Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0232840 | XP_003593358.1 | 86.420 | 162 | 22 | 0 | 1 | 162 | 1 | 162 | 2.13e-104 | 306 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0232840 | sp|P09042|PR1C_TOBAC | 59.509 | 163 | 62 | 3 | 1 | 162 | 9 | 168 | 1.22e-66 | 203 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0232840 | G7IFD1 | 86.420 | 162 | 22 | 0 | 1 | 162 | 1 | 162 | 1.02e-104 | 306 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0190640 | Msa0232840 | 0.843412 | 1.423799e-58 | -8.615850e-47 |
Msa0232840 | Msa0232910 | 0.853309 | 2.601592e-61 | -8.615850e-47 |
Msa0232840 | Msa0272190 | 0.880638 | 4.653354e-70 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0232840 | MtrunA17_Chr2g0280291 | 86.420 | 162 | 22 | 0 | 1 | 162 | 274 | 435 | 3.94e-105 | 307 |
Msa0232840 | MtrunA17_Chr2g0280291 | 83.974 | 156 | 22 | 2 | 1 | 156 | 1 | 153 | 9.39e-91 | 270 |
Msa0232840 | MtrunA17_Chr2g0281271 | 84.722 | 144 | 22 | 0 | 19 | 162 | 1 | 144 | 1.13e-93 | 268 |
Msa0232840 | MtrunA17_Chr2g0280331 | 67.456 | 169 | 44 | 7 | 1 | 162 | 1 | 165 | 6.87e-77 | 226 |
Msa0232840 | MtrunA17_Chr2g0280311 | 70.779 | 154 | 38 | 4 | 14 | 162 | 14 | 165 | 2.27e-76 | 224 |
Msa0232840 | MtrunA17_Chr2g0280301 | 68.519 | 162 | 24 | 3 | 1 | 162 | 1 | 135 | 3.78e-70 | 208 |
Msa0232840 | MtrunA17_Chr2g0280351 | 60.000 | 170 | 58 | 5 | 1 | 162 | 1 | 168 | 2.34e-68 | 204 |
Msa0232840 | MtrunA17_Chr2g0295371 | 54.938 | 162 | 71 | 1 | 1 | 162 | 5 | 164 | 8.59e-67 | 201 |
Msa0232840 | MtrunA17_Chr2g0280321 | 59.036 | 166 | 61 | 5 | 1 | 162 | 1 | 163 | 8.40e-65 | 195 |
Msa0232840 | MtrunA17_Chr4g0049151 | 56.886 | 167 | 64 | 4 | 1 | 162 | 1 | 164 | 3.59e-60 | 184 |
Msa0232840 | MtrunA17_Chr2g0280341 | 53.086 | 162 | 68 | 5 | 6 | 162 | 179 | 337 | 1.07e-51 | 167 |
Msa0232840 | MtrunA17_Chr2g0280341 | 56.338 | 142 | 55 | 4 | 1 | 137 | 1 | 140 | 1.36e-44 | 149 |
Msa0232840 | MtrunA17_Chr2g0280281 | 46.541 | 159 | 76 | 4 | 9 | 162 | 4 | 158 | 9.23e-51 | 159 |
Msa0232840 | MtrunA17_Chr4g0049191 | 46.012 | 163 | 83 | 4 | 1 | 162 | 1 | 159 | 1.27e-48 | 154 |
Msa0232840 | MtrunA17_Chr4g0072781 | 51.111 | 135 | 63 | 2 | 29 | 162 | 41 | 173 | 7.69e-45 | 145 |
Msa0232840 | MtrunA17_Chr4g0072791 | 45.652 | 138 | 71 | 3 | 28 | 162 | 70 | 206 | 2.37e-41 | 137 |
Msa0232840 | MtrunA17_Chr1g0181941 | 38.686 | 137 | 79 | 4 | 28 | 161 | 73 | 207 | 1.66e-32 | 115 |
