Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237390 | AES64296.1 | 99.158 | 475 | 4 | 0 | 1 | 475 | 1 | 475 | 0.0 | 978 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237390 | sp|O24467|LE14B_PRUAR | 69.365 | 457 | 135 | 3 | 3 | 457 | 9 | 462 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237390 | G7IFM1 | 99.158 | 475 | 4 | 0 | 1 | 475 | 1 | 475 | 0.0 | 978 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0237390 | Msa1259010 | 0.800923 | 1.147771e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237390 | MtrunA17_Chr2g0286731 | 98.938 | 471 | 5 | 0 | 1 | 471 | 1 | 471 | 0.0 | 969 |
| Msa0237390 | MtrunA17_Chr1g0196321 | 68.000 | 450 | 140 | 2 | 18 | 463 | 35 | 484 | 0.0 | 645 |
| Msa0237390 | MtrunA17_Chr7g0253861 | 24.818 | 274 | 134 | 5 | 210 | 444 | 100 | 340 | 2.63e-18 | 86.3 |
| Msa0237390 | MtrunA17_Chr4g0067151 | 26.613 | 248 | 160 | 6 | 208 | 443 | 78 | 315 | 3.27e-16 | 79.7 |
| Msa0237390 | MtrunA17_Chr3g0093681 | 32.540 | 126 | 81 | 1 | 211 | 336 | 443 | 564 | 2.86e-14 | 75.1 |
| Msa0237390 | MtrunA17_Chr1g0172501 | 32.540 | 126 | 81 | 1 | 211 | 336 | 443 | 564 | 8.85e-14 | 73.6 |
| Msa0237390 | MtrunA17_Chr1g0185501 | 25.301 | 249 | 158 | 7 | 210 | 443 | 71 | 306 | 1.09e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237390 | AT4G03020.1 | 71.525 | 446 | 120 | 3 | 32 | 474 | 52 | 493 | 0.0 | 668 |
| Msa0237390 | AT4G03020.2 | 71.525 | 446 | 120 | 3 | 32 | 474 | 52 | 493 | 0.0 | 668 |
| Msa0237390 | AT4G03020.3 | 71.525 | 446 | 120 | 3 | 32 | 474 | 52 | 493 | 0.0 | 668 |
| Msa0237390 | AT2G43770.1 | 25.912 | 274 | 131 | 6 | 210 | 444 | 98 | 338 | 9.04e-20 | 90.9 |
Find 128 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATTTCTTGCATATTT+AGG | 0.104439 | 2_2:-10528705 | None:intergenic |
| GATAATGATAATGATGAATT+TGG | 0.159616 | 2_2:+10527543 | Msa0237390:CDS |
| AATTGTCCACCGTAAGTTTC+TGG | 0.182078 | 2_2:-10526428 | None:intergenic |
| CTAAATATGCAAGAAATTTA+AGG | 0.217256 | 2_2:+10528706 | Msa0237390:CDS |
| GTGTGTGATGAATGAATTTA+AGG | 0.241607 | 2_2:-10525067 | None:intergenic |
| ACTCCAGTGGATCTTCTATT+TGG | 0.244163 | 2_2:-10530178 | None:intergenic |
| GGCCGTTATTTAATTTCTAA+TGG | 0.258615 | 2_2:+10528482 | Msa0237390:CDS |
| CTCTCCGGATACATATATTT+AGG | 0.300424 | 2_2:+10530248 | Msa0237390:three_prime_UTR |
| CCGATCCTGCATTGACAATA+TGG | 0.301448 | 2_2:-10526693 | None:intergenic |
| AAATAAGTGTAACAAACTTT+TGG | 0.307033 | 2_2:-10530338 | None:intergenic |
| TGCCAGCTGCAATCTCTTAA+AGG | 0.307367 | 2_2:-10530064 | None:intergenic |
| CTTGGGATGGTGACATTGTT+AGG | 0.316849 | 2_2:+10530116 | Msa0237390:CDS |
| TGTCCCATAGCTTGGTAGTT+TGG | 0.319852 | 2_2:-10528511 | None:intergenic |
| TCCACTGGAGTTCGTATTAG+AGG | 0.324570 | 2_2:+10530190 | Msa0237390:CDS |
| GCATTGACAATATGGATAAT+TGG | 0.329443 | 2_2:-10526685 | None:intergenic |
| TTAATCTACGAATTTATGAT+AGG | 0.363637 | 2_2:-10530388 | None:intergenic |
| AACACAACACTCACAGTTGA+TGG | 0.372300 | 2_2:+10525097 | Msa0237390:five_prime_UTR |
| ATTGTTAGGTGGGAATTTCC+TGG | 0.376216 | 2_2:+10530130 | Msa0237390:CDS |
| TCTGGTCATCTCATATATTC+TGG | 0.377793 | 2_2:+10528113 | Msa0237390:CDS |
| AGTCGTGTTGTTCCTGGTAC+GGG | 0.382420 | 2_2:+10525799 | Msa0237390:CDS |
| ATCTTGATGGGGCATTTAGA+AGG | 0.389360 | 2_2:+10528431 | Msa0237390:CDS |
| AGGTGGGAATTTCCTGGAAA+TGG | 0.393643 | 2_2:+10530136 | Msa0237390:CDS |
| GTTATTTCTCACCATCATAT+AGG | 0.399373 | 2_2:+10528793 | Msa0237390:CDS |
| GCAGGAGGTTGACCATTTCC+AGG | 0.414172 | 2_2:-10530148 | None:intergenic |
| CTACCAAGCTATGGGACATA+AGG | 0.419416 | 2_2:+10528516 | Msa0237390:CDS |
| GTCTGCTTTGCTGATGAATC+TGG | 0.420608 | 2_2:+10528095 | Msa0237390:CDS |
| TCAATATGTGTATATGATCT+TGG | 0.429420 | 2_2:+10527627 | Msa0237390:CDS |
| ATAATGATAATGATGAATTT+GGG | 0.436292 | 2_2:+10527544 | Msa0237390:CDS |
