Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233160 | XP_003593387.1 | 95.516 | 446 | 19 | 1 | 1 | 446 | 1 | 445 | 0.0 | 875 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233160 | sp|Q9C5J4|Y3210_ARATH | 40.833 | 360 | 193 | 5 | 6 | 360 | 78 | 422 | 2.74e-83 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233160 | G7IK28 | 95.516 | 446 | 19 | 1 | 1 | 446 | 1 | 445 | 0.0 | 875 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0233160 | Msa0311390 | 0.827060 | 1.927359e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233160 | MtrunA17_Chr2g0280541 | 95.516 | 446 | 19 | 1 | 1 | 446 | 1 | 445 | 0.0 | 875 |
| Msa0233160 | MtrunA17_Chr4g0023801 | 37.137 | 482 | 254 | 13 | 3 | 446 | 75 | 545 | 1.65e-92 | 290 |
| Msa0233160 | MtrunA17_Chr1g0163311 | 29.803 | 406 | 241 | 12 | 1 | 374 | 67 | 460 | 1.65e-43 | 160 |
| Msa0233160 | MtrunA17_Chr4g0037661 | 28.678 | 401 | 256 | 8 | 1 | 376 | 74 | 469 | 2.32e-43 | 160 |
| Msa0233160 | MtrunA17_Chr1g0195911 | 27.739 | 429 | 260 | 7 | 1 | 394 | 102 | 515 | 2.80e-36 | 141 |
| Msa0233160 | MtrunA17_Chr8g0374011 | 30.673 | 401 | 230 | 8 | 1 | 359 | 106 | 500 | 4.55e-35 | 137 |
| Msa0233160 | MtrunA17_Chr1g0199631 | 30.457 | 394 | 233 | 11 | 1 | 359 | 57 | 444 | 7.12e-34 | 134 |
| Msa0233160 | MtrunA17_Chr2g0320691 | 26.700 | 397 | 248 | 10 | 1 | 359 | 91 | 482 | 2.81e-33 | 132 |
| Msa0233160 | MtrunA17_Chr1g0191711 | 27.688 | 372 | 222 | 10 | 2 | 359 | 129 | 467 | 9.54e-33 | 130 |
| Msa0233160 | MtrunA17_Chr4g0010091 | 28.462 | 390 | 234 | 8 | 2 | 359 | 101 | 477 | 1.34e-32 | 130 |
| Msa0233160 | MtrunA17_Chr2g0279481 | 26.477 | 457 | 259 | 11 | 1 | 386 | 110 | 560 | 2.99e-32 | 129 |
| Msa0233160 | MtrunA17_Chr4g0050021 | 25.166 | 453 | 275 | 6 | 1 | 392 | 110 | 559 | 8.68e-32 | 128 |
| Msa0233160 | MtrunA17_Chr2g0303541 | 28.642 | 405 | 235 | 9 | 1 | 359 | 93 | 489 | 1.03e-31 | 128 |
| Msa0233160 | MtrunA17_Chr8g0382231 | 24.283 | 453 | 263 | 12 | 1 | 402 | 119 | 542 | 2.51e-31 | 126 |
| Msa0233160 | MtrunA17_Chr7g0268781 | 26.835 | 436 | 258 | 12 | 1 | 394 | 102 | 518 | 1.39e-30 | 124 |
| Msa0233160 | MtrunA17_Chr7g0245201 | 29.146 | 398 | 219 | 12 | 2 | 359 | 129 | 503 | 3.22e-30 | 123 |
| Msa0233160 | MtrunA17_Chr2g0285511 | 28.297 | 417 | 249 | 12 | 1 | 376 | 94 | 501 | 7.39e-29 | 119 |
| Msa0233160 | MtrunA17_Chr5g0401341 | 27.154 | 383 | 246 | 8 | 3 | 359 | 94 | 469 | 1.25e-27 | 115 |
| Msa0233160 | MtrunA17_Chr1g0207461 | 26.478 | 389 | 246 | 11 | 3 | 360 | 96 | 475 | 1.36e-27 | 115 |
| Msa0233160 | MtrunA17_Chr4g0076521 | 26.649 | 379 | 240 | 12 | 8 | 362 | 100 | 464 | 4.29e-27 | 114 |
| Msa0233160 | MtrunA17_Chr5g0401451 | 25.743 | 404 | 255 | 12 | 2 | 375 | 107 | 495 | 3.39e-25 | 108 |
| Msa0233160 | MtrunA17_Chr3g0108331 | 26.410 | 390 | 221 | 11 | 2 | 359 | 91 | 446 | 1.18e-24 | 106 |
| Msa0233160 | MtrunA17_Chr1g0150191 | 26.031 | 388 | 252 | 8 | 1 | 359 | 93 | 474 | 4.38e-24 | 105 |
| Msa0233160 | MtrunA17_Chr4g0053841 | 25.686 | 401 | 256 | 10 | 2 | 375 | 82 | 467 | 2.02e-23 | 103 |
| Msa0233160 | MtrunA17_Chr5g0432861 | 25.063 | 399 | 224 | 11 | 2 | 359 | 92 | 456 | 6.54e-23 | 101 |
| Msa0233160 | MtrunA17_Chr1g0181181 | 26.282 | 468 | 272 | 16 | 1 | 421 | 94 | 535 | 8.21e-23 | 101 |
| Msa0233160 | MtrunA17_Chr2g0332281 | 30.534 | 262 | 152 | 7 | 122 | 359 | 24 | 279 | 2.28e-21 | 95.9 |
| Msa0233160 | MtrunA17_Chr4g0003891 | 28.159 | 277 | 182 | 5 | 114 | 374 | 39 | 314 | 5.47e-21 | 95.1 |
| Msa0233160 | MtrunA17_Chr5g0412591 | 27.195 | 353 | 192 | 9 | 67 | 359 | 128 | 475 | 8.08e-20 | 92.0 |
| Msa0233160 | MtrunA17_Chr2g0290741 | 25.916 | 382 | 229 | 14 | 8 | 362 | 100 | 454 | 5.57e-19 | 89.4 |
| Msa0233160 | MtrunA17_Chr8g0367891 | 23.457 | 405 | 237 | 10 | 1 | 359 | 93 | 470 | 1.67e-16 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0233160 | AT3G22104.4 | 40.833 | 360 | 193 | 5 | 6 | 360 | 3 | 347 | 2.70e-85 | 268 |
| Msa0233160 | AT3G22104.2 | 40.833 | 360 | 193 | 5 | 6 | 360 | 3 | 347 | 2.70e-85 | 268 |
| Msa0233160 | AT3G22104.3 | 40.833 | 360 | 193 | 5 | 6 | 360 | 3 | 347 | 2.70e-85 | 268 |
| Msa0233160 | AT3G22104.1 | 40.833 | 360 | 193 | 5 | 6 | 360 | 78 | 422 | 2.78e-84 | 268 |
| Msa0233160 | AT3G19850.1 | 29.648 | 398 | 233 | 9 | 6 | 371 | 81 | 463 | 8.65e-47 | 169 |
| Msa0233160 | AT5G48800.1 | 29.412 | 374 | 237 | 7 | 2 | 359 | 108 | 470 | 5.76e-35 | 137 |
| Msa0233160 | AT3G08570.1 | 28.676 | 408 | 245 | 10 | 2 | 378 | 103 | 495 | 1.69e-34 | 136 |
| Msa0233160 | AT2G47860.1 | 28.916 | 415 | 243 | 10 | 1 | 378 | 100 | 499 | 2.12e-33 | 133 |
| Msa0233160 | AT5G03250.1 | 27.990 | 418 | 253 | 10 | 1 | 376 | 94 | 505 | 2.87e-33 | 132 |
| Msa0233160 | AT2G47860.3 | 28.916 | 415 | 243 | 10 | 1 | 378 | 123 | 522 | 3.36e-33 | 132 |
| Msa0233160 | AT1G50280.2 | 28.278 | 389 | 249 | 9 | 6 | 370 | 48 | 430 | 3.64e-33 | 131 |
| Msa0233160 | AT1G50280.1 | 28.278 | 389 | 249 | 9 | 6 | 370 | 81 | 463 | 4.13e-33 | 131 |
| Msa0233160 | AT5G66560.1 | 30.556 | 396 | 230 | 9 | 1 | 359 | 129 | 516 | 6.55e-33 | 132 |
