Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229650 | RHN77992.1 | 68.266 | 271 | 55 | 9 | 4 | 249 | 2 | 266 | 8.53e-108 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229650 | A0A396JKW1 | 68.266 | 271 | 55 | 9 | 4 | 249 | 2 | 266 | 4.07e-108 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229650 | Msa0399300 | 0.812893 | 3.370703e-51 | -8.615850e-47 |
| Msa0229650 | Msa0626280 | 0.808778 | 2.620281e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229650 | MtrunA17_Chr1g0160711 | 68.266 | 271 | 55 | 9 | 4 | 249 | 2 | 266 | 7.84e-112 | 335 |
| Msa0229650 | MtrunA17_Chr1g0160761 | 65.299 | 268 | 63 | 5 | 1 | 241 | 1 | 265 | 2.44e-105 | 319 |
| Msa0229650 | MtrunA17_Chr1g0160661 | 64.151 | 265 | 69 | 7 | 1 | 246 | 27 | 284 | 3.81e-103 | 308 |
| Msa0229650 | MtrunA17_Chr1g0160721 | 61.200 | 250 | 75 | 6 | 1 | 235 | 12 | 254 | 4.60e-89 | 277 |
| Msa0229650 | MtrunA17_Chr1g0160701 | 59.740 | 231 | 69 | 6 | 18 | 227 | 33 | 260 | 5.04e-77 | 246 |
| Msa0229650 | MtrunA17_Chr1g0160561 | 51.181 | 254 | 100 | 6 | 3 | 232 | 7 | 260 | 1.67e-67 | 221 |
| Msa0229650 | MtrunA17_Chr1g0158061 | 36.019 | 211 | 103 | 9 | 33 | 217 | 35 | 239 | 2.80e-25 | 101 |
| Msa0229650 | MtrunA17_Chr6g0467711 | 31.200 | 250 | 123 | 11 | 2 | 217 | 13 | 247 | 5.40e-25 | 103 |
| Msa0229650 | MtrunA17_Chr1g0158411 | 30.120 | 249 | 127 | 9 | 2 | 216 | 15 | 250 | 2.88e-24 | 101 |
| Msa0229650 | MtrunA17_Chr1g0157791 | 32.877 | 219 | 117 | 7 | 23 | 217 | 28 | 240 | 4.33e-24 | 101 |
| Msa0229650 | MtrunA17_Chr1g0158151 | 33.184 | 223 | 112 | 9 | 25 | 216 | 27 | 243 | 1.42e-23 | 99.8 |
| Msa0229650 | MtrunA17_Chr1g0158461 | 30.597 | 268 | 126 | 13 | 1 | 217 | 16 | 274 | 1.02e-22 | 95.1 |
| Msa0229650 | MtrunA17_Chr1g0157881 | 28.378 | 296 | 108 | 14 | 8 | 216 | 30 | 308 | 1.34e-21 | 94.0 |
| Msa0229650 | MtrunA17_Chr3g0088331 | 30.841 | 214 | 120 | 7 | 23 | 216 | 36 | 241 | 1.45e-21 | 91.3 |
| Msa0229650 | MtrunA17_Chr1g0158331 | 28.794 | 257 | 138 | 9 | 1 | 217 | 16 | 267 | 5.72e-21 | 90.5 |
| Msa0229650 | MtrunA17_Chr1g0158541 | 31.356 | 236 | 136 | 10 | 5 | 216 | 16 | 249 | 1.16e-20 | 91.3 |
| Msa0229650 | MtrunA17_Chr1g0158761 | 32.794 | 247 | 117 | 13 | 8 | 228 | 9 | 232 | 1.46e-20 | 90.9 |
| Msa0229650 | MtrunA17_Chr1g0157991 | 32.051 | 234 | 117 | 10 | 23 | 223 | 28 | 252 | 1.89e-20 | 90.5 |
| Msa0229650 | MtrunA17_Chr1g0158661 | 28.571 | 238 | 119 | 10 | 13 | 216 | 23 | 243 | 1.93e-20 | 90.5 |
