Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224300 | XP_003597607.2 | 90.764 | 314 | 19 | 2 | 1 | 304 | 1 | 314 | 6.87e-177 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224300 | A0A396JDD0 | 90.764 | 314 | 19 | 2 | 1 | 304 | 1 | 314 | 3.28e-177 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0224300 | Msa0580420 | 0.816259 | 6.065128e-52 | -8.615850e-47 |
| Msa0224300 | Msa0870150 | 0.801615 | 8.280595e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224300 | MtrunA17_Chr2g0330281 | 90.764 | 314 | 19 | 2 | 1 | 304 | 1 | 314 | 0.0 | 501 |
| Msa0224300 | MtrunA17_Chr8g0342021 | 60.000 | 200 | 53 | 2 | 121 | 293 | 89 | 288 | 1.02e-70 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224300 | AT1G17665.1 | 51.095 | 274 | 107 | 3 | 53 | 304 | 70 | 338 | 1.49e-77 | 240 |
Find 60 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAATGGGTCCGGCTAAT+TGG | 0.150533 | 2_1:+74165855 | None:intergenic |
| TACCCTCTGATTCCGCTAAA+TGG | 0.227484 | 2_1:-74165809 | Msa0224300:CDS |
| GAGTGATGCAAAGAGGAAAA+TGG | 0.294497 | 2_1:+74165989 | None:intergenic |
| GGAATATAGATGATTATATT+AGG | 0.295239 | 2_1:-74162561 | Msa0224300:three_prime_UTR |
| AAGAGAAGAAGGATTCATTT+TGG | 0.297482 | 2_1:-74162862 | Msa0224300:intron |
| TATTAGGAGGAATTTATAAA+TGG | 0.303419 | 2_1:-74162545 | Msa0224300:three_prime_UTR |
| CTGTGGCAGAGTCAATTTCT+TGG | 0.344298 | 2_1:+74165557 | None:intergenic |
| AGGTGAATTATCAGAAAGTT+TGG | 0.359477 | 2_1:+74165890 | None:intergenic |
| ACTTTCACCAGCATACAAAA+AGG | 0.378731 | 2_1:-74163157 | Msa0224300:intron |
| AGTGATGCAAAGAGGAAAAT+GGG | 0.392742 | 2_1:+74165990 | None:intergenic |
| GAAGAAGAAAGAAATGAATT+CGG | 0.397092 | 2_1:-74165709 | Msa0224300:CDS |
| ATAAATGGGTCCGGCTAATT+GGG | 0.402203 | 2_1:+74165856 | None:intergenic |
| GGAACTTCCAAAGCTGAATC+CGG | 0.418164 | 2_1:+74165768 | None:intergenic |
| TGTAGAAGACTCCATGGAAA+TGG | 0.421312 | 2_1:+74166055 | None:intergenic |
| ATTATTAGCACAAGAGAAGA+AGG | 0.430942 | 2_1:-74162873 | Msa0224300:CDS |
| CGACGACCCGGATTCAGCTT+TGG | 0.432908 | 2_1:-74165775 | Msa0224300:CDS |
| ACCCTCTGATTCCGCTAAAT+GGG | 0.447906 | 2_1:-74165808 | Msa0224300:CDS |
| TTGATGAAGATGCTTGAACT+TGG | 0.451728 | 2_1:-74162974 | Msa0224300:intron |
| GAGAATGGTTAGAGAGAGAA+GGG | 0.453142 | 2_1:+74165965 | None:intergenic |
| TTTCGACCGACTTCATCAAC+AGG | 0.459083 | 2_1:-74163337 | Msa0224300:intron |
| CCTCTATTACGCAGGTTGTC+CGG | 0.459634 | 2_1:-74163835 | Msa0224300:intron |
| TGGAAGAGAGGATTTGAAGA+AGG | 0.473736 | 2_1:+74166032 | None:intergenic |
| GGCTACCTTGTTCGACGACC+CGG | 0.477249 | 2_1:-74165787 | Msa0224300:CDS |
| AGTGAAGAGTGTGTGAAAAC+GGG | 0.480328 | 2_1:-74165684 | Msa0224300:CDS |
| CTATACTCCAAGTCCAAGTT+AGG | 0.483304 | 2_1:+74166151 | None:intergenic |
| CAATCAAACTATTAGCAAAC+CGG | 0.483836 | 2_1:+74163816 | None:intergenic |
| ACGCTACTTGAAGAAGTAAA+CGG | 0.483883 | 2_1:+74165633 | None:intergenic |
| ACTTTGAATTTCCATTTCCA+TGG | 0.485537 | 2_1:-74166066 | Msa0224300:exon |
| CTAATAGTTTGATTGATGCT+AGG | 0.486199 | 2_1:-74163808 | Msa0224300:CDS |
| ACTTGGAGTGTGCGCGGAGA+AGG | 0.502620 | 2_1:-74162957 | Msa0224300:CDS |
| AGAGAATGGTTAGAGAGAGA+AGG | 0.503092 | 2_1:+74165964 | None:intergenic |
| TTCAGCTTTGGAAGTTCCAT+CGG | 0.510736 | 2_1:-74165763 | Msa0224300:CDS |
| AAGTGAAGAGTGTGTGAAAA+CGG | 0.519250 | 2_1:-74165685 | Msa0224300:CDS |