| ACAACCAGCTGGCATCTTGA+TGG | 0.437455 | 2_2:+10528418 | Msa0237390:CDS |
| TAAACCTACAGTCTGGGCCT+TGG | 0.442950 | 2_2:+10528648 | Msa0237390:intron |
| TTCTCTTACACCAATAGAAA+AGG | 0.444191 | 2_2:+10530313 | Msa0237390:three_prime_UTR |
| AATTTGAGTCGTGTTGTTCC+TGG | 0.446775 | 2_2:+10525793 | Msa0237390:CDS |
| CTTACAAGATATTGTCGATC+AGG | 0.447419 | 2_2:-10526469 | None:intergenic |
| ATCGACAATCCAAGGACCTT+TGG | 0.448041 | 2_2:-10525935 | None:intergenic |
| GATATCAGCATTGGATAGAA+AGG | 0.448504 | 2_2:-10530088 | None:intergenic |
| TTCCATTAGAAATTAAATAA+CGG | 0.450455 | 2_2:-10528484 | None:intergenic |
| CCTCAGAATTCCTGCTCACC+TGG | 0.452156 | 2_2:+10527665 | Msa0237390:CDS |
| GATGGGCGAGAGCTTGTGTC+TGG | 0.453921 | 2_2:+10527591 | Msa0237390:CDS |
| TTTGTACATATTTATCTCTC+CGG | 0.454546 | 2_2:+10530233 | Msa0237390:three_prime_UTR |
| ATTGAAACAGTGTTTGATGA+TGG | 0.457017 | 2_2:-10525037 | None:intergenic |
| GAGTCGTGTTGTTCCTGGTA+CGG | 0.457305 | 2_2:+10525798 | Msa0237390:CDS |
| ATTTGCCTACCAAAGGTCCT+TGG | 0.457941 | 2_2:+10525926 | Msa0237390:CDS |
| TTCATTAATAGTCGCGGGGA+TGG | 0.461834 | 2_2:+10528461 | Msa0237390:CDS |
| AGGCGTTGCTTTGCTGCAAA+AGG | 0.464029 | 2_2:+10528395 | Msa0237390:CDS |
| CAACCAGCTGGCATCTTGAT+GGG | 0.472797 | 2_2:+10528419 | Msa0237390:CDS |
| CCAGTGGATCTTCTATTTGG+AGG | 0.475216 | 2_2:-10530175 | None:intergenic |
| ATGTTGCCAATGACTGGTCC+TGG | 0.479160 | 2_2:-10528734 | None:intergenic |
| TCTACCTAAATATATGTATC+CGG | 0.479470 | 2_2:-10530252 | None:intergenic |
| CTTCCTTATGTCCCATAGCT+TGG | 0.483959 | 2_2:-10528519 | None:intergenic |
| GCATCCCCAGGACCAGTCAT+TGG | 0.489591 | 2_2:+10528728 | Msa0237390:CDS |
| TCGCTTCATTCTCCAATCAC+AGG | 0.490272 | 2_2:+10525153 | Msa0237390:five_prime_UTR |
| CAGTGGATCTTCTATTTGGA+GGG | 0.491056 | 2_2:-10530174 | None:intergenic |
| TATATGATGTTGACAAGGAC+TGG | 0.492556 | 2_2:+10526383 | Msa0237390:CDS |
| CAATGCTGATATCTTCAGCT+TGG | 0.492574 | 2_2:+10530098 | Msa0237390:CDS |
| CACCTTTAAGAGATTGCAGC+TGG | 0.492653 | 2_2:+10530062 | Msa0237390:CDS |
| CAGTCATTGGCAACATATCA+AGG | 0.494910 | 2_2:+10528741 | Msa0237390:CDS |
| CTTGATATGTTGCCAATGAC+TGG | 0.495230 | 2_2:-10528740 | None:intergenic |
| TTACATTCATTAATAGTCGC+GGG | 0.500203 | 2_2:+10528456 | Msa0237390:CDS |
| ATATGTAATACCAGGTGAGC+AGG | 0.501569 | 2_2:-10527675 | None:intergenic |
| AATTACCTGCATCAACTGTA+AGG | 0.508475 | 2_2:+10525824 | Msa0237390:CDS |
| GCAGGTAATTTCCCCGTACC+AGG | 0.509277 | 2_2:-10525811 | None:intergenic |
| TGAGGAATGAAACCTGTGAT+TGG | 0.511697 | 2_2:-10525165 | None:intergenic |
| TCCTTGGATTGTCGATCGCA+TGG | 0.513756 | 2_2:+10525942 | Msa0237390:CDS |
| ATTATCCATATTGTCAATGC+AGG | 0.514577 | 2_2:+10526688 | Msa0237390:CDS |
| CCGTGTTGCGTACTCTAGTT+CGG | 0.518140 | 2_2:+10528769 | Msa0237390:CDS |
| GTGGATCTTCTATTTGGAGG+GGG | 0.521632 | 2_2:-10530172 | None:intergenic |
| AGTAATGAATCTAGTGGAAG+TGG | 0.525470 | 2_2:+10525694 | Msa0237390:CDS |
| AATACAAGTTACCTATATGA+TGG | 0.526315 | 2_2:-10528804 | None:intergenic |
| CAAGCTGAAGATATCAGCAT+TGG | 0.526318 | 2_2:-10530097 | None:intergenic |
| ACATCTCTGCCAGAAACTTA+CGG | 0.527267 | 2_2:+10526419 | Msa0237390:CDS |
| AGGATGTTGGTAGGCAGAGA+AGG | 0.527556 | 2_2:+10525844 | Msa0237390:CDS |
| TCACATTCTTTGTAGGTGAG+TGG | 0.527712 | 2_2:+10530007 | Msa0237390:intron |
| AGTGGATCTTCTATTTGGAG+GGG | 0.530056 | 2_2:-10530173 | None:intergenic |
| AATGCTGATATCTTCAGCTT+GGG | 0.530130 | 2_2:+10530099 | Msa0237390:CDS |
| GGAAGTGGAATGGATGGAGA+AGG | 0.532430 | 2_2:+10525709 | Msa0237390:CDS |
| AAGACCAAACTACCAAGCTA+TGG | 0.533647 | 2_2:+10528507 | Msa0237390:CDS |
| TGCCCCATCAAGATGCCAGC+TGG | 0.534261 | 2_2:-10528422 | None:intergenic |
| GACCTGTACAGGTGTGGGAT+AGG | 0.535063 | 2_2:+10528375 | Msa0237390:intron |
| AGTCCCACTCGTCGTCTCCA+AGG | 0.538717 | 2_2:-10528665 | None:intergenic |