| Msa0229650 | MtrunA17_Chr1g0157961 | 31.441 | 229 | 121 | 8 | 23 | 223 | 33 | 253 | 4.89e-20 | 87.4 |
| Msa0229650 | MtrunA17_Chr1g0158041 | 31.696 | 224 | 114 | 8 | 25 | 216 | 28 | 244 | 3.03e-19 | 87.0 |
| Msa0229650 | MtrunA17_Chr1g0158191 | 30.736 | 231 | 113 | 10 | 23 | 216 | 24 | 244 | 7.69e-19 | 85.9 |
| Msa0229650 | MtrunA17_Chr1g0158631 | 30.769 | 247 | 129 | 11 | 5 | 216 | 11 | 250 | 3.39e-18 | 84.0 |
| Msa0229650 | MtrunA17_Chr1g0157911 | 30.290 | 241 | 120 | 13 | 33 | 241 | 42 | 266 | 7.96e-18 | 82.8 |
| Msa0229650 | MtrunA17_Chr1g0158731 | 29.317 | 249 | 134 | 12 | 1 | 216 | 1 | 240 | 9.02e-18 | 81.3 |
| Msa0229650 | MtrunA17_Chr1g0157861 | 29.200 | 250 | 100 | 12 | 33 | 216 | 45 | 283 | 3.51e-17 | 80.9 |
| Msa0229650 | MtrunA17_Chr1g0158121 | 54.930 | 71 | 28 | 3 | 24 | 92 | 29 | 97 | 1.51e-15 | 71.6 |
| Msa0229650 | MtrunA17_Chr1g0158301 | 29.646 | 226 | 129 | 10 | 24 | 223 | 37 | 258 | 8.11e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTCACCATACGACTAT+TGG | 0.252740 | 2_2:+1416513 | Msa0229650:CDS |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 2_2:-1416403 | None:intergenic |
| ATAACATCAGCCACCCTTTC+CGG | 0.297512 | 2_2:+1416368 | Msa0229650:CDS |
| TACAAATCTCTGTCAGAATT+CGG | 0.307724 | 2_2:+1416745 | Msa0229650:CDS |
| TTCCTTAACGTCCTTTGTTA+TGG | 0.311343 | 2_2:+1416267 | Msa0229650:CDS |
| GGTTATTGTCCTCACATGAT+AGG | 0.347453 | 2_2:-1416432 | None:intergenic |
| TAGGAATATTCCGACCGATT+TGG | 0.348675 | 2_2:-1416646 | None:intergenic |
| AGTTTATGTATCTCACTTCT+TGG | 0.350053 | 2_2:+1416791 | Msa0229650:CDS |
| GTTTATGTATCTCACTTCTT+GGG | 0.413122 | 2_2:+1416792 | Msa0229650:CDS |
| ACAAATCTCTGTCAGAATTC+GGG | 0.418168 | 2_2:+1416746 | Msa0229650:CDS |
| TCAGAATTCGGGCTGGGAGA+CGG | 0.419258 | 2_2:+1416757 | Msa0229650:CDS |
| AACCATAGTACAAAATCAAT+TGG | 0.434683 | 2_2:-1416453 | None:intergenic |
| CATAAATAACATTTCTTGCT+CGG | 0.435753 | 2_2:+1416828 | Msa0229650:CDS |
| GCTACCACCTTTGTCGATAT+AGG | 0.444535 | 2_2:-1416665 | None:intergenic |
| CACCATAACAAAGGACGTTA+AGG | 0.446569 | 2_2:-1416269 | None:intergenic |
| TTTCGTATCGATTAAAAGCT+AGG | 0.453262 | 2_2:-1416576 | None:intergenic |
| CAGAATTCGGGCTGGGAGAC+GGG | 0.453634 | 2_2:+1416758 | Msa0229650:CDS |
| GAAAATTCTTTCTATGTTGG+TGG | 0.457954 | 2_2:+1416718 | Msa0229650:CDS |
| TACGAAAATTCTTTCTATGT+TGG | 0.479153 | 2_2:+1416715 | Msa0229650:CDS |
| TGTTGCAGGCATGTCTGCTT+GGG | 0.479549 | 2_2:+1417117 | Msa0229650:intron |
