AlfalfaGEDB | Msa0212240

M. sativa cultivar zhongmu-4 / Msa0212240

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00314.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212240	XP_013464289.1	88.824	1029	76	3	1	990	5	1033	0.0	1880

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212240	sp\|Q39202\|RLK1_ARATH	42.680	806	376	16	250	988	32	818	0.0	613

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212240	A0A072V8H5	88.824	1029	76	3	1	990	5	1033	0.0	1880

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0212240	Msa0291240	0.812474	4.164225e-51	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212240	MtrunA17_Chr2g0311521	88.824	1029	76	3	1	990	5	1033	0.0	1880
Msa0212240	MtrunA17_Chr2g0311551	81.737	1013	145	6	13	990	20	1027	0.0	1690
Msa0212240	MtrunA17_Chr2g0311541	81.084	793	105	5	230	986	3	786	0.0	1294
Msa0212240	MtrunA17_Chr2g0311511	57.052	787	218	13	242	988	28	734	0.0	795
Msa0212240	MtrunA17_Chr8g0338471	47.066	784	357	17	250	981	29	806	0.0	674
Msa0212240	MtrunA17_Chr5g0399591	45.833	792	361	17	249	987	23	799	0.0	674
Msa0212240	MtrunA17_Chr8g0338501	46.801	797	362	16	240	981	48	837	0.0	673
Msa0212240	MtrunA17_Chr5g0399561	45.103	776	360	15	265	987	40	802	0.0	649
Msa0212240	MtrunA17_Chr8g0338531	45.682	718	355	13	297	982	30	744	0.0	562
Msa0212240	MtrunA17_Chr5g0394381	37.095	771	405	17	255	982	29	762	1.08e-151	468

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212240	AT5G24080.2	31.447	795	468	23	252	981	32	814	1.10e-104	347
Msa0212240	AT5G24080.3	32.761	699	426	21	315	981	1	687	2.04e-97	324
Msa0212240	AT5G24080.1	32.761	699	426	21	315	981	1	687	2.04e-97	324
Msa0212240	AT1G34300.1	31.904	793	433	31	255	988	31	775	2.48e-92	312
Msa0212240	AT4G32300.1	30.962	717	424	19	297	986	109	781	2.88e-86	295
Msa0212240	AT2G19130.1	31.356	708	395	24	313	981	123	778	4.72e-83	287
Msa0212240	AT5G35370.1	28.649	733	433	19	298	978	118	812	2.10e-74	263
Msa0212240	AT4G00340.1	30.736	693	395	20	315	971	118	761	1.34e-73	260
Msa0212240	AT1G75800.1	49.407	253	120	5	3	248	9	260	3.24e-73	245
Msa0212240	AT4G00340.2	30.713	687	382	22	315	971	118	740	3.84e-73	258

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Find 199 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTCATCTACAGGAGGA+TGG	0.524925	2_1:-54184406	Msa0212240:CDS
AAAGTTGATACTTATAGTTT+TGG	0.355959	2_1:-54182876	Msa0212240:CDS
AAATGACCAGTCCATTTGGC+AGG	0.547950	2_1:+54185728	None:intergenic
AAATGGACTGGTCATTTATG+GGG	0.629203	2_1:-54185722	Msa0212240:CDS
AACCATATAGATAGGGACTT+GGG	0.480733	2_1:+54182577	None:intergenic
AACCTGGCGTTATTTGAGGC+AGG	0.519758	2_1:+54185197	None:intergenic
AACGAATCCAGATTATCTTG+GGG	0.635850	2_1:-54183124	Msa0212240:CDS
AACTTCATCTACAGGAGGAT+GGG	0.507868	2_1:-54184405	Msa0212240:CDS
AAGAAGCTCCCACTCTCGTA+TGG	0.476272	2_1:-54183719	Msa0212240:CDS
AAGATTGAAATGAGTGTGAT+AGG	0.369938	2_1:-54183284	Msa0212240:CDS

