209230:CDS |
| TCACATGTGGCTTTGAATCA+GGG | 0.558091 | 2_1:+46622832 | Msa0209230:CDS |
| GGGTGACCAGGAACCTAGCT+TGG | 0.562082 | 2_1:+46622239 | Msa0209230:CDS |
| AGAATCTGTGTCTGAGGGAA+GGG | 0.564068 | 2_1:+46622650 | Msa0209230:CDS |
| ACATGATGCAGACAAGGGAA+AGG | 0.564199 | 2_1:+46622689 | Msa0209230:CDS |
| CCGATCAACACCCTCTCTCA+GGG | 0.565306 | 2_1:-46622181 | None:intergenic |
| AGAGGGTGTTGATCGGAAGG+GGG | 0.568671 | 2_1:+46622188 | Msa0209230:CDS |
| GACATGATACTGCGTTTACA+AGG | 0.572241 | 2_1:+46621862 | Msa0209230:CDS |
| CATGATGCAGACAAGGGAAA+GGG | 0.573658 | 2_1:+46622690 | Msa0209230:CDS |
| CATGAATTCAGTTATAGCGA+AGG | 0.574527 | 2_1:+46622573 | Msa0209230:CDS |
| CTTCGAGGGTGGCTTCGGCA+TGG | 0.580049 | 2_1:-46621948 | None:intergenic |
| TTCAGCCACAGCAGCAAGAG+AGG | 0.580131 | 2_1:+46621834 | Msa0209230:CDS |
| TGGCCAGAAGAAAGAAAAGA+TGG | 0.580704 | 2_1:+46622728 | Msa0209230:CDS |
| GAAGTCCGTGGTGGAGATGG+AGG | 0.588348 | 2_1:+46621888 | Msa0209230:CDS |
| TTCTTCAAAAGCTTCGAGGG+TGG | 0.594607 | 2_1:-46621959 | None:intergenic |
| TTTGAAGTCCCACAAGCCAC+CGG | 0.596974 | 2_1:+46622546 | Msa0209230:CDS |
| CACAACATCATCCACAGCGG+TGG | 0.602686 | 2_1:-46622946 | None:intergenic |
| AAACTAGAATCTGTGTCTGA+GGG | 0.604202 | 2_1:+46622645 | Msa0209230:CDS |
| AAGATTCCGACCCTGAGAGA+GGG | 0.604946 | 2_1:+46622171 | Msa0209230:CDS |
| ATGAATTCAGTTATAGCGAA+GGG | 0.609860 | 2_1:+46622574 | Msa0209230:CDS |
| ATGTGGAGTTGGATGAGGAA+AGG | 0.609938 | 2_1:+46621806 | Msa0209230:CDS |
| GGTATGGTGAAGAGCAGTTG+AGG | 0.614053 | 2_1:+46622853 | Msa0209230:CDS |
| TTTAAACATGATGCAGACAA+GGG | 0.615907 | 2_1:+46622684 | Msa0209230:CDS |
| AAAGATTCCGACCCTGAGAG+AGG | 0.616755 | 2_1:+46622170 | Msa0209230:CDS |
| TGTGGCTTTGAATCAGGGTA+TGG | 0.617321 | 2_1:+46622837 | Msa0209230:CDS |
| TCAACACCCTCTCTCAGGGT+CGG | 0.619080 | 2_1:-46622177 | None:intergenic |
| TGCAGACAAGGGAAAGGGAA+CGG | 0.623024 | 2_1:+46622695 | Msa0209230:CDS |
| ACGGGAGCACGGTTATGAGA+AGG | 0.624797 | 2_1:+46622118 | Msa0209230:CDS |
| AGTAAGATAAACTCTGAATG+TGG | 0.625640 | 2_1:+46622408 | Msa0209230:CDS |
| AGAGAGGGTGTTGATCGGAA+GGG | 0.630662 | 2_1:+46622186 | Msa0209230:CDS |
| AAGTGATCAAAACGGGAGCA+CGG | 0.633691 | 2_1:+46622107 | Msa0209230:CDS |
| GCAAACTTGAGAAATAAAGG+AGG | 0.645182 | 2_1:+46622354 | Msa0209230:CDS |
| ACTGAATTCATGCTTTCCGG+TGG | 0.646451 | 2_1:-46622562 | None:intergenic |
| AGGTATCATGACATCACATG+TGG | 0.668252 | 2_1:+46622819 | Msa0209230:CDS |
| ACTTGAGAAATAAAGGAGGG+AGG | 0.674685 | 2_1:+46622358 | Msa0209230:CDS |