| Msa0233160 | AT5G66560.4 | 30.556 | 396 | 230 | 9 | 1 | 359 | 90 | 477 | 6.55e-33 | 131 |
| Msa0233160 | AT5G66560.3 | 30.556 | 396 | 230 | 9 | 1 | 359 | 100 | 487 | 7.88e-33 | 131 |
| Msa0233160 | AT3G08660.3 | 28.788 | 396 | 239 | 9 | 2 | 378 | 40 | 411 | 3.00e-31 | 126 |
| Msa0233160 | AT3G08660.1 | 28.788 | 396 | 239 | 9 | 2 | 378 | 100 | 471 | 4.12e-31 | 126 |
| Msa0233160 | AT2G47860.5 | 30.088 | 339 | 195 | 7 | 77 | 378 | 48 | 381 | 5.64e-30 | 122 |
| Msa0233160 | AT2G47860.2 | 30.088 | 339 | 195 | 7 | 77 | 378 | 48 | 381 | 5.64e-30 | 122 |
| Msa0233160 | AT1G30440.1 | 28.288 | 403 | 243 | 8 | 1 | 359 | 94 | 494 | 1.87e-29 | 122 |
| Msa0233160 | AT5G03250.2 | 27.154 | 383 | 233 | 9 | 36 | 376 | 15 | 393 | 5.27e-29 | 119 |
| Msa0233160 | AT1G03010.2 | 26.714 | 423 | 252 | 9 | 1 | 378 | 72 | 481 | 2.75e-28 | 118 |
| Msa0233160 | AT1G03010.3 | 26.714 | 423 | 252 | 9 | 1 | 378 | 98 | 507 | 2.86e-28 | 118 |
| Msa0233160 | AT1G03010.1 | 26.714 | 423 | 252 | 9 | 1 | 378 | 99 | 508 | 3.39e-28 | 118 |
| Msa0233160 | AT3G50840.2 | 30.318 | 409 | 245 | 10 | 5 | 389 | 52 | 444 | 1.04e-27 | 115 |
| Msa0233160 | AT3G50840.3 | 30.318 | 409 | 245 | 10 | 5 | 389 | 52 | 444 | 1.04e-27 | 115 |
| Msa0233160 | AT3G50840.1 | 29.630 | 405 | 253 | 9 | 5 | 389 | 88 | 480 | 1.24e-27 | 115 |
| Msa0233160 | AT2G30520.2 | 26.992 | 389 | 223 | 12 | 2 | 359 | 49 | 407 | 1.52e-27 | 115 |
| Msa0233160 | AT2G30520.3 | 26.992 | 389 | 223 | 12 | 2 | 359 | 49 | 407 | 1.52e-27 | 115 |
| Msa0233160 | AT2G30520.1 | 26.992 | 389 | 223 | 12 | 2 | 359 | 97 | 455 | 1.82e-27 | 115 |
| Msa0233160 | AT3G44820.1 | 24.205 | 409 | 255 | 7 | 1 | 359 | 92 | 495 | 6.72e-27 | 114 |
| Msa0233160 | AT5G66560.2 | 31.111 | 360 | 203 | 9 | 1 | 323 | 129 | 480 | 9.60e-27 | 112 |
| Msa0233160 | AT3G49970.1 | 28.108 | 370 | 212 | 12 | 2 | 355 | 60 | 391 | 5.03e-26 | 110 |
| Msa0233160 | AT3G49970.2 | 28.108 | 370 | 212 | 12 | 2 | 355 | 60 | 391 | 5.03e-26 | 110 |
| Msa0233160 | AT5G67385.4 | 26.316 | 399 | 254 | 11 | 2 | 375 | 48 | 431 | 5.49e-26 | 110 |
| Msa0233160 | AT5G67385.5 | 26.316 | 399 | 254 | 11 | 2 | 375 | 48 | 431 | 5.49e-26 | 110 |
| Msa0233160 | AT5G67385.2 | 26.316 | 399 | 254 | 11 | 2 | 375 | 48 | 431 | 5.49e-26 | 110 |
| Msa0233160 | AT5G67385.3 | 26.316 | 399 | 254 | 11 | 2 | 375 | 48 | 431 | 5.49e-26 | 110 |
| Msa0233160 | AT2G47860.4 | 29.722 | 360 | 201 | 10 | 1 | 323 | 100 | 444 | 6.11e-26 | 109 |
| Msa0233160 | AT2G47860.6 | 29.722 | 360 | 201 | 10 | 1 | 323 | 123 | 467 | 6.53e-26 | 110 |
| Msa0233160 | AT5G67385.1 | 26.316 | 399 | 254 | 11 | 2 | 375 | 93 | 476 | 8.85e-26 | 110 |
| Msa0233160 | AT5G47800.3 | 26.509 | 381 | 239 | 10 | 8 | 362 | 100 | 465 | 3.16e-25 | 108 |
| Msa0233160 | AT5G47800.1 | 26.509 | 381 | 239 | 10 | 8 | 362 | 100 | 465 | 3.16e-25 | 108 |
| Msa0233160 | AT5G47800.4 | 26.509 | 381 | 239 | 10 | 8 | 362 | 100 | 465 | 3.16e-25 | 108 |
| Msa0233160 | AT5G47800.2 | 26.579 | 380 | 240 | 10 | 8 | 362 | 213 | 578 | 4.36e-25 | 108 |
| Msa0233160 | AT5G13600.1 | 25.298 | 419 | 257 | 11 | 1 | 376 | 91 | 496 | 6.72e-24 | 105 |
| Msa0233160 | AT2G23050.1 | 26.776 | 366 | 230 | 9 | 3 | 359 | 100 | 436 | 1.27e-23 | 103 |
| Msa0233160 | AT3G08660.2 | 28.324 | 346 | 209 | 8 | 2 | 330 | 100 | 423 | 6.24e-23 | 100 |
| Msa0233160 | AT2G14820.2 | 24.156 | 385 | 259 | 6 | 3 | 359 | 95 | 474 | 2.57e-22 | 100 |
| Msa0233160 | AT2G14820.1 | 24.156 | 385 | 259 | 6 | 3 | 359 | 95 | 474 | 2.57e-22 | 100 |
| Msa0233160 | AT2G23050.2 | 27.931 | 290 | 186 | 7 | 79 | 359 | 45 | 320 | 1.79e-20 | 92.8 |
| Msa0233160 | AT5G10250.2 | 28.378 | 222 | 140 | 4 | 174 | 380 | 296 | 513 | 7.99e-20 | 92.8 |
| Msa0233160 | AT4G37590.1 | 26.158 | 367 | 240 | 9 | 3 | 359 | 106 | 451 | 1.52e-19 | 91.7 |
| Msa0233160 | AT3G26490.1 | 25.336 | 446 | 272 | 13 | 1 | 396 | 95 | 529 | 5.00e-19 | 90.1 |
| Msa0233160 | AT3G26490.3 | 25.336 | 446 | 272 | 13 | 1 | 396 | 95 | 529 | 5.00e-19 | 90.1 |
| Msa0233160 | AT3G26490.4 | 25.336 | 446 | 272 | 13 | 1 | 396 | 95 | 529 | 5.00e-19 | 90.1 |
| Msa0233160 | AT5G67440.3 | 25.532 | 376 | 250 | 10 | 3 | 359 | 98 | 462 | 9.57e-19 | 89.4 |
| Msa0233160 | AT5G67440.1 | 25.532 | 376 | 250 | 10 | 3 | 359 | 98 | 462 | 9.57e-19 | 89.4 |
| Msa0233160 | AT5G67440.2 | 25.532 | 376 | 250 | 10 | 3 | 359 | 61 | 425 | 1.34e-18 | 88.6 |
| Msa0233160 | AT5G10250.1 | 28.436 | 211 | 139 | 4 | 174 | 380 | 296 | 498 | 2.41e-18 | 88.2 |
| Msa0233160 | AT1G52770.1 | 32.292 | 192 | 117 | 3 | 190 | 374 | 119 | 304 | 1.14e-17 | 85.5 |
| Msa0233160 | AT5G64330.1 | 30.198 | 202 | 109 | 3 | 190 | 359 | 390 | 591 | 1.39e-17 | 85.9 |
| Msa0233160 | AT5G64330.3 | 30.198 | 202 | 109 | 3 | 190 | 359 | 331 | 532 | 1.51e-17 | 85.5 |
| Msa0233160 | AT5G64330.2 | 30.198 | 202 | 109 | 3 | 190 | 359 | 390 | 591 | 1.76e-17 | 85.5 |
| Msa0233160 | AT5G48130.1 | 24.931 | 361 | 251 | 9 | 7 | 359 | 107 | 455 | 8.23e-17 | 83.6 |
| Msa0233160 | AT4G31820.2 | 23.454 | 388 | 238 | 12 | 3 | 359 | 42 | 401 | 1.26e-16 | 82.4 |
| Msa0233160 | AT4G31820.1 | 23.454 | 388 | 238 | 12 | 3 | 359 | 95 | 454 | 1.33e-16 | 82.8 |