| TCTAGTGGAAGTGGAATGGA+TGG | 0.542029 | 2_2:+10525703 | Msa0237390:CDS |
| CTCTGTCTATATATATGACC+TGG | 0.550941 | 2_2:+10529746 | Msa0237390:CDS |
| TGAATCTAGTGGAAGTGGAA+TGG | 0.552690 | 2_2:+10525699 | Msa0237390:CDS |
| GGATGGTGACATTGTTAGGT+GGG | 0.553199 | 2_2:+10530120 | Msa0237390:CDS |
| GCTGCAAAAGGACAACCAGC+TGG | 0.555581 | 2_2:+10528407 | Msa0237390:CDS |
| CCTCCAAATAGAAGATCCAC+TGG | 0.558762 | 2_2:+10530175 | Msa0237390:CDS |
| TTGCACAGATCACAAAGCTC+AGG | 0.559290 | 2_2:+10525755 | Msa0237390:CDS |
| AACATCCTTACAGTTGATGC+AGG | 0.566179 | 2_2:-10525829 | None:intergenic |
| TGTTGCCAATGACTGGTCCT+GGG | 0.567625 | 2_2:-10528733 | None:intergenic |
| CAACATCATATATTCTGATG+TGG | 0.571580 | 2_2:-10526372 | None:intergenic |
| ATTACATTCATTAATAGTCG+CGG | 0.577184 | 2_2:+10528455 | Msa0237390:CDS |
| TGCATCAACTGTAAGGATGT+TGG | 0.585388 | 2_2:+10525831 | Msa0237390:CDS |
| GGGATGGTGACATTGTTAGG+TGG | 0.586134 | 2_2:+10530119 | Msa0237390:CDS |
| TGGGCCTTGGAGACGACGAG+TGG | 0.586629 | 2_2:+10528661 | Msa0237390:CDS |
| CCCATGCGATCGACAATCCA+AGG | 0.588179 | 2_2:-10525943 | None:intergenic |
| AGACCAAACTACCAAGCTAT+GGG | 0.590086 | 2_2:+10528508 | Msa0237390:CDS |
| AAGAAATTTAAGGCATCCCC+AGG | 0.593421 | 2_2:+10528716 | Msa0237390:CDS |
| CCTTGGATTGTCGATCGCAT+GGG | 0.593733 | 2_2:+10525943 | Msa0237390:CDS |
| CCATATTGTCAATGCAGGAT+CGG | 0.598464 | 2_2:+10526693 | Msa0237390:CDS |
| ATTTACACTGGATCTAGTGA+TGG | 0.599754 | 2_2:+10529723 | Msa0237390:CDS |
| AGCCGCTATTTGCCTACCAA+AGG | 0.600990 | 2_2:+10525919 | Msa0237390:CDS |
| CGAGTGGGACTACCGGTGGA+TGG | 0.601037 | 2_2:+10528677 | Msa0237390:CDS |
| AACCAGCTGGCATCTTGATG+GGG | 0.601649 | 2_2:+10528420 | Msa0237390:CDS |
| GAGACGACGAGTGGGACTAC+CGG | 0.610203 | 2_2:+10528670 | Msa0237390:CDS |
| GGGCCTTGGAGACGACGAGT+GGG | 0.610369 | 2_2:+10528662 | Msa0237390:CDS |
| GTCGTGTTGTTCCTGGTACG+GGG | 0.611745 | 2_2:+10525800 | Msa0237390:CDS |
| GGCAGCAGTAATGAATCTAG+TGG | 0.613796 | 2_2:+10525688 | Msa0237390:CDS |
| TACATTCATTAATAGTCGCG+GGG | 0.623189 | 2_2:+10528457 | Msa0237390:CDS |
| ATTTAGGATAGTCCATCCAC+CGG | 0.623304 | 2_2:-10528689 | None:intergenic |
| ACACGACTCAAATTCTCATG+TGG | 0.624498 | 2_2:-10525784 | None:intergenic |
| CTGATATCTTCAGCTTGGGA+TGG | 0.627405 | 2_2:+10530103 | Msa0237390:CDS |
| CCGAACTAGAGTACGCAACA+CGG | 0.627548 | 2_2:-10528769 | None:intergenic |
| CCAGGTGAGCAGGAATTCTG+AGG | 0.628041 | 2_2:-10527665 | None:intergenic |
| GACCTTTGGTAGGCAAATAG+CGG | 0.632536 | 2_2:-10525921 | None:intergenic |
| ACAATCCAAGGACCTTTGGT+AGG | 0.633625 | 2_2:-10525931 | None:intergenic |
| GACTGTATGAATGATGGTAG+TGG | 0.634830 | 2_2:+10525667 | Msa0237390:CDS |
| ACAAGTGACTGTATGAATGA+TGG | 0.636150 | 2_2:+10525661 | Msa0237390:CDS |
| ACCTCTAATACGAACTCCAG+TGG | 0.636276 | 2_2:-10530191 | None:intergenic |
| TCAACTGTAAGGATGTTGGT+AGG | 0.641616 | 2_2:+10525835 | Msa0237390:CDS |
| CTAGAGTACGCAACACGGAG+TGG | 0.643743 | 2_2:-10528764 | None:intergenic |
| CAGAATATATGATGTTGACA+AGG | 0.644861 | 2_2:+10526378 | Msa0237390:CDS |
| AAGTGATGATAGTTTCTGCA+AGG | 0.652431 | 2_2:+10528136 | Msa0237390:CDS |
| AGATTCATCAGCAAAGCAGA+CGG | 0.654512 | 2_2:-10528093 | None:intergenic |
| ACGACGAGTGGGACTACCGG+TGG | 0.666395 | 2_2:+10528673 | Msa0237390:CDS |
| GTTGCCAATGACTGGTCCTG+GGG | 0.667116 | 2_2:-10528732 | None:intergenic |
| TGATGAATGAATTTAAGGAA+AGG | 0.692997 | 2_2:-10525062 | None:intergenic |
| TCATTGCAGGAAGTTCACGA+TGG | 0.705664 | 2_2:+10527504 | Msa0237390:intron |
| GATTGGAGAATGAAGCGATG+AGG | 0.760652 | 2_2:-10525148 | None:intergenic |
| TCTCTGCCAGAAACTTACGG+TGG | 0.772244 | 2_2:+10526422 | Msa0237390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTATTTTTTTACATTT+AGG | + | chr2_2:10525464-10525483 | Msa0237390:intron | 10.0% |
| !!! | ATGCATATATAATTTTTAAA+AGG | - | chr2_2:10527164-10527183 | None:intergenic | 10.0% |