| ACTTGCCTCCATCTCCACCA+CGG | 0.681453 | 2_1:-46621893 | None:intergenic |
| CAGGAACCTAGCTTGGTGTG+TGG | 0.684270 | 2_1:+46622246 | Msa0209230:CDS |
| CAAACTTGAGAAATAAAGGA+GGG | 0.690446 | 2_1:+46622355 | Msa0209230:CDS |
| GCTTGAGAAAGGGAATTCTG+TGG | 0.704866 | 2_1:+46622605 | Msa0209230:CDS |
| TGTATCAGTAGTAGGCGCGA+CGG | 0.705304 | 2_1:+46621744 | Msa0209230:CDS |
| ACAAGGAGAGAAGTCCGTGG+TGG | 0.724567 | 2_1:+46621879 | Msa0209230:CDS |
| TTTACAAGGAGAGAAGTCCG+TGG | 0.769507 | 2_1:+46621876 | Msa0209230:CDS |
| AGACACAACATCATCCACAG+CGG | 0.826275 | 2_1:-46622949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTAAAAAAAATTCA+TGG | - | chr2_1:46623053-46623072 | None:intergenic | 10.0% |
| !! | TCAAGAATTCATAAAAAAAA+AGG | - | chr2_1:46623137-46623156 | None:intergenic | 15.0% |
| !!! | ATTAGTTCTTATTATTTCAA+AGG | - | chr2_1:46623185-46623204 | None:intergenic | 15.0% |
| !!! | TAGAGTTTAATTTGTTTGTT+TGG | - | chr2_1:46622434-46622453 | None:intergenic | 20.0% |
| !! | ATTTACTACTTCATATGAAT+TGG | - | chr2_1:46622457-46622476 | None:intergenic | 20.0% |
| !! | TTTATGAATTCTTGAATTGT+TGG | + | chr2_1:46623142-46623161 | Msa0209230:intron | 20.0% |
| !! | TTCTTATTATTTCAAAGGAA+AGG | - | chr2_1:46623180-46623199 | None:intergenic | 20.0% |
| !! | AATGACTAATTTATATGAAC+AGG | + | chr2_1:46623202-46623221 | Msa0209230:intron | 20.0% |
| !!! | AATTTGAATGTTTCTGTTTA+TGG | + | chr2_1:46623387-46623406 | Msa0209230:CDS | 20.0% |
| !!! | ATTTGAATGTTTCTGTTTAT+GGG | + | chr2_1:46623388-46623407 | Msa0209230:CDS | 20.0% |
| !! | ACTTTTGTATGAAAAAGAGA+TGG | + | chr2_1:46621981-46622000 | Msa0209230:CDS | 25.0% |
| ! | TCAAATACAAGTGATCAAAA+CGG | + | chr2_1:46622099-46622118 | Msa0209230:CDS | 25.0% |
| !!! | AATCTTTTTAAAGCGAATTG+GGG | - | chr2_1:46622157-46622176 | None:intergenic | 25.0% |
| !!! | GAATCTTTTTAAAGCGAATT+GGG | - | chr2_1:46622158-46622177 | None:intergenic | 25.0% |
| ! | AAGATGATAAGAGAATTGTT+AGG | + | chr2_1:46622772-46622791 | Msa0209230:CDS | 25.0% |
| ! | AGATTATATACATTACCTCT+TGG | - | chr2_1:46622986-46623005 | None:intergenic | 25.0% |
| ! | AAGAGGTAATGTATATAATC+TGG | + | chr2_1:46622985-46623004 | Msa0209230:intron | 25.0% |
| ATCTCTCAAGTTTCAATTAC+AGG | + | chr2_1:46622011-46622030 | Msa0209230:CDS | 30.0% | |
| CAAATACAAGTGATCAAAAC+GGG | + | chr2_1:46622100-46622119 | Msa0209230:CDS | 30.0% | |
| !!! | ATCTTTTTAAAGCGAATTGG+GGG | - | chr2_1:46622156-46622175 | None:intergenic | 30.0% |
| !!! | GGAATCTTTTTAAAGCGAAT+TGG | - | chr2_1:46622159-46622178 | None:intergenic | 30.0% |
| ATTTCAGATTCGAACAACAT+AGG | + | chr2_1:46622330-46622349 | Msa0209230:CDS | 30.0% | |
