Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0222210 | XP_013465316.2 | 95.077 | 711 | 30 | 3 | 1 | 707 | 1 | 710 | 0.0 | 1330 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0222210 | sp|Q9LTA6|WAV3_ARATH | 32.969 | 640 | 342 | 25 | 23 | 624 | 79 | 669 | 6.43e-68 | 240 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0222210 | A0A396JLK8 | 95.077 | 711 | 30 | 3 | 1 | 707 | 1 | 710 | 0.0 | 1330 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0222210 | Msa0301480 | 0.812753 | 3.618088e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0222210 | MtrunA17_Chr2g0326911 | 95.077 | 711 | 30 | 3 | 1 | 707 | 1 | 710 | 0.0 | 1330 |
Msa0222210 | MtrunA17_Chr4g0028831 | 61.003 | 718 | 254 | 11 | 1 | 706 | 1 | 704 | 0.0 | 814 |
Msa0222210 | MtrunA17_Chr1g0199601 | 53.261 | 736 | 293 | 14 | 1 | 700 | 1 | 721 | 0.0 | 729 |
Msa0222210 | MtrunA17_Chr3g0141061 | 31.603 | 655 | 347 | 19 | 25 | 624 | 90 | 698 | 7.65e-86 | 287 |
Msa0222210 | MtrunA17_Chr5g0411491 | 28.522 | 575 | 350 | 13 | 68 | 636 | 123 | 642 | 2.05e-52 | 193 |
Msa0222210 | MtrunA17_Chr8g0366871 | 31.626 | 449 | 220 | 11 | 68 | 509 | 99 | 467 | 9.68e-48 | 178 |
Msa0222210 | MtrunA17_Chr2g0290981 | 28.855 | 454 | 230 | 14 | 68 | 506 | 91 | 466 | 4.11e-42 | 161 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0222210 | AT5G60710.1 | 56.980 | 702 | 272 | 15 | 1 | 692 | 1 | 682 | 0.0 | 717 |
Msa0222210 | AT2G38970.1 | 52.822 | 691 | 296 | 14 | 1 | 680 | 1 | 672 | 0.0 | 689 |
Msa0222210 | AT3G54780.1 | 50.000 | 716 | 304 | 15 | 1 | 705 | 1 | 673 | 0.0 | 634 |
Msa0222210 | AT1G08050.1 | 49.927 | 685 | 255 | 17 | 18 | 687 | 19 | 630 | 0.0 | 595 |
Msa0222210 | AT3G54780.4 | 44.972 | 716 | 298 | 15 | 1 | 705 | 50 | 680 | 0.0 | 536 |
Msa0222210 | AT3G54780.3 | 44.972 | 716 | 298 | 15 | 1 | 705 | 1 | 631 | 0.0 | 536 |
Msa0222210 | AT3G54780.2 | 44.972 | 716 | 297 | 16 | 1 | 705 | 1 | 630 | 0.0 | 532 |
Msa0222210 | AT3G54780.5 | 44.972 | 716 | 297 | 16 | 1 | 705 | 50 | 679 | 0.0 | 531 |
Msa0222210 | AT5G49665.1 | 32.969 | 640 | 342 | 25 | 23 | 624 | 79 | 669 | 6.54e-69 | 240 |
Msa0222210 | AT2G22680.1 | 30.185 | 593 | 309 | 19 | 56 | 622 | 118 | 631 | 2.27e-55 | 201 |
Msa0222210 | AT5G65683.1 | 30.598 | 585 | 318 | 21 | 67 | 621 | 135 | 661 | 3.40e-52 | 193 |
Msa0222210 | AT4G37890.1 | 28.344 | 628 | 319 | 19 | 58 | 639 | 155 | 697 | 2.40e-45 | 173 |
Msa0222210 | AT4G37890.2 | 28.299 | 629 | 320 | 19 | 56 | 639 | 127 | 669 | 5.48e-45 | 172 |
Find 171 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTCCATCTCTGAGATTTC+TGG | 0.149004 | 2_1:+71226165 | Msa0222210:CDS |
ATGCCCTTTGACATCTTTCT+AGG | 0.204633 | 2_1:-71226686 | None:intergenic |
CAGCCGTGGTACAAATATTA+TGG | 0.206889 | 2_1:-71226023 | None:intergenic |
AGAAGGTTGATCGGAGGTTT+TGG | 0.216050 | 2_1:-71222430 | None:intergenic |
TCCGCCTCCGGTGCTGTTTC+CGG | 0.216463 | 2_1:+71222477 | Msa0222210:CDS |
TCAGGAATGAGCTCTCATTT+AGG | 0.216817 | 2_1:+71226837 | Msa0222210:CDS |
TGAAGCTGAGGGAGTGATTC+AGG | 0.261473 | 2_1:+71226206 | Msa0222210:CDS |
ATTATTATTATGTTGTGTTA+TGG | 0.294496 | 2_1:-71222219 | None:intergenic |
ATCACATCTAATGTAAGATA+TGG | 0.296050 | 2_1:+71225217 | Msa0222210:CDS |
ATGCGTTCGCTCAGTGTATT+GGG | 0.300640 | 2_1:+71226229 | Msa0222210:CDS |
TACTGTATTGGTTCATCTTA+AGG | 0.301727 | 2_1:+71225594 | Msa0222210:CDS |
CAGGAATGAGCTCTCATTTA+GGG | 0.312405 | 2_1:+71226838 | Msa0222210:CDS |
AAAATACCAGTTCATGCATT+TGG | 0.324945 | 2_1:+71226111 | Msa0222210:CDS |
GTAGCAAAATGGAATCTAAA+TGG | 0.331334 | 2_1:+71222358 | Msa0222210:exon |
TTATTATTATGTTGTGTTAT+GGG | 0.339869 | 2_1:-71222218 | None:intergenic |
CCAGTTCATGCATTTGGTTT+TGG | 0.339898 | 2_1:+71226117 | Msa0222210:CDS |
TTTGAAACAGCTGAAACTTC+AGG | 0.345341 | 2_1:-71225550 | None:intergenic |
CGTTATTCCATCAAACAAAA+TGG | 0.345742 | 2_1:+71225622 | Msa0222210:CDS |
GCAATGTCTGTTCCACCATT+TGG | 0.346299 | 2_1:-71225907 | None:intergenic |
TCAGAATAACTTTACTGTAT+TGG | 0.348935 | 2_1:+71225582 | Msa0222210:CDS |
GATGCGTTCGCTCAGTGTAT+TGG | 0.355558 | 2_1:+71226228 | Msa0222210:CDS |
TGCAAGAATGGCTTCTATAA+AGG | 0.357597 | 2_1:+71226365 | Msa0222210:CDS |
CACTCCCTCAGCTTCAATAA+AGG | 0.363306 | 2_1:-71226199 | None:intergenic |
ATTTGTACCACGGCTGGTAT+TGG | 0.375696 | 2_1:+71226030 | Msa0222210:CDS |
TTTCATTGCATTCAAGCATA+TGG | 0.378551 | 2_1:-71225134 | None:intergenic |
CTCCCTCCCGTGACTATTGT+GGG | 0.385561 | 2_1:+71222290 | Msa0222210:five_prime_UTR |
GGAAGAGCTTATGTACTATC+AGG | 0.395695 | 2_1:+71226819 | Msa0222210:CDS |
CGACGTGTTTATGAAGAATC+TGG | 0.397253 | 2_1:+71226798 | Msa0222210:CDS |
AGGATTGAAGAAAGGGGTTA+AGG | 0.407262 | 2_1:+71225933 | Msa0222210:CDS |
TTCTCTTTCTGCTGAACTAA+AGG | 0.408085 | 2_1:+71226752 | Msa0222210:CDS |
GCTTGATCTCTAGCCACATT+AGG | 0.417939 | 2_1:-71226555 | None:intergenic |
TTGCTGAAGGATTGAAGAAA+GGG | 0.417942 | 2_1:+71225926 | Msa0222210:CDS |
GCCCTGTTTGCAGAGCAAAA+TGG | 0.423012 | 2_1:+71225251 | Msa0222210:CDS |
TCATCACTAGATTTCTCAAC+TGG | 0.425202 | 2_1:-71226441 | None:intergenic |
GCAGAAAGAGAAGTACATAA+TGG | 0.430963 | 2_1:-71226741 | None:intergenic |
CCTCCCTCCCGTGACTATTG+TGG | 0.435717 | 2_1:+71222289 | Msa0222210:five_prime_UTR |
CGACCTACTAAATCCTTTAG+TGG | 0.436730 | 2_1:+71226999 | Msa0222210:CDS |
ATTGCGTGTAATTAACGCTT+TGG | 0.437595 | 2_1:+71225882 | Msa0222210:CDS |
CTGTATCAATAGAAGTAGAT+AGG | 0.440436 | 2_1:+71226577 | Msa0222210:CDS |
CATTGTTAGTCAATGTACTT+TGG | 0.441078 | 2_1:-71226344 | None:intergenic |
TCTTTGTTGCCGACCACTAA+AGG | 0.442019 | 2_1:-71227012 | None:intergenic |
CGAAAACTCAAACTTGCTCT+TGG | 0.442562 | 2_1:+71222381 | Msa0222210:CDS |