| Msa0233160 | AT3G15570.1 | 33.333 | 177 | 105 | 3 | 190 | 359 | 124 | 294 | 2.01e-16 | 81.6 |
| Msa0233160 | AT1G67900.5 | 23.684 | 418 | 249 | 11 | 1 | 359 | 89 | 495 | 7.93e-15 | 77.4 |
| Msa0233160 | AT1G67900.1 | 23.684 | 418 | 249 | 11 | 1 | 359 | 89 | 495 | 7.93e-15 | 77.4 |
| Msa0233160 | AT1G67900.3 | 23.684 | 418 | 249 | 11 | 1 | 359 | 89 | 495 | 7.93e-15 | 77.4 |
| Msa0233160 | AT1G67900.6 | 23.684 | 418 | 249 | 11 | 1 | 359 | 89 | 495 | 7.93e-15 | 77.4 |
| Msa0233160 | AT1G67900.2 | 23.684 | 418 | 249 | 11 | 1 | 359 | 89 | 495 | 7.93e-15 | 77.4 |
| Msa0233160 | AT1G67900.4 | 23.684 | 418 | 249 | 11 | 1 | 359 | 89 | 495 | 7.93e-15 | 77.4 |
| Msa0233160 | AT3G03510.1 | 24.722 | 449 | 267 | 17 | 1 | 428 | 20 | 418 | 1.02e-13 | 73.2 |
Find 73 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGTTTCATATTTGTTTC+TGG | 0.163326 | 2_2:+5479282 | Msa0233160:three_prime_UTR |
| AATAATCATGAACAAAATTT+TGG | 0.186168 | 2_2:-5479262 | None:intergenic |
| CTTCTCTCATTGCTTGATAT+TGG | 0.269406 | 2_2:+5477909 | Msa0233160:CDS |
| TAAGAGAGTTACTAAATTGA+TGG | 0.270336 | 2_2:+5478175 | Msa0233160:CDS |
| CTTTGGAAGGAAATGATTCT+TGG | 0.276322 | 2_2:-5477536 | None:intergenic |
| TTAACTTGATCAGTTGTGTT+GGG | 0.301874 | 2_2:+5477841 | Msa0233160:CDS |
| GATAAAGAGGTATGGAGAAT+TGG | 0.308656 | 2_2:+5479159 | Msa0233160:CDS |
| TGTGATTCCCTCGCAGCATC+TGG | 0.320998 | 2_2:-5478272 | None:intergenic |
| TGTTAAGATTGAGACGATTA+AGG | 0.322350 | 2_2:+5477875 | Msa0233160:CDS |
| AACTTCTTTGACTCAATGTT+TGG | 0.334568 | 2_2:+5479094 | Msa0233160:CDS |
| AATCTTAATCGAATTGCTAT+TGG | 0.350422 | 2_2:+5477957 | Msa0233160:CDS |
| AAGAATTTCTAAGTAACCTT+TGG | 0.354279 | 2_2:-5477553 | None:intergenic |
| AATATTAATTTATGAACAAT+TGG | 0.357226 | 2_2:+5476900 | Msa0233160:five_prime_UTR |
| TATGCATGATCTTTCCCATT+TGG | 0.362344 | 2_2:-5478074 | None:intergenic |
| AACAATATAGAAAGTCTTAT+AGG | 0.376145 | 2_2:+5478005 | Msa0233160:CDS |
| TGCTTGTGTCACAAGAAAAC+TGG | 0.377089 | 2_2:-5477665 | None:intergenic |
| CTGGCTTGTGTAAAGAAGTC+AGG | 0.412840 | 2_2:+5479205 | Msa0233160:CDS |
| GAAGGCTGGAGATGAGGATC+AGG | 0.415316 | 2_2:-5478221 | None:intergenic |
| CTACTTCTTCCATCTCCAAA+TGG | 0.419857 | 2_2:+5478059 | Msa0233160:CDS |
| CTTAACTTGATCAGTTGTGT+TGG | 0.425064 | 2_2:+5477840 | Msa0233160:CDS |
| TCCATATGAGGCTTCAAACT+TGG | 0.429267 | 2_2:-5477450 | None:intergenic |
| TTGGACTTGGTTTGAACTCA+TGG | 0.448896 | 2_2:+5477497 | Msa0233160:CDS |
| AGAAATTCTTGACAGAATCA+TGG | 0.453296 | 2_2:+5477566 | Msa0233160:CDS |
| AATGGAATGTGGGACCCATC+TGG | 0.457405 | 2_2:+5479186 | Msa0233160:CDS |
| GTTGAAGAGATAAAGAGGTA+TGG | 0.458167 | 2_2:+5479151 | Msa0233160:CDS |
| ATTTGTTAGACAATGTCATA+AGG | 0.461079 | 2_2:+5477760 | Msa0233160:CDS |
| ATTTAGTAACTCTCTTAACT+TGG | 0.462016 | 2_2:-5478169 | None:intergenic |
| ACCAAGTTTGAAGCCTCATA+TGG | 0.471749 | 2_2:+5477449 | Msa0233160:CDS |
| GTATGGAGAATTGGAAGGAA+TGG | 0.482357 | 2_2:+5479168 | Msa0233160:CDS |
| AGGATGTTGAAGAGATAAAG+AGG | 0.487290 | 2_2:+5479146 | Msa0233160:CDS |
| ATGCTTCAAATTCAGAAGGC+TGG | 0.488106 | 2_2:-5478235 | None:intergenic |
| TATTGGATCAATTTCTTGCA+AGG | 0.490862 | 2_2:+5477926 | Msa0233160:CDS |
| TACTTCTTCCATCTCCAAAT+GGG | 0.494724 | 2_2:+5478060 | Msa0233160:CDS |
| TGTCTAGTGACATGAGCTCT+TGG | 0.498662 | 2_2:-5479028 | None:intergenic |
| TCATGCAGGCATAGGTGAAA+AGG | 0.500065 | 2_2:+5478907 | Msa0233160:CDS |
| AAGACATCTTACAAGAAACT+TGG | 0.503196 | 2_2:+5478985 | Msa0233160:CDS |
| CAAGAACATAGATGTGAAAG+AGG | 0.507528 | 2_2:+5479126 | Msa0233160:CDS |
| CAAGAATCATTTCCTTCCAA+AGG | 0.510512 | 2_2:+5477537 | Msa0233160:CDS |
| CTGTTTGAAGAACATGTGTA+TGG | 0.510698 | 2_2:-5477633 | None:intergenic |
| TCATAGGTTCATGCAGGCAT+AGG | 0.518428 | 2_2:+5478899 | Msa0233160:intron |
| CTTCTTTACACAAGCCAGAT+GGG | 0.520558 | 2_2:-5479200 | None:intergenic |
| GTCACAAGAAAACTGGAAGC+TGG | 0.528319 | 2_2:-5477658 | None:intergenic |
| TAACTTGATCAGTTGTGTTG+GGG | 0.536130 | 2_2:+5477842 | Msa0233160:CDS |
| ATTTCTAAGTAACCTTTGGA+AGG | 0.544773 | 2_2:-5477549 | None:intergenic |
| ATAACTTCTCTGAGGCTACA+TGG | 0.547407 | 2_2:+5477706 | Msa0233160:CDS |
| TGATCTTTCCCATTTGGAGA+TGG | 0.548740 | 2_2:-5478068 | None:intergenic |
| GAATTGGAAGGAATGGAATG+TGG | 0.550446 | 2_2:+5479175 | Msa0233160:CDS |
| AGCCATGGACATGTATCTAA+AGG | 0.550561 | 2_2:+5478310 | Msa0233160:CDS |
| ACTTCTTTACACAAGCCAGA+TGG | 0.554159 | 2_2:-5479201 | None:intergenic |
| AAGTCTTATAGGTCCTCTGT+TGG | 0.561210 | 2_2:+5478016 | Msa0233160:CDS |
| ATCAATGCTTCAAATTCAGA+AGG | 0.564510 | 2_2:-5478239 | None:intergenic |
| TGGCTTGTGTAAAGAAGTCA+GGG | 0.569595 | 2_2:+5479206 | Msa0233160:CDS |
| GTGATTCCCTCGCAGCATCT+GGG | 0.573530 | 2_2:-5478271 | None:intergenic |
| AGAACATAGCATGGACACAT+TGG | 0.577656 | 2_2:-5477382 | None:intergenic |
| TTTCTTGTGACATCTTCTCG+TGG | 0.587506 | 2_2:-5478958 | None:intergenic |
| AGTTCTCCCAGATGCTGCGA+GGG | 0.592260 | 2_2:+5478265 | Msa0233160:CDS |
| TACCTTTAGATACATGTCCA+TGG | 0.593742 | 2_2:-5478312 | None:intergenic |
| AATTCAGAAGGCTGGAGATG+AGG | 0.594161 | 2_2:-5478227 | None:intergenic |