Msa0232840 | MtrunA17_Chr8g0373921 | 37.681 | 138 | 82 | 4 | 28 | 162 | 36 | 172 | 1.12e-26 | 99.0 |
Msa0232840 | MtrunA17_Chr5g0403201 | 33.813 | 139 | 88 | 3 | 28 | 162 | 47 | 185 | 8.28e-25 | 94.4 |
Msa0232840 | MtrunA17_Chr5g0403191 | 30.851 | 94 | 60 | 3 | 74 | 162 | 10 | 103 | 4.42e-13 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0232840 | AT4G33720.1 | 59.627 | 161 | 62 | 2 | 2 | 162 | 6 | 163 | 3.36e-67 | 202 |
Msa0232840 | AT2G14580.1 | 60.976 | 164 | 57 | 4 | 1 | 162 | 3 | 161 | 2.45e-65 | 197 |
Msa0232840 | AT5G26130.1 | 57.962 | 157 | 65 | 1 | 6 | 162 | 11 | 166 | 8.57e-64 | 193 |
Msa0232840 | AT2G14610.1 | 59.236 | 157 | 59 | 3 | 6 | 162 | 10 | 161 | 1.35e-61 | 187 |
Msa0232840 | AT4G33710.1 | 61.702 | 141 | 53 | 1 | 22 | 162 | 27 | 166 | 1.94e-59 | 182 |
Msa0232840 | AT3G19690.1 | 53.459 | 159 | 67 | 4 | 6 | 162 | 8 | 161 | 3.59e-57 | 176 |
Msa0232840 | AT4G25790.1 | 53.676 | 136 | 60 | 2 | 28 | 162 | 77 | 210 | 1.69e-50 | 161 |
Msa0232840 | AT1G50060.1 | 51.807 | 166 | 71 | 5 | 1 | 162 | 1 | 161 | 8.11e-49 | 155 |
Msa0232840 | AT5G57625.1 | 52.593 | 135 | 61 | 2 | 29 | 162 | 75 | 207 | 1.01e-48 | 156 |
Msa0232840 | AT2G19990.1 | 49.635 | 137 | 67 | 1 | 26 | 162 | 42 | 176 | 2.17e-48 | 154 |
Msa0232840 | AT3G09590.1 | 48.905 | 137 | 66 | 2 | 28 | 162 | 52 | 186 | 3.75e-45 | 147 |
Msa0232840 | AT4G25780.1 | 50.725 | 138 | 64 | 3 | 28 | 162 | 54 | 190 | 4.97e-45 | 146 |
Msa0232840 | AT4G30320.1 | 45.695 | 151 | 78 | 3 | 13 | 162 | 14 | 161 | 1.35e-44 | 144 |
Msa0232840 | AT1G50050.2 | 53.614 | 166 | 69 | 5 | 1 | 162 | 1 | 162 | 1.84e-44 | 144 |
Msa0232840 | AT4G33730.1 | 52.174 | 138 | 61 | 4 | 26 | 162 | 39 | 172 | 2.49e-44 | 144 |
Msa0232840 | AT5G02730.1 | 45.985 | 137 | 70 | 2 | 28 | 162 | 59 | 193 | 1.80e-40 | 135 |
Msa0232840 | AT1G50050.1 | 52.564 | 156 | 69 | 4 | 6 | 160 | 9 | 160 | 2.53e-39 | 133 |
Msa0232840 | AT1G01310.1 | 45.588 | 136 | 70 | 3 | 28 | 162 | 87 | 219 | 9.70e-39 | 132 |
Msa0232840 | AT4G31470.1 | 46.324 | 136 | 69 | 3 | 28 | 162 | 53 | 185 | 2.44e-38 | 129 |
Msa0232840 | AT5G66590.1 | 45.000 | 140 | 68 | 3 | 29 | 162 | 49 | 185 | 5.03e-37 | 126 |
Msa0232840 | AT4G07820.1 | 43.662 | 142 | 75 | 4 | 21 | 162 | 24 | 160 | 5.71e-36 | 122 |
Msa0232840 | AT2G19970.1 | 38.971 | 136 | 70 | 6 | 26 | 152 | 35 | 166 | 3.92e-24 | 92.8 |
Msa0232840 | AT2G19980.1 | 34.706 | 170 | 90 | 8 | 3 | 162 | 7 | 165 | 4.82e-23 | 89.7 |