TGTCAGCCATGGAAGGAGTT+TGG | 0.444144 | 2_1:-71226917 | None:intergenic |
CCAAAACCAAATGCATGAAC+TGG | 0.449011 | 2_1:-71226117 | None:intergenic |
AGCCGTGGTACAAATATTAT+GGG | 0.454221 | 2_1:-71226022 | None:intergenic |
CGGAGTAGAGGGACGGCGAC+CGG | 0.455656 | 2_1:-71222496 | None:intergenic |
GAGGAAGGTGTCGGAGTAGA+GGG | 0.460036 | 2_1:-71222507 | None:intergenic |
TAGATGTGATGCATTGGAAA+TGG | 0.463066 | 2_1:-71225204 | None:intergenic |
ACCGGAAACAGCACCGGAGG+CGG | 0.471968 | 2_1:-71222478 | None:intergenic |
GACATAAGTGGTAGCATGAC+TGG | 0.473704 | 2_1:+71225712 | Msa0222210:CDS |
TCATCGTCGTCAAAGATAGT+TGG | 0.475676 | 2_1:-71225439 | None:intergenic |
CCTGACCAGGTGTCACCTCT+TGG | 0.476199 | 2_1:-71225328 | None:intergenic |
ATTGACTAACAATGCAAGAA+TGG | 0.476863 | 2_1:+71226353 | Msa0222210:CDS |
GAATGATGCTGCGCGACAGC+AGG | 0.479092 | 2_1:+71225858 | Msa0222210:CDS |
GTGTCCTCACAAGAATGGTC+TGG | 0.482856 | 2_1:-71226953 | None:intergenic |
TCACATCTAATGTAAGATAT+GGG | 0.483345 | 2_1:+71225218 | Msa0222210:CDS |
TGCTGAACTAAAGGAGATGC+AGG | 0.485753 | 2_1:+71226761 | Msa0222210:CDS |
ATCCTCCTCTTCATCCTCCA+AGG | 0.491259 | 2_1:+71222551 | Msa0222210:CDS |
GATCGTCTCTCATCCGCCTC+CGG | 0.491269 | 2_1:+71222465 | Msa0222210:CDS |
AACTCCTTCCATGGCTGACA+TGG | 0.492956 | 2_1:+71226920 | Msa0222210:CDS |
TGACGACGATGATGAAGTCT+TGG | 0.493855 | 2_1:+71225450 | Msa0222210:CDS |
CAACTTAGTTCAGTAAAAGC+AGG | 0.495301 | 2_1:+71226315 | Msa0222210:CDS |
CATAATATTTGTACCACGGC+TGG | 0.499402 | 2_1:+71226024 | Msa0222210:CDS |
CTCTTGGTTGAGAGATGTCA+TGG | 0.502976 | 2_1:-71225312 | None:intergenic |
CTTTCTTCCTCGCGACAGAA+TGG | 0.505139 | 2_1:+71225364 | Msa0222210:CDS |
GGAGGATGAAGAGGAGGATG+AGG | 0.507063 | 2_1:-71222547 | None:intergenic |
GGAGGAAGGTGTCGGAGTAG+AGG | 0.507967 | 2_1:-71222508 | None:intergenic |
AAAATGGCCTGCCCCTGCCC+TGG | 0.508478 | 2_1:-71225157 | None:intergenic |
GGATGAGGAGAGACGGAGAC+CGG | 0.509197 | 2_1:-71222532 | None:intergenic |
TTACATTAGATGTGATGCAT+TGG | 0.513211 | 2_1:-71225210 | None:intergenic |
AAGATCTACATGTAGAAGTT+CGG | 0.513674 | 2_1:+71226274 | Msa0222210:CDS |
TGCTTGAATGCAATGAAACC+AGG | 0.514205 | 2_1:+71225139 | Msa0222210:CDS |
AACGCTTTGGTTCCAAATGG+TGG | 0.514397 | 2_1:+71225895 | Msa0222210:CDS |
CCACAATAGTCACGGGAGGG+AGG | 0.517625 | 2_1:-71222289 | None:intergenic |
AATGAAACCAGGGCAGGGGC+AGG | 0.522072 | 2_1:+71225150 | Msa0222210:CDS |
AGCTACTGAGGCAATGGCTG+AGG | 0.522647 | 2_1:+71226617 | Msa0222210:CDS |
CCAAGAGGTGACACCTGGTC+AGG | 0.524173 | 2_1:+71225328 | Msa0222210:CDS |
CGCGACAGAATGGTTCAGTT+CGG | 0.524264 | 2_1:+71225374 | Msa0222210:CDS |
GGTATCATGTTACTAACTGA+TGG | 0.525118 | 2_1:+71225991 | Msa0222210:CDS |
CACAATAGTCACGGGAGGGA+GGG | 0.525170 | 2_1:-71222288 | None:intergenic |
AAGAGGAGGATGAGGAGAGA+CGG | 0.528219 | 2_1:-71222539 | None:intergenic |
ACTCCGACACCTTCCTCCTC+CGG | 0.530734 | 2_1:+71222513 | Msa0222210:CDS |
GGAGAGACGGAGACCGGAGG+AGG | 0.535327 | 2_1:-71222526 | None:intergenic |
TTCGCCGTTAGTACGATGAA+TGG | 0.535371 | 2_1:-71226082 | None:intergenic |
CGACCACTAAAGGATTTAGT+AGG | 0.535697 | 2_1:-71227002 | None:intergenic |
AATAGTCACGGGAGGGAGGG+AGG | 0.537853 | 2_1:-71222285 | None:intergenic |
CGATCGGAGATGGAGGAAGA+AGG | 0.538906 | 2_1:-71222447 | None:intergenic |
ACGGCGACCGGAAACAGCAC+CGG | 0.539715 | 2_1:-71222484 | None:intergenic |
TGTCCTAGAAAGATGTCAAA+GGG | 0.539877 | 2_1:+71226683 | Msa0222210:CDS |
GAATGCAATGAAACCAGGGC+AGG | 0.540422 | 2_1:+71225144 | Msa0222210:CDS |
TGTCCTCACAAGAATGGTCT+GGG | 0.541184 | 2_1:-71226952 | None:intergenic |
ATTGCTGAAGGATTGAAGAA+AGG | 0.541474 | 2_1:+71225925 | Msa0222210:CDS |
CCATCAAACAAAATGGTGGC+AGG | 0.542831 | 2_1:+71225629 | Msa0222210:CDS |
TTGGTACGCACGCACAAAGC+TGG | 0.543489 | 2_1:-71226898 | None:intergenic |
GATGGAGGAAGAAGGTTGAT+CGG | 0.545533 | 2_1:-71222439 | None:intergenic |
ATTAACGCTTTGGTTCCAAA+TGG | 0.547441 | 2_1:+71225892 | Msa0222210:CDS |
TTAGTACGATGAATGGAGTT+CGG | 0.551591 | 2_1:-71226075 | None:intergenic |
GTCGTAGAGGGAAGATGCGA+CGG | 0.555460 | 2_1:-71225831 | None:intergenic |
TGCGTACCAAACTCCTTCCA+TGG | 0.555636 | 2_1:+71226911 | Msa0222210:CDS |
TCATAGCATAGAAAATAGAA+TGG | 0.556266 | 2_1:+71225513 | Msa0222210:CDS |
GCCTCCAGAAATCTCAGAGA+TGG | 0.557635 | 2_1:-71226169 | None:intergenic |
CTACTAAATCCTTTAGTGGT+CGG | 0.561787 | 2_1:+71227003 | Msa0222210:CDS |
GAAACTATTTCTGCTCAAGC+CGG | 0.565601 | 2_1:+71226714 | Msa0222210:CDS |
AGAAGTACATAATGGATCAC+CGG | 0.567531 | 2_1:-71226733 | None:intergenic |
GAAGAAAGAGATGGTAGTAA+TGG | 0.568105 | 2_1:-71222313 | None:intergenic |
CTCAACCAAGAGGTGACACC+TGG | 0.568428 | 2_1:+71225323 | Msa0222210:CDS |
CTGTCCTAGAAAGATGTCAA+AGG | 0.569794 | 2_1:+71226682 | Msa0222210:CDS |
AGACGGAGACCGGAGGAGGA+AGG | 0.571440 | 2_1:-71222522 | None:intergenic |
TGAGAGACGATCGGAGATGG+AGG | 0.571484 | 2_1:-71222454 | None:intergenic |
ACGTGAAACCATGTCAGCCA+TGG | 0.572051 | 2_1:-71226928 | None:intergenic |
CATCATTCATCCGTCGTAGA+GGG | 0.573178 | 2_1:-71225843 | None:intergenic |
GTCACAGTTCTAGACATAAG+TGG | 0.575659 | 2_1:+71225700 | Msa0222210:CDS |
CACAAAGCTGGTGGAGTCTG+TGG | 0.575874 | 2_1:-71226886 | None:intergenic |
ACTTCAAGCTACTGAGGCAA+TGG | 0.575955 | 2_1:+71226611 | Msa0222210:CDS |
ATAGTCACGGGAGGGAGGGA+GGG | 0.577506 | 2_1:-71222284 | None:intergenic |
GGAGGAAGAAGGTTGATCGG+AGG | 0.580586 | 2_1:-71222436 | None:intergenic |
GGATGAGAGACGATCGGAGA+TGG | 0.581101 | 2_1:-71222457 | None:intergenic |
ATGCAATGAAACCAGGGCAG+GGG | 0.581853 | 2_1:+71225146 | Msa0222210:CDS |
GGGCAAAGAGCAACTGCAAG+AGG | 0.582216 | 2_1:+71226858 | Msa0222210:CDS |
ACCACGGCTGGTATTGGAGA+AGG | 0.582988 | 2_1:+71226036 | Msa0222210:CDS |