| AACAAAGGCTTTACTATGCA+AGG | 0.521350 | 2_1:-74163373 | Msa0224300:CDS |
| TGAATCCGGGTCGTCGAACA+AGG | 0.521933 | 2_1:+74165782 | None:intergenic |
| TATCTATAGTGTACTGTCAC+AGG | 0.529697 | 2_1:-74162629 | Msa0224300:three_prime_UTR |
| TGGGTCCGGCTAATTGGGTC+GGG | 0.534492 | 2_1:+74165861 | None:intergenic |
| CACAACCCGACCCAATTAGC+CGG | 0.544642 | 2_1:-74165866 | Msa0224300:CDS |
| CAAGAAATTGACTCTGCCAC+AGG | 0.551982 | 2_1:-74165556 | Msa0224300:intron |
| AAAACCGCCTAACTTGGACT+TGG | 0.562566 | 2_1:-74166158 | Msa0224300:five_prime_UTR |
| ATTTGAAAGAGATGGAAGAG+AGG | 0.563153 | 2_1:+74166020 | None:intergenic |
| ATGCTGGTGAAAGTTTAAGC+TGG | 0.564804 | 2_1:+74163166 | None:intergenic |
| CTAATTGGGTCGGGTTGTGA+AGG | 0.565012 | 2_1:+74165870 | None:intergenic |
| ACGAAAGTTTGTAATAACAA+AGG | 0.565525 | 2_1:-74163388 | Msa0224300:CDS |
| TGGAAATTCAAAGTAAAGTG+AGG | 0.571992 | 2_1:+74166075 | None:intergenic |
| ATGGGTCCGGCTAATTGGGT+CGG | 0.572798 | 2_1:+74165860 | None:intergenic |
| GAACTTCCAAAGCTGAATCC+GGG | 0.573483 | 2_1:+74165769 | None:intergenic |
| AGAAGGTGTAGAAGACTCCA+TGG | 0.577513 | 2_1:+74166049 | None:intergenic |
| GAAGGGAGAGTGATGCAAAG+AGG | 0.578027 | 2_1:+74165982 | None:intergenic |
| TAATTCTTCAAAAGAAATGT+CGG | 0.585303 | 2_1:+74162892 | None:intergenic |
| GGTGGTGCATTTGAAAGAGA+TGG | 0.602876 | 2_1:+74166012 | None:intergenic |
| TACTCCAAGTCCAAGTTAGG+CGG | 0.608695 | 2_1:+74166154 | None:intergenic |
| AACAAACCTGTTGATGAAGT+CGG | 0.610559 | 2_1:+74163331 | None:intergenic |
| AGCCCATTTAGCGGAATCAG+AGG | 0.611536 | 2_1:+74165806 | None:intergenic |
| ATATAGATGATTATATTAGG+AGG | 0.627420 | 2_1:-74162558 | Msa0224300:three_prime_UTR |
| GCCCATTTAGCGGAATCAGA+GGG | 0.633492 | 2_1:+74165807 | None:intergenic |
| GAACAAGGTAGCCCATTTAG+CGG | 0.641926 | 2_1:+74165797 | None:intergenic |
| GTGATGCAAAGAGGAAAATG+GGG | 0.656559 | 2_1:+74165991 | None:intergenic |
| GCTTGAACTTGGAGTGTGCG+CGG | 0.681523 | 2_1:-74162963 | Msa0224300:CDS |
| ATGCAAAGAGGAAAATGGGG+TGG | 0.741334 | 2_1:+74165994 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTAAGTAATATATTTT+AGG | - | chr2_1:74163647-74163666 | Msa0224300:intron | 10.0% |
| !!! | ATGCAAATAATATTTATTTT+GGG | + | chr2_1:74164263-74164282 | None:intergenic | 10.0% |
| !!! | TTTAATCAACATAAATTTTT+TGG | + | chr2_1:74165224-74165243 | None:intergenic | 10.0% |
| !! | ATTATGTAAAATTGAGTTAA+AGG | - | chr2_1:74163346-74163365 | Msa0224300:CDS | 15.0% |
| !!! | CAACAATTAATTTAAAATTG+AGG | + | chr2_1:74164167-74164186 | None:intergenic | 15.0% |
| !!! | ATTTATTTTGGGAAAAAATA+GGG | + | chr2_1:74164252-74164271 | None:intergenic | 15.0% |
| !!! | TATTTATTTTGGGAAAAAAT+AGG | + | chr2_1:74164253-74164272 | None:intergenic | 15.0% |
| !!! | GATGCAAATAATATTTATTT+TGG | + | chr2_1:74164264-74164283 | None:intergenic | 15.0% |
| !!! | AGAAAAAAAGATTTTTTGAG+AGG | + | chr2_1:74162568-74162587 | None:intergenic | 20.0% |
| !!! | AAGAATCGATTTTGATAAAT+GGG | + | chr2_1:74162843-74162862 | None:intergenic | 20.0% |
| !!! | AAAGAATCGATTTTGATAAA+TGG | + | chr2_1:74162844-74162863 | None:intergenic | 20.0% |
| !! | ATACACTTATTTCCTTTATT+AGG | + | chr2_1:74163286-74163305 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGACATGTT+TGG | + | chr2_1:74163503-74163522 | None:intergenic | 20.0% |
| !!! | AAACATGTCAAAATCAATTT+TGG | - | chr2_1:74163502-74163521 | Msa0224300:intron | 20.0% |