| CAAACTTGAGAAATAAAGGA+GGG | + | chr2_1:46622355-46622374 | Msa0209230:CDS | 30.0% | |
| AGTAAGATAAACTCTGAATG+TGG | + | chr2_1:46622408-46622427 | Msa0209230:CDS | 30.0% | |
| ATGATCAGAAAATGTTGTAC+TGG | - | chr2_1:46622499-46622518 | None:intergenic | 30.0% | |
| ATAACTGAATTCATGCTTTC+CGG | - | chr2_1:46622568-46622587 | None:intergenic | 30.0% | |
| ATGAATTCAGTTATAGCGAA+GGG | + | chr2_1:46622574-46622593 | Msa0209230:CDS | 30.0% | |
| ! | TTTTAAACATGATGCAGACA+AGG | + | chr2_1:46622683-46622702 | Msa0209230:CDS | 30.0% |
| TTTAAACATGATGCAGACAA+GGG | + | chr2_1:46622684-46622703 | Msa0209230:CDS | 30.0% | |
| ! | AATCCATCTTTTCTTTCTTC+TGG | - | chr2_1:46622734-46622753 | None:intergenic | 30.0% |
| AAAAATTCATGGATGCATGT+AGG | - | chr2_1:46623042-46623061 | None:intergenic | 30.0% | |
| ACACAGATTTATGTTGGATA+TGG | + | chr2_1:46623314-46623333 | Msa0209230:intron | 30.0% | |
| TTACATTAGACACACTATGT+AGG | + | chr2_1:46623363-46623382 | Msa0209230:intron | 30.0% | |
| AGAAGTGATGTATCAGTAGT+AGG | + | chr2_1:46621736-46621755 | Msa0209230:CDS | 35.0% | |
| ! | ACTTTTGCAGAAGTTGTATG+TGG | + | chr2_1:46621789-46621808 | Msa0209230:CDS | 35.0% |
| AAGTTCTTCAAAAGCTTCGA+GGG | - | chr2_1:46621965-46621984 | None:intergenic | 35.0% | |
| AAAGTTCTTCAAAAGCTTCG+AGG | - | chr2_1:46621966-46621985 | None:intergenic | 35.0% | |
| GTTTCAATTACAGGCTTACA+AGG | + | chr2_1:46622020-46622039 | Msa0209230:CDS | 35.0% | |
| GGAGCAAACTTGAGAAATAA+AGG | + | chr2_1:46622351-46622370 | Msa0209230:CDS | 35.0% | |
| GCAAACTTGAGAAATAAAGG+AGG | + | chr2_1:46622354-46622373 | Msa0209230:CDS | 35.0% | |
| CATGAATTCAGTTATAGCGA+AGG | + | chr2_1:46622573-46622592 | Msa0209230:CDS | 35.0% | |
| GGATAAGAAAGCTTGAGAAA+GGG | + | chr2_1:46622595-46622614 | Msa0209230:CDS | 35.0% | |
| AAAACTAGAATCTGTGTCTG+AGG | + | chr2_1:46622644-46622663 | Msa0209230:CDS | 35.0% | |
| AAACTAGAATCTGTGTCTGA+GGG | + | chr2_1:46622645-46622664 | Msa0209230:CDS | 35.0% | |
| AGAGAATTGTTAGGCTTCAA+AGG | + | chr2_1:46622781-46622800 | Msa0209230:CDS | 35.0% | |
| ! | GTCTTTTGAATTTCTCCAAG+AGG | + | chr2_1:46622968-46622987 | Msa0209230:CDS | 35.0% |
| ATGTAACGCAGTGAGTTTAT+AGG | - | chr2_1:46623283-46623302 | None:intergenic | 35.0% | |
| CTCAACACACAGATTTATGT+TGG | + | chr2_1:46623308-46623327 | Msa0209230:intron | 35.0% | |
| !! | CATAGTTTCACTGCTGATTT+AGG | + | chr2_1:46623420-46623439 | Msa0209230:CDS | 35.0% |
| GACATGATACTGCGTTTACA+AGG | + | chr2_1:46621862-46621881 | Msa0209230:CDS | 40.0% | |