GCGACCGGAAACAGCACCGG+AGG | 0.583644 | 2_1:-71222481 | None:intergenic |
GCATCATTCATCCGTCGTAG+AGG | 0.583839 | 2_1:-71225844 | None:intergenic |
GCAAACCTTGGAGGATGAAG+AGG | 0.584003 | 2_1:-71222556 | None:intergenic |
AACTCCATTCATCGTACTAA+CGG | 0.584465 | 2_1:+71226078 | Msa0222210:CDS |
TGCGTTCGCTCAGTGTATTG+GGG | 0.589162 | 2_1:+71226230 | Msa0222210:CDS |
GATGAAAATGCAAACCTTGG+AGG | 0.592311 | 2_1:-71222565 | None:intergenic |
CAATAGAAGTAGATAGGCAA+AGG | 0.593503 | 2_1:+71226583 | Msa0222210:CDS |
TCGTAGAGGGAAGATGCGAC+GGG | 0.594023 | 2_1:-71225830 | None:intergenic |
TCTTCGTAGTATACCTGACC+AGG | 0.594250 | 2_1:-71225341 | None:intergenic |
AGAATGGCTTCTATAAAGGT+AGG | 0.594606 | 2_1:+71226369 | Msa0222210:CDS |
ATTCATCGTACTAACGGCGA+AGG | 0.595421 | 2_1:+71226084 | Msa0222210:CDS |
AACCTTGGAGGATGAAGAGG+AGG | 0.595748 | 2_1:-71222553 | None:intergenic |
AATGATAGAAAGACGGTCTG+AGG | 0.603147 | 2_1:-71225791 | None:intergenic |
TCCATCTCTGAGATTTCTGG+AGG | 0.604262 | 2_1:+71226168 | Msa0222210:CDS |
GCACGAGAGGTCTCAACTGA+AGG | 0.604673 | 2_1:-71225664 | None:intergenic |
AGAGATGTCATGGGACACAT+TGG | 0.606263 | 2_1:-71225302 | None:intergenic |
TAATGGCCCACAATAGTCAC+GGG | 0.608670 | 2_1:-71222296 | None:intergenic |
TTGTGGTGTCCTCACAAGAA+TGG | 0.610139 | 2_1:-71226958 | None:intergenic |
GCGTTCGCTCAGTGTATTGG+GGG | 0.613283 | 2_1:+71226231 | Msa0222210:CDS |
AAGATCAACTTGAGCACGAG+AGG | 0.615751 | 2_1:-71225677 | None:intergenic |
ACCTTCTCCAATACCAGCCG+TGG | 0.617152 | 2_1:-71226037 | None:intergenic |
AATGCAATGAAACCAGGGCA+GGG | 0.618792 | 2_1:+71225145 | Msa0222210:CDS |
GAATAGACTTCAAGCTACTG+AGG | 0.619555 | 2_1:+71226605 | Msa0222210:CDS |
AGACCGGAGGAGGAAGGTGT+CGG | 0.621586 | 2_1:-71222516 | None:intergenic |
AACTGAACCATTCTGTCGCG+AGG | 0.621728 | 2_1:-71225371 | None:intergenic |
GAAACCATGTCAGCCATGGA+AGG | 0.623228 | 2_1:-71226924 | None:intergenic |
CCACTGGATTCTTCCATCGA+CGG | 0.623669 | 2_1:-71225966 | None:intergenic |
GTAATGGCCCACAATAGTCA+CGG | 0.626828 | 2_1:-71222297 | None:intergenic |
TGAGGAGAGACGGAGACCGG+AGG | 0.628605 | 2_1:-71222529 | None:intergenic |
GGCCCACAATAGTCACGGGA+GGG | 0.641441 | 2_1:-71222292 | None:intergenic |
GTACGCACGCACAAAGCTGG+TGG | 0.645933 | 2_1:-71226895 | None:intergenic |
GGTGGAACAGACATTGCTGA+AGG | 0.649838 | 2_1:+71225913 | Msa0222210:CDS |
TATTCCATCAAACAAAATGG+TGG | 0.653715 | 2_1:+71225625 | Msa0222210:CDS |
AGAACACAATGATAGAAAGA+CGG | 0.655615 | 2_1:-71225798 | None:intergenic |
AAGGTGTCGGAGTAGAGGGA+CGG | 0.657455 | 2_1:-71222503 | None:intergenic |
GTTCCCAGACCATTCTTGTG+AGG | 0.658249 | 2_1:+71226949 | Msa0222210:CDS |
GAAGATTCAGAGACCTAATG+TGG | 0.658620 | 2_1:+71226542 | Msa0222210:CDS |
TGGCCCACAATAGTCACGGG+AGG | 0.659674 | 2_1:-71222293 | None:intergenic |
TACCCATAATATTTGTACCA+CGG | 0.660942 | 2_1:+71226020 | Msa0222210:CDS |
GCTTGAATGCAATGAAACCA+GGG | 0.663531 | 2_1:+71225140 | Msa0222210:CDS |
CGTCGATGGAAGAATCCAGT+GGG | 0.666439 | 2_1:+71225967 | Msa0222210:CDS |
CCGTCGATGGAAGAATCCAG+TGG | 0.666461 | 2_1:+71225966 | Msa0222210:CDS |
TGCTGAAGGATTGAAGAAAG+GGG | 0.668132 | 2_1:+71225927 | Msa0222210:CDS |
AAAGCGACGGAAGAAAGAGA+TGG | 0.672654 | 2_1:-71222322 | None:intergenic |
AGTAACATGATACCACCCAC+TGG | 0.674632 | 2_1:-71225982 | None:intergenic |
GTCGCATCTTCCCTCTACGA+CGG | 0.674767 | 2_1:+71225833 | Msa0222210:CDS |
TCTTGGTTGAGAGATGTCAT+GGG | 0.675146 | 2_1:-71225311 | None:intergenic |
CGATGGAAGAATCCAGTGGG+TGG | 0.680485 | 2_1:+71225970 | Msa0222210:CDS |
GGAGGCGGATGAGAGACGAT+CGG | 0.682863 | 2_1:-71222463 | None:intergenic |
GCTAGAGTCGAAGCAGAACG+TGG | 0.688623 | 2_1:+71226639 | Msa0222210:CDS |
CATGACATCTCTCAACCAAG+AGG | 0.689767 | 2_1:+71225313 | Msa0222210:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAAATTAATAAAATGTAA+TGG | - | chr2_1:71223671-71223690 | None:intergenic | 10.0% |
!!! | TATTTTATTTTATTTCATCT+TGG | + | chr2_1:71224957-71224976 | Msa0222210:intron | 10.0% |
!! | TTATTATTATGTTGTGTTAT+GGG | - | chr2_1:71222221-71222240 | None:intergenic | 15.0% |
!! | ATTATTATTATGTTGTGTTA+TGG | - | chr2_1:71222222-71222241 | None:intergenic | 15.0% |
!!! | ATGTTGTTGTTTTAATTTTA+GGG | + | chr2_1:71222771-71222790 | Msa0222210:intron | 15.0% |
!!! | ATTTTTTGTATTTTGATATG+TGG | + | chr2_1:71223247-71223266 | Msa0222210:intron | 15.0% |
!!! | TTTTTTGTATTTTGATATGT+GGG | + | chr2_1:71223248-71223267 | Msa0222210:intron | 15.0% |
!!! | TTAATAAAATGTAATGGAAA+GGG | - | chr2_1:71223665-71223684 | None:intergenic | 15.0% |
!!! | ATTAATAAAATGTAATGGAA+AGG | - | chr2_1:71223666-71223685 | None:intergenic | 15.0% |
!! | ATAAAAATATCATCAAAACA+AGG | - | chr2_1:71223733-71223752 | None:intergenic | 15.0% |
!!! | AAAAAATTGTTGTGATTTTT+TGG | + | chr2_1:71224541-71224560 | Msa0222210:intron | 15.0% |
!!! | CTAATTTGCATGTAATTATT+AGG | + | chr2_1:71222668-71222687 | Msa0222210:intron | 20.0% |
!!! | TAATTATTAGGTTGTAATCA+CGG | + | chr2_1:71222680-71222699 | Msa0222210:intron | 20.0% |
!!! | GATGTTGTTGTTTTAATTTT+AGG | + | chr2_1:71222770-71222789 | Msa0222210:intron | 20.0% |
!!! | TTTAATTTTAGGGATAGTAA+TGG | + | chr2_1:71222781-71222800 | Msa0222210:intron | 20.0% |
!!! | TGGTTTCATTATTCATTTTA+TGG | + | chr2_1:71222837-71222856 | Msa0222210:intron | 20.0% |
!!! | TTTCATTATTCATTTTATGG+CGG | + | chr2_1:71222840-71222859 | Msa0222210:intron | 20.0% |
!!! | AGAATGTCATTTTTATAGAT+TGG | + | chr2_1:71223029-71223048 | Msa0222210:intron | 20.0% |
!! | AATCAAATCACAAATATTTG+TGG | - | chr2_1:71223069-71223088 | None:intergenic | 20.0% |
!! | ACAAATATTTGTGATTTGAT+TGG | + | chr2_1:71223068-71223087 | Msa0222210:intron | 20.0% |