| !! | CATTTCTTCAAAATAACAAA+AGG | - | chr2_1:74163723-74163742 | Msa0224300:intron | 20.0% |
| !! | TTGCAAATTTGTAATTAGAT+TGG | - | chr2_1:74163762-74163781 | Msa0224300:intron | 20.0% |
| !!! | CTTGTAGATATTGATTTAAA+TGG | + | chr2_1:74164634-74164653 | None:intergenic | 20.0% |
| !! | TAACTACATTAGAATAAACT+TGG | + | chr2_1:74164923-74164942 | None:intergenic | 20.0% |
| !! | TTTCCTAAATAAATTTCCAT+GGG | + | chr2_1:74164966-74164985 | None:intergenic | 20.0% |
| !! | ATTAGAACAAAAAAGATTAG+AGG | - | chr2_1:74165462-74165481 | Msa0224300:intron | 20.0% |
| !! | TAATTCTTCAAAAGAAATGT+CGG | + | chr2_1:74165793-74165812 | None:intergenic | 20.0% |
| !!! | CAAGCTTTATAAAAAACAAA+GGG | + | chr2_1:74165857-74165876 | None:intergenic | 20.0% |
| !!! | ACAAGCTTTATAAAAAACAA+AGG | + | chr2_1:74165858-74165877 | None:intergenic | 20.0% |
| !! | TTATAAAGCTTGTAAATGTA+TGG | - | chr2_1:74165865-74165884 | Msa0224300:CDS | 20.0% |
| !! | GGAATATAGATGATTATATT+AGG | - | chr2_1:74166121-74166140 | Msa0224300:five_prime_UTR | 20.0% |
| !! | ATATAGATGATTATATTAGG+AGG | - | chr2_1:74166124-74166143 | Msa0224300:five_prime_UTR | 20.0% |
| !! | TATTAGGAGGAATTTATAAA+TGG | - | chr2_1:74166137-74166156 | Msa0224300:five_prime_UTR | 20.0% |
| !!! | TTGGTTTTTTGGTTGTTTTT+GGG | + | chr2_1:74162776-74162795 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTTTGGTTGTTTT+TGG | + | chr2_1:74162777-74162796 | None:intergenic | 25.0% |
| !!! | TATCAGAAAGTTTGGTTTTT+TGG | + | chr2_1:74162787-74162806 | None:intergenic | 25.0% |
| ! | GAAGAAGAAAGAAATGAATT+CGG | - | chr2_1:74162973-74162992 | Msa0224300:intron | 25.0% |
| ! | TTTCATTGTGCATTTATCAA+TGG | - | chr2_1:74163181-74163200 | Msa0224300:CDS | 25.0% |
| ! | AATTCAAATTCAACAGTAAC+AGG | + | chr2_1:74163219-74163238 | None:intergenic | 25.0% |
| !! | TGTTTTCTTGTACTATAGTT+TGG | - | chr2_1:74163252-74163271 | Msa0224300:intron | 25.0% |
| ! | AAAGGAAATAAGTGTATGTT+TGG | - | chr2_1:74163289-74163308 | Msa0224300:intron | 25.0% |
| ! | TTCAAGTAGAATCAAAATTC+TGG | - | chr2_1:74163462-74163481 | Msa0224300:intron | 25.0% |
| !!! | TATATGTTTGGTTTCACTTT+TGG | + | chr2_1:74163533-74163552 | None:intergenic | 25.0% |
| !! | TACTTGTTCTTTTGTTAGTT+TGG | - | chr2_1:74163670-74163689 | Msa0224300:intron | 25.0% |
| !! | TTTGGTAATTTATTGAAGCT+AGG | - | chr2_1:74163688-74163707 | Msa0224300:intron | 25.0% |
| ! | ATTTATGTGTCAATAGATAG+AGG | - | chr2_1:74163985-74164004 | Msa0224300:intron | 25.0% |
| ! | GACATAGTTCAAAGTTTAAA+TGG | - | chr2_1:74164452-74164471 | Msa0224300:intron | 25.0% |
| !! | TTTTACTGTTGTAGCATATA+AGG | + | chr2_1:74164525-74164544 | None:intergenic | 25.0% |
| ! | ACTAAAATCTCAGTTTGAAA+AGG | + | chr2_1:74164790-74164809 | None:intergenic | 25.0% |
| ! | ATAAATTTCCATGGGTAAAA+AGG | + | chr2_1:74164958-74164977 | None:intergenic | 25.0% |
| ! | TTACCCATGGAAATTTATTT+AGG | - | chr2_1:74164960-74164979 | Msa0224300:intron | 25.0% |
| ! | GTTTCCTAAATAAATTTCCA+TGG | + | chr2_1:74164967-74164986 | None:intergenic | 25.0% |
| ! | AACTAGAAATAAGTCTTCAA+TGG | + | chr2_1:74164989-74165008 | None:intergenic | 25.0% |
| ! | TAAAAAATCAACCAACTTGA+AGG | - | chr2_1:74165131-74165150 | Msa0224300:intron | 25.0% |
| !!! | AGATTCTGTCATTTTATGTA+AGG | - | chr2_1:74165168-74165187 | Msa0224300:intron | 25.0% |
| ! | GATTTAGTATTATTCTTCTC+AGG | - | chr2_1:74165195-74165214 | Msa0224300:intron | 25.0% |