| AGAATGGCAGAAGAGAAGAT+AGG | + | chr2_1:46621925-46621944 | Msa0209230:CDS | 40.0% | |
| AAGGACAAACTTGTGAGCTT+AGG | + | chr2_1:46622039-46622058 | Msa0209230:CDS | 40.0% | |
| GTGGAACTCTAGATTCATAC+TGG | + | chr2_1:46622271-46622290 | Msa0209230:CDS | 40.0% | |
| ACTTGAGAAATAAAGGAGGG+AGG | + | chr2_1:46622358-46622377 | Msa0209230:CDS | 40.0% | |
| ! | TCAGAAAATGTTGTACTGGC+AGG | - | chr2_1:46622495-46622514 | None:intergenic | 40.0% |
| GGGATAAGAAAGCTTGAGAA+AGG | + | chr2_1:46622594-46622613 | Msa0209230:CDS | 40.0% | |
| TGGCCAGAAGAAAGAAAAGA+TGG | + | chr2_1:46622728-46622747 | Msa0209230:CDS | 40.0% | |
| AGGTATCATGACATCACATG+TGG | + | chr2_1:46622819-46622838 | Msa0209230:CDS | 40.0% | |
| !! | ATCACATGTGGCTTTGAATC+AGG | + | chr2_1:46622831-46622850 | Msa0209230:CDS | 40.0% |
| !! | TCACATGTGGCTTTGAATCA+GGG | + | chr2_1:46622832-46622851 | Msa0209230:CDS | 40.0% |
| ! | AACAGGCAATGTTGCACTTT+TGG | + | chr2_1:46623219-46623238 | Msa0209230:intron | 40.0% |
| AGTTTATAGGTAGCACGAGA+TGG | - | chr2_1:46623270-46623289 | None:intergenic | 40.0% | |
| GCAGAAGTTGTATGTGGAGT+TGG | + | chr2_1:46621795-46621814 | Msa0209230:CDS | 45.0% | |
| GTTGTATGTGGAGTTGGATG+AGG | + | chr2_1:46621801-46621820 | Msa0209230:CDS | 45.0% | |
| ATGTGGAGTTGGATGAGGAA+AGG | + | chr2_1:46621806-46621825 | Msa0209230:CDS | 45.0% | |
| TGTGGAGTTGGATGAGGAAA+GGG | + | chr2_1:46621807-46621826 | Msa0209230:CDS | 45.0% | |
| TTTACAAGGAGAGAAGTCCG+TGG | + | chr2_1:46621876-46621895 | Msa0209230:CDS | 45.0% | |
| GGCAAGTCAGTTCAAGAGAA+TGG | + | chr2_1:46621909-46621928 | Msa0209230:CDS | 45.0% | |
| TTCTTCAAAAGCTTCGAGGG+TGG | - | chr2_1:46621962-46621981 | None:intergenic | 45.0% | |
| AAGTGATCAAAACGGGAGCA+CGG | + | chr2_1:46622107-46622126 | Msa0209230:CDS | 45.0% | |
| ACTGAATTCATGCTTTCCGG+TGG | - | chr2_1:46622565-46622584 | None:intergenic | 45.0% | |
| GCTTGAGAAAGGGAATTCTG+TGG | + | chr2_1:46622605-46622624 | Msa0209230:CDS | 45.0% | |
| TAGAATCTGTGTCTGAGGGA+AGG | + | chr2_1:46622649-46622668 | Msa0209230:CDS | 45.0% | |
| AGAATCTGTGTCTGAGGGAA+GGG | + | chr2_1:46622650-46622669 | Msa0209230:CDS | 45.0% | |
| ACATGATGCAGACAAGGGAA+AGG | + | chr2_1:46622689-46622708 | Msa0209230:CDS | 45.0% | |
| CATGATGCAGACAAGGGAAA+GGG | + | chr2_1:46622690-46622709 | Msa0209230:CDS | 45.0% | |
| AAAGGCAGAGAGCTAGTAGA+AGG | + | chr2_1:46622799-46622818 | Msa0209230:CDS | 45.0% | |
| !! | TGTGGCTTTGAATCAGGGTA+TGG | + | chr2_1:46622837-46622856 | Msa0209230:CDS | 45.0% |
| ! | AGAGCAGTTGAGGCTTTTGA+AGG | + | chr2_1:46622863-46622882 | Msa0209230:CDS | 45.0% |