Find 41 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATAGTCTGTTGGTGAGTTT+TGG | 0.180317 | 2_2:-5103858 | None:intergenic |
CCGGTGGTGGTGGCCGTTAC+GGG | 0.193193 | 2_2:+5104004 | Msa0232840:CDS |
TTAGGCTTATTTCTCATTAT+TGG | 0.210544 | 2_2:+5103820 | Msa0232840:CDS |
TCCGGTGGTGGTGGCCGTTA+CGG | 0.303334 | 2_2:+5104003 | Msa0232840:CDS |
TATTAATCATGCACTTAGTA+TGG | 0.322170 | 2_2:-5104273 | None:intergenic |
TTGGTGTTGCAAATGTTGTT+TGG | 0.348141 | 2_2:+5103911 | Msa0232840:CDS |
GCCATTATACTCAGGTGGTT+TGG | 0.358578 | 2_2:+5104145 | Msa0232840:CDS |
GTTACTATTATAGTTATAAT+CGG | 0.390895 | 2_2:-5104097 | None:intergenic |
TCCAAACCACCTGAGTATAA+TGG | 0.398812 | 2_2:-5104146 | None:intergenic |
TGGTGTTGCAAATGTTGTTT+GGG | 0.411343 | 2_2:+5103912 | Msa0232840:CDS |
CTGACGTCTTGCTTCGTTGT+GGG | 0.413555 | 2_2:-5103887 | None:intergenic |
CCCGTAACGGCCACCACCAC+CGG | 0.429882 | 2_2:-5104004 | None:intergenic |
TGGAGAAACACAAAGCGTAT+TGG | 0.455942 | 2_2:+5104165 | Msa0232840:CDS |
GCACAGATGCAGTGAGGTTG+TGG | 0.462999 | 2_2:+5104061 | Msa0232840:CDS |
ATTATTATCACATTTCACTT+TGG | 0.463790 | 2_2:-5104193 | None:intergenic |
TTGATCCACTCCGGTGGTGG+TGG | 0.492178 | 2_2:+5103994 | Msa0232840:CDS |
GTGAAATGTGATAATAATAG+AGG | 0.492513 | 2_2:+5104198 | Msa0232840:CDS |
GAGAATCTAGCGTGGAGCTC+CGG | 0.500119 | 2_2:+5104027 | Msa0232840:CDS |
ATCTGTGCCACTCATGTCGC+CGG | 0.501762 | 2_2:-5104046 | None:intergenic |
CCTGACGTCTTGCTTCGTTG+TGG | 0.534137 | 2_2:-5103888 | None:intergenic |
CGATTGATCCACTCCGGTGG+TGG | 0.538844 | 2_2:+5103991 | Msa0232840:CDS |
CACAGATGCAGTGAGGTTGT+GGG | 0.544377 | 2_2:+5104062 | Msa0232840:CDS |
CGGTGGTGGTGGCCGTTACG+GGG | 0.566376 | 2_2:+5104005 | Msa0232840:CDS |
CCACAACGAAGCAAGACGTC+AGG | 0.568340 | 2_2:+5103888 | Msa0232840:CDS |
TGGGCGTTCACATAGTCTGT+TGG | 0.581596 | 2_2:-5103868 | None:intergenic |
TGGAGCTCCGGCGACATGAG+TGG | 0.603470 | 2_2:+5104039 | Msa0232840:CDS |
AGACTATGCTAATCAACGCA+AGG | 0.607234 | 2_2:+5103960 | Msa0232840:CDS |
GATCCACCAGGCAACTATGT+TGG | 0.607501 | 2_2:+5104243 | Msa0232840:CDS |
AACGGCCACCACCACCGGAG+TGG | 0.614459 | 2_2:-5103999 | None:intergenic |
TGACCAACATAGTTGCCTGG+TGG | 0.614666 | 2_2:-5104246 | None:intergenic |
GACTATGCTAATCAACGCAA+GGG | 0.626800 | 2_2:+5103961 | Msa0232840:CDS |
GTGTGGCCATTATACTCAGG+TGG | 0.627875 | 2_2:+5104140 | Msa0232840:CDS |
GATTGTCGATTGATCCACTC+CGG | 0.648727 | 2_2:+5103985 | Msa0232840:CDS |