| !! | TTACATTGTCTTATTGTTAC+AGG | - | chr2_1:74165257-74165276 | Msa0224300:intron | 25.0% |
| !! | TACATTGTCTTATTGTTACA+GGG | - | chr2_1:74165258-74165277 | Msa0224300:intron | 25.0% |
| ! | ACGAAAGTTTGTAATAACAA+AGG | - | chr2_1:74165294-74165313 | Msa0224300:intron | 25.0% |
| ! | AATACAGAAAAAGTGGTTAT+TGG | + | chr2_1:74165945-74165964 | None:intergenic | 25.0% |
| ! | TATTTGTACAGGCTAAAAAA+TGG | - | chr2_1:74165961-74165980 | Msa0224300:CDS | 25.0% |
| ! | ATTTGTACAGGCTAAAAAAT+GGG | - | chr2_1:74165962-74165981 | Msa0224300:CDS | 25.0% |
| ! | ATTCCATAAACAACCAAAAA+TGG | + | chr2_1:74166106-74166125 | None:intergenic | 25.0% |
| TGGAAATTCAAAGTAAAGTG+AGG | + | chr2_1:74162610-74162629 | None:intergenic | 30.0% | |
| ACTTTGAATTTCCATTTCCA+TGG | - | chr2_1:74162616-74162635 | Msa0224300:three_prime_UTR | 30.0% | |
| !!! | TGGTTTTTTGGTTGTTTTTG+GGG | + | chr2_1:74162775-74162794 | None:intergenic | 30.0% |
| AGGTGAATTATCAGAAAGTT+TGG | + | chr2_1:74162795-74162814 | None:intergenic | 30.0% | |
| TATGAAACTTGAAATACCTG+TGG | + | chr2_1:74163145-74163164 | None:intergenic | 30.0% | |
| TTGGTTAGTGTTCCTAATAA+AGG | - | chr2_1:74163271-74163290 | Msa0224300:intron | 30.0% | |
| TAAGTGTATGTTTGGTTATG+CGG | - | chr2_1:74163297-74163316 | Msa0224300:intron | 30.0% | |
| GAGTTAAAGGTAAAGTGATT+TGG | - | chr2_1:74163359-74163378 | Msa0224300:CDS | 30.0% | |
| !!! | CATGTTTGGTTCATTGATTT+TGG | + | chr2_1:74163489-74163508 | None:intergenic | 30.0% |
| AAATACTATTACTTGCCACT+TGG | + | chr2_1:74163556-74163575 | None:intergenic | 30.0% | |
| ! | ATGCAAGCTATGCATATTTT+AGG | - | chr2_1:74163604-74163623 | Msa0224300:intron | 30.0% |
| !! | TTTTAGGTAAGAGAAATGCT+AGG | - | chr2_1:74163620-74163639 | Msa0224300:intron | 30.0% |
| TTTAGGTAAGAGAAATGCTA+GGG | - | chr2_1:74163621-74163640 | Msa0224300:intron | 30.0% | |
| !! | ATAGGGATTTGTTCTTTTTG+AGG | - | chr2_1:74163810-74163829 | Msa0224300:CDS | 30.0% |
| !! | TAGGGATTTGTTCTTTTTGA+GGG | - | chr2_1:74163811-74163830 | Msa0224300:CDS | 30.0% |
| ACAAGACAACATGTTTATTC+AGG | + | chr2_1:74163893-74163912 | None:intergenic | 30.0% | |
| TCAATAGATAGAGGAATTCA+TGG | - | chr2_1:74163994-74164013 | Msa0224300:intron | 30.0% | |
| TATATTGCAGTATGCAGTTA+TGG | - | chr2_1:74164297-74164316 | Msa0224300:intron | 30.0% | |
| ACATGAATTCATGAAGTTCA+TGG | - | chr2_1:74164482-74164501 | Msa0224300:intron | 30.0% | |
| AAATCAATATCTACAAGCCT+TGG | - | chr2_1:74164637-74164656 | Msa0224300:intron | 30.0% | |
| AATCAATATCTACAAGCCTT+GGG | - | chr2_1:74164638-74164657 | Msa0224300:intron | 30.0% | |
| ATCTACAAGTTAATTTCCCA+AGG | + | chr2_1:74164657-74164676 | None:intergenic | 30.0% | |
| AAAATATGCTCTCTCTCATT+TGG | - | chr2_1:74164718-74164737 | Msa0224300:intron | 30.0% | |
| !! | GGTTTTCATTTTAAGTAGCT+TGG | - | chr2_1:74164745-74164764 | Msa0224300:intron | 30.0% |
| AATCTCAGTTTGAAAAGGAA+AGG | + | chr2_1:74164785-74164804 | None:intergenic | 30.0% | |
| CAATCAAACTATTAGCAAAC+CGG | + | chr2_1:74164869-74164888 | None:intergenic | 30.0% | |
| CTAATAGTTTGATTGATGCT+AGG | - | chr2_1:74164874-74164893 | Msa0224300:intron | 30.0% | |
| TGCTATCTGTTTGTTCATAT+TGG | - | chr2_1:74165024-74165043 | Msa0224300:intron | 30.0% | |
| TATCTGTTTGTTCATATTGG+AGG | - | chr2_1:74165027-74165046 | Msa0224300:intron | 30.0% | |