| ACAAGCTTTCATTGTAAACA+AGG | 0.597814 | 2_2:+5476960 | Msa0233160:five_prime_UTR |
| TGATCAATTATACATAGCCA+TGG | 0.599608 | 2_2:+5478295 | Msa0233160:CDS |
| TTGAGCAGCAGAACATAGCA+TGG | 0.601035 | 2_2:-5477391 | None:intergenic |
| TGGAGTTTGCTGTGAACTTG+AGG | 0.605340 | 2_2:+5476920 | Msa0233160:five_prime_UTR |
| AAGAGGTATGGAGAATTGGA+AGG | 0.605606 | 2_2:+5479163 | Msa0233160:CDS |
| TTGCTACAATAGCAGCAACA+TGG | 0.606776 | 2_2:+5477347 | Msa0233160:exon |
| AATTGGAAGGAATGGAATGT+GGG | 0.609226 | 2_2:+5479176 | Msa0233160:CDS |
| ATTGATGGATTTGTTCCTTG+TGG | 0.613773 | 2_2:+5478190 | Msa0233160:CDS |
| TATGGACTTGTAACAAGACA+TGG | 0.645211 | 2_2:-5477615 | None:intergenic |
| CAGTTCTCCCAGATGCTGCG+AGG | 0.652508 | 2_2:+5478264 | Msa0233160:CDS |
| GATCAGGAGCAACTTCCACA+AGG | 0.673647 | 2_2:-5478205 | None:intergenic |
| CTTGAGAAATAACTTCTCTG+AGG | 0.684042 | 2_2:+5477698 | Msa0233160:CDS |
| ATTGTTGCTTGATCCAACAG+AGG | 0.696020 | 2_2:-5478029 | None:intergenic |
| ACTTCTCTGAGGCTACATGG+TGG | 0.749190 | 2_2:+5477709 | Msa0233160:CDS |
| GGCTTGTGTAAAGAAGTCAG+GGG | 0.777448 | 2_2:+5479207 | Msa0233160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAATTTATGAACAAT+TGG | + | chr2_2:5476900-5476919 | Msa0233160:five_prime_UTR | 10.0% |
| !! | AAAAATAAAAAATATCATCA+TGG | - | chr2_2:5477267-5477286 | None:intergenic | 10.0% |
| !! | ATAATATTAAGAATCATAAA+GGG | - | chr2_2:5478413-5478432 | None:intergenic | 10.0% |
| !! | AATAATATTAAGAATCATAA+AGG | - | chr2_2:5478414-5478433 | None:intergenic | 10.0% |
| !! | TTGTTCATAAATTAATATTT+GGG | - | chr2_2:5476899-5476918 | None:intergenic | 10.0% |
| !! | ATTGTTCATAAATTAATATT+TGG | - | chr2_2:5476900-5476919 | None:intergenic | 10.0% |
| !! | AATATTAATTTATGAACAAT+TGG | + | chr2_2:5476900-5476919 | Msa0233160:five_prime_UTR | 10.0% |
| !! | AAAAATAAAAAATATCATCA+TGG | - | chr2_2:5477267-5477286 | None:intergenic | 10.0% |
| !! | ATAATATTAAGAATCATAAA+GGG | - | chr2_2:5478413-5478432 | None:intergenic | 10.0% |
| !! | AATAATATTAAGAATCATAA+AGG | - | chr2_2:5478414-5478433 | None:intergenic | 10.0% |
| !!! | TTTGAAACAATAAATTATGA+GGG | - | chr2_2:5477201-5477220 | None:intergenic | 15.0% |
| !!! | ATTTGAAACAATAAATTATG+AGG | - | chr2_2:5477202-5477221 | None:intergenic | 15.0% |
| !!! | AATAATCATGAACAAAATTT+TGG | - | chr2_2:5479265-5479284 | None:intergenic | 15.0% |
| !!! | TTTGAAACAATAAATTATGA+GGG | - | chr2_2:5477201-5477220 | None:intergenic | 15.0% |
| !!! | ATTTGAAACAATAAATTATG+AGG | - | chr2_2:5477202-5477221 | None:intergenic | 15.0% |
| !!! | AATAATCATGAACAAAATTT+TGG | - | chr2_2:5479265-5479284 | None:intergenic | 15.0% |
| !!! | TTCAAATTCTCAATCTTTTA+TGG | + | chr2_2:5477215-5477234 | Msa0233160:intron | 20.0% |
| !! | ATGTGATAAAATTCATCATA+TGG | - | chr2_2:5477304-5477323 | None:intergenic | 20.0% |
| !!! | ATATGGAAAATTTTCTTGAA+GGG | + | chr2_2:5477466-5477485 | Msa0233160:CDS | 20.0% |
| !!! | AACAATATAGAAAGTCTTAT+AGG | + | chr2_2:5478005-5478024 | Msa0233160:CDS | 20.0% |
| !!! | ATTGTACAAGATTTTAAGTT+AGG | + | chr2_2:5478379-5478398 | Msa0233160:intron | 20.0% |
| !!! | ATTAGTTTCATATTTGTTTC+TGG | + | chr2_2:5479282-5479301 | Msa0233160:three_prime_UTR | 20.0% |
| !!! | TTCAAATTCTCAATCTTTTA+TGG | + | chr2_2:5477215-5477234 | Msa0233160:intron | 20.0% |
| !! | ATGTGATAAAATTCATCATA+TGG | - | chr2_2:5477304-5477323 | None:intergenic | 20.0% |
| !!! | ATATGGAAAATTTTCTTGAA+GGG | + | chr2_2:5477466-5477485 | Msa0233160:CDS | 20.0% |
| !!! | AACAATATAGAAAGTCTTAT+AGG | + | chr2_2:5478005-5478024 | Msa0233160:CDS | 20.0% |
| !!! | ATTGTACAAGATTTTAAGTT+AGG | + | chr2_2:5478379-5478398 | Msa0233160:intron | 20.0% |
| !!! | ATTAGTTTCATATTTGTTTC+TGG | + | chr2_2:5479282-5479301 | Msa0233160:three_prime_UTR | 20.0% |
| !! | TCAAGAAAATTTTCCATATG+AGG | - | chr2_2:5477465-5477484 | None:intergenic | 25.0% |
| !! | CATATGGAAAATTTTCTTGA+AGG | + | chr2_2:5477465-5477484 | Msa0233160:CDS | 25.0% |
| ! | AAGAATTTCTAAGTAACCTT+TGG | - | chr2_2:5477556-5477575 | None:intergenic | 25.0% |
| !! | ATTTGTTAGACAATGTCATA+AGG | + | chr2_2:5477760-5477779 | Msa0233160:CDS | 25.0% |
| ! | AATCTTAATCGAATTGCTAT+TGG | + | chr2_2:5477957-5477976 | Msa0233160:CDS | 25.0% |
| !!! | ATGATGTTGATTTTGTCATA+AGG | + | chr2_2:5478096-5478115 | Msa0233160:CDS | 25.0% |
| ! | ATTTAGTAACTCTCTTAACT+TGG | - | chr2_2:5478172-5478191 | None:intergenic | 25.0% |
| ! | TAAGAGAGTTACTAAATTGA+TGG | + | chr2_2:5478175-5478194 | Msa0233160:CDS | 25.0% |
| ! | AATATCGTTATTTGTGATCT+AGG | - | chr2_2:5478494-5478513 | None:intergenic | 25.0% |
| ! | CAGCATAATTTATGATGAAA+TGG | - | chr2_2:5478526-5478545 | None:intergenic | 25.0% |
| ! | TGTGTTTAAAGACTATTGTT+CGG | - | chr2_2:5478673-5478692 | None:intergenic | 25.0% |
| !!! | TTGTGTGCTATTTAAGTTTT+TGG | + | chr2_2:5478792-5478811 | Msa0233160:intron | 25.0% |
| !! | TTCCACTGATAAATTTTCAT+AGG | + | chr2_2:5478883-5478902 | Msa0233160:intron | 25.0% |
| ! | AACCTATGAAAATTTATCAG+TGG | - | chr2_2:5478888-5478907 | None:intergenic | 25.0% |
| !! | TCAAGAAAATTTTCCATATG+AGG | - | chr2_2:5477465-5477484 | None:intergenic | 25.0% |