| AGACACAACATCATCCACAG+CGG | - | chr2_1:46622952-46622971 | None:intergenic | 45.0% | |
| CATGGATGCATGTAGGCAAT+AGG | - | chr2_1:46623035-46623054 | None:intergenic | 45.0% | |
| TGTATCAGTAGTAGGCGCGA+CGG | + | chr2_1:46621744-46621763 | Msa0209230:CDS | 50.0% | |
| AAAAGCTTCGAGGGTGGCTT+CGG | - | chr2_1:46621956-46621975 | None:intergenic | 50.0% | |
| AAAGATTCCGACCCTGAGAG+AGG | + | chr2_1:46622170-46622189 | Msa0209230:CDS | 50.0% | |
| AAGATTCCGACCCTGAGAGA+GGG | + | chr2_1:46622171-46622190 | Msa0209230:CDS | 50.0% | |
| !! | AGAGAGGGTGTTGATCGGAA+GGG | + | chr2_1:46622186-46622205 | Msa0209230:CDS | 50.0% |
| ACAGGCTTCAGCTCGAGTTT+CGG | + | chr2_1:46622218-46622237 | Msa0209230:CDS | 50.0% | |
| ! | TTTGAAGTCCCACAAGCCAC+CGG | + | chr2_1:46622546-46622565 | Msa0209230:CDS | 50.0% |
| TGCAGACAAGGGAAAGGGAA+CGG | + | chr2_1:46622695-46622714 | Msa0209230:CDS | 50.0% | |
| GGTATGGTGAAGAGCAGTTG+AGG | + | chr2_1:46622853-46622872 | Msa0209230:CDS | 50.0% | |
| AACCAAAAAGTCCACCGCTG+TGG | + | chr2_1:46622935-46622954 | Msa0209230:CDS | 50.0% | |
| !! | ATCCACAGCGGTGGACTTTT+TGG | - | chr2_1:46622940-46622959 | None:intergenic | 50.0% |
| CTAAAGCTCCCGTATACGCA+GGG | - | chr2_1:46623102-46623121 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGTATACGC+AGG | - | chr2_1:46623103-46623122 | None:intergenic | 50.0% | |
| TTCAGCCACAGCAGCAAGAG+AGG | + | chr2_1:46621834-46621853 | Msa0209230:CDS | 55.0% | |
| CATTGCCTCTCTTGCTGCTG+TGG | - | chr2_1:46621842-46621861 | None:intergenic | 55.0% | |
| CACAGCAGCAAGAGAGGCAA+TGG | + | chr2_1:46621840-46621859 | Msa0209230:CDS | 55.0% | |
| ACAAGGAGAGAAGTCCGTGG+TGG | + | chr2_1:46621879-46621898 | Msa0209230:CDS | 55.0% | |
| ! | AGAGAAGTCCGTGGTGGAGA+TGG | + | chr2_1:46621885-46621904 | Msa0209230:CDS | 55.0% |
| ACTTGCCTCCATCTCCACCA+CGG | - | chr2_1:46621896-46621915 | None:intergenic | 55.0% | |
| ! | ACGGGAGCACGGTTATGAGA+AGG | + | chr2_1:46622118-46622137 | Msa0209230:CDS | 55.0% |
| TCAACACCCTCTCTCAGGGT+CGG | - | chr2_1:46622180-46622199 | None:intergenic | 55.0% | |
| CCGATCAACACCCTCTCTCA+GGG | - | chr2_1:46622184-46622203 | None:intergenic | 55.0% | |
| !! | CCCTGAGAGAGGGTGTTGAT+CGG | + | chr2_1:46622181-46622200 | Msa0209230:CDS | 55.0% |
| TCCGATCAACACCCTCTCTC+AGG | - | chr2_1:46622185-46622204 | None:intergenic | 55.0% | |
| !! | GAGAGAGGGTGTTGATCGGA+AGG | + | chr2_1:46622185-46622204 | Msa0209230:CDS | 55.0% |
| !! | GAGAGGGTGTTGATCGGAAG+GGG | + | chr2_1:46622187-46622206 | Msa0209230:CDS | 55.0% |
| !! | AGAGGGTGTTGATCGGAAGG+GGG | + | chr2_1:46622188-46622207 | Msa0209230:CDS | 55.0% |