| !!! | ACATATTATTTTCTTATAAT+TGG | + | chr2_2:10527692-10527711 | Msa0237390:intron | 10.0% |
| !!! | TTTTGATTGATATAAGAAAA+GGG | - | chr2_2:10525339-10525358 | None:intergenic | 15.0% |
| !!! | ATTTTGATTGATATAAGAAA+AGG | - | chr2_2:10525340-10525359 | None:intergenic | 15.0% |
| !! | TTAGTTATACAAATGAAATT+AGG | - | chr2_2:10525419-10525438 | None:intergenic | 15.0% |
| !!! | TATTTCTGAAACTATAATTA+TGG | + | chr2_2:10526256-10526275 | Msa0237390:intron | 15.0% |
| !!! | ATTTCTGAAACTATAATTAT+GGG | + | chr2_2:10526257-10526276 | Msa0237390:intron | 15.0% |
| !!! | TTGGATTAAATTGATAATAA+CGG | - | chr2_2:10527245-10527264 | None:intergenic | 15.0% |
| !!! | ATAATGATAATGATGAATTT+GGG | + | chr2_2:10527544-10527563 | Msa0237390:CDS | 15.0% |
| !!! | TGATATTATTTTCCTATAAT+TGG | + | chr2_2:10527757-10527776 | Msa0237390:intron | 15.0% |
| !! | TATTTCTTTATATGTTAGTA+TGG | + | chr2_2:10528015-10528034 | Msa0237390:intron | 15.0% |
| !! | TTCCATTAGAAATTAAATAA+CGG | - | chr2_2:10528487-10528506 | None:intergenic | 15.0% |
| !! | TACAGATTTATTCTAATAAA+TGG | + | chr2_2:10528599-10528618 | Msa0237390:intron | 15.0% |
| !!! | TTTTCTTGGAATAATAAAAT+AGG | + | chr2_2:10529350-10529369 | Msa0237390:intron | 15.0% |
| !!! | TTATTGATGTTATATCATTT+TGG | + | chr2_2:10529463-10529482 | Msa0237390:intron | 15.0% |
| !!! | TTATTTTTCAATCGAATTTT+GGG | - | chr2_2:10529499-10529518 | None:intergenic | 15.0% |
| !!! | ATTATTTTTCAATCGAATTT+TGG | - | chr2_2:10529500-10529519 | None:intergenic | 15.0% |
| !!! | CATTAAGAACTTTTTTTTTT+TGG | - | chr2_2:10529907-10529926 | None:intergenic | 15.0% |
| !!! | ACTAAATCCATTTTTAAAAT+TGG | + | chr2_2:10529959-10529978 | Msa0237390:intron | 15.0% |
| !!! | TGTTAAACCAATTTTAAAAA+TGG | - | chr2_2:10529969-10529988 | None:intergenic | 15.0% |
| !! | ATTAAAGAGAAAATGAATGT+GGG | - | chr2_2:10525249-10525268 | None:intergenic | 20.0% |
| !! | AATTAAAGAGAAAATGAATG+TGG | - | chr2_2:10525250-10525269 | None:intergenic | 20.0% |
| !! | ATATCAATCAAAATTCAACT+TGG | + | chr2_2:10525346-10525365 | Msa0237390:intron | 20.0% |
| !! | TATCAATCAAAATTCAACTT+GGG | + | chr2_2:10525347-10525366 | Msa0237390:intron | 20.0% |
| !!! | CTTATTTTTTTACATTTAGG+TGG | + | chr2_2:10525467-10525486 | Msa0237390:intron | 20.0% |
| !!! | GATAGAATTTTATCATAGTT+TGG | + | chr2_2:10525536-10525555 | Msa0237390:intron | 20.0% |
| !! | TTTAAGAATTCCTTTATCTA+AGG | + | chr2_2:10525576-10525595 | Msa0237390:intron | 20.0% |
| !! | TTAAGAATTCCTTTATCTAA+GGG | + | chr2_2:10525577-10525596 | Msa0237390:intron | 20.0% |
| !!! | TCCATTTTTCAAAATACTAT+CGG | - | chr2_2:10526124-10526143 | None:intergenic | 20.0% |
| !! | GTCATATGAATGATTTATAA+TGG | + | chr2_2:10526878-10526897 | Msa0237390:intron | 20.0% |
| !! | TTTAAAAGGAAAATGACAAA+GGG | - | chr2_2:10527150-10527169 | None:intergenic | 20.0% |
| !!! | TTTTAAAAGGAAAATGACAA+AGG | - | chr2_2:10527151-10527170 | None:intergenic | 20.0% |
| !! | GTTATTATCAATTTAATCCA+AGG | + | chr2_2:10527244-10527263 | Msa0237390:intron | 20.0% |
| !!! | GATAATGATAATGATGAATT+TGG | + | chr2_2:10527543-10527562 | Msa0237390:CDS | 20.0% |
| !!! | TTTCTCTATCAAATTTTCAA+CGG | + | chr2_2:10527569-10527588 | Msa0237390:CDS | 20.0% |
| !! | AGAAAATAATATGTAATACC+AGG | - | chr2_2:10527686-10527705 | None:intergenic | 20.0% |
| !!! | AAAGAAATTAAGTAGCTTTA+AGG | - | chr2_2:10527989-10528008 | None:intergenic | 20.0% |
| !!! | TTACTTTCATTTCATTGATT+TGG | + | chr2_2:10528314-10528333 | Msa0237390:intron | 20.0% |
| !! | CAAAAAAAAATCTTACTTCA+TGG | - | chr2_2:10528558-10528577 | None:intergenic | 20.0% |
| !! | CTTAAATTTCTTGCATATTT+AGG | - | chr2_2:10528708-10528727 | None:intergenic | 20.0% |
| !! | CTAAATATGCAAGAAATTTA+AGG | + | chr2_2:10528706-10528725 | Msa0237390:CDS | 20.0% |