| ATCTCTGTCAGAATTCGGGC+TGG | 0.484717 | 2_2:+1416750 | Msa0229650:CDS |
| CTTAACGTCCTTTGTTATGG+TGG | 0.492509 | 2_2:+1416270 | Msa0229650:CDS |
| ATGTTGCAGGCATGTCTGCT+TGG | 0.499455 | 2_2:+1417116 | Msa0229650:intron |
| CTAATGAGCAACAAAGTGTA+TGG | 0.501571 | 2_2:+1416304 | Msa0229650:CDS |
| GTATCGATTAAAAGCTAGGT+AGG | 0.510187 | 2_2:-1416572 | None:intergenic |
| ATAGACATCTTGATTCGCTT+AGG | 0.529424 | 2_2:+1417145 | Msa0229650:CDS |
| CTCAATAGTCGGTGTAAACA+TGG | 0.530061 | 2_2:+1416892 | Msa0229650:CDS |
| CTCGATATACACAGAAAGGC+TGG | 0.536487 | 2_2:-1416942 | None:intergenic |
| TCTCTGTCAGAATTCGGGCT+GGG | 0.553185 | 2_2:+1416751 | Msa0229650:CDS |
| ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | 2_2:-1416521 | None:intergenic |
| TGCAGGCATGTCTGCTTGGG+AGG | 0.571412 | 2_2:+1417120 | Msa0229650:intron |
| ATCCATAAAACATCATATGA+CGG | 0.575198 | 2_2:-1416855 | None:intergenic |
| CAGCCTTTCTGTGTATATCG+AGG | 0.583909 | 2_2:+1416943 | Msa0229650:CDS |
| AAACCTCGATATACACAGAA+AGG | 0.584628 | 2_2:-1416946 | None:intergenic |
| TGTATGTGAGCTGTCCAAAT+CGG | 0.592546 | 2_2:+1416632 | Msa0229650:CDS |
| CATTGACTTAAAACAATGTG+AGG | 0.613599 | 2_2:-1417173 | None:intergenic |
| GAATATTCCTATATCGACAA+AGG | 0.620306 | 2_2:+1416658 | Msa0229650:CDS |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | 2_2:+1416404 | Msa0229650:CDS |
| TATCGATTAAAAGCTAGGTA+GGG | 0.625375 | 2_2:-1416571 | None:intergenic |
| CACTATTGCCACCATAACAA+AGG | 0.625946 | 2_2:-1416278 | None:intergenic |
| TGTGAGCTGTCCAAATCGGT+CGG | 0.633761 | 2_2:+1416636 | Msa0229650:CDS |
| AACACGAGTCATGTTCAAGA+AGG | 0.638813 | 2_2:+1416335 | Msa0229650:CDS |
| GAGTCATGTTCAAGAAGGTG+CGG | 0.672916 | 2_2:+1416340 | Msa0229650:CDS |
| TATTCCTATATCGACAAAGG+TGG | 0.673405 | 2_2:+1416661 | Msa0229650:CDS |
| ATAGTCGGTGTAAACATGGT+CGG | 0.679615 | 2_2:+1416896 | Msa0229650:CDS |
| GAGGTACAACCTATCATGTG+AGG | 0.686814 | 2_2:+1416423 | Msa0229650:CDS |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 2_2:+1416394 | Msa0229650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAAATTTATGATTTTAT+CGG | - | chr2_2:1417005-1417024 | None:intergenic | 10.0% |
| !! | ATAAAATCATAAATTTCATA+TGG | + | chr2_2:1417005-1417024 | Msa0229650:intron | 10.0% |
| !!! | TATGAAATTTATGATTTTAT+CGG | - | chr2_2:1417005-1417024 | None:intergenic | 10.0% |
| !! | ATAAAATCATAAATTTCATA+TGG | + | chr2_2:1417005-1417024 | Msa0229650:intron | 10.0% |