| !! | CATATGGAAAATTTTCTTGA+AGG | + | chr2_2:5477465-5477484 | Msa0233160:CDS | 25.0% |
| ! | AAGAATTTCTAAGTAACCTT+TGG | - | chr2_2:5477556-5477575 | None:intergenic | 25.0% |
| !! | ATTTGTTAGACAATGTCATA+AGG | + | chr2_2:5477760-5477779 | Msa0233160:CDS | 25.0% |
| ! | AATCTTAATCGAATTGCTAT+TGG | + | chr2_2:5477957-5477976 | Msa0233160:CDS | 25.0% |
| !!! | ATGATGTTGATTTTGTCATA+AGG | + | chr2_2:5478096-5478115 | Msa0233160:CDS | 25.0% |
| ! | ATTTAGTAACTCTCTTAACT+TGG | - | chr2_2:5478172-5478191 | None:intergenic | 25.0% |
| ! | TAAGAGAGTTACTAAATTGA+TGG | + | chr2_2:5478175-5478194 | Msa0233160:CDS | 25.0% |
| ! | AATATCGTTATTTGTGATCT+AGG | - | chr2_2:5478494-5478513 | None:intergenic | 25.0% |
| ! | CAGCATAATTTATGATGAAA+TGG | - | chr2_2:5478526-5478545 | None:intergenic | 25.0% |
| ! | TGTGTTTAAAGACTATTGTT+CGG | - | chr2_2:5478673-5478692 | None:intergenic | 25.0% |
| !!! | TTGTGTGCTATTTAAGTTTT+TGG | + | chr2_2:5478792-5478811 | Msa0233160:intron | 25.0% |
| !! | TTCCACTGATAAATTTTCAT+AGG | + | chr2_2:5478883-5478902 | Msa0233160:intron | 25.0% |
| ! | AACCTATGAAAATTTATCAG+TGG | - | chr2_2:5478888-5478907 | None:intergenic | 25.0% |
| ACAAGCTTTCATTGTAAACA+AGG | + | chr2_2:5476960-5476979 | Msa0233160:five_prime_UTR | 30.0% | |
| !! | GCTTGCAGTATTTTTAATCA+TGG | - | chr2_2:5477087-5477106 | None:intergenic | 30.0% |
| TACAAAACCCTTCATCATTA+TGG | + | chr2_2:5477127-5477146 | Msa0233160:intron | 30.0% | |
| AACATTAATAATGCACTTCG+TGG | - | chr2_2:5477156-5477175 | None:intergenic | 30.0% | |
| ! | ATGCCTTTGAGTTCATAATT+AGG | + | chr2_2:5477322-5477341 | Msa0233160:intron | 30.0% |
| AAGCCTAATTATGAACTCAA+AGG | - | chr2_2:5477328-5477347 | None:intergenic | 30.0% | |
| ATTTCTAAGTAACCTTTGGA+AGG | - | chr2_2:5477552-5477571 | None:intergenic | 30.0% | |
| AGAAATTCTTGACAGAATCA+TGG | + | chr2_2:5477566-5477585 | Msa0233160:CDS | 30.0% | |
| ! | TTAACTTGATCAGTTGTGTT+GGG | + | chr2_2:5477841-5477860 | Msa0233160:CDS | 30.0% |
| TGTTAAGATTGAGACGATTA+AGG | + | chr2_2:5477875-5477894 | Msa0233160:CDS | 30.0% | |
| TATTGGATCAATTTCTTGCA+AGG | + | chr2_2:5477926-5477945 | Msa0233160:CDS | 30.0% | |
| !!! | CTCGTGAAGATTTTTTTGTT+AGG | + | chr2_2:5478119-5478138 | Msa0233160:CDS | 30.0% |
| !!! | GTGAAGATTTTTTTGTTAGG+AGG | + | chr2_2:5478122-5478141 | Msa0233160:CDS | 30.0% |
| !!! | AAGATTTTTTTGTTAGGAGG+AGG | + | chr2_2:5478125-5478144 | Msa0233160:CDS | 30.0% |
| ATCAATGCTTCAAATTCAGA+AGG | - | chr2_2:5478242-5478261 | None:intergenic | 30.0% | |
| TGATCAATTATACATAGCCA+TGG | + | chr2_2:5478295-5478314 | Msa0233160:CDS | 30.0% | |
| TGTATCTAAAGGTAAGTTAC+TGG | + | chr2_2:5478321-5478340 | Msa0233160:intron | 30.0% | |
| ATTATCTTGAAACCATACCA+CGG | - | chr2_2:5478642-5478661 | None:intergenic | 30.0% | |
| ! | TATCTGTTTTCTTTCGAATG+AGG | + | chr2_2:5478815-5478834 | Msa0233160:intron | 30.0% |
| ! | AAATTTTCATAGGTTCATGC+AGG | + | chr2_2:5478893-5478912 | Msa0233160:intron | 30.0% |
| AAGACATCTTACAAGAAACT+TGG | + | chr2_2:5478985-5479004 | Msa0233160:CDS | 30.0% | |
| AACTTCTTTGACTCAATGTT+TGG | + | chr2_2:5479094-5479113 | Msa0233160:CDS | 30.0% | |
| ACAAGCTTTCATTGTAAACA+AGG | + | chr2_2:5476960-5476979 | Msa0233160:five_prime_UTR | 30.0% | |
| !! | GCTTGCAGTATTTTTAATCA+TGG | - | chr2_2:5477087-5477106 | None:intergenic | 30.0% |
| TACAAAACCCTTCATCATTA+TGG | + | chr2_2:5477127-5477146 | Msa0233160:intron | 30.0% | |
| AACATTAATAATGCACTTCG+TGG | - | chr2_2:5477156-5477175 | None:intergenic | 30.0% | |
| ! | ATGCCTTTGAGTTCATAATT+AGG | + | chr2_2:5477322-5477341 | Msa0233160:intron | 30.0% |
| AAGCCTAATTATGAACTCAA+AGG | - | chr2_2:5477328-5477347 | None:intergenic | 30.0% | |
| ATTTCTAAGTAACCTTTGGA+AGG | - | chr2_2:5477552-5477571 | None:intergenic | 30.0% | |
| AGAAATTCTTGACAGAATCA+TGG | + | chr2_2:5477566-5477585 | Msa0233160:CDS | 30.0% | |
| ! | TTAACTTGATCAGTTGTGTT+GGG | + | chr2_2:5477841-5477860 | Msa0233160:CDS | 30.0% |
| TGTTAAGATTGAGACGATTA+AGG | + | chr2_2:5477875-5477894 | Msa0233160:CDS | 30.0% | |
| TATTGGATCAATTTCTTGCA+AGG | + | chr2_2:5477926-5477945 | Msa0233160:CDS | 30.0% | |
| !!! | CTCGTGAAGATTTTTTTGTT+AGG | + | chr2_2:5478119-5478138 | Msa0233160:CDS | 30.0% |
| !!! | GTGAAGATTTTTTTGTTAGG+AGG | + | chr2_2:5478122-5478141 | Msa0233160:CDS | 30.0% |
| !!! | AAGATTTTTTTGTTAGGAGG+AGG | + | chr2_2:5478125-5478144 | Msa0233160:CDS | 30.0% |
| ATCAATGCTTCAAATTCAGA+AGG | - | chr2_2:5478242-5478261 | None:intergenic | 30.0% | |
| TGATCAATTATACATAGCCA+TGG | + | chr2_2:5478295-5478314 | Msa0233160:CDS | 30.0% | |
| TGTATCTAAAGGTAAGTTAC+TGG | + | chr2_2:5478321-5478340 | Msa0233160:intron | 30.0% | |
| ATTATCTTGAAACCATACCA+CGG | - | chr2_2:5478642-5478661 | None:intergenic | 30.0% | |
| ! | TATCTGTTTTCTTTCGAATG+AGG | + | chr2_2:5478815-5478834 | Msa0233160:intron | 30.0% |
| ! | AAATTTTCATAGGTTCATGC+AGG | + | chr2_2:5478893-5478912 | Msa0233160:intron | 30.0% |
| AAGACATCTTACAAGAAACT+TGG | + | chr2_2:5478985-5479004 | Msa0233160:CDS | 30.0% | |
| AACTTCTTTGACTCAATGTT+TGG | + | chr2_2:5479094-5479113 | Msa0233160:CDS | 30.0% | |