AGTGTGTGGCCATTATACTC+AGG | 0.651003 | 2_2:+5104137 | Msa0232840:CDS |
AACGAAGCAAGACGTCAGGT+TGG | 0.655351 | 2_2:+5103892 | Msa0232840:CDS |
ACGCTAGATTCTCCCCGTAA+CGG | 0.657514 | 2_2:-5104017 | None:intergenic |
ACTTGCAATTACGATCCACC+AGG | 0.660677 | 2_2:+5104231 | Msa0232840:CDS |
GTTACGGGGAGAATCTAGCG+TGG | 0.716019 | 2_2:+5104019 | Msa0232840:CDS |
TGTCGATTGATCCACTCCGG+TGG | 0.719544 | 2_2:+5103988 | Msa0232840:CDS |
TGTGCTGCTAATAAAGTGTG+TGG | 0.730769 | 2_2:+5104123 | Msa0232840:CDS |
TGAGTGGCACAGATGCAGTG+AGG | 0.786885 | 2_2:+5104055 | Msa0232840:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTACTATTATAGTTATAAT+CGG | - | chr2_2:5104100-5104119 | None:intergenic | 15.0% |
!! | ATTATTATCACATTTCACTT+TGG | - | chr2_2:5104196-5104215 | None:intergenic | 20.0% |
!! | TTAGGCTTATTTCTCATTAT+TGG | + | chr2_2:5103820-5103839 | Msa0232840:CDS | 25.0% |
! | GTGAAATGTGATAATAATAG+AGG | + | chr2_2:5104198-5104217 | Msa0232840:CDS | 25.0% |
! | TTTTCTCTAATGTGTGTCTT+AGG | + | chr2_2:5103802-5103821 | Msa0232840:CDS | 30.0% |
!! | ATAGTCTGTTGGTGAGTTTT+GGG | - | chr2_2:5103860-5103879 | None:intergenic | 35.0% |
!! | TTGGTGTTGCAAATGTTGTT+TGG | + | chr2_2:5103911-5103930 | Msa0232840:CDS | 35.0% |
!! | TGGTGTTGCAAATGTTGTTT+GGG | + | chr2_2:5103912-5103931 | Msa0232840:CDS | 35.0% |
!! | CATAGTCTGTTGGTGAGTTT+TGG | - | chr2_2:5103861-5103880 | None:intergenic | 40.0% |
AGACTATGCTAATCAACGCA+AGG | + | chr2_2:5103960-5103979 | Msa0232840:CDS | 40.0% | |
GACTATGCTAATCAACGCAA+GGG | + | chr2_2:5103961-5103980 | Msa0232840:CDS | 40.0% | |
! | TGTGCTGCTAATAAAGTGTG+TGG | + | chr2_2:5104123-5104142 | Msa0232840:CDS | 40.0% |
TCCAAACCACCTGAGTATAA+TGG | - | chr2_2:5104149-5104168 | None:intergenic | 40.0% | |
TGGAGAAACACAAAGCGTAT+TGG | + | chr2_2:5104165-5104184 | Msa0232840:CDS | 40.0% | |
! | TTTTGACCAACATAGTTGCC+TGG | - | chr2_2:5104252-5104271 | None:intergenic | 40.0% |
! | GATTGTCGATTGATCCACTC+CGG | + | chr2_2:5103985-5104004 | Msa0232840:CDS | 45.0% |
AGTGTGTGGCCATTATACTC+AGG | + | chr2_2:5104137-5104156 | Msa0232840:CDS | 45.0% | |
GCCATTATACTCAGGTGGTT+TGG | + | chr2_2:5104145-5104164 | Msa0232840:CDS | 45.0% | |
ACTTGCAATTACGATCCACC+AGG | + | chr2_2:5104231-5104250 | Msa0232840:CDS | 45.0% | |
TGGGCGTTCACATAGTCTGT+TGG | - | chr2_2:5103871-5103890 | None:intergenic | 50.0% | |
CTGACGTCTTGCTTCGTTGT+GGG | - | chr2_2:5103890-5103909 | None:intergenic | 50.0% | |