!! | CCTCAAAATTAAATTAACTA+TGG | - | chr2_1:71223154-71223173 | None:intergenic | 20.0% |
!!! | CCATAGTTAATTTAATTTTG+AGG | + | chr2_1:71223151-71223170 | Msa0222210:intron | 20.0% |
!! | GTAAATATAAAAGAGTTGAA+TGG | + | chr2_1:71223288-71223307 | Msa0222210:intron | 20.0% |
!! | AATAATGTAAAAGAGTTGAA+TGG | + | chr2_1:71223311-71223330 | Msa0222210:intron | 20.0% |
!! | ATTACAAATAAGAGACATTT+AGG | + | chr2_1:71223446-71223465 | Msa0222210:intron | 20.0% |
!!! | ATTTGCAATTTTGATACATT+TGG | + | chr2_1:71223474-71223493 | Msa0222210:intron | 20.0% |
!! | ATTTCATCCATATTTCATTT+GGG | - | chr2_1:71223550-71223569 | None:intergenic | 20.0% |
!! | AACTTAATAAGTTGTAGATT+TGG | + | chr2_1:71223926-71223945 | Msa0222210:intron | 20.0% |
!!! | TTTTCCTTCTTTTAAAAGTT+TGG | + | chr2_1:71224356-71224375 | Msa0222210:intron | 20.0% |
!! | AAATTGTTACAAAAGCTTAA+TGG | - | chr2_1:71224779-71224798 | None:intergenic | 20.0% |
!! | GTTATCTAAATTACATTCTA+AGG | + | chr2_1:71224829-71224848 | Msa0222210:intron | 20.0% |
!! | AATTATTAGGTTGTAATCAC+GGG | + | chr2_1:71222681-71222700 | Msa0222210:intron | 25.0% |
!! | TAGACAACTAGTTTCATAAA+GGG | - | chr2_1:71222909-71222928 | None:intergenic | 25.0% |
!!! | AATGATGTTTTTTACTCCAT+AGG | - | chr2_1:71223186-71223205 | None:intergenic | 25.0% |
!!! | ACATTGAGACAAGTTATTTT+AGG | + | chr2_1:71223378-71223397 | Msa0222210:intron | 25.0% |
! | TTGCAATTTCAGTATATTCT+AGG | - | chr2_1:71223404-71223423 | None:intergenic | 25.0% |
! | CATTTCATCCATATTTCATT+TGG | - | chr2_1:71223551-71223570 | None:intergenic | 25.0% |
! | ACGTAATTAGACATGTAATA+GGG | + | chr2_1:71223967-71223986 | Msa0222210:intron | 25.0% |
! | TTGTATTTATCTATGGATAC+AGG | + | chr2_1:71224213-71224232 | Msa0222210:intron | 25.0% |
!! | CTAAATTACATTCTAAGGAA+AGG | + | chr2_1:71224834-71224853 | Msa0222210:intron | 25.0% |
! | TTAGATTATATCAACATGGT+TGG | + | chr2_1:71224870-71224889 | Msa0222210:intron | 25.0% |
! | TTTGAATGATATCATCTACA+TGG | + | chr2_1:71224931-71224950 | Msa0222210:intron | 25.0% |
!!! | TTTTATTTCATCTTGGTTTG+TGG | + | chr2_1:71224964-71224983 | Msa0222210:intron | 25.0% |
!!! | TTTATTTCATCTTGGTTTGT+GGG | + | chr2_1:71224965-71224984 | Msa0222210:intron | 25.0% |
!!! | AGTTTTGTTTAATGTCTACT+AGG | + | chr2_1:71225002-71225021 | Msa0222210:intron | 25.0% |
! | AAGAAAGAAAGAAAAAAGTG+AGG | - | chr2_1:71225091-71225110 | None:intergenic | 25.0% |
!! | TTCTTTCTTTTACATTCTGT+AGG | + | chr2_1:71225102-71225121 | Msa0222210:intron | 25.0% |
!! | TCTTTCTTTTACATTCTGTA+GGG | + | chr2_1:71225103-71225122 | Msa0222210:intron | 25.0% |
! | ATCACATCTAATGTAAGATA+TGG | + | chr2_1:71225217-71225236 | Msa0222210:CDS | 25.0% |
! | TCACATCTAATGTAAGATAT+GGG | + | chr2_1:71225218-71225237 | Msa0222210:CDS | 25.0% |
! | TCATAGCATAGAAAATAGAA+TGG | + | chr2_1:71225513-71225532 | Msa0222210:CDS | 25.0% |
! | TCAGAATAACTTTACTGTAT+TGG | + | chr2_1:71225582-71225601 | Msa0222210:CDS | 25.0% |
!!! | ATTTTGTTTGATGGAATAAC+GGG | - | chr2_1:71225623-71225642 | None:intergenic | 25.0% |
!!! | CATTTTGTTTGATGGAATAA+CGG | - | chr2_1:71225624-71225643 | None:intergenic | 25.0% |
!! | AGAATATTTTCAGATGATTG+TGG | - | chr2_1:71226978-71226997 | None:intergenic | 25.0% |
! | ATTCCATTTTGCTACGAAAA+TGG | - | chr2_1:71222353-71222372 | None:intergenic | 30.0% |
GTAGCAAAATGGAATCTAAA+TGG | + | chr2_1:71222358-71222377 | Msa0222210:exon | 30.0% | |
ATTGATGAAAATGCAAACCT+TGG | - | chr2_1:71222571-71222590 | None:intergenic | 30.0% | |
! | CTAGACAACTAGTTTCATAA+AGG | - | chr2_1:71222910-71222929 | None:intergenic | 30.0% |
! | GTCTAGTTTATGTGAAAAAG+TGG | + | chr2_1:71222924-71222943 | Msa0222210:intron | 30.0% |
AGTGGTTGTGTAATTTACTA+AGG | + | chr2_1:71222942-71222961 | Msa0222210:intron | 30.0% | |
GTGGTTGTGTAATTTACTAA+GGG | + | chr2_1:71222943-71222962 | Msa0222210:intron | 30.0% | |
! | GTTTAATTTCTATGCACTGA+CGG | + | chr2_1:71222965-71222984 | Msa0222210:intron | 30.0% |
AGAGTTGAATGGAATAAAGT+AGG | + | chr2_1:71223322-71223341 | Msa0222210:intron | 30.0% | |
GAGTTGAATGGAATAAAGTA+GGG | + | chr2_1:71223323-71223342 | Msa0222210:intron | 30.0% | |
TGTAATTAAACAGACACTTG+AGG | - | chr2_1:71223432-71223451 | None:intergenic | 30.0% | |
CACATATTCAAGGATCAAAA+TGG | + | chr2_1:71223517-71223536 | Msa0222210:intron | 30.0% | |
ATGGATGAAATGTAATAGAG+TGG | + | chr2_1:71223559-71223578 | Msa0222210:intron | 30.0% | |
!! | AATGACATGAACTTGTTGAT+TGG | + | chr2_1:71223592-71223611 | Msa0222210:intron | 30.0% |
!! | GAACTTGTTGATTGGAAAAT+TGG | + | chr2_1:71223600-71223619 | Msa0222210:intron | 30.0% |
! | TGTTGATTGGAAAATTGGAA+TGG | + | chr2_1:71223605-71223624 | Msa0222210:intron | 30.0% |
! | TAGTAGAAAAGTGTGAATGA+AGG | + | chr2_1:71223690-71223709 | Msa0222210:intron | 30.0% |
! | TACCATTTTCAGCAAAGTAA+AGG | - | chr2_1:71223826-71223845 | None:intergenic | 30.0% |
TTTACTTTGCTGAAAATGGT+AGG | + | chr2_1:71223825-71223844 | Msa0222210:intron | 30.0% | |
AAAGAAAAAAAGTCAGCGTT+TGG | - | chr2_1:71223897-71223916 | None:intergenic | 30.0% | |
TAATAAGTTGTAGATTTGGC+AGG | + | chr2_1:71223930-71223949 | Msa0222210:intron | 30.0% | |
AATAAGTTGTAGATTTGGCA+GGG | + | chr2_1:71223931-71223950 | Msa0222210:intron | 30.0% | |
TGTCTAATTACGTCAACTAT+AGG | - | chr2_1:71223960-71223979 | None:intergenic | 30.0% | |
GACGTAATTAGACATGTAAT+AGG | + | chr2_1:71223966-71223985 | Msa0222210:intron | 30.0% | |
AATTAGACATGTAATAGGGA+TGG | + | chr2_1:71223971-71223990 | Msa0222210:intron | 30.0% | |
ATTAGACATGTAATAGGGAT+GGG | + | chr2_1:71223972-71223991 | Msa0222210:intron | 30.0% | |
CAAAAACCAGTGCATAAAAA+AGG | - | chr2_1:71224129-71224148 | None:intergenic | 30.0% | |