| ACTGATTACTTCCATCACAA+TGG | + | chr2_2:5477032-5477051 | Msa0233160:intron | 35.0% | |
| !! | TGATGAAGGGTTTTGTAAGA+AGG | - | chr2_2:5477124-5477143 | None:intergenic | 35.0% |
| GTGGAATCCATAATGATGAA+GGG | - | chr2_2:5477137-5477156 | None:intergenic | 35.0% | |
| ! | ATGTTCTGCTGCTCAATTTT+TGG | + | chr2_2:5477398-5477417 | Msa0233160:CDS | 35.0% |
| ! | TTCTTGAAGGGATTCGTTTT+TGG | + | chr2_2:5477478-5477497 | Msa0233160:CDS | 35.0% |
| ! | CTTTGGAAGGAAATGATTCT+TGG | - | chr2_2:5477539-5477558 | None:intergenic | 35.0% |
| CAAGAATCATTTCCTTCCAA+AGG | + | chr2_2:5477537-5477556 | Msa0233160:CDS | 35.0% | |
| TATGGACTTGTAACAAGACA+TGG | - | chr2_2:5477618-5477637 | None:intergenic | 35.0% | |
| CTGTTTGAAGAACATGTGTA+TGG | - | chr2_2:5477636-5477655 | None:intergenic | 35.0% | |
| CTTGAGAAATAACTTCTCTG+AGG | + | chr2_2:5477698-5477717 | Msa0233160:CDS | 35.0% | |
| ! | CTTAACTTGATCAGTTGTGT+TGG | + | chr2_2:5477840-5477859 | Msa0233160:CDS | 35.0% |
| TAACTTGATCAGTTGTGTTG+GGG | + | chr2_2:5477842-5477861 | Msa0233160:CDS | 35.0% | |
| CTTCTCTCATTGCTTGATAT+TGG | + | chr2_2:5477909-5477928 | Msa0233160:CDS | 35.0% | |
| TACTTCTTCCATCTCCAAAT+GGG | + | chr2_2:5478060-5478079 | Msa0233160:CDS | 35.0% | |
| TATGCATGATCTTTCCCATT+TGG | - | chr2_2:5478077-5478096 | None:intergenic | 35.0% | |
| !! | ATTGATGGATTTGTTCCTTG+TGG | + | chr2_2:5478190-5478209 | Msa0233160:CDS | 35.0% |
| TACCTTTAGATACATGTCCA+TGG | - | chr2_2:5478315-5478334 | None:intergenic | 35.0% | |
| TTATCTTGAAACCATACCAC+GGG | - | chr2_2:5478641-5478660 | None:intergenic | 35.0% | |
| CAAGAACATAGATGTGAAAG+AGG | + | chr2_2:5479126-5479145 | Msa0233160:CDS | 35.0% | |
| AGGATGTTGAAGAGATAAAG+AGG | + | chr2_2:5479146-5479165 | Msa0233160:CDS | 35.0% | |
| GTTGAAGAGATAAAGAGGTA+TGG | + | chr2_2:5479151-5479170 | Msa0233160:CDS | 35.0% | |
| ! | GATAAAGAGGTATGGAGAAT+TGG | + | chr2_2:5479159-5479178 | Msa0233160:CDS | 35.0% |
| AATTGGAAGGAATGGAATGT+GGG | + | chr2_2:5479176-5479195 | Msa0233160:CDS | 35.0% | |
| ACTGATTACTTCCATCACAA+TGG | + | chr2_2:5477032-5477051 | Msa0233160:intron | 35.0% | |
| !! | TGATGAAGGGTTTTGTAAGA+AGG | - | chr2_2:5477124-5477143 | None:intergenic | 35.0% |
| GTGGAATCCATAATGATGAA+GGG | - | chr2_2:5477137-5477156 | None:intergenic | 35.0% | |
| ! | ATGTTCTGCTGCTCAATTTT+TGG | + | chr2_2:5477398-5477417 | Msa0233160:CDS | 35.0% |
| ! | TTCTTGAAGGGATTCGTTTT+TGG | + | chr2_2:5477478-5477497 | Msa0233160:CDS | 35.0% |
| ! | CTTTGGAAGGAAATGATTCT+TGG | - | chr2_2:5477539-5477558 | None:intergenic | 35.0% |
| CAAGAATCATTTCCTTCCAA+AGG | + | chr2_2:5477537-5477556 | Msa0233160:CDS | 35.0% | |
| TATGGACTTGTAACAAGACA+TGG | - | chr2_2:5477618-5477637 | None:intergenic | 35.0% | |
| CTGTTTGAAGAACATGTGTA+TGG | - | chr2_2:5477636-5477655 | None:intergenic | 35.0% | |
| CTTGAGAAATAACTTCTCTG+AGG | + | chr2_2:5477698-5477717 | Msa0233160:CDS | 35.0% | |
| ! | CTTAACTTGATCAGTTGTGT+TGG | + | chr2_2:5477840-5477859 | Msa0233160:CDS | 35.0% |
| TAACTTGATCAGTTGTGTTG+GGG | + | chr2_2:5477842-5477861 | Msa0233160:CDS | 35.0% | |
| CTTCTCTCATTGCTTGATAT+TGG | + | chr2_2:5477909-5477928 | Msa0233160:CDS | 35.0% | |
| TACTTCTTCCATCTCCAAAT+GGG | + | chr2_2:5478060-5478079 | Msa0233160:CDS | 35.0% | |
| TATGCATGATCTTTCCCATT+TGG | - | chr2_2:5478077-5478096 | None:intergenic | 35.0% | |
| !! | ATTGATGGATTTGTTCCTTG+TGG | + | chr2_2:5478190-5478209 | Msa0233160:CDS | 35.0% |
| TACCTTTAGATACATGTCCA+TGG | - | chr2_2:5478315-5478334 | None:intergenic | 35.0% | |
| TTATCTTGAAACCATACCAC+GGG | - | chr2_2:5478641-5478660 | None:intergenic | 35.0% | |
| CAAGAACATAGATGTGAAAG+AGG | + | chr2_2:5479126-5479145 | Msa0233160:CDS | 35.0% | |
| AGGATGTTGAAGAGATAAAG+AGG | + | chr2_2:5479146-5479165 | Msa0233160:CDS | 35.0% | |
| GTTGAAGAGATAAAGAGGTA+TGG | + | chr2_2:5479151-5479170 | Msa0233160:CDS | 35.0% | |
| ! | GATAAAGAGGTATGGAGAAT+TGG | + | chr2_2:5479159-5479178 | Msa0233160:CDS | 35.0% |
| AATTGGAAGGAATGGAATGT+GGG | + | chr2_2:5479176-5479195 | Msa0233160:CDS | 35.0% | |
| GTGACAACTTACCATTGTGA+TGG | - | chr2_2:5477046-5477065 | None:intergenic | 40.0% | |
| CGTGGAATCCATAATGATGA+AGG | - | chr2_2:5477138-5477157 | None:intergenic | 40.0% | |
| TTGCTACAATAGCAGCAACA+TGG | + | chr2_2:5477347-5477366 | Msa0233160:exon | 40.0% | |
| AGAACATAGCATGGACACAT+TGG | - | chr2_2:5477385-5477404 | None:intergenic | 40.0% | |
| !! | TGCTGCTCAATTTTTGGAGA+TGG | + | chr2_2:5477404-5477423 | Msa0233160:CDS | 40.0% |
| ! | ACCAAGTTTGAAGCCTCATA+TGG | + | chr2_2:5477449-5477468 | Msa0233160:CDS | 40.0% |
| TCCATATGAGGCTTCAAACT+TGG | - | chr2_2:5477453-5477472 | None:intergenic | 40.0% | |
| !! | AAGGGATTCGTTTTTGGACT+TGG | + | chr2_2:5477484-5477503 | Msa0233160:CDS | 40.0% |
| ! | TTGGACTTGGTTTGAACTCA+TGG | + | chr2_2:5477497-5477516 | Msa0233160:CDS | 40.0% |
| TGCTTGTGTCACAAGAAAAC+TGG | - | chr2_2:5477668-5477687 | None:intergenic | 40.0% | |
| !! | ATAACTTCTCTGAGGCTACA+TGG | + | chr2_2:5477706-5477725 | Msa0233160:CDS | 40.0% |
| ! | AAGTCTTATAGGTCCTCTGT+TGG | + | chr2_2:5478016-5478035 | Msa0233160:CDS | 40.0% |