AACGAAGCAAGACGTCAGGT+TGG | + | chr2_2:5103892-5103911 | Msa0232840:CDS | 50.0% | |
ACGCTAGATTCTCCCCGTAA+CGG | - | chr2_2:5104020-5104039 | None:intergenic | 50.0% | |
CACAGATGCAGTGAGGTTGT+GGG | + | chr2_2:5104062-5104081 | Msa0232840:CDS | 50.0% | |
GTGTGGCCATTATACTCAGG+TGG | + | chr2_2:5104140-5104159 | Msa0232840:CDS | 50.0% | |
GATCCACCAGGCAACTATGT+TGG | + | chr2_2:5104243-5104262 | Msa0232840:CDS | 50.0% | |
TGACCAACATAGTTGCCTGG+TGG | - | chr2_2:5104249-5104268 | None:intergenic | 50.0% | |
CCTGACGTCTTGCTTCGTTG+TGG | - | chr2_2:5103891-5103910 | None:intergenic | 55.0% | |
CCACAACGAAGCAAGACGTC+AGG | + | chr2_2:5103888-5103907 | Msa0232840:CDS | 55.0% | |
! | TGTCGATTGATCCACTCCGG+TGG | + | chr2_2:5103988-5104007 | Msa0232840:CDS | 55.0% |
GTTACGGGGAGAATCTAGCG+TGG | + | chr2_2:5104019-5104038 | Msa0232840:CDS | 55.0% | |
GAGAATCTAGCGTGGAGCTC+CGG | + | chr2_2:5104027-5104046 | Msa0232840:CDS | 55.0% | |
! | ATCTGTGCCACTCATGTCGC+CGG | - | chr2_2:5104049-5104068 | None:intergenic | 55.0% |
TGAGTGGCACAGATGCAGTG+AGG | + | chr2_2:5104055-5104074 | Msa0232840:CDS | 55.0% | |
GCACAGATGCAGTGAGGTTG+TGG | + | chr2_2:5104061-5104080 | Msa0232840:CDS | 55.0% | |
CGATTGATCCACTCCGGTGG+TGG | + | chr2_2:5103991-5104010 | Msa0232840:CDS | 60.0% | |
! | TTGATCCACTCCGGTGGTGG+TGG | + | chr2_2:5103994-5104013 | Msa0232840:CDS | 60.0% |
!! | TCCGGTGGTGGTGGCCGTTA+CGG | + | chr2_2:5104003-5104022 | Msa0232840:CDS | 65.0% |
TGGAGCTCCGGCGACATGAG+TGG | + | chr2_2:5104039-5104058 | Msa0232840:CDS | 65.0% | |
AACGGCCACCACCACCGGAG+TGG | - | chr2_2:5104002-5104021 | None:intergenic | 70.0% | |
CCCGTAACGGCCACCACCAC+CGG | - | chr2_2:5104007-5104026 | None:intergenic | 70.0% | |
!! | CCGGTGGTGGTGGCCGTTAC+GGG | + | chr2_2:5104004-5104023 | Msa0232840:CDS | 70.0% |
!! | CGGTGGTGGTGGCCGTTACG+GGG | + | chr2_2:5104005-5104024 | Msa0232840:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 5103793 | 5104281 | 5103793 | ID=Msa0232840;Name=Msa0232840 |
chr2_2 | mRNA | 5103793 | 5104281 | 5103793 | ID=Msa0232840-mRNA-1;Parent=Msa0232840;Name=Msa0232840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|162 |
chr2_2 | exon | 5103793 | 5104281 | 5103793 | ID=Msa0232840-mRNA-1:exon:2251;Parent=Msa0232840-mRNA-1 |
chr2_2 | CDS | 5103793 | 5104281 | 5103793 | ID=Msa0232840-mRNA-1:cds;Parent=Msa0232840-mRNA-1 |
Gene Sequence |
Protein sequence |