| !!! | ATATAGGTAACTTGTATTTT+TGG | + | chr2_2:10528809-10528828 | Msa0237390:intron | 20.0% |
| !! | TCTGAATTTCCAAAATATTT+AGG | + | chr2_2:10528879-10528898 | Msa0237390:intron | 20.0% |
| !!! | AGTTCAAAACCTAAATATTT+TGG | - | chr2_2:10528891-10528910 | None:intergenic | 20.0% |
| !! | TTTGTTTATAATATCACTCA+AGG | + | chr2_2:10529094-10529113 | Msa0237390:intron | 20.0% |
| !! | AAATCAAAAGAGAAAAGAAA+AGG | - | chr2_2:10529213-10529232 | None:intergenic | 20.0% |
| !!! | AACGATAACAATTTTTTTCT+TGG | + | chr2_2:10529336-10529355 | Msa0237390:intron | 20.0% |
| !! | TCAACTAAAACATTAATTCA+CGG | - | chr2_2:10529566-10529585 | None:intergenic | 20.0% |
| !!! | AAATAAGTGTAACAAACTTT+TGG | - | chr2_2:10530341-10530360 | None:intergenic | 20.0% |
| !! | TTAATCTACGAATTTATGAT+AGG | - | chr2_2:10530391-10530410 | None:intergenic | 20.0% |
| ! | TGATGAATGAATTTAAGGAA+AGG | - | chr2_2:10525065-10525084 | None:intergenic | 25.0% |
| !! | CTTGGGAAAAAAAAAGTTTT+TGG | + | chr2_2:10525364-10525383 | Msa0237390:intron | 25.0% |
| ! | TAACTAATATTCATAGTGTG+AGG | + | chr2_2:10525432-10525451 | Msa0237390:intron | 25.0% |
| !! | TAGGTGGTAATTTTACATTT+AGG | + | chr2_2:10525483-10525502 | Msa0237390:intron | 25.0% |
| ! | TTTACATTTAGGTGGTAATT+TGG | + | chr2_2:10525475-10525494 | Msa0237390:intron | 25.0% |
| ! | TTACATTTAGGTGGTAATTT+GGG | + | chr2_2:10525476-10525495 | Msa0237390:intron | 25.0% |
| !! | TTGATATGATGCATTTTTGT+AGG | + | chr2_2:10525605-10525624 | Msa0237390:intron | 25.0% |
| ! | ATAAGTAACTACAATCAGAA+TGG | - | chr2_2:10526043-10526062 | None:intergenic | 25.0% |
| !!! | ACCGATAGTATTTTGAAAAA+TGG | + | chr2_2:10526120-10526139 | Msa0237390:intron | 25.0% |
| ! | TTTGTGCTTTGTATGAAAAA+GGG | + | chr2_2:10526346-10526365 | Msa0237390:intron | 25.0% |
| ! | GTCAAAATGCAAAGTTAAAA+GGG | - | chr2_2:10526624-10526643 | None:intergenic | 25.0% |
| ! | TGTCAAAATGCAAAGTTAAA+AGG | - | chr2_2:10526625-10526644 | None:intergenic | 25.0% |
| ! | AATTGTTAATTCATCATTGC+AGG | + | chr2_2:10526645-10526664 | Msa0237390:intron | 25.0% |
| ! | TAACAATATGAGAATTAGCT+GGG | - | chr2_2:10526810-10526829 | None:intergenic | 25.0% |
| ! | TTAACAATATGAGAATTAGC+TGG | - | chr2_2:10526811-10526830 | None:intergenic | 25.0% |
| ! | TGACAACTTATGAGTTTAAT+AGG | - | chr2_2:10527054-10527073 | None:intergenic | 25.0% |
| ! | TTAACTTTGACACCAAATAT+TGG | + | chr2_2:10527219-10527238 | Msa0237390:intron | 25.0% |
| ! | GTGAGAACTTAAGAAAATTA+TGG | - | chr2_2:10527275-10527294 | None:intergenic | 25.0% |
| ! | GTATTTATACATATGCGTAT+AGG | + | chr2_2:10527412-10527431 | Msa0237390:intron | 25.0% |
| ! | TCAATATGTGTATATGATCT+TGG | + | chr2_2:10527627-10527646 | Msa0237390:CDS | 25.0% |
| ! | AAATCATTTCTAACAGTACA+TGG | - | chr2_2:10527935-10527954 | None:intergenic | 25.0% |
| ! | CTAATTTAAATCACCAACAA+TGG | - | chr2_2:10528253-10528272 | None:intergenic | 25.0% |
| ! | ATTACATTCATTAATAGTCG+CGG | + | chr2_2:10528455-10528474 | Msa0237390:CDS | 25.0% |
| ! | TATTATTTAAACCTACAGTC+TGG | + | chr2_2:10528641-10528660 | Msa0237390:intron | 25.0% |
| ! | ATTATTTAAACCTACAGTCT+GGG | + | chr2_2:10528642-10528661 | Msa0237390:intron | 25.0% |
| ! | AATACAAGTTACCTATATGA+TGG | - | chr2_2:10528807-10528826 | None:intergenic | 25.0% |
| ! | ATATTTCATGTCAAGAAATC+TGG | - | chr2_2:10528926-10528945 | None:intergenic | 25.0% |
| ! | ACATCAAAAATTTGAACCTA+CGG | - | chr2_2:10529046-10529065 | None:intergenic | 25.0% |
| !! | TTTTTGTGGTCATTTAAATC+TGG | - | chr2_2:10529305-10529324 | None:intergenic | 25.0% |
| ! | AAAAATTGTTATCGTTTCAG+AGG | - | chr2_2:10529332-10529351 | None:intergenic | 25.0% |
| ! | GATATAACATCAATAAAGCA+TGG | - | chr2_2:10529459-10529478 | None:intergenic | 25.0% |
| ! | AGGATTTATCAATTTCAACA+TGG | - | chr2_2:10529539-10529558 | None:intergenic | 25.0% |
| ! | CAACTAAAACATTAATTCAC+GGG | - | chr2_2:10529565-10529584 | None:intergenic | 25.0% |