| ! | ATTGTTGCTTGATCCAACAG+AGG | - | chr2_2:5478032-5478051 | None:intergenic | 40.0% |
| CTACTTCTTCCATCTCCAAA+TGG | + | chr2_2:5478059-5478078 | Msa0233160:CDS | 40.0% | |
| TGATCTTTCCCATTTGGAGA+TGG | - | chr2_2:5478071-5478090 | None:intergenic | 40.0% | |
| ATGCTTCAAATTCAGAAGGC+TGG | - | chr2_2:5478238-5478257 | None:intergenic | 40.0% | |
| AGCCATGGACATGTATCTAA+AGG | + | chr2_2:5478310-5478329 | Msa0233160:CDS | 40.0% | |
| ! | GTGATCTAGGCCATAGTTTT+AGG | - | chr2_2:5478481-5478500 | None:intergenic | 40.0% |
| TCTACTTCTAGCCTGATAAG+CGG | + | chr2_2:5478591-5478610 | Msa0233160:intron | 40.0% | |
| TATCTTGAAACCATACCACG+GGG | - | chr2_2:5478640-5478659 | None:intergenic | 40.0% | |
| CTACGTCTCTGACTACATAT+TGG | - | chr2_2:5478743-5478762 | None:intergenic | 40.0% | |
| CAATATGTAGTCAGAGACGT+AGG | + | chr2_2:5478741-5478760 | Msa0233160:intron | 40.0% | |
| TTTCTTGTGACATCTTCTCG+TGG | - | chr2_2:5478961-5478980 | None:intergenic | 40.0% | |
| !!! | GCTCTTGGTTTTGTTTCTGA+AGG | - | chr2_2:5479016-5479035 | None:intergenic | 40.0% |
| ! | AAGAGGTATGGAGAATTGGA+AGG | + | chr2_2:5479163-5479182 | Msa0233160:CDS | 40.0% |
| GTATGGAGAATTGGAAGGAA+TGG | + | chr2_2:5479168-5479187 | Msa0233160:CDS | 40.0% | |
| GAATTGGAAGGAATGGAATG+TGG | + | chr2_2:5479175-5479194 | Msa0233160:CDS | 40.0% | |
| CTTCTTTACACAAGCCAGAT+GGG | - | chr2_2:5479203-5479222 | None:intergenic | 40.0% | |
| ACTTCTTTACACAAGCCAGA+TGG | - | chr2_2:5479204-5479223 | None:intergenic | 40.0% | |
| ! | TGGCTTGTGTAAAGAAGTCA+GGG | + | chr2_2:5479206-5479225 | Msa0233160:CDS | 40.0% |
| GTGACAACTTACCATTGTGA+TGG | - | chr2_2:5477046-5477065 | None:intergenic | 40.0% | |
| CGTGGAATCCATAATGATGA+AGG | - | chr2_2:5477138-5477157 | None:intergenic | 40.0% | |
| TTGCTACAATAGCAGCAACA+TGG | + | chr2_2:5477347-5477366 | Msa0233160:exon | 40.0% | |
| AGAACATAGCATGGACACAT+TGG | - | chr2_2:5477385-5477404 | None:intergenic | 40.0% | |
| !! | TGCTGCTCAATTTTTGGAGA+TGG | + | chr2_2:5477404-5477423 | Msa0233160:CDS | 40.0% |
| ! | ACCAAGTTTGAAGCCTCATA+TGG | + | chr2_2:5477449-5477468 | Msa0233160:CDS | 40.0% |
| TCCATATGAGGCTTCAAACT+TGG | - | chr2_2:5477453-5477472 | None:intergenic | 40.0% | |
| !! | AAGGGATTCGTTTTTGGACT+TGG | + | chr2_2:5477484-5477503 | Msa0233160:CDS | 40.0% |
| ! | TTGGACTTGGTTTGAACTCA+TGG | + | chr2_2:5477497-5477516 | Msa0233160:CDS | 40.0% |
| TGCTTGTGTCACAAGAAAAC+TGG | - | chr2_2:5477668-5477687 | None:intergenic | 40.0% | |
| !! | ATAACTTCTCTGAGGCTACA+TGG | + | chr2_2:5477706-5477725 | Msa0233160:CDS | 40.0% |
| ! | AAGTCTTATAGGTCCTCTGT+TGG | + | chr2_2:5478016-5478035 | Msa0233160:CDS | 40.0% |
| ! | ATTGTTGCTTGATCCAACAG+AGG | - | chr2_2:5478032-5478051 | None:intergenic | 40.0% |
| CTACTTCTTCCATCTCCAAA+TGG | + | chr2_2:5478059-5478078 | Msa0233160:CDS | 40.0% | |
| TGATCTTTCCCATTTGGAGA+TGG | - | chr2_2:5478071-5478090 | None:intergenic | 40.0% | |
| ATGCTTCAAATTCAGAAGGC+TGG | - | chr2_2:5478238-5478257 | None:intergenic | 40.0% | |
| AGCCATGGACATGTATCTAA+AGG | + | chr2_2:5478310-5478329 | Msa0233160:CDS | 40.0% | |
| ! | GTGATCTAGGCCATAGTTTT+AGG | - | chr2_2:5478481-5478500 | None:intergenic | 40.0% |
| TCTACTTCTAGCCTGATAAG+CGG | + | chr2_2:5478591-5478610 | Msa0233160:intron | 40.0% | |
| TATCTTGAAACCATACCACG+GGG | - | chr2_2:5478640-5478659 | None:intergenic | 40.0% | |
| CTACGTCTCTGACTACATAT+TGG | - | chr2_2:5478743-5478762 | None:intergenic | 40.0% | |
| CAATATGTAGTCAGAGACGT+AGG | + | chr2_2:5478741-5478760 | Msa0233160:intron | 40.0% | |
| TTTCTTGTGACATCTTCTCG+TGG | - | chr2_2:5478961-5478980 | None:intergenic | 40.0% | |
| !!! | GCTCTTGGTTTTGTTTCTGA+AGG | - | chr2_2:5479016-5479035 | None:intergenic | 40.0% |
| ! | AAGAGGTATGGAGAATTGGA+AGG | + | chr2_2:5479163-5479182 | Msa0233160:CDS | 40.0% |
| GTATGGAGAATTGGAAGGAA+TGG | + | chr2_2:5479168-5479187 | Msa0233160:CDS | 40.0% | |
| GAATTGGAAGGAATGGAATG+TGG | + | chr2_2:5479175-5479194 | Msa0233160:CDS | 40.0% | |
| CTTCTTTACACAAGCCAGAT+GGG | - | chr2_2:5479203-5479222 | None:intergenic | 40.0% | |
| ACTTCTTTACACAAGCCAGA+TGG | - | chr2_2:5479204-5479223 | None:intergenic | 40.0% | |
| ! | TGGCTTGTGTAAAGAAGTCA+GGG | + | chr2_2:5479206-5479225 | Msa0233160:CDS | 40.0% |
| !! | TGGAGTTTGCTGTGAACTTG+AGG | + | chr2_2:5476920-5476939 | Msa0233160:five_prime_UTR | 45.0% |
| TACTGCAAGCATGTCACAAG+TGG | + | chr2_2:5477097-5477116 | Msa0233160:intron | 45.0% | |
| TTGAGCAGCAGAACATAGCA+TGG | - | chr2_2:5477394-5477413 | None:intergenic | 45.0% | |
| GTCACAAGAAAACTGGAAGC+TGG | - | chr2_2:5477661-5477680 | None:intergenic | 45.0% | |
| AATTCAGAAGGCTGGAGATG+AGG | - | chr2_2:5478230-5478249 | None:intergenic | 45.0% | |
| CGCAGACACACCTAAAACTA+TGG | + | chr2_2:5478468-5478487 | Msa0233160:intron | 45.0% | |
| CTACTTCTAGCCTGATAAGC+GGG | + | chr2_2:5478592-5478611 | Msa0233160:intron | 45.0% | |
| ATCTTGAAACCATACCACGG+GGG | - | chr2_2:5478639-5478658 | None:intergenic | 45.0% | |
| TCATAGGTTCATGCAGGCAT+AGG | + | chr2_2:5478899-5478918 | Msa0233160:intron | 45.0% | |
| TCATGCAGGCATAGGTGAAA+AGG | + | chr2_2:5478907-5478926 | Msa0233160:CDS | 45.0% | |