| TTTGCAAATAACCTTCAAGT+TGG | + | chr2_1:74165145-74165164 | None:intergenic | 30.0% | |
| AACAAAATGAACTTCATCAG+AGG | + | chr2_1:74165419-74165438 | None:intergenic | 30.0% | |
| AGAACAAAAAAGATTAGAGG+AGG | - | chr2_1:74165465-74165484 | Msa0224300:intron | 30.0% | |
| ! | TATGATACCTTTTTGTATGC+TGG | + | chr2_1:74165535-74165554 | None:intergenic | 30.0% |
| TCATTACAATTCTTGTAGCT+AGG | - | chr2_1:74165613-74165632 | Msa0224300:CDS | 30.0% | |
| ATTATTAGCACAAGAGAAGA+AGG | - | chr2_1:74165809-74165828 | Msa0224300:CDS | 30.0% | |
| ! | AAGAGAAGAAGGATTCATTT+TGG | - | chr2_1:74165820-74165839 | Msa0224300:CDS | 30.0% |
| CTGTACAAATACAGAAAAAG+TGG | + | chr2_1:74165952-74165971 | None:intergenic | 30.0% | |
| !!! | CACTTTTTCTGTATTTGTAC+AGG | - | chr2_1:74165950-74165969 | Msa0224300:CDS | 30.0% |
| ATTTGAAAGAGATGGAAGAG+AGG | + | chr2_1:74162665-74162684 | None:intergenic | 35.0% | |
| AGTGATGCAAAGAGGAAAAT+GGG | + | chr2_1:74162695-74162714 | None:intergenic | 35.0% | |
| GTAGAGAGAGAAAAAGAGAA+TGG | + | chr2_1:74162735-74162754 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGTTGTTTTTGGG+GGG | + | chr2_1:74162773-74162792 | None:intergenic | 35.0% |
| !!! | GGTTTTTTGGTTGTTTTTGG+GGG | + | chr2_1:74162774-74162793 | None:intergenic | 35.0% |
| !! | TCGATTTTGATAAATGGGTC+CGG | + | chr2_1:74162838-74162857 | None:intergenic | 35.0% |
| ! | AAGTGAAGAGTGTGTGAAAA+CGG | - | chr2_1:74162997-74163016 | Msa0224300:intron | 35.0% |
| ACGCTACTTGAAGAAGTAAA+CGG | + | chr2_1:74163052-74163071 | None:intergenic | 35.0% | |
| !! | ATGTTTGGTTTCACTTTTGG+AGG | + | chr2_1:74163530-74163549 | None:intergenic | 35.0% |
| GAAACCAAACATATACCAAG+TGG | - | chr2_1:74163538-74163557 | Msa0224300:intron | 35.0% | |
| ! | CATAGCTTGCATATACAAAG+AGG | + | chr2_1:74163596-74163615 | None:intergenic | 35.0% |
| !! | AGGGATTTGTTCTTTTTGAG+GGG | - | chr2_1:74163812-74163831 | Msa0224300:CDS | 35.0% |
| GGAAAAATGTACCCACTTTA+GGG | - | chr2_1:74163833-74163852 | Msa0224300:intron | 35.0% | |
| ATGTGAGCAATCACAATGAA+TGG | - | chr2_1:74163928-74163947 | Msa0224300:intron | 35.0% | |
| GCAATCACAATGAATGGAAA+TGG | - | chr2_1:74163934-74163953 | Msa0224300:intron | 35.0% | |
| ! | GTTGTTTCCATTTGACATCA+GGG | - | chr2_1:74163956-74163975 | Msa0224300:intron | 35.0% |
| TGAATTAGTCACGTAACTCA+AGG | - | chr2_1:74164054-74164073 | Msa0224300:intron | 35.0% | |
| AACTGCATACTGCAATATAG+TGG | + | chr2_1:74164296-74164315 | None:intergenic | 35.0% | |
| GGATTGTTACATGGATCAAA+CGG | - | chr2_1:74164563-74164582 | Msa0224300:intron | 35.0% | |
| TTCTGTGAACATAGAGTTGA+GGG | + | chr2_1:74164699-74164718 | None:intergenic | 35.0% | |
| TTTCTGTGAACATAGAGTTG+AGG | + | chr2_1:74164700-74164719 | None:intergenic | 35.0% | |
| ATTCTTATCCTCTATTACGC+AGG | - | chr2_1:74164839-74164858 | Msa0224300:intron | 35.0% | |
| ! | ATATTTCGCCTTTTTACCCA+TGG | - | chr2_1:74164947-74164966 | Msa0224300:intron | 35.0% |
| AACAAAGGCTTTACTATGCA+AGG | - | chr2_1:74165309-74165328 | Msa0224300:intron | 35.0% | |
| ! | AACAAACCTGTTGATGAAGT+CGG | + | chr2_1:74165354-74165373 | None:intergenic | 35.0% |
| !! | TTCATCAACAGGTTTGTTGT+TGG | - | chr2_1:74165356-74165375 | Msa0224300:intron | 35.0% |
| ATCAGAGGTTTCTGCAATAA+AGG | + | chr2_1:74165404-74165423 | None:intergenic | 35.0% | |
| ACTTTCACCAGCATACAAAA+AGG | - | chr2_1:74165525-74165544 | Msa0224300:intron | 35.0% | |