| !! | ATTTAGTTTATGTACACTGT+TGG | - | chr2_2:10529946-10529965 | None:intergenic | 25.0% |
| ! | TTTAGATTCACATTCTTTGT+AGG | + | chr2_2:10530000-10530019 | Msa0237390:intron | 25.0% |
| ! | TTTGTACATATTTATCTCTC+CGG | + | chr2_2:10530233-10530252 | Msa0237390:three_prime_UTR | 25.0% |
| ! | TCTACCTAAATATATGTATC+CGG | - | chr2_2:10530255-10530274 | None:intergenic | 25.0% |
| ! | TTACAAAGCTTACAAAAACA+AGG | - | chr2_2:10530367-10530386 | None:intergenic | 25.0% |
| ATTGAAACAGTGTTTGATGA+TGG | - | chr2_2:10525040-10525059 | None:intergenic | 30.0% | |
| GTGTGTGATGAATGAATTTA+AGG | - | chr2_2:10525070-10525089 | None:intergenic | 30.0% | |
| ATTCACCATCACTAAAACAA+GGG | - | chr2_2:10525204-10525223 | None:intergenic | 30.0% | |
| AATTCACCATCACTAAAACA+AGG | - | chr2_2:10525205-10525224 | None:intergenic | 30.0% | |
| GATTGATATAAGAAAAGGGT+CGG | - | chr2_2:10525335-10525354 | None:intergenic | 30.0% | |
| ! | GTGGTAATTTTACATTTAGG+TGG | + | chr2_2:10525486-10525505 | Msa0237390:intron | 30.0% |
| TCAAAGAAACCCTTAGATAA+AGG | - | chr2_2:10525589-10525608 | None:intergenic | 30.0% | |
| !! | AAGGTAATTTTTCTGGAAGA+GGG | + | chr2_2:10525863-10525882 | Msa0237390:CDS | 30.0% |
| ! | TCTTTTTATTGCTGGATTTC+AGG | + | chr2_2:10526005-10526024 | Msa0237390:CDS | 30.0% |
| TTGAAAGTAACTACATGTGT+TGG | + | chr2_2:10526149-10526168 | Msa0237390:intron | 30.0% | |
| AACTATAATTATGGGACCAA+AGG | + | chr2_2:10526265-10526284 | Msa0237390:intron | 30.0% | |
| ACTATAATTATGGGACCAAA+GGG | + | chr2_2:10526266-10526285 | Msa0237390:intron | 30.0% | |
| GTTTGTGCTTTGTATGAAAA+AGG | + | chr2_2:10526345-10526364 | Msa0237390:intron | 30.0% | |
| CAACATCATATATTCTGATG+TGG | - | chr2_2:10526375-10526394 | None:intergenic | 30.0% | |
| CAGAATATATGATGTTGACA+AGG | + | chr2_2:10526378-10526397 | Msa0237390:CDS | 30.0% | |
| !! | TTCAACTTGTTTTCCATATG+AGG | + | chr2_2:10526492-10526511 | Msa0237390:intron | 30.0% |
| ! | GCATTGACAATATGGATAAT+TGG | - | chr2_2:10526688-10526707 | None:intergenic | 30.0% |
| ATTATCCATATTGTCAATGC+AGG | + | chr2_2:10526688-10526707 | Msa0237390:CDS | 30.0% | |
| !! | CCTTAAATTTTATAGCCTTG+CGG | - | chr2_2:10526947-10526966 | None:intergenic | 30.0% |
| TGATAATAACGGCCAATATT+TGG | - | chr2_2:10527234-10527253 | None:intergenic | 30.0% | |
| ATAGAACGTGTAATTGCTAA+GGG | - | chr2_2:10527316-10527335 | None:intergenic | 30.0% | |
| ATAAATCCTTCTTTCATTGC+AGG | + | chr2_2:10527491-10527510 | Msa0237390:intron | 30.0% | |
| ! | TCTATCAAATTTTCAACGGA+TGG | + | chr2_2:10527573-10527592 | Msa0237390:CDS | 30.0% |
| ! | CTATCAAATTTTCAACGGAT+GGG | + | chr2_2:10527574-10527593 | Msa0237390:CDS | 30.0% |
| ACAAATCAGCAACCAATTAT+AGG | - | chr2_2:10527772-10527791 | None:intergenic | 30.0% | |
| ACCTCAAACTTCTTACTAAT+GGG | - | chr2_2:10527852-10527871 | None:intergenic | 30.0% | |
| AACCTCAAACTTCTTACTAA+TGG | - | chr2_2:10527853-10527872 | None:intergenic | 30.0% | |
| ATCAGACTGCAACATAAAAA+AGG | - | chr2_2:10528066-10528085 | None:intergenic | 30.0% | |
| CGAAGTCTCAAATAGTTATA+AGG | - | chr2_2:10528171-10528190 | None:intergenic | 30.0% | |
| TTACATTCATTAATAGTCGC+GGG | + | chr2_2:10528456-10528475 | Msa0237390:CDS | 30.0% | |
| ! | GGCCGTTATTTAATTTCTAA+TGG | + | chr2_2:10528482-10528501 | Msa0237390:CDS | 30.0% |
| ! | TTTTTGTCCTTCACTTTGTT+TGG | + | chr2_2:10528572-10528591 | Msa0237390:intron | 30.0% |
| !! | GTTATTTCTCACCATCATAT+AGG | + | chr2_2:10528793-10528812 | Msa0237390:CDS | 30.0% |
| !!! | TTTAGGTTTTGAACTGCTAA+TGG | + | chr2_2:10528896-10528915 | Msa0237390:intron | 30.0% |
| ! | ATATGTTTTGCTTAGTAGCT+AGG | + | chr2_2:10528998-10529017 | Msa0237390:intron | 30.0% |
| TAAGACGATAAATGAGTACA+AGG | - | chr2_2:10529162-10529181 | None:intergenic | 30.0% | |
| GTCTTATCTTGCAATACTAT+TGG | + | chr2_2:10529176-10529195 | Msa0237390:intron | 30.0% | |