Showing 1 to 10 of 199 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGTAACAAAAAATGGGA+CGG	-	chr2_1:54183186-54183205	Msa0212240:CDS	30.0%
AATTTCTTAGCATACACACT+TGG	+	chr2_1:54183298-54183317	None:intergenic	30.0%
ATCATCATACACATAGCTAT+AGG	+	chr2_1:54183341-54183360	None:intergenic	30.0%
AAGAAGAAACAGTTTGCAAA+TGG	+	chr2_1:54183498-54183517	None:intergenic	30.0%
ATTATGCAGCTTAGAATCAT+TGG	-	chr2_1:54183729-54183748	Msa0212240:CDS	30.0%
AATATCAATCTTGATCCCTT+AGG	+	chr2_1:54183930-54183949	None:intergenic	30.0%
ATTAAATGATTCTCGTGGTT+TGG	-	chr2_1:54183947-54183966	Msa0212240:CDS	30.0%
ACATCAGGTACAATTTCTAA+TGG	-	chr2_1:54184014-54184033	Msa0212240:CDS	30.0%
AATGGTCTAATGAATGATGA+TGG	-	chr2_1:54184032-54184051	Msa0212240:CDS	30.0%
TTCAACTCCATTACTTGATT+CGG	+	chr2_1:54184131-54184150	None:intergenic	30.0%

Showing 1 to 10 of 265 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	54182560	54186071	54182560	ID=Msa0212240;Name=Msa0212240
chr2_1	mRNA	54182560	54186071	54182560	ID=Msa0212240-mRNA-1;Parent=Msa0212240;Name=Msa0212240-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0\|0.33\|0\|1\|1\|1\|4\|0\|990
chr2_1	exon	54186026	54186071	54186026	ID=Msa0212240-mRNA-1:exon:15024;Parent=Msa0212240-mRNA-1
chr2_1	exon	54185200	54185878	54185200	ID=Msa0212240-mRNA-1:exon:15023;Parent=Msa0212240-mRNA-1
chr2_1	exon	54184730	54184893	54184730	ID=Msa0212240-mRNA-1:exon:15022;Parent=Msa0212240-mRNA-1
chr2_1	exon	54182560	54184643	54182560	ID=Msa0212240-mRNA-1:exon:15021;Parent=Msa0212240-mRNA-1
chr2_1	CDS	54186026	54186071	54186026	ID=Msa0212240-mRNA-1:cds;Parent=Msa0212240-mRNA-1
chr2_1	CDS	54185200	54185878	54185200	ID=Msa0212240-mRNA-1:cds;Parent=Msa0212240-mRNA-1
chr2_1	CDS	54184730	54184893	54184730	ID=Msa0212240-mRNA-1:cds;Parent=Msa0212240-mRNA-1
chr2_1	CDS	54182560	54184643	54182560	ID=Msa0212240-mRNA-1:cds;Parent=Msa0212240-mRNA-1