| ATTCTTGTAGCTAGGTTGTT+TGG | - | chr2_1:74165621-74165640 | Msa0224300:CDS | 35.0% | |
| TTGATGAAGATGCTTGAACT+TGG | - | chr2_1:74165708-74165727 | Msa0224300:CDS | 35.0% | |
| AAACCAAAATAGGGAAGATG+TGG | + | chr2_1:74165894-74165913 | None:intergenic | 35.0% | |
| !!! | CATCTTCCCTATTTTGGTTT+TGG | - | chr2_1:74165894-74165913 | Msa0224300:CDS | 35.0% |
| !!! | TTCCCTATTTTGGTTTTGGA+GGG | - | chr2_1:74165898-74165917 | Msa0224300:CDS | 35.0% |
| TATCTATAGTGTACTGTCAC+AGG | - | chr2_1:74166053-74166072 | Msa0224300:exon | 35.0% | |
| ! | TGTCACAGGAATGTTCTTTT+TGG | - | chr2_1:74166067-74166086 | Msa0224300:exon | 35.0% |
| !!! | TTCTTTCCATGTGCCATTTT+TGG | - | chr2_1:74166090-74166109 | Msa0224300:five_prime_UTR | 35.0% |
| AAACAACCAAAAATGGCACA+TGG | + | chr2_1:74166099-74166118 | None:intergenic | 35.0% | |
| !!! | GTGCCATTTTTGGTTGTTTA+TGG | - | chr2_1:74166100-74166119 | Msa0224300:five_prime_UTR | 35.0% |
| CTATACTCCAAGTCCAAGTT+AGG | + | chr2_1:74162534-74162553 | None:intergenic | 40.0% | |
| TGTAGAAGACTCCATGGAAA+TGG | + | chr2_1:74162630-74162649 | None:intergenic | 40.0% | |
| TGGAAGAGAGGATTTGAAGA+AGG | + | chr2_1:74162653-74162672 | None:intergenic | 40.0% | |
| GTGATGCAAAGAGGAAAATG+GGG | + | chr2_1:74162694-74162713 | None:intergenic | 40.0% | |
| GAGTGATGCAAAGAGGAAAA+TGG | + | chr2_1:74162696-74162715 | None:intergenic | 40.0% | |
| GAGAATGGTTAGAGAGAGAA+GGG | + | chr2_1:74162720-74162739 | None:intergenic | 40.0% | |
| AGAGAATGGTTAGAGAGAGA+AGG | + | chr2_1:74162721-74162740 | None:intergenic | 40.0% | |
| ATAAATGGGTCCGGCTAATT+GGG | + | chr2_1:74162829-74162848 | None:intergenic | 40.0% | |
| !! | TTCAGCTTTGGAAGTTCCAT+CGG | - | chr2_1:74162919-74162938 | Msa0224300:CDS | 40.0% |
| TTCCATCGGAGAAGAAAAAG+AGG | - | chr2_1:74162933-74162952 | Msa0224300:CDS | 40.0% | |
| ! | TTCCTCTTTTTCTTCTCCGA+TGG | + | chr2_1:74162938-74162957 | None:intergenic | 40.0% |
| ! | AGTGAAGAGTGTGTGAAAAC+GGG | - | chr2_1:74162998-74163017 | Msa0224300:intron | 40.0% |
| ! | CTTGCCACTTGGTATATGTT+TGG | + | chr2_1:74163545-74163564 | None:intergenic | 40.0% |
| !!! | TGGATCTGTTTTGACAGAAG+AGG | - | chr2_1:74163782-74163801 | Msa0224300:intron | 40.0% |
| !!! | TCTGTTTTGACAGAAGAGGA+TGG | - | chr2_1:74163786-74163805 | Msa0224300:intron | 40.0% |
| !!! | CTGTTTTGACAGAAGAGGAT+GGG | - | chr2_1:74163787-74163806 | Msa0224300:intron | 40.0% |
| GGGAAAAATGTACCCACTTT+AGG | - | chr2_1:74163832-74163851 | Msa0224300:intron | 40.0% | |
| ! | CTTTTCACTCACCCTAAAGT+GGG | + | chr2_1:74163847-74163866 | None:intergenic | 40.0% |
| ! | ACTTTTCACTCACCCTAAAG+TGG | + | chr2_1:74163848-74163867 | None:intergenic | 40.0% |
| ! | GGTTGTTTCCATTTGACATC+AGG | - | chr2_1:74163955-74163974 | Msa0224300:intron | 40.0% |
| AAAGCCATTTACCACTAGTG+TGG | - | chr2_1:74164542-74164561 | Msa0224300:intron | 40.0% | |
| CAATCCACACTAGTGGTAAA+TGG | + | chr2_1:74164549-74164568 | None:intergenic | 40.0% | |
| CATGTAACAATCCACACTAG+TGG | + | chr2_1:74164556-74164575 | None:intergenic | 40.0% | |
| ! | CACTAGTGTGGATTGTTACA+TGG | - | chr2_1:74164554-74164573 | Msa0224300:intron | 40.0% |
| ATGCTGGTGAAAGTTTAAGC+TGG | + | chr2_1:74165519-74165538 | None:intergenic | 40.0% | |
| TGTAGCTAGGTTGTTTGGTT+TGG | - | chr2_1:74165626-74165645 | Msa0224300:CDS | 40.0% | |
| GTTCAAGCATCTTCATCAAG+AGG | + | chr2_1:74165707-74165726 | None:intergenic | 40.0% | |