| !!! | TTTATGGATTTGAATTTTCT+TGG | + | chr2_2:1416869-1416888 | Msa0229650:CDS | 20.0% |
| !!! | TTTATGGATTTGAATTTTCT+TGG | + | chr2_2:1416869-1416888 | Msa0229650:CDS | 20.0% |
| !!! | AACCAATTGATTTTGTACTA+TGG | + | chr2_2:1416451-1416470 | Msa0229650:CDS | 25.0% |
| ! | AACCATAGTACAAAATCAAT+TGG | - | chr2_2:1416456-1416475 | None:intergenic | 25.0% |
| !! | ATTTTGTACTATGGTTCATT+TGG | + | chr2_2:1416460-1416479 | Msa0229650:CDS | 25.0% |
| ! | TACGAAAATTCTTTCTATGT+TGG | + | chr2_2:1416715-1416734 | Msa0229650:CDS | 25.0% |
| ! | CATAAATAACATTTCTTGCT+CGG | + | chr2_2:1416828-1416847 | Msa0229650:CDS | 25.0% |
| ! | ATCCATAAAACATCATATGA+CGG | - | chr2_2:1416858-1416877 | None:intergenic | 25.0% |
| !!! | AAAATAATGTTAGGAGTGTT+TGG | - | chr2_2:1416975-1416994 | None:intergenic | 25.0% |
| !! | ATTTATGATTTTATCGGTGT+TGG | - | chr2_2:1416999-1417018 | None:intergenic | 25.0% |
| ! | TATATCGATAATAGACGATT+TGG | + | chr2_2:1417063-1417082 | Msa0229650:intron | 25.0% |
| !!! | AACCAATTGATTTTGTACTA+TGG | + | chr2_2:1416451-1416470 | Msa0229650:CDS | 25.0% |
| ! | AACCATAGTACAAAATCAAT+TGG | - | chr2_2:1416456-1416475 | None:intergenic | 25.0% |
| !! | ATTTTGTACTATGGTTCATT+TGG | + | chr2_2:1416460-1416479 | Msa0229650:CDS | 25.0% |
| ! | TACGAAAATTCTTTCTATGT+TGG | + | chr2_2:1416715-1416734 | Msa0229650:CDS | 25.0% |
| ! | CATAAATAACATTTCTTGCT+CGG | + | chr2_2:1416828-1416847 | Msa0229650:CDS | 25.0% |
| ! | ATCCATAAAACATCATATGA+CGG | - | chr2_2:1416858-1416877 | None:intergenic | 25.0% |
| !!! | AAAATAATGTTAGGAGTGTT+TGG | - | chr2_2:1416975-1416994 | None:intergenic | 25.0% |
| !! | ATTTATGATTTTATCGGTGT+TGG | - | chr2_2:1416999-1417018 | None:intergenic | 25.0% |
| ! | TATATCGATAATAGACGATT+TGG | + | chr2_2:1417063-1417082 | Msa0229650:intron | 25.0% |
| ATTGAAATCCAATAGTCGTA+TGG | - | chr2_2:1416524-1416543 | None:intergenic | 30.0% | |
| ! | TATCGATTAAAAGCTAGGTA+GGG | - | chr2_2:1416574-1416593 | None:intergenic | 30.0% |
| !! | TTTCGTATCGATTAAAAGCT+AGG | - | chr2_2:1416579-1416598 | None:intergenic | 30.0% |
| GAATATTCCTATATCGACAA+AGG | + | chr2_2:1416658-1416677 | Msa0229650:CDS | 30.0% | |
| GAAAATTCTTTCTATGTTGG+TGG | + | chr2_2:1416718-1416737 | Msa0229650:CDS | 30.0% | |
| TACAAATCTCTGTCAGAATT+CGG | + | chr2_2:1416745-1416764 | Msa0229650:CDS | 30.0% | |
| AGTTTATGTATCTCACTTCT+TGG | + | chr2_2:1416791-1416810 | Msa0229650:CDS | 30.0% | |