!!! | TTTTTATGCACTGGTTTTTG+TGG | + | chr2_1:71224129-71224148 | Msa0222210:intron | 30.0% |
! | GCGACTTTTGTATTTATCTA+TGG | + | chr2_1:71224206-71224225 | Msa0222210:intron | 30.0% |
CAGTCATAATTGAAAAAAGG+GGG | - | chr2_1:71224755-71224774 | None:intergenic | 30.0% | |
CCAGTCATAATTGAAAAAAG+GGG | - | chr2_1:71224756-71224775 | None:intergenic | 30.0% | |
GCCAGTCATAATTGAAAAAA+GGG | - | chr2_1:71224757-71224776 | None:intergenic | 30.0% | |
! | CTACTAAGCATTGTTGAATA+AGG | + | chr2_1:71224895-71224914 | Msa0222210:intron | 30.0% |
TTTCATTGCATTCAAGCATA+TGG | - | chr2_1:71225137-71225156 | None:intergenic | 30.0% | |
AGAACATTCTGCAGTAAAAA+TGG | - | chr2_1:71225176-71225195 | None:intergenic | 30.0% | |
TTACATTAGATGTGATGCAT+TGG | - | chr2_1:71225213-71225232 | None:intergenic | 30.0% | |
!! | TTGGATGCAGTATTTTGAAA+AGG | - | chr2_1:71225286-71225305 | None:intergenic | 30.0% |
!! | TACTGTATTGGTTCATCTTA+AGG | + | chr2_1:71225594-71225613 | Msa0222210:CDS | 30.0% |
!! | TTTTGTTTGATGGAATAACG+GGG | - | chr2_1:71225622-71225641 | None:intergenic | 30.0% |
CGTTATTCCATCAAACAAAA+TGG | + | chr2_1:71225622-71225641 | Msa0222210:CDS | 30.0% | |
TATTCCATCAAACAAAATGG+TGG | + | chr2_1:71225625-71225644 | Msa0222210:CDS | 30.0% | |
AGAACACAATGATAGAAAGA+CGG | - | chr2_1:71225801-71225820 | None:intergenic | 30.0% | |
TACCCATAATATTTGTACCA+CGG | + | chr2_1:71226020-71226039 | Msa0222210:CDS | 30.0% | |
AAAATACCAGTTCATGCATT+TGG | + | chr2_1:71226111-71226130 | Msa0222210:CDS | 30.0% | |
! | ATTTTCCTTTATTGAAGCTG+AGG | + | chr2_1:71226194-71226213 | Msa0222210:CDS | 30.0% |
! | TTTTCCTTTATTGAAGCTGA+GGG | + | chr2_1:71226195-71226214 | Msa0222210:CDS | 30.0% |
AAGATCTACATGTAGAAGTT+CGG | + | chr2_1:71226274-71226293 | Msa0222210:CDS | 30.0% | |
CATTGTTAGTCAATGTACTT+TGG | - | chr2_1:71226347-71226366 | None:intergenic | 30.0% | |
ATTGACTAACAATGCAAGAA+TGG | + | chr2_1:71226353-71226372 | Msa0222210:CDS | 30.0% | |
CTGTATCAATAGAAGTAGAT+AGG | + | chr2_1:71226577-71226596 | Msa0222210:CDS | 30.0% | |
GAAGAAAGAGATGGTAGTAA+TGG | - | chr2_1:71222316-71222335 | None:intergenic | 35.0% | |
GAAAATGGTTGAAAAAGCGA+CGG | - | chr2_1:71222338-71222357 | None:intergenic | 35.0% | |
! | CAACCATTTTCGTAGCAAAA+TGG | + | chr2_1:71222347-71222366 | Msa0222210:exon | 35.0% |
!! | CTCTTCATTTTTCACTGCTT+AGG | + | chr2_1:71222602-71222621 | Msa0222210:intron | 35.0% |
GTGATTGTGATGTGTTGTAT+TGG | + | chr2_1:71222817-71222836 | Msa0222210:intron | 35.0% | |
! | CATTATTCATTTTATGGCGG+TGG | + | chr2_1:71222843-71222862 | Msa0222210:intron | 35.0% |
TATACACAGACAGTGTACTA+TGG | - | chr2_1:71223131-71223150 | None:intergenic | 35.0% | |
CACAAGTTCAGGAACTAAAA+TGG | - | chr2_1:71223356-71223375 | None:intergenic | 35.0% | |
ATGTGAGACACTATCATTAC+AGG | - | chr2_1:71223502-71223521 | None:intergenic | 35.0% | |
GATAGTGTCTCACATATTCA+AGG | + | chr2_1:71223507-71223526 | Msa0222210:intron | 35.0% | |
TTGCTTGCCCAAATGAAATA+TGG | + | chr2_1:71223540-71223559 | Msa0222210:intron | 35.0% | |
TGTAATAGAGTGGAAGAGAT+TGG | + | chr2_1:71223569-71223588 | Msa0222210:intron | 35.0% | |
TGATTGGAAAATTGGAATGG+AGG | + | chr2_1:71223608-71223627 | Msa0222210:intron | 35.0% | |
CACCTTTACTTTGCTGAAAA+TGG | + | chr2_1:71223821-71223840 | Msa0222210:intron | 35.0% | |
! | CATACATATTGATGGCATCA+AGG | - | chr2_1:71223870-71223889 | None:intergenic | 35.0% |
! | TTGGTGGTCATACATATTGA+TGG | - | chr2_1:71223878-71223897 | None:intergenic | 35.0% |
!!! | TTCCATCCTTTTTTATGCAC+TGG | + | chr2_1:71224120-71224139 | Msa0222210:intron | 35.0% |
AACCAGTGCATAAAAAAGGA+TGG | - | chr2_1:71224125-71224144 | None:intergenic | 35.0% | |
TACTTAATTGCTCAGCTTCA+CGG | + | chr2_1:71224237-71224256 | Msa0222210:intron | 35.0% | |
!! | GGCACCAAACTTTTAAAAGA+AGG | - | chr2_1:71224363-71224382 | None:intergenic | 35.0% |
!!! | CTTTTAAAAGTTTGGTGCCT+TGG | + | chr2_1:71224364-71224383 | Msa0222210:intron | 35.0% |
!! | TAATGTAGATGGTGGATTGA+TGG | + | chr2_1:71224388-71224407 | Msa0222210:intron | 35.0% |
ATATGTCACACATGACTTCA+TGG | - | chr2_1:71224422-71224441 | None:intergenic | 35.0% | |
AAACATGACTTCATGGATAG+TGG | - | chr2_1:71224591-71224610 | None:intergenic | 35.0% | |
AGATGTCAAACATGACTTCA+TGG | - | chr2_1:71224598-71224617 | None:intergenic | 35.0% | |
ATAATTGAAAAAAGGGGGAG+GGG | - | chr2_1:71224750-71224769 | None:intergenic | 35.0% | |
CATAATTGAAAAAAGGGGGA+GGG | - | chr2_1:71224751-71224770 | None:intergenic | 35.0% | |
TCATAATTGAAAAAAGGGGG+AGG | - | chr2_1:71224752-71224771 | None:intergenic | 35.0% | |
!!! | CCCCTTTTTTCAATTATGAC+TGG | + | chr2_1:71224753-71224772 | Msa0222210:intron | 35.0% |
GGCCAGTCATAATTGAAAAA+AGG | - | chr2_1:71224758-71224777 | None:intergenic | 35.0% | |
! | CGGGTTAGATTATATCAACA+TGG | + | chr2_1:71224866-71224885 | Msa0222210:intron | 35.0% |
TAGATGTGATGCATTGGAAA+TGG | - | chr2_1:71225207-71225226 | None:intergenic | 35.0% | |
! | TTTGAAACAGCTGAAACTTC+AGG | - | chr2_1:71225553-71225572 | None:intergenic | 35.0% |
ATTGCGTGTAATTAACGCTT+TGG | + | chr2_1:71225882-71225901 | Msa0222210:CDS | 35.0% | |
! | ATTAACGCTTTGGTTCCAAA+TGG | + | chr2_1:71225892-71225911 | Msa0222210:CDS | 35.0% |
ATTGCTGAAGGATTGAAGAA+AGG | + | chr2_1:71225925-71225944 | Msa0222210:CDS | 35.0% | |
TTGCTGAAGGATTGAAGAAA+GGG | + | chr2_1:71225926-71225945 | Msa0222210:CDS | 35.0% | |
GGTATCATGTTACTAACTGA+TGG | + | chr2_1:71225991-71226010 | Msa0222210:CDS | 35.0% | |
AGCCGTGGTACAAATATTAT+GGG | - | chr2_1:71226025-71226044 | None:intergenic | 35.0% | |
TTAGTACGATGAATGGAGTT+CGG | - | chr2_1:71226078-71226097 | None:intergenic | 35.0% | |
AACTCCATTCATCGTACTAA+CGG | + | chr2_1:71226078-71226097 | Msa0222210:CDS | 35.0% | |