| AAACATTAATTCACGGGAAA+AGG | - | chr2_2:10529559-10529578 | None:intergenic | 30.0% | |
| GAATTAATATTGCAGACTTG+AGG | - | chr2_2:10529601-10529620 | None:intergenic | 30.0% | |
| GGTCAAAAATACATTTACAC+TGG | + | chr2_2:10529711-10529730 | Msa0237390:CDS | 30.0% | |
| !! | TATAAGCAAGTGTTTTTACC+AGG | - | chr2_2:10529767-10529786 | None:intergenic | 30.0% |
| ! | ACATGATTAGTTGTGATTTG+TGG | - | chr2_2:10529831-10529850 | None:intergenic | 30.0% |
| TTCTCTTACACCAATAGAAA+AGG | + | chr2_2:10530313-10530332 | Msa0237390:three_prime_UTR | 30.0% | |
| !!! | ACTTTTGGAACCTTTTCTAT+TGG | - | chr2_2:10530326-10530345 | None:intergenic | 30.0% |
| TTCACCATCACTAAAACAAG+GGG | - | chr2_2:10525203-10525222 | None:intergenic | 35.0% | |
| AAGAGAAAATGAATGTGGGT+TGG | - | chr2_2:10525245-10525264 | None:intergenic | 35.0% | |
| ATTCATAGTGTGAGGCTAAA+AGG | + | chr2_2:10525440-10525459 | Msa0237390:intron | 35.0% | |
| ACAAGTGACTGTATGAATGA+TGG | + | chr2_2:10525661-10525680 | Msa0237390:CDS | 35.0% | |
| AGTAATGAATCTAGTGGAAG+TGG | + | chr2_2:10525694-10525713 | Msa0237390:CDS | 35.0% | |
| AATTACCTGCATCAACTGTA+AGG | + | chr2_2:10525824-10525843 | Msa0237390:CDS | 35.0% | |
| !! | GAAGGTAATTTTTCTGGAAG+AGG | + | chr2_2:10525862-10525881 | Msa0237390:CDS | 35.0% |
| ! | GATGGTTCTCTTTTTATTGC+TGG | + | chr2_2:10525997-10526016 | Msa0237390:CDS | 35.0% |
| AGTAACTACAATCAGAATGG+TGG | - | chr2_2:10526040-10526059 | None:intergenic | 35.0% | |
| TGAAGTGAAGCTGAAATATG+AGG | + | chr2_2:10526076-10526095 | Msa0237390:intron | 35.0% | |
| GTAACGATTTAAAGACCCTT+TGG | - | chr2_2:10526284-10526303 | None:intergenic | 35.0% | |
| GGTCTTTAAATCGTTACTTG+TGG | + | chr2_2:10526287-10526306 | Msa0237390:intron | 35.0% | |
| TGACAAAAAATCCTTACTCG+CGG | + | chr2_2:10526320-10526339 | Msa0237390:intron | 35.0% | |
| TATATGATGTTGACAAGGAC+TGG | + | chr2_2:10526383-10526402 | Msa0237390:CDS | 35.0% | |
| CTTACAAGATATTGTCGATC+AGG | - | chr2_2:10526472-10526491 | None:intergenic | 35.0% | |
| !! | AACTTGTTTTCCATATGAGG+TGG | + | chr2_2:10526495-10526514 | Msa0237390:intron | 35.0% |
| CAAAGTTAAAAGGGACAAAC+TGG | - | chr2_2:10526615-10526634 | None:intergenic | 35.0% | |
| !! | GCAATTTGCTAATTGAACGA+AGG | - | chr2_2:10526769-10526788 | None:intergenic | 35.0% |
| CCGCAAGGCTATAAAATTTA+AGG | + | chr2_2:10526944-10526963 | Msa0237390:intron | 35.0% | |
| CTCTCTGTATTCTTGCTAAA+TGG | + | chr2_2:10527076-10527095 | Msa0237390:intron | 35.0% | |
| GAAAATGACAAAGGGTGAAA+AGG | - | chr2_2:10527142-10527161 | None:intergenic | 35.0% | |
| AAATGAGATCAATTGACACC+AGG | + | chr2_2:10527187-10527206 | Msa0237390:intron | 35.0% | |
| CAAAGTTAAACTTTGACACC+TGG | - | chr2_2:10527208-10527227 | None:intergenic | 35.0% | |
| AGAAAATTATGGAGATGCCT+TGG | - | chr2_2:10527264-10527283 | None:intergenic | 35.0% | |
| GATAGAACGTGTAATTGCTA+AGG | - | chr2_2:10527317-10527336 | None:intergenic | 35.0% | |
| TTGAAGTGTGTATATGCACA+TGG | - | chr2_2:10527451-10527470 | None:intergenic | 35.0% | |
| GATTTGTCCTAAATCGCTTT+CGG | + | chr2_2:10527785-10527804 | Msa0237390:intron | 35.0% | |
| CAATAATCCGAAAGCGATTT+AGG | - | chr2_2:10527795-10527814 | None:intergenic | 35.0% | |
| ! | GCTCAAAATATCGAGTCTTT+TGG | + | chr2_2:10527825-10527844 | Msa0237390:intron | 35.0% |
| TCCCATTAGTAAGAAGTTTG+AGG | + | chr2_2:10527848-10527867 | Msa0237390:intron | 35.0% | |
| ! | GTAAGAAGTTTGAGGTTTCA+AGG | + | chr2_2:10527856-10527875 | Msa0237390:intron | 35.0% |
| TTGAGGTTTCAAGGAAGTAA+TGG | + | chr2_2:10527865-10527884 | Msa0237390:intron | 35.0% | |
| TCTGGTCATCTCATATATTC+TGG | + | chr2_2:10528113-10528132 | Msa0237390:CDS | 35.0% | |
| AAGTGATGATAGTTTCTGCA+AGG | + | chr2_2:10528136-10528155 | Msa0237390:CDS | 35.0% | |
| GCATGTCATTATTCCATTGT+TGG | + | chr2_2:10528237-10528256 | Msa0237390:intron | 35.0% | |