| GTTTATGTATCTCACTTCTT+GGG | + | chr2_2:1416792-1416811 | Msa0229650:CDS | 30.0% | |
| ! | TTCCGTCATATGATGTTTTA+TGG | + | chr2_2:1416853-1416872 | Msa0229650:CDS | 30.0% |
| ! | AATTTTCTTGGCTCAATAGT+CGG | + | chr2_2:1416881-1416900 | Msa0229650:CDS | 30.0% |
| ! | GGTGTTGGAAAAATAATGTT+AGG | - | chr2_2:1416984-1417003 | None:intergenic | 30.0% |
| TTCATATGGATTCTACCATT+TGG | + | chr2_2:1417019-1417038 | Msa0229650:intron | 30.0% | |
| TATATAGACCCATTTCCAAA+TGG | - | chr2_2:1417037-1417056 | None:intergenic | 30.0% | |
| !! | CATTGACTTAAAACAATGTG+AGG | - | chr2_2:1417176-1417195 | None:intergenic | 30.0% |
| ATTGAAATCCAATAGTCGTA+TGG | - | chr2_2:1416524-1416543 | None:intergenic | 30.0% | |
| ! | TATCGATTAAAAGCTAGGTA+GGG | - | chr2_2:1416574-1416593 | None:intergenic | 30.0% |
| !! | TTTCGTATCGATTAAAAGCT+AGG | - | chr2_2:1416579-1416598 | None:intergenic | 30.0% |
| GAATATTCCTATATCGACAA+AGG | + | chr2_2:1416658-1416677 | Msa0229650:CDS | 30.0% | |
| GAAAATTCTTTCTATGTTGG+TGG | + | chr2_2:1416718-1416737 | Msa0229650:CDS | 30.0% | |
| TACAAATCTCTGTCAGAATT+CGG | + | chr2_2:1416745-1416764 | Msa0229650:CDS | 30.0% | |
| AGTTTATGTATCTCACTTCT+TGG | + | chr2_2:1416791-1416810 | Msa0229650:CDS | 30.0% | |
| GTTTATGTATCTCACTTCTT+GGG | + | chr2_2:1416792-1416811 | Msa0229650:CDS | 30.0% | |
| ! | TTCCGTCATATGATGTTTTA+TGG | + | chr2_2:1416853-1416872 | Msa0229650:CDS | 30.0% |
| ! | AATTTTCTTGGCTCAATAGT+CGG | + | chr2_2:1416881-1416900 | Msa0229650:CDS | 30.0% |
| ! | GGTGTTGGAAAAATAATGTT+AGG | - | chr2_2:1416984-1417003 | None:intergenic | 30.0% |
| TTCATATGGATTCTACCATT+TGG | + | chr2_2:1417019-1417038 | Msa0229650:intron | 30.0% | |
| TATATAGACCCATTTCCAAA+TGG | - | chr2_2:1417037-1417056 | None:intergenic | 30.0% | |
| !! | CATTGACTTAAAACAATGTG+AGG | - | chr2_2:1417176-1417195 | None:intergenic | 30.0% |
| TTCCTTAACGTCCTTTGTTA+TGG | + | chr2_2:1416267-1416286 | Msa0229650:CDS | 35.0% | |
| CTAATGAGCAACAAAGTGTA+TGG | + | chr2_2:1416304-1416323 | Msa0229650:CDS | 35.0% | |
| !! | GTATCGATTAAAAGCTAGGT+AGG | - | chr2_2:1416575-1416594 | None:intergenic | 35.0% |
| TATTCCTATATCGACAAAGG+TGG | + | chr2_2:1416661-1416680 | Msa0229650:CDS | 35.0% | |
| ACAAATCTCTGTCAGAATTC+GGG | + | chr2_2:1416746-1416765 | Msa0229650:CDS | 35.0% | |
| AAACCTCGATATACACAGAA+AGG | - | chr2_2:1416949-1416968 | None:intergenic | 35.0% | |
| TGGATTCTACCATTTGGAAA+TGG | + | chr2_2:1417025-1417044 | Msa0229650:intron | 35.0% | |