| TGTCTAGTGACATGAGCTCT+TGG | - | chr2_2:5479031-5479050 | None:intergenic | 45.0% | |
| ! | CTGGCTTGTGTAAAGAAGTC+AGG | + | chr2_2:5479205-5479224 | Msa0233160:CDS | 45.0% |
| GGCTTGTGTAAAGAAGTCAG+GGG | + | chr2_2:5479207-5479226 | Msa0233160:CDS | 45.0% | |
| !! | TGGAGTTTGCTGTGAACTTG+AGG | + | chr2_2:5476920-5476939 | Msa0233160:five_prime_UTR | 45.0% |
| TACTGCAAGCATGTCACAAG+TGG | + | chr2_2:5477097-5477116 | Msa0233160:intron | 45.0% | |
| TTGAGCAGCAGAACATAGCA+TGG | - | chr2_2:5477394-5477413 | None:intergenic | 45.0% | |
| GTCACAAGAAAACTGGAAGC+TGG | - | chr2_2:5477661-5477680 | None:intergenic | 45.0% | |
| AATTCAGAAGGCTGGAGATG+AGG | - | chr2_2:5478230-5478249 | None:intergenic | 45.0% | |
| CGCAGACACACCTAAAACTA+TGG | + | chr2_2:5478468-5478487 | Msa0233160:intron | 45.0% | |
| CTACTTCTAGCCTGATAAGC+GGG | + | chr2_2:5478592-5478611 | Msa0233160:intron | 45.0% | |
| ATCTTGAAACCATACCACGG+GGG | - | chr2_2:5478639-5478658 | None:intergenic | 45.0% | |
| TCATAGGTTCATGCAGGCAT+AGG | + | chr2_2:5478899-5478918 | Msa0233160:intron | 45.0% | |
| TCATGCAGGCATAGGTGAAA+AGG | + | chr2_2:5478907-5478926 | Msa0233160:CDS | 45.0% | |
| TGTCTAGTGACATGAGCTCT+TGG | - | chr2_2:5479031-5479050 | None:intergenic | 45.0% | |
| ! | CTGGCTTGTGTAAAGAAGTC+AGG | + | chr2_2:5479205-5479224 | Msa0233160:CDS | 45.0% |
| GGCTTGTGTAAAGAAGTCAG+GGG | + | chr2_2:5479207-5479226 | Msa0233160:CDS | 45.0% | |
| !!! | ATGATATTTTTTATTTTTTT+TGG | + | chr2_2:5477269-5477288 | Msa0233160:intron | 5.0% |
| !!! | ATGATATTTTTTATTTTTTT+TGG | + | chr2_2:5477269-5477288 | Msa0233160:intron | 5.0% |
| !! | ACTTCTCTGAGGCTACATGG+TGG | + | chr2_2:5477709-5477728 | Msa0233160:CDS | 50.0% |
| GATCAGGAGCAACTTCCACA+AGG | - | chr2_2:5478208-5478227 | None:intergenic | 50.0% | |
| ATTGGAAATCCCCCGTGGTA+TGG | + | chr2_2:5478627-5478646 | Msa0233160:intron | 50.0% | |
| AGTCAGAGACGTAGGCACAT+TGG | + | chr2_2:5478749-5478768 | Msa0233160:intron | 50.0% | |
| AATGGAATGTGGGACCCATC+TGG | + | chr2_2:5479186-5479205 | Msa0233160:CDS | 50.0% | |
| !! | ACTTCTCTGAGGCTACATGG+TGG | + | chr2_2:5477709-5477728 | Msa0233160:CDS | 50.0% |
| GATCAGGAGCAACTTCCACA+AGG | - | chr2_2:5478208-5478227 | None:intergenic | 50.0% | |
| ATTGGAAATCCCCCGTGGTA+TGG | + | chr2_2:5478627-5478646 | Msa0233160:intron | 50.0% | |
| AGTCAGAGACGTAGGCACAT+TGG | + | chr2_2:5478749-5478768 | Msa0233160:intron | 50.0% | |
| AATGGAATGTGGGACCCATC+TGG | + | chr2_2:5479186-5479205 | Msa0233160:CDS | 50.0% | |
| GAAGGCTGGAGATGAGGATC+AGG | - | chr2_2:5478224-5478243 | None:intergenic | 55.0% | |
| AGTTCTCCCAGATGCTGCGA+GGG | + | chr2_2:5478265-5478284 | Msa0233160:CDS | 55.0% | |
| GTGATTCCCTCGCAGCATCT+GGG | - | chr2_2:5478274-5478293 | None:intergenic | 55.0% | |
| TGTGATTCCCTCGCAGCATC+TGG | - | chr2_2:5478275-5478294 | None:intergenic | 55.0% | |
| GAAGGCTGGAGATGAGGATC+AGG | - | chr2_2:5478224-5478243 | None:intergenic | 55.0% | |
| AGTTCTCCCAGATGCTGCGA+GGG | + | chr2_2:5478265-5478284 | Msa0233160:CDS | 55.0% | |
| GTGATTCCCTCGCAGCATCT+GGG | - | chr2_2:5478274-5478293 | None:intergenic | 55.0% | |
| TGTGATTCCCTCGCAGCATC+TGG | - | chr2_2:5478275-5478294 | None:intergenic | 55.0% | |
| CAGTTCTCCCAGATGCTGCG+AGG | + | chr2_2:5478264-5478283 | Msa0233160:CDS | 60.0% | |
| GCGTGACAAGCCCGCTTATC+AGG | - | chr2_2:5478605-5478624 | None:intergenic | 60.0% | |
| ! | AGCGGGCTTGTCACGCGAAT+TGG | + | chr2_2:5478609-5478628 | Msa0233160:intron | 60.0% |
| CGCGAATTGGAAATCCCCCG+TGG | + | chr2_2:5478622-5478641 | Msa0233160:intron | 60.0% | |
| CAGTTCTCCCAGATGCTGCG+AGG | + | chr2_2:5478264-5478283 | Msa0233160:CDS | 60.0% | |
| GCGTGACAAGCCCGCTTATC+AGG | - | chr2_2:5478605-5478624 | None:intergenic | 60.0% | |
| ! | AGCGGGCTTGTCACGCGAAT+TGG | + | chr2_2:5478609-5478628 | Msa0233160:intron | 60.0% |
| CGCGAATTGGAAATCCCCCG+TGG | + | chr2_2:5478622-5478641 | Msa0233160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 5476898 | 5479329 | 5476898 | ID=Msa0233160;Name=Msa0233160 |
| chr2_2 | mRNA | 5476898 | 5479329 | 5476898 | ID=Msa0233160-mRNA-1;Parent=Msa0233160;Name=Msa0233160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106|1|1|1|0|0.33|3|50|446 |
| chr2_2 | exon | 5476898 | 5476981 | 5476898 | ID=Msa0233160-mRNA-1:exon:2333;Parent=Msa0233160-mRNA-1 |
| chr2_2 | exon | 5477344 | 5478331 | 5477344 | ID=Msa0233160-mRNA-1:exon:2334;Parent=Msa0233160-mRNA-1 |
| chr2_2 | exon | 5478905 | 5479329 | 5478905 | ID=Msa0233160-mRNA-1:exon:2335;Parent=Msa0233160-mRNA-1 |
| chr2_2 | five_prime_UTR | 5476898 | 5476981 | 5476898 | ID=Msa0233160-mRNA-1:five_prime_utr;Parent=Msa0233160-mRNA-1 |
| chr2_2 | five_prime_UTR | 5477344 | 5477365 | 5477344 | ID=Msa0233160-mRNA-1:five_prime_utr;Parent=Msa0233160-mRNA-1 |
| chr2_2 | CDS | 5477366 | 5478331 | 5477366 | ID=Msa0233160-mRNA-1:cds;Parent=Msa0233160-mRNA-1 |
| chr2_2 | CDS | 5478905 | 5479279 | 5478905 | ID=Msa0233160-mRNA-1:cds;Parent=Msa0233160-mRNA-1 |
| chr2_2 | three_prime_UTR | 5479280 | 5479329 | 5479280 | ID=Msa0233160-mRNA-1:three_prime_utr;Parent=Msa0233160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