Gene Sequence

>Msa0212240

ATGTCATTTTTGTTCTTCTTGACACTTCATCTATCAATAACTGCAGCGGAATTCACTATAGTTAACAATTGCAACTACACAGTGTGGCCAGCTTCATATACAACCAATGGAAATGCAACATTATCAACCACCGGATTCATGTTAAAACCCGGTGAGAATTCAACAATCACAGCACCTGCCAAATGGACTGGTCATTTATGGGGACAGACTCTCTGCACAACAGACTCTGTCTCCAGAAACTTCTCCTGTGTCACAGGTGACTGTGGATCCGGCAAAGTAGCATGTGATGGCCGCAACGGATCAGCACCTGTGACACTGGCGGAATTCTATGTGGACAGTGTTAACAATCAAGATTCTTATGACATCAGCTTAGTAGACGGTTATAATGTCCCGATAGAAGTGGTTCCATTAGGTGGTTCTGGTAAGTGTAACAACACGGGTTGTCCTGCGGATTTGAACGCGGTGTGTCCAACGGAGTTGAAAGTAACAAAAAATGGGACGGTTGTGGCGTGCCAAGGTCCTTGTGCTGCTTTTAATTTGCAGTTTTTCTGTTGCGTTGGGAATCATTCAGGTCCAAATACTTGTGAGCCAAGTGTGTATGCTAAGAAATTCAAGACGACGTGCCCTCAAGCCTATAGCTATGTGTATGATGATCAGACCAGCACGTCCACTTGTCCGGCCACCGTTTATCACGTTGTTTTTTGTCCTGCCTCAAATAACGCCAGCTTAGAATCATTGGATCAAGGTGTGATTGTTGGTGAGTCACTTATTGCTGGCAGTGGCACAACTCGTTGGCTCTCTCCTTCAGGAGATTTCGCATTTGGATTTTACGAACTTCCAAATGAGCTTTTCTTGCTGGCTATATGGTATGACAAGATGCCATCATTTGGTTTAGAGTTATGGAGTTGGGATTTCACATCAGGTACAATTTCTAATGGTCTAATGAATGATGATGGAAACTTTCAATTGCGAGACAAAAATAATGTGACAATATGGGATAGTTTCAATCATCCTACTGACACATTAGTGCCGAATCAAGTAATGGAGTTGAATGGAAATCTTTCTTCACGACAAGGAGCGTTCAACTTCTCACAAGGAAGGTTTAAACTTCATCTACAGGAGGATGGGAATCTCGTTCTCAACCTTATAAATTTGCCAAGCAATTACAGTTACTATCCTTACTACAGTTATGGTACCAGTGATTCTAAGAATCAAACAAACGTTGGTCAGCGTTTGATATTTGACGAATCAGGTTTCTTATACATTGAGAAAAAAGGAGGGGATAACTTTTCTATCAGCAATCCAAATGGGACATTCTCAACGGATGATTTCTACTACAAAGCAACTATTAATTTTGATGGAGTTTTCACCATTGCATTTTACCCTAAAGATCCAAAGAGAGCACAAAGTTGGGTCATTGCAAAGACTATCCCAGAAAACATATGCTTGTATTCTACATTCACAGATGGCGAAGGTGTATGTGGTTTTAATAGCATTTGCACCCTTACAAATGATCAAAGGCCTAACTGTACGTGCCCAGTTGGATATTCTCCGATTGATTCAAATAACATGTATGTTGGTTGCATACCAAATTTCCAAGTTATTTGTCAAGCTGGTGCGAATTGGGATTCAAAAGATGATCTATATACGATGAAGGAGCTACCAAATACTGATTGGCCAAAATCTGATTATGAAATAATAAGCCCATCTAGTCTACAAGAATGCAAGGAATCATGTTTGCAAGATTGCTTGTGTGTTTTGGCTTCTTTCAACCAAAGTTCCTGTTGGAAGAAGAAGCTCCCACTCTCGTATGGGAGAAATGATCAAGGAGTTAAAGGAATTTCAATCTTGAAATTGATGAACAACGATCCTTTGTCATCCTTATCTGCCTTGTCAAATGGGAAGAAAGATCATGATACTTTGATCATTGTGATTTCAGTTCTTTTGGGAATCTCATTGTTTGTCATTTTAACGCTTCTTGGTGCAATATTTTTTGGGTTCCCCTACAACCTCAAGAAGATCAAAAGTAGTAGAACCAACAAAAGTGTTGTTGACAATAACTTGCGAAATTTTAGCTTTAAGGAAATTGTGGAAGCAACACATAATTTTAGAGAAGAATTGGGAAGAGGATCTTGTAGCATTGTCTACAAAGGAACAATAGAGATGACGATCAATGTGGCAGTTAAGAAACTAGACAAGCTGATCCAGGATAGTGATAAGGAATTTAAGATTGAAATGAGTGTGATAGGCCAAACTCATCATAGGAATCTTGTTCGTCTTCTTGGATATTGCAATGAAGGACAACATCGCATTTTGGTATATGAGTTAATGAGTAATGGCACTTTAGCAAGCTTTCTTTTCGCCTCTTTAAAACCAGATTGGAACCAACGAATCCAGATTATCTTGGGGATTGCAAGAGGTCTTGTTTACTTGCACGAGGGGTGTTGCACCCAAATCATCCATTGTGATATAAAGCCACAAAATATACTTCTAGATGATCAATACAATGCAAGAATTTCAGATTTTGGATTAGCAAAGTTATTGTTGATTAATCAAAGCCACACTGAAACTGGAATTAGAGGAACCAAAGGGTATGTTGCACCAGATTGGTTTAGGAGTGCACCAATAACCGCTAAAGTTGATACTTATAGTTTTGGTGTATTGTTGTTAGAGATCATTTGTTGTAGGAAAAATGTAGAGAAAAAAAATTTTACTGAAGAAAAAGGGATTTTAACTGATTGGGCTTATGATTGCTACAAGACTAAAAGACTCGACATTCTTCTCGAAAAAGATAACGAGGCTAGCAACGACATGATGTGCTTGGAAAAGTTTGTCATGATAGCTATTTGGTGCATTCAAGAAGATCCTTCTCTTAGGCCAACAATGAAGAATGTTTTACTGATGTTAGAAGGAATTGTTGAAGTAGCAGCTCCCCCAAGTCCCTATCTATATGGTTCTGTAAGTTGTAATTAA