| GGATTCTACCATTTGGAAAT+GGG | + | chr2_2:1417026-1417045 | Msa0229650:intron | 35.0% | |
| ! | ATAGACATCTTGATTCGCTT+AGG | + | chr2_2:1417145-1417164 | Msa0229650:CDS | 35.0% |
| TTCCTTAACGTCCTTTGTTA+TGG | + | chr2_2:1416267-1416286 | Msa0229650:CDS | 35.0% | |
| CTAATGAGCAACAAAGTGTA+TGG | + | chr2_2:1416304-1416323 | Msa0229650:CDS | 35.0% | |
| !! | GTATCGATTAAAAGCTAGGT+AGG | - | chr2_2:1416575-1416594 | None:intergenic | 35.0% |
| TATTCCTATATCGACAAAGG+TGG | + | chr2_2:1416661-1416680 | Msa0229650:CDS | 35.0% | |
| ACAAATCTCTGTCAGAATTC+GGG | + | chr2_2:1416746-1416765 | Msa0229650:CDS | 35.0% | |
| AAACCTCGATATACACAGAA+AGG | - | chr2_2:1416949-1416968 | None:intergenic | 35.0% | |
| TGGATTCTACCATTTGGAAA+TGG | + | chr2_2:1417025-1417044 | Msa0229650:intron | 35.0% | |
| GGATTCTACCATTTGGAAAT+GGG | + | chr2_2:1417026-1417045 | Msa0229650:intron | 35.0% | |
| ! | ATAGACATCTTGATTCGCTT+AGG | + | chr2_2:1417145-1417164 | Msa0229650:CDS | 35.0% |
| CACCATAACAAAGGACGTTA+AGG | - | chr2_2:1416272-1416291 | None:intergenic | 40.0% | |
| ! | CTTAACGTCCTTTGTTATGG+TGG | + | chr2_2:1416270-1416289 | Msa0229650:CDS | 40.0% |
| CACTATTGCCACCATAACAA+AGG | - | chr2_2:1416281-1416300 | None:intergenic | 40.0% | |
| AACACGAGTCATGTTCAAGA+AGG | + | chr2_2:1416335-1416354 | Msa0229650:CDS | 40.0% | |
| AAAGACAGTCCAGAAGAATG+TGG | + | chr2_2:1416394-1416413 | Msa0229650:CDS | 40.0% | |
| GGTTATTGTCCTCACATGAT+AGG | - | chr2_2:1416435-1416454 | None:intergenic | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | + | chr2_2:1416513-1416532 | Msa0229650:CDS | 40.0% | |
| TGTATGTGAGCTGTCCAAAT+CGG | + | chr2_2:1416632-1416651 | Msa0229650:CDS | 40.0% | |
| TAGGAATATTCCGACCGATT+TGG | - | chr2_2:1416649-1416668 | None:intergenic | 40.0% | |
| CTCAATAGTCGGTGTAAACA+TGG | + | chr2_2:1416892-1416911 | Msa0229650:CDS | 40.0% | |
| ATAGTCGGTGTAAACATGGT+CGG | + | chr2_2:1416896-1416915 | Msa0229650:CDS | 40.0% | |
| ATGTTCTGTGTGTATGTTGC+AGG | + | chr2_2:1417103-1417122 | Msa0229650:intron | 40.0% | |
| CACCATAACAAAGGACGTTA+AGG | - | chr2_2:1416272-1416291 | None:intergenic | 40.0% | |
| ! | CTTAACGTCCTTTGTTATGG+TGG | + | chr2_2:1416270-1416289 | Msa0229650:CDS | 40.0% |
| CACTATTGCCACCATAACAA+AGG | - | chr2_2:1416281-1416300 | None:intergenic | 40.0% | |
| AACACGAGTCATGTTCAAGA+AGG | + | chr2_2:1416335-1416354 | Msa0229650:CDS | 40.0% | |
| AAAGACAGTCCAGAAGAATG+TGG | + | chr2_2:1416394-1416413 | Msa0229650:CDS | 40.0% | |