CAACTTAGTTCAGTAAAAGC+AGG | + | chr2_1:71226315-71226334 | Msa0222210:CDS | 35.0% | |
TGCAAGAATGGCTTCTATAA+AGG | + | chr2_1:71226365-71226384 | Msa0222210:CDS | 35.0% | |
AGAATGGCTTCTATAAAGGT+AGG | + | chr2_1:71226369-71226388 | Msa0222210:CDS | 35.0% | |
TCATCACTAGATTTCTCAAC+TGG | - | chr2_1:71226444-71226463 | None:intergenic | 35.0% | |
!! | AAACCCTCCATTTTTGTGAT+GGG | - | chr2_1:71226504-71226523 | None:intergenic | 35.0% |
CAATAGAAGTAGATAGGCAA+AGG | + | chr2_1:71226583-71226602 | Msa0222210:CDS | 35.0% | |
TGTCCTAGAAAGATGTCAAA+GGG | + | chr2_1:71226683-71226702 | Msa0222210:CDS | 35.0% | |
!! | AGAAGTACATAATGGATCAC+CGG | - | chr2_1:71226736-71226755 | None:intergenic | 35.0% |
! | GCAGAAAGAGAAGTACATAA+TGG | - | chr2_1:71226744-71226763 | None:intergenic | 35.0% |
TTCTCTTTCTGCTGAACTAA+AGG | + | chr2_1:71226752-71226771 | Msa0222210:CDS | 35.0% | |
CTACTAAATCCTTTAGTGGT+CGG | + | chr2_1:71227003-71227022 | Msa0222210:CDS | 35.0% | |
! | CGAAAACTCAAACTTGCTCT+TGG | + | chr2_1:71222381-71222400 | Msa0222210:CDS | 40.0% |
!!! | GGTTTTGGGAAGATGAATAC+AGG | - | chr2_1:71222418-71222437 | None:intergenic | 40.0% |
GATGAAAATGCAAACCTTGG+AGG | - | chr2_1:71222568-71222587 | None:intergenic | 40.0% | |
! | TATTCATTTTATGGCGGTGG+TGG | + | chr2_1:71222846-71222865 | Msa0222210:intron | 40.0% |
!! | TTTGAGGAGTGTTGATCCTA+TGG | + | chr2_1:71223167-71223186 | Msa0222210:intron | 40.0% |
AAAATGACACTGTTTGCAGC+TGG | - | chr2_1:71223232-71223251 | None:intergenic | 40.0% | |
TCTCAATGTCTCACAAGTTC+AGG | - | chr2_1:71223367-71223386 | None:intergenic | 40.0% | |
AGGGATTTGATGAAGTGGAA+TGG | - | chr2_1:71223646-71223665 | None:intergenic | 40.0% | |
TGGAAAGGGATTTGATGAAG+TGG | - | chr2_1:71223651-71223670 | None:intergenic | 40.0% | |
GAAAAAAAGTCAGCGTTTGG+TGG | - | chr2_1:71223894-71223913 | None:intergenic | 40.0% | |
! | GTAATAGGGATGGGTGTTTT+TGG | + | chr2_1:71223981-71224000 | Msa0222210:intron | 40.0% |
!!! | TTATGCACTGGTTTTTGTGG+TGG | + | chr2_1:71224132-71224151 | Msa0222210:intron | 40.0% |
TCCACCATCTACATTAACCA+AGG | - | chr2_1:71224384-71224403 | None:intergenic | 40.0% | |
CACATGACTTCATGGAATAG+TGG | - | chr2_1:71224414-71224433 | None:intergenic | 40.0% | |
CTAAGGAAAGGAATGCTCTA+CGG | + | chr2_1:71224846-71224865 | Msa0222210:intron | 40.0% | |
TAAGGAAAGGAATGCTCTAC+GGG | + | chr2_1:71224847-71224866 | Msa0222210:intron | 40.0% | |
TGTCCTTTACGTTAGCACTT+CGG | + | chr2_1:71225055-71225074 | Msa0222210:intron | 40.0% | |
TGCTTGAATGCAATGAAACC+AGG | + | chr2_1:71225139-71225158 | Msa0222210:CDS | 40.0% | |
GCTTGAATGCAATGAAACCA+GGG | + | chr2_1:71225140-71225159 | Msa0222210:CDS | 40.0% | |
! | TCCATTTTGCTCTGCAAACA+GGG | - | chr2_1:71225255-71225274 | None:intergenic | 40.0% |
! | TTCCATTTTGCTCTGCAAAC+AGG | - | chr2_1:71225256-71225275 | None:intergenic | 40.0% |
TCTTGGTTGAGAGATGTCAT+GGG | - | chr2_1:71225314-71225333 | None:intergenic | 40.0% | |
TCATCGTCGTCAAAGATAGT+TGG | - | chr2_1:71225442-71225461 | None:intergenic | 40.0% | |
!! | GTCACAGTTCTAGACATAAG+TGG | + | chr2_1:71225700-71225719 | Msa0222210:CDS | 40.0% |
AATGATAGAAAGACGGTCTG+AGG | - | chr2_1:71225794-71225813 | None:intergenic | 40.0% | |
TGCTGAAGGATTGAAGAAAG+GGG | + | chr2_1:71225927-71225946 | Msa0222210:CDS | 40.0% | |
AGGATTGAAGAAAGGGGTTA+AGG | + | chr2_1:71225933-71225952 | Msa0222210:CDS | 40.0% | |
CAGCCGTGGTACAAATATTA+TGG | - | chr2_1:71226026-71226045 | None:intergenic | 40.0% | |
CATAATATTTGTACCACGGC+TGG | + | chr2_1:71226024-71226043 | Msa0222210:CDS | 40.0% | |
CCAAAACCAAATGCATGAAC+TGG | - | chr2_1:71226120-71226139 | None:intergenic | 40.0% | |
!! | CCAGTTCATGCATTTGGTTT+TGG | + | chr2_1:71226117-71226136 | Msa0222210:CDS | 40.0% |
!! | CATTCCATCTCTGAGATTTC+TGG | + | chr2_1:71226165-71226184 | Msa0222210:CDS | 40.0% |
TATTGGGGGACTATTAAGTG+TGG | + | chr2_1:71226245-71226264 | Msa0222210:CDS | 40.0% | |
TAGTGACCCCATCACAAAAA+TGG | + | chr2_1:71226494-71226513 | Msa0222210:CDS | 40.0% | |
!! | AACCCTCCATTTTTGTGATG+GGG | - | chr2_1:71226503-71226522 | None:intergenic | 40.0% |
!! | CAAACCCTCCATTTTTGTGA+TGG | - | chr2_1:71226505-71226524 | None:intergenic | 40.0% |
CATCACAAAAATGGAGGGTT+TGG | + | chr2_1:71226503-71226522 | Msa0222210:CDS | 40.0% | |
GAAGATTCAGAGACCTAATG+TGG | + | chr2_1:71226542-71226561 | Msa0222210:CDS | 40.0% | |
GAATAGACTTCAAGCTACTG+AGG | + | chr2_1:71226605-71226624 | Msa0222210:CDS | 40.0% | |
CTGTCCTAGAAAGATGTCAA+AGG | + | chr2_1:71226682-71226701 | Msa0222210:CDS | 40.0% | |
ATGCCCTTTGACATCTTTCT+AGG | - | chr2_1:71226689-71226708 | None:intergenic | 40.0% | |
!! | GAAACTATTTCTGCTCAAGC+CGG | + | chr2_1:71226714-71226733 | Msa0222210:CDS | 40.0% |
CGACGTGTTTATGAAGAATC+TGG | + | chr2_1:71226798-71226817 | Msa0222210:CDS | 40.0% | |
GGAAGAGCTTATGTACTATC+AGG | + | chr2_1:71226819-71226838 | Msa0222210:CDS | 40.0% | |
TCAGGAATGAGCTCTCATTT+AGG | + | chr2_1:71226837-71226856 | Msa0222210:CDS | 40.0% | |
CAGGAATGAGCTCTCATTTA+GGG | + | chr2_1:71226838-71226857 | Msa0222210:CDS | 40.0% | |
CGACCTACTAAATCCTTTAG+TGG | + | chr2_1:71226999-71227018 | Msa0222210:CDS | 40.0% | |
CGACCACTAAAGGATTTAGT+AGG | - | chr2_1:71227005-71227024 | None:intergenic | 40.0% | |
TAATGGCCCACAATAGTCAC+GGG | - | chr2_1:71222299-71222318 | None:intergenic | 45.0% | |
GTAATGGCCCACAATAGTCA+CGG | - | chr2_1:71222300-71222319 | None:intergenic | 45.0% | |
AAAGCGACGGAAGAAAGAGA+TGG | - | chr2_1:71222325-71222344 | None:intergenic | 45.0% | |
!! | GAAGGTTGATCGGAGGTTTT+GGG | - | chr2_1:71222432-71222451 | None:intergenic | 45.0% |