Protein sequence

>Msa0212240

MSFLFFLTLHLSITAAEFTIVNNCNYTVWPASYTTNGNATLSTTGFMLKPGENSTITAPAKWTGHLWGQTLCTTDSVSRNFSCVTGDCGSGKVACDGRNGSAPVTLAEFYVDSVNNQDSYDISLVDGYNVPIEVVPLGGSGKCNNTGCPADLNAVCPTELKVTKNGTVVACQGPCAAFNLQFFCCVGNHSGPNTCEPSVYAKKFKTTCPQAYSYVYDDQTSTSTCPATVYHVVFCPASNNASLESLDQGVIVGESLIAGSGTTRWLSPSGDFAFGFYELPNELFLLAIWYDKMPSFGLELWSWDFTSGTISNGLMNDDGNFQLRDKNNVTIWDSFNHPTDTLVPNQVMELNGNLSSRQGAFNFSQGRFKLHLQEDGNLVLNLINLPSNYSYYPYYSYGTSDSKNQTNVGQRLIFDESGFLYIEKKGGDNFSISNPNGTFSTDDFYYKATINFDGVFTIAFYPKDPKRAQSWVIAKTIPENICLYSTFTDGEGVCGFNSICTLTNDQRPNCTCPVGYSPIDSNNMYVGCIPNFQVICQAGANWDSKDDLYTMKELPNTDWPKSDYEIISPSSLQECKESCLQDCLCVLASFNQSSCWKKKLPLSYGRNDQGVKGISILKLMNNDPLSSLSALSNGKKDHDTLIIVISVLLGISLFVILTLLGAIFFGFPYNLKKIKSSRTNKSVVDNNLRNFSFKEIVEATHNFREELGRGSCSIVYKGTIEMTINVAVKKLDKLIQDSDKEFKIEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFLFASLKPDWNQRIQIILGIARGLVYLHEGCCTQIIHCDIKPQNILLDDQYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKKNFTEEKGILTDWAYDCYKTKRLDILLEKDNEASNDMMCLEKFVMIAIWCIQEDPSLRPTMKNVLLMLEGIVEVAAPPSPYLYGSVSCN*