| GAAGGAAAAACTGTGTGAAC+AGG | - | chr2_1:74165743-74165762 | Msa0224300:CDS | 40.0% | |
| ! | AAGCCACATCTTCCCTATTT+TGG | - | chr2_1:74165888-74165907 | Msa0224300:CDS | 40.0% |
| !!! | CTTCCCTATTTTGGTTTTGG+AGG | - | chr2_1:74165897-74165916 | Msa0224300:CDS | 40.0% |
| !!! | TCCCTATTTTGGTTTTGGAG+GGG | - | chr2_1:74165899-74165918 | Msa0224300:CDS | 40.0% |
| TCCCCTCCAAAACCAAAATA+GGG | + | chr2_1:74165903-74165922 | None:intergenic | 40.0% | |
| TTCCCCTCCAAAACCAAAAT+AGG | + | chr2_1:74165904-74165923 | None:intergenic | 40.0% | |
| !!! | TATTTTGGTTTTGGAGGGGA+AGG | - | chr2_1:74165903-74165922 | Msa0224300:CDS | 40.0% |
| !!! | ATTTTGGTTTTGGAGGGGAA+GGG | - | chr2_1:74165904-74165923 | Msa0224300:CDS | 40.0% |
| AAAACCGCCTAACTTGGACT+TGG | - | chr2_1:74162524-74162543 | Msa0224300:three_prime_UTR | 45.0% | |
| TACTCCAAGTCCAAGTTAGG+CGG | + | chr2_1:74162531-74162550 | None:intergenic | 45.0% | |
| ! | AGAAGGTGTAGAAGACTCCA+TGG | + | chr2_1:74162636-74162655 | None:intergenic | 45.0% |
| GGTGGTGCATTTGAAAGAGA+TGG | + | chr2_1:74162673-74162692 | None:intergenic | 45.0% | |
| ATGCAAAGAGGAAAATGGGG+TGG | + | chr2_1:74162691-74162710 | None:intergenic | 45.0% | |
| !!! | TTGGTTGTTTTTGGGGGGTT+TGG | + | chr2_1:74162768-74162787 | None:intergenic | 45.0% |
| GATAAATGGGTCCGGCTAAT+TGG | + | chr2_1:74162830-74162849 | None:intergenic | 45.0% | |
| TACCCTCTGATTCCGCTAAA+TGG | - | chr2_1:74162873-74162892 | Msa0224300:CDS | 45.0% | |
| ACCCTCTGATTCCGCTAAAT+GGG | - | chr2_1:74162874-74162893 | Msa0224300:CDS | 45.0% | |
| GAACAAGGTAGCCCATTTAG+CGG | + | chr2_1:74162888-74162907 | None:intergenic | 45.0% | |
| GAACTTCCAAAGCTGAATCC+GGG | + | chr2_1:74162916-74162935 | None:intergenic | 45.0% | |
| GGAACTTCCAAAGCTGAATC+CGG | + | chr2_1:74162917-74162936 | None:intergenic | 45.0% | |
| CTGTGGCAGAGTCAATTTCT+TGG | + | chr2_1:74163128-74163147 | None:intergenic | 45.0% | |
| ! | CAAGAAATTGACTCTGCCAC+AGG | - | chr2_1:74163126-74163145 | Msa0224300:intron | 45.0% |
| TTGACAGAAGAGGATGGGAT+AGG | - | chr2_1:74163792-74163811 | Msa0224300:CDS | 45.0% | |
| TGACAGAAGAGGATGGGATA+GGG | - | chr2_1:74163793-74163812 | Msa0224300:CDS | 45.0% | |
| TTCCATTTGACATCAGGGAG+TGG | - | chr2_1:74163961-74163980 | Msa0224300:intron | 45.0% | |
| TACCACTCCCTGATGTCAAA+TGG | + | chr2_1:74163966-74163985 | None:intergenic | 45.0% | |
| GTAACTCAAGGCGATGTTCA+GGG | - | chr2_1:74164066-74164085 | Msa0224300:intron | 45.0% | |
| ACCATCCAGATGCATTCAGA+AGG | + | chr2_1:74164115-74164134 | None:intergenic | 45.0% | |
| GCAGTATGCAGTTATGGCTA+TGG | - | chr2_1:74164303-74164322 | Msa0224300:intron | 45.0% | |
| ! | TGCTCTCTCTCATTTGGAGT+TGG | - | chr2_1:74164724-74164743 | Msa0224300:intron | 45.0% |
| !! | AGTAGCTTGGTAATGCTACG+TGG | - | chr2_1:74164758-74164777 | Msa0224300:intron | 45.0% |
| ! | TTTCGACCGACTTCATCAAC+AGG | - | chr2_1:74165345-74165364 | Msa0224300:intron | 45.0% |
| GAAGGGAGAGTGATGCAAAG+AGG | + | chr2_1:74162703-74162722 | None:intergenic | 50.0% | |
| ! | CTAATTGGGTCGGGTTGTGA+AGG | + | chr2_1:74162815-74162834 | None:intergenic | 50.0% |
| GCCCATTTAGCGGAATCAGA+GGG | + | chr2_1:74162878-74162897 | None:intergenic | 50.0% | |
| AGCCCATTTAGCGGAATCAG+AGG | + | chr2_1:74162879-74162898 | None:intergenic | 50.0% | |
| CGTAACTCAAGGCGATGTTC+AGG | - | chr2_1:74164065-74164084 | Msa0224300:intron | 50.0% | |