!! | AGAAGGTTGATCGGAGGTTT+TGG | - | chr2_1:71222433-71222452 | None:intergenic | 45.0% |
! | GATGGAGGAAGAAGGTTGAT+CGG | - | chr2_1:71222442-71222461 | None:intergenic | 45.0% |
GGTGCCTTGGTTAATGTAGA+TGG | + | chr2_1:71224377-71224396 | Msa0222210:intron | 45.0% | |
GCCTTGGTTAATGTAGATGG+TGG | + | chr2_1:71224380-71224399 | Msa0222210:intron | 45.0% | |
GTCCTTTACGTTAGCACTTC+GGG | + | chr2_1:71225056-71225075 | Msa0222210:intron | 45.0% | |
! | AACCCGAAGTGCTAACGTAA+AGG | - | chr2_1:71225061-71225080 | None:intergenic | 45.0% |
AATGCAATGAAACCAGGGCA+GGG | + | chr2_1:71225145-71225164 | Msa0222210:CDS | 45.0% | |
AGAGATGTCATGGGACACAT+TGG | - | chr2_1:71225305-71225324 | None:intergenic | 45.0% | |
CTCTTGGTTGAGAGATGTCA+TGG | - | chr2_1:71225315-71225334 | None:intergenic | 45.0% | |
CATGACATCTCTCAACCAAG+AGG | + | chr2_1:71225313-71225332 | Msa0222210:CDS | 45.0% | |
TCTTCGTAGTATACCTGACC+AGG | - | chr2_1:71225344-71225363 | None:intergenic | 45.0% | |
TGACGACGATGATGAAGTCT+TGG | + | chr2_1:71225450-71225469 | Msa0222210:CDS | 45.0% | |
!! | CCTGCCACCATTTTGTTTGA+TGG | - | chr2_1:71225632-71225651 | None:intergenic | 45.0% |
CCATCAAACAAAATGGTGGC+AGG | + | chr2_1:71225629-71225648 | Msa0222210:CDS | 45.0% | |
AAGATCAACTTGAGCACGAG+AGG | - | chr2_1:71225680-71225699 | None:intergenic | 45.0% | |
GACATAAGTGGTAGCATGAC+TGG | + | chr2_1:71225712-71225731 | Msa0222210:CDS | 45.0% | |
CATCATTCATCCGTCGTAGA+GGG | - | chr2_1:71225846-71225865 | None:intergenic | 45.0% | |
! | AACGCTTTGGTTCCAAATGG+TGG | + | chr2_1:71225895-71225914 | Msa0222210:CDS | 45.0% |
GCAATGTCTGTTCCACCATT+TGG | - | chr2_1:71225910-71225929 | None:intergenic | 45.0% | |
! | AGGTTTTTGTTGACCGTCGA+TGG | + | chr2_1:71225953-71225972 | Msa0222210:CDS | 45.0% |
AGTAACATGATACCACCCAC+TGG | - | chr2_1:71225985-71226004 | None:intergenic | 45.0% | |
ATTTGTACCACGGCTGGTAT+TGG | + | chr2_1:71226030-71226049 | Msa0222210:CDS | 45.0% | |
TTCGCCGTTAGTACGATGAA+TGG | - | chr2_1:71226085-71226104 | None:intergenic | 45.0% | |
ATTCATCGTACTAACGGCGA+AGG | + | chr2_1:71226084-71226103 | Msa0222210:CDS | 45.0% | |
!! | TCCATCTCTGAGATTTCTGG+AGG | + | chr2_1:71226168-71226187 | Msa0222210:CDS | 45.0% |
CACTCCCTCAGCTTCAATAA+AGG | - | chr2_1:71226202-71226221 | None:intergenic | 45.0% | |
ATGCGTTCGCTCAGTGTATT+GGG | + | chr2_1:71226229-71226248 | Msa0222210:CDS | 45.0% | |
TGACCCCATCACAAAAATGG+AGG | + | chr2_1:71226497-71226516 | Msa0222210:CDS | 45.0% | |
GACCCCATCACAAAAATGGA+GGG | + | chr2_1:71226498-71226517 | Msa0222210:CDS | 45.0% | |
GCTTGATCTCTAGCCACATT+AGG | - | chr2_1:71226558-71226577 | None:intergenic | 45.0% | |
ACTTCAAGCTACTGAGGCAA+TGG | + | chr2_1:71226611-71226630 | Msa0222210:CDS | 45.0% | |
TGCTGAACTAAAGGAGATGC+AGG | + | chr2_1:71226761-71226780 | Msa0222210:CDS | 45.0% | |
TGTCCTCACAAGAATGGTCT+GGG | - | chr2_1:71226955-71226974 | None:intergenic | 45.0% | |
TTGTGGTGTCCTCACAAGAA+TGG | - | chr2_1:71226961-71226980 | None:intergenic | 45.0% | |
TCTTTGTTGCCGACCACTAA+AGG | - | chr2_1:71227015-71227034 | None:intergenic | 45.0% | |
!! | AATTTATTTATCAAATTTAT+TGG | + | chr2_1:71223761-71223780 | Msa0222210:intron | 5.0% |
!! | TATATGATTAATAATTAAAT+TGG | + | chr2_1:71224330-71224349 | Msa0222210:intron | 5.0% |
AAGAGGAGGATGAGGAGAGA+CGG | - | chr2_1:71222542-71222561 | None:intergenic | 50.0% | |
ATCCTCCTCTTCATCCTCCA+AGG | + | chr2_1:71222551-71222570 | Msa0222210:CDS | 50.0% | |
AACCTTGGAGGATGAAGAGG+AGG | - | chr2_1:71222556-71222575 | None:intergenic | 50.0% | |
GCAAACCTTGGAGGATGAAG+AGG | - | chr2_1:71222559-71222578 | None:intergenic | 50.0% | |
TGGACCTGCATCAAGACAAG+AGG | + | chr2_1:71224152-71224171 | Msa0222210:intron | 50.0% | |
GGACCTGCATCAAGACAAGA+GGG | + | chr2_1:71224153-71224172 | Msa0222210:intron | 50.0% | |
GACCTGCATCAAGACAAGAG+GGG | + | chr2_1:71224154-71224173 | Msa0222210:intron | 50.0% | |
GGGAGGGGAGCAATCTTATA+CGG | - | chr2_1:71224735-71224754 | None:intergenic | 50.0% | |
GAATGCAATGAAACCAGGGC+AGG | + | chr2_1:71225144-71225163 | Msa0222210:CDS | 50.0% | |
ATGCAATGAAACCAGGGCAG+GGG | + | chr2_1:71225146-71225165 | Msa0222210:CDS | 50.0% | |
GCCCTGTTTGCAGAGCAAAA+TGG | + | chr2_1:71225251-71225270 | Msa0222210:CDS | 50.0% | |
CTTTCTTCCTCGCGACAGAA+TGG | + | chr2_1:71225364-71225383 | Msa0222210:CDS | 50.0% | |
AACTGAACCATTCTGTCGCG+AGG | - | chr2_1:71225374-71225393 | None:intergenic | 50.0% | |
CGCGACAGAATGGTTCAGTT+CGG | + | chr2_1:71225374-71225393 | Msa0222210:CDS | 50.0% | |
GCATCATTCATCCGTCGTAG+AGG | - | chr2_1:71225847-71225866 | None:intergenic | 50.0% | |
GGTGGAACAGACATTGCTGA+AGG | + | chr2_1:71225913-71225932 | Msa0222210:CDS | 50.0% | |
CCACTGGATTCTTCCATCGA+CGG | - | chr2_1:71225969-71225988 | None:intergenic | 50.0% | |
CGTCGATGGAAGAATCCAGT+GGG | + | chr2_1:71225967-71225986 | Msa0222210:CDS | 50.0% | |
GCCTCCAGAAATCTCAGAGA+TGG | - | chr2_1:71226172-71226191 | None:intergenic | 50.0% | |
TGAAGCTGAGGGAGTGATTC+AGG | + | chr2_1:71226206-71226225 | Msa0222210:CDS | 50.0% | |
GATGCGTTCGCTCAGTGTAT+TGG | + | chr2_1:71226228-71226247 | Msa0222210:CDS | 50.0% | |
TGCGTTCGCTCAGTGTATTG+GGG | + | chr2_1:71226230-71226249 | Msa0222210:CDS | 50.0% | |
TGGGGGACTATTAAGTGTGG+TGG | + | chr2_1:71226248-71226267 | Msa0222210:CDS | 50.0% | |
TGCGTACCAAACTCCTTCCA+TGG | + | chr2_1:71226911-71226930 | Msa0222210:CDS | 50.0% | |
TGTCAGCCATGGAAGGAGTT+TGG | - | chr2_1:71226920-71226939 | None:intergenic | 50.0% | |
AACTCCTTCCATGGCTGACA+TGG | + | chr2_1:71226920-71226939 | Msa0222210:CDS | 50.0% | |
GAAACCATGTCAGCCATGGA+AGG | - | chr2_1:71226927-71226946 | None:intergenic | 50.0% | |
ACGTGAAACCATGTCAGCCA+TGG | - | chr2_1:71226931-71226950 | None:intergenic | 50.0% | |