| TCGGAAGGGGGAAAGATCAC+AGG | + | chr2_1:46622200-46622219 | Msa0209230:CDS | 55.0% | |
| CAGGCTTCAGCTCGAGTTTC+GGG | + | chr2_1:46622219-46622238 | Msa0209230:CDS | 55.0% | |
| CACACACCAAGCTAGGTTCC+TGG | - | chr2_1:46622248-46622267 | None:intergenic | 55.0% | |
| !! | CAGGAACCTAGCTTGGTGTG+TGG | + | chr2_1:46622246-46622265 | Msa0209230:CDS | 55.0% |
| CCACTTCCACACACCAAGCT+AGG | - | chr2_1:46622255-46622274 | None:intergenic | 55.0% | |
| !! | CCTAGCTTGGTGTGTGGAAG+TGG | + | chr2_1:46622252-46622271 | Msa0209230:CDS | 55.0% |
| ! | CATGCTTTCCGGTGGCTTGT+GGG | - | chr2_1:46622557-46622576 | None:intergenic | 55.0% |
| TCATGCTTTCCGGTGGCTTG+TGG | - | chr2_1:46622558-46622577 | None:intergenic | 55.0% | |
| AAGGGAACGGTGACTATCGC+TGG | + | chr2_1:46622708-46622727 | Msa0209230:CDS | 55.0% | |
| CACAACATCATCCACAGCGG+TGG | - | chr2_1:46622949-46622968 | None:intergenic | 55.0% | |
| GTATACGCAGGGTTCGGGAA+GGG | - | chr2_1:46623091-46623110 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCGTATA+CGG | + | chr2_1:46623090-46623109 | Msa0209230:intron | 55.0% | |
| TTCCCGAACCCTGCGTATAC+GGG | + | chr2_1:46623091-46623110 | Msa0209230:intron | 55.0% | |
| ! | GAAGTCCGTGGTGGAGATGG+AGG | + | chr2_1:46621888-46621907 | Msa0209230:CDS | 60.0% |
| ! | AGCTCGAGTTTCGGGTGACC+AGG | + | chr2_1:46622227-46622246 | Msa0209230:CDS | 60.0% |
| GGGTGACCAGGAACCTAGCT+TGG | + | chr2_1:46622239-46622258 | Msa0209230:CDS | 60.0% | |
| CGTATACGCAGGGTTCGGGA+AGG | - | chr2_1:46623092-46623111 | None:intergenic | 60.0% | |
| CTCCCGTATACGCAGGGTTC+GGG | - | chr2_1:46623096-46623115 | None:intergenic | 60.0% | |
| GCTCCCGTATACGCAGGGTT+CGG | - | chr2_1:46623097-46623116 | None:intergenic | 60.0% | |
| CTTCGAGGGTGGCTTCGGCA+TGG | - | chr2_1:46621951-46621970 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 46621706 | 46623485 | 46621706 | ID=Msa0209230;Name=Msa0209230 |
| chr2_1 | mRNA | 46621706 | 46623485 | 46621706 | ID=Msa0209230-mRNA-1;Parent=Msa0209230;Name=Msa0209230-mRNA-1;_AED=0.09;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|465 |
| chr2_1 | exon | 46621706 | 46622989 | 46621706 | ID=Msa0209230-mRNA-1:exon:13311;Parent=Msa0209230-mRNA-1 |
| chr2_1 | exon | 46623372 | 46623485 | 46623372 | ID=Msa0209230-mRNA-1:exon:13312;Parent=Msa0209230-mRNA-1 |
| chr2_1 | CDS | 46621706 | 46622989 | 46621706 | ID=Msa0209230-mRNA-1:cds;Parent=Msa0209230-mRNA-1 |
| chr2_1 | CDS | 46623372 | 46623485 | 46623372 | ID=Msa0209230-mRNA-1:cds;Parent=Msa0209230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