| ACTCGCCTTCTGAATGCATC+TGG | - | chr2_1:74164107-74164126 | Msa0224300:intron | 50.0% | |
| GCCTTCTGAATGCATCTGGA+TGG | - | chr2_1:74164111-74164130 | Msa0224300:intron | 50.0% | |
| CCTCTATTACGCAGGTTGTC+CGG | - | chr2_1:74164847-74164866 | Msa0224300:intron | 50.0% | |
| CACAACCCGACCCAATTAGC+CGG | - | chr2_1:74162816-74162835 | Msa0224300:intron | 55.0% | |
| ATGGGTCCGGCTAATTGGGT+CGG | + | chr2_1:74162825-74162844 | None:intergenic | 55.0% | |
| TGAATCCGGGTCGTCGAACA+AGG | + | chr2_1:74162903-74162922 | None:intergenic | 55.0% | |
| CCGGACAACCTGCGTAATAG+AGG | + | chr2_1:74164850-74164869 | None:intergenic | 55.0% | |
| GCTTGAACTTGGAGTGTGCG+CGG | - | chr2_1:74165719-74165738 | Msa0224300:CDS | 55.0% | |
| TGGGTCCGGCTAATTGGGTC+GGG | + | chr2_1:74162824-74162843 | None:intergenic | 60.0% | |
| GGCTACCTTGTTCGACGACC+CGG | - | chr2_1:74162895-74162914 | Msa0224300:CDS | 60.0% | |
| CGACGACCCGGATTCAGCTT+TGG | - | chr2_1:74162907-74162926 | Msa0224300:CDS | 60.0% | |
| CTCAAGGCGATGTTCAGGGC+AGG | - | chr2_1:74164070-74164089 | Msa0224300:intron | 60.0% | |
| AAGGCGATGTTCAGGGCAGG+CGG | - | chr2_1:74164073-74164092 | Msa0224300:intron | 60.0% | |
| ACTTGGAGTGTGCGCGGAGA+AGG | - | chr2_1:74165725-74165744 | Msa0224300:CDS | 60.0% | |
| CGATGTTCAGGGCAGGCGGT+GGG | - | chr2_1:74164077-74164096 | Msa0224300:intron | 65.0% | |
| GATGTTCAGGGCAGGCGGTG+GGG | - | chr2_1:74164078-74164097 | Msa0224300:intron | 65.0% | |
| GCGATGTTCAGGGCAGGCGG+TGG | - | chr2_1:74164076-74164095 | Msa0224300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 74162522 | 74166182 | 74162522 | ID=Msa0224300;Name=Msa0224300 |
| chr2_1 | mRNA | 74162522 | 74166182 | 74162522 | ID=Msa0224300-mRNA-1;Parent=Msa0224300;Name=Msa0224300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=113|1|1|1|1|1|6|174|304 |
| chr2_1 | exon | 74162522 | 74162732 | 74162522 | ID=Msa0224300-mRNA-1:exon:21928;Parent=Msa0224300-mRNA-1 |
| chr2_1 | exon | 74162863 | 74162987 | 74162863 | ID=Msa0224300-mRNA-1:exon:21927;Parent=Msa0224300-mRNA-1 |
| chr2_1 | exon | 74163158 | 74163256 | 74163158 | ID=Msa0224300-mRNA-1:exon:21926;Parent=Msa0224300-mRNA-1 |
| chr2_1 | exon | 74163338 | 74163425 | 74163338 | ID=Msa0224300-mRNA-1:exon:21925;Parent=Msa0224300-mRNA-1 |
| chr2_1 | exon | 74163791 | 74163843 | 74163791 | ID=Msa0224300-mRNA-1:exon:21924;Parent=Msa0224300-mRNA-1 |
| chr2_1 | exon | 74165557 | 74166182 | 74165557 | ID=Msa0224300-mRNA-1:exon:21923;Parent=Msa0224300-mRNA-1 |
| chr2_1 | five_prime_UTR | 74166070 | 74166182 | 74166070 | ID=Msa0224300-mRNA-1:five_prime_utr;Parent=Msa0224300-mRNA-1 |
| chr2_1 | CDS | 74165557 | 74166069 | 74165557 | ID=Msa0224300-mRNA-1:cds;Parent=Msa0224300-mRNA-1 |
| chr2_1 | CDS | 74163791 | 74163843 | 74163791 | ID=Msa0224300-mRNA-1:cds;Parent=Msa0224300-mRNA-1 |
| chr2_1 | CDS | 74163338 | 74163425 | 74163338 | ID=Msa0224300-mRNA-1:cds;Parent=Msa0224300-mRNA-1 |
| chr2_1 | CDS | 74163158 | 74163256 | 74163158 | ID=Msa0224300-mRNA-1:cds;Parent=Msa0224300-mRNA-1 |
| chr2_1 | CDS | 74162863 | 74162987 | 74162863 | ID=Msa0224300-mRNA-1:cds;Parent=Msa0224300-mRNA-1 |
| chr2_1 | CDS | 74162696 | 74162732 | 74162696 | ID=Msa0224300-mRNA-1:cds;Parent=Msa0224300-mRNA-1 |
| chr2_1 | three_prime_UTR | 74162522 | 74162695 | 74162522 | ID=Msa0224300-mRNA-1:three_prime_utr;Parent=Msa0224300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