GTTCCCAGACCATTCTTGTG+AGG | + | chr2_1:71226949-71226968 | Msa0222210:CDS | 50.0% | |
GTGTCCTCACAAGAATGGTC+TGG | - | chr2_1:71226956-71226975 | None:intergenic | 50.0% | |
CACAATAGTCACGGGAGGGA+GGG | - | chr2_1:71222291-71222310 | None:intergenic | 55.0% | |
CTCCCTCCCGTGACTATTGT+GGG | + | chr2_1:71222290-71222309 | Msa0222210:five_prime_UTR | 55.0% | |
! | GGAGGAAGAAGGTTGATCGG+AGG | - | chr2_1:71222439-71222458 | None:intergenic | 55.0% |
CGATCGGAGATGGAGGAAGA+AGG | - | chr2_1:71222450-71222469 | None:intergenic | 55.0% | |
TGAGAGACGATCGGAGATGG+AGG | - | chr2_1:71222457-71222476 | None:intergenic | 55.0% | |
GGATGAGAGACGATCGGAGA+TGG | - | chr2_1:71222460-71222479 | None:intergenic | 55.0% | |
!! | AAGGTGTCGGAGTAGAGGGA+CGG | - | chr2_1:71222506-71222525 | None:intergenic | 55.0% |
!! | GAGGAAGGTGTCGGAGTAGA+GGG | - | chr2_1:71222510-71222529 | None:intergenic | 55.0% |
GGAGGATGAAGAGGAGGATG+AGG | - | chr2_1:71222550-71222569 | None:intergenic | 55.0% | |
CACCCCTCTTGTCTTGATGC+AGG | - | chr2_1:71224159-71224178 | None:intergenic | 55.0% | |
CTGCATCAAGACAAGAGGGG+TGG | + | chr2_1:71224157-71224176 | Msa0222210:intron | 55.0% | |
CTCAACCAAGAGGTGACACC+TGG | + | chr2_1:71225323-71225342 | Msa0222210:CDS | 55.0% | |
GCACGAGAGGTCTCAACTGA+AGG | - | chr2_1:71225667-71225686 | None:intergenic | 55.0% | |
TCGTAGAGGGAAGATGCGAC+GGG | - | chr2_1:71225833-71225852 | None:intergenic | 55.0% | |
GTCGTAGAGGGAAGATGCGA+CGG | - | chr2_1:71225834-71225853 | None:intergenic | 55.0% | |
GTCGCATCTTCCCTCTACGA+CGG | + | chr2_1:71225833-71225852 | Msa0222210:CDS | 55.0% | |
CCGTCGATGGAAGAATCCAG+TGG | + | chr2_1:71225966-71225985 | Msa0222210:CDS | 55.0% | |
CGATGGAAGAATCCAGTGGG+TGG | + | chr2_1:71225970-71225989 | Msa0222210:CDS | 55.0% | |
! | ACCACGGCTGGTATTGGAGA+AGG | + | chr2_1:71226036-71226055 | Msa0222210:CDS | 55.0% |
ACCTTCTCCAATACCAGCCG+TGG | - | chr2_1:71226040-71226059 | None:intergenic | 55.0% | |
GCGTTCGCTCAGTGTATTGG+GGG | + | chr2_1:71226231-71226250 | Msa0222210:CDS | 55.0% | |
AGCTACTGAGGCAATGGCTG+AGG | + | chr2_1:71226617-71226636 | Msa0222210:CDS | 55.0% | |
GCTAGAGTCGAAGCAGAACG+TGG | + | chr2_1:71226639-71226658 | Msa0222210:CDS | 55.0% | |
GGGCAAAGAGCAACTGCAAG+AGG | + | chr2_1:71226858-71226877 | Msa0222210:CDS | 55.0% | |
CACAAAGCTGGTGGAGTCTG+TGG | - | chr2_1:71226889-71226908 | None:intergenic | 55.0% | |
TTGGTACGCACGCACAAAGC+TGG | - | chr2_1:71226901-71226920 | None:intergenic | 55.0% | |
ATAGTCACGGGAGGGAGGGA+GGG | - | chr2_1:71222287-71222306 | None:intergenic | 60.0% | |
AATAGTCACGGGAGGGAGGG+AGG | - | chr2_1:71222288-71222307 | None:intergenic | 60.0% | |
CCACAATAGTCACGGGAGGG+AGG | - | chr2_1:71222292-71222311 | None:intergenic | 60.0% | |
CCTCCCTCCCGTGACTATTG+TGG | + | chr2_1:71222289-71222308 | Msa0222210:five_prime_UTR | 60.0% | |
GGCCCACAATAGTCACGGGA+GGG | - | chr2_1:71222295-71222314 | None:intergenic | 60.0% | |
TGGCCCACAATAGTCACGGG+AGG | - | chr2_1:71222296-71222315 | None:intergenic | 60.0% | |
GGAGGCGGATGAGAGACGAT+CGG | - | chr2_1:71222466-71222485 | None:intergenic | 60.0% | |
GATCGTCTCTCATCCGCCTC+CGG | + | chr2_1:71222465-71222484 | Msa0222210:CDS | 60.0% | |
!! | GGAGGAAGGTGTCGGAGTAG+AGG | - | chr2_1:71222511-71222530 | None:intergenic | 60.0% |
ACTCCGACACCTTCCTCCTC+CGG | + | chr2_1:71222513-71222532 | Msa0222210:CDS | 60.0% | |
! | AGACCGGAGGAGGAAGGTGT+CGG | - | chr2_1:71222519-71222538 | None:intergenic | 60.0% |
GGATGAGGAGAGACGGAGAC+CGG | - | chr2_1:71222535-71222554 | None:intergenic | 60.0% | |
AATGAAACCAGGGCAGGGGC+AGG | + | chr2_1:71225150-71225169 | Msa0222210:CDS | 60.0% | |
! | CCTGACCAGGTGTCACCTCT+TGG | - | chr2_1:71225331-71225350 | None:intergenic | 60.0% |
CCAAGAGGTGACACCTGGTC+AGG | + | chr2_1:71225328-71225347 | Msa0222210:CDS | 60.0% | |
GAATGATGCTGCGCGACAGC+AGG | + | chr2_1:71225858-71225877 | Msa0222210:CDS | 60.0% | |
GTACGCACGCACAAAGCTGG+TGG | - | chr2_1:71226898-71226917 | None:intergenic | 60.0% | |
!! | TCCGCCTCCGGTGCTGTTTC+CGG | + | chr2_1:71222477-71222496 | Msa0222210:CDS | 65.0% |
! | ACCGGAAACAGCACCGGAGG+CGG | - | chr2_1:71222481-71222500 | None:intergenic | 65.0% |
ACGGCGACCGGAAACAGCAC+CGG | - | chr2_1:71222487-71222506 | None:intergenic | 65.0% | |
AGACGGAGACCGGAGGAGGA+AGG | - | chr2_1:71222525-71222544 | None:intergenic | 65.0% | |
TGAGGAGAGACGGAGACCGG+AGG | - | chr2_1:71222532-71222551 | None:intergenic | 65.0% | |
AAAATGGCCTGCCCCTGCCC+TGG | - | chr2_1:71225160-71225179 | None:intergenic | 65.0% | |
! | GCGACCGGAAACAGCACCGG+AGG | - | chr2_1:71222484-71222503 | None:intergenic | 70.0% |
CGGAGTAGAGGGACGGCGAC+CGG | - | chr2_1:71222499-71222518 | None:intergenic | 70.0% | |
GGAGAGACGGAGACCGGAGG+AGG | - | chr2_1:71222529-71222548 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 71222216 | 71227040 | 71222216 | ID=Msa0222210;Name=Msa0222210 |
chr2_1 | mRNA | 71222216 | 71227040 | 71222216 | ID=Msa0222210-mRNA-1;Parent=Msa0222210;Name=Msa0222210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=150|1|0.5|1|1|1|2|0|707 |
chr2_1 | exon | 71222216 | 71222572 | 71222216 | ID=Msa0222210-mRNA-1:exon:20472;Parent=Msa0222210-mRNA-1 |
chr2_1 | exon | 71225124 | 71227040 | 71225124 | ID=Msa0222210-mRNA-1:exon:20473;Parent=Msa0222210-mRNA-1 |
chr2_1 | five_prime_UTR | 71222216 | 71222365 | 71222216 | ID=Msa0222210-mRNA-1:five_prime_utr;Parent=Msa0222210-mRNA-1 |
chr2_1 | CDS | 71222366 | 71222572 | 71222366 | ID=Msa0222210-mRNA-1:cds;Parent=Msa0222210-mRNA-1 |
chr2_1 | CDS | 71225124 | 71227040 | 71225124 | ID=Msa0222210-mRNA-1:cds;Parent=Msa0222210-mRNA-1 |
Gene Sequence |
Protein sequence |