| GGTTATTGTCCTCACATGAT+AGG | - | chr2_2:1416435-1416454 | None:intergenic | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | + | chr2_2:1416513-1416532 | Msa0229650:CDS | 40.0% | |
| TGTATGTGAGCTGTCCAAAT+CGG | + | chr2_2:1416632-1416651 | Msa0229650:CDS | 40.0% | |
| TAGGAATATTCCGACCGATT+TGG | - | chr2_2:1416649-1416668 | None:intergenic | 40.0% | |
| CTCAATAGTCGGTGTAAACA+TGG | + | chr2_2:1416892-1416911 | Msa0229650:CDS | 40.0% | |
| ATAGTCGGTGTAAACATGGT+CGG | + | chr2_2:1416896-1416915 | Msa0229650:CDS | 40.0% | |
| ATGTTCTGTGTGTATGTTGC+AGG | + | chr2_2:1417103-1417122 | Msa0229650:intron | 40.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | + | chr2_2:1416340-1416359 | Msa0229650:CDS | 45.0% | |
| ATAACATCAGCCACCCTTTC+CGG | + | chr2_2:1416368-1416387 | Msa0229650:CDS | 45.0% | |
| ! | GACTGTCTTTTAGCCGGAAA+GGG | - | chr2_2:1416384-1416403 | None:intergenic | 45.0% |
| ! | CTTCTGGACTGTCTTTTAGC+CGG | - | chr2_2:1416390-1416409 | None:intergenic | 45.0% |
| CTCTTGTCACCACATTCTTC+TGG | - | chr2_2:1416406-1416425 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | + | chr2_2:1416404-1416423 | Msa0229650:CDS | 45.0% | |
| GAGGTACAACCTATCATGTG+AGG | + | chr2_2:1416423-1416442 | Msa0229650:CDS | 45.0% | |
| GCTACCACCTTTGTCGATAT+AGG | - | chr2_2:1416668-1416687 | None:intergenic | 45.0% | |
| CTCGATATACACAGAAAGGC+TGG | - | chr2_2:1416945-1416964 | None:intergenic | 45.0% | |
| CAGCCTTTCTGTGTATATCG+AGG | + | chr2_2:1416943-1416962 | Msa0229650:CDS | 45.0% | |
| GAGTCATGTTCAAGAAGGTG+CGG | + | chr2_2:1416340-1416359 | Msa0229650:CDS | 45.0% | |
| ATAACATCAGCCACCCTTTC+CGG | + | chr2_2:1416368-1416387 | Msa0229650:CDS | 45.0% | |
| ! | GACTGTCTTTTAGCCGGAAA+GGG | - | chr2_2:1416384-1416403 | None:intergenic | 45.0% |
| ! | CTTCTGGACTGTCTTTTAGC+CGG | - | chr2_2:1416390-1416409 | None:intergenic | 45.0% |
| CTCTTGTCACCACATTCTTC+TGG | - | chr2_2:1416406-1416425 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | + | chr2_2:1416404-1416423 | Msa0229650:CDS | 45.0% | |
| GAGGTACAACCTATCATGTG+AGG | + | chr2_2:1416423-1416442 | Msa0229650:CDS | 45.0% | |
| GCTACCACCTTTGTCGATAT+AGG | - | chr2_2:1416668-1416687 | None:intergenic | 45.0% | |
| CTCGATATACACAGAAAGGC+TGG | - | chr2_2:1416945-1416964 | None:intergenic | 45.0% | |
| CAGCCTTTCTGTGTATATCG+AGG | + | chr2_2:1416943-1416962 | Msa0229650:CDS | 45.0% | |
| ! | TGTCTTTTAGCCGGAAAGGG+TGG | - | chr2_2:1416381-1416400 | None:intergenic | 50.0% |
| ! | GGACTGTCTTTTAGCCGGAA+AGG | - | chr2_2:1416385-1416404 | None:intergenic | 50.0% |
| TGTGAGCTGTCCAAATCGGT+CGG | + | chr2_2:1416636-1416655 | Msa0229650:CDS | 50.0% | |
| ATCTCTGTCAGAATTCGGGC+TGG | + | chr2_2:1416750-1416769 | Msa0229650:CDS | 50.0% | |
| TCTCTGTCAGAATTCGGGCT+GGG | + | chr2_2:1416751-1416770 | Msa0229650:CDS | 50.0% | |
| ATGTTGCAGGCATGTCTGCT+TGG | + | chr2_2:1417116-1417135 | Msa0229650:intron | 50.0% | |
| TGTTGCAGGCATGTCTGCTT+GGG | + | chr2_2:1417117-1417136 | Msa0229650:intron | 50.0% | |
| ! | TGTCTTTTAGCCGGAAAGGG+TGG | - | chr2_2:1416381-1416400 | None:intergenic | 50.0% |
| ! | GGACTGTCTTTTAGCCGGAA+AGG | - | chr2_2:1416385-1416404 | None:intergenic | 50.0% |
| TGTGAGCTGTCCAAATCGGT+CGG | + | chr2_2:1416636-1416655 | Msa0229650:CDS | 50.0% | |
| ATCTCTGTCAGAATTCGGGC+TGG | + | chr2_2:1416750-1416769 | Msa0229650:CDS | 50.0% | |
| TCTCTGTCAGAATTCGGGCT+GGG | + | chr2_2:1416751-1416770 | Msa0229650:CDS | 50.0% | |
| ATGTTGCAGGCATGTCTGCT+TGG | + | chr2_2:1417116-1417135 | Msa0229650:intron | 50.0% | |
| TGTTGCAGGCATGTCTGCTT+GGG | + | chr2_2:1417117-1417136 | Msa0229650:intron | 50.0% | |
| ! | TCAGAATTCGGGCTGGGAGA+CGG | + | chr2_2:1416757-1416776 | Msa0229650:CDS | 55.0% |
| ! | TCAGAATTCGGGCTGGGAGA+CGG | + | chr2_2:1416757-1416776 | Msa0229650:CDS | 55.0% |
| ! | CAGAATTCGGGCTGGGAGAC+GGG | + | chr2_2:1416758-1416777 | Msa0229650:CDS | 60.0% |
| TGCAGGCATGTCTGCTTGGG+AGG | + | chr2_2:1417120-1417139 | Msa0229650:intron | 60.0% | |
| ! | CAGAATTCGGGCTGGGAGAC+GGG | + | chr2_2:1416758-1416777 | Msa0229650:CDS | 60.0% |
| TGCAGGCATGTCTGCTTGGG+AGG | + | chr2_2:1417120-1417139 | Msa0229650:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1416262 | 1417219 | 1416262 | ID=Msa0229650;Name=Msa0229650 |
| chr2_2 | mRNA | 1416262 | 1417219 | 1416262 | ID=Msa0229650-mRNA-1;Parent=Msa0229650;Name=Msa0229650-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|0.5|1|1|2|0|265 |
| chr2_2 | exon | 1416262 | 1416964 | 1416262 | ID=Msa0229650-mRNA-1:exon:475;Parent=Msa0229650-mRNA-1 |
| chr2_2 | exon | 1417125 | 1417219 | 1417125 | ID=Msa0229650-mRNA-1:exon:476;Parent=Msa0229650-mRNA-1 |
| chr2_2 | CDS | 1416262 | 1416964 | 1416262 | ID=Msa0229650-mRNA-1:cds;Parent=Msa0229650-mRNA-1 |
| chr2_2 | CDS | 1417125 | 1417219 | 1417125 | ID=Msa0229650-mRNA-1:cds;Parent=Msa0229650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