| TACATTCATTAATAGTCGCG+GGG | + | chr2_2:10528457-10528476 | Msa0237390:CDS | 35.0% | |
| GTATCTACCAAACAAAGTGA+AGG | - | chr2_2:10528582-10528601 | None:intergenic | 35.0% | |
| !!! | ATTCCATAGCTTTTAGCTCA+CGG | + | chr2_2:10528967-10528986 | Msa0237390:intron | 35.0% |
| GTGGTTAAATTGTTATCCGT+AGG | + | chr2_2:10529027-10529046 | Msa0237390:intron | 35.0% | |
| ! | GTTTCAGAGGAAACTTTTTG+TGG | - | chr2_2:10529319-10529338 | None:intergenic | 35.0% |
| !!! | TGAAAGTACCCTTTTGACTT+AGG | + | chr2_2:10529430-10529449 | Msa0237390:intron | 35.0% |
| CATGGTAACCTAAGTCAAAA+GGG | - | chr2_2:10529441-10529460 | None:intergenic | 35.0% | |
| TGCAAAGAGTTAAGAGAACA+TGG | - | chr2_2:10529637-10529656 | None:intergenic | 35.0% | |
| ATTTACACTGGATCTAGTGA+TGG | + | chr2_2:10529723-10529742 | Msa0237390:CDS | 35.0% | |
| CTCTGTCTATATATATGACC+TGG | + | chr2_2:10529746-10529765 | Msa0237390:CDS | 35.0% | |
| !! | TGTCAAAAGTTCTGAACGAT+CGG | + | chr2_2:10529877-10529896 | Msa0237390:intron | 35.0% |
| ! | GATATCAGCATTGGATAGAA+AGG | - | chr2_2:10530091-10530110 | None:intergenic | 35.0% |
| AATGCTGATATCTTCAGCTT+GGG | + | chr2_2:10530099-10530118 | Msa0237390:CDS | 35.0% | |
| CTCTCCGGATACATATATTT+AGG | + | chr2_2:10530248-10530267 | Msa0237390:three_prime_UTR | 35.0% | |
| AACACAACACTCACAGTTGA+TGG | + | chr2_2:10525097-10525116 | Msa0237390:five_prime_UTR | 40.0% | |
| TGAGGAATGAAACCTGTGAT+TGG | - | chr2_2:10525168-10525187 | None:intergenic | 40.0% | |
| TCACCATCACTAAAACAAGG+GGG | - | chr2_2:10525202-10525221 | None:intergenic | 40.0% | |
| GACTGTATGAATGATGGTAG+TGG | + | chr2_2:10525667-10525686 | Msa0237390:CDS | 40.0% | |
| TGAATCTAGTGGAAGTGGAA+TGG | + | chr2_2:10525699-10525718 | Msa0237390:CDS | 40.0% | |
| ACACGACTCAAATTCTCATG+TGG | - | chr2_2:10525787-10525806 | None:intergenic | 40.0% | |
| ! | AATTTGAGTCGTGTTGTTCC+TGG | + | chr2_2:10525793-10525812 | Msa0237390:CDS | 40.0% |
| ! | AACATCCTTACAGTTGATGC+AGG | - | chr2_2:10525832-10525851 | None:intergenic | 40.0% |
| TGCATCAACTGTAAGGATGT+TGG | + | chr2_2:10525831-10525850 | Msa0237390:CDS | 40.0% | |
| TCAACTGTAAGGATGTTGGT+AGG | + | chr2_2:10525835-10525854 | Msa0237390:CDS | 40.0% | |
| ! | GGCAGAGAAGGTAATTTTTC+TGG | + | chr2_2:10525856-10525875 | Msa0237390:CDS | 40.0% |
| ! | GTTTCGCAGTTTTCAGATGA+TGG | + | chr2_2:10525979-10525998 | Msa0237390:CDS | 40.0% |
| !! | TACATGTGTTGGTGTTGTGT+TGG | + | chr2_2:10526160-10526179 | Msa0237390:intron | 40.0% |
| ACATCTCTGCCAGAAACTTA+CGG | + | chr2_2:10526419-10526438 | Msa0237390:CDS | 40.0% | |
| AATTGTCCACCGTAAGTTTC+TGG | - | chr2_2:10526431-10526450 | None:intergenic | 40.0% | |
| CAGAATTGGCTGTTTATAGC+AGG | - | chr2_2:10526551-10526570 | None:intergenic | 40.0% | |
| TAAACAGCCAATTCTGACCA+TGG | + | chr2_2:10526555-10526574 | Msa0237390:intron | 40.0% | |
| TTAGATGAATTCACGAGCCA+TGG | - | chr2_2:10526575-10526594 | None:intergenic | 40.0% | |
| CCATATTGTCAATGCAGGAT+CGG | + | chr2_2:10526693-10526712 | Msa0237390:CDS | 40.0% | |
| CAATATGAGAATTAGCTGGG+TGG | - | chr2_2:10526807-10526826 | None:intergenic | 40.0% | |
| AATGGTAGTTCACTGCAAGA+AGG | + | chr2_2:10527094-10527113 | Msa0237390:intron | 40.0% | |
| AGTTCTCACATGTTGTTCGA+CGG | + | chr2_2:10527286-10527305 | Msa0237390:intron | 40.0% | |
| TTCTTCGGCAAGCAACTAAA+AGG | - | chr2_2:10527341-10527360 | None:intergenic | 40.0% | |
| CGTGATGATCACAGATTCTT+CGG | - | chr2_2:10527356-10527375 | None:intergenic | 40.0% | |
| GAACTTCCTGCAATGAAAGA+AGG | - | chr2_2:10527500-10527519 | None:intergenic | 40.0% | |
| ATATGTAATACCAGGTGAGC+AGG | - | chr2_2:10527678-10527697 | None:intergenic | 40.0% | |
| ACATGGATACGTGTCAAACA+AGG | - | chr2_2:10527918-10527937 | None:intergenic | 40.0% | |
| AGATTCATCAGCAAAGCAGA+CGG | - | chr2_2:10528096-10528115 | None:intergenic | 40.0% | |
| AAAAGTGACACAAGCATCTG+CGG | - | chr2_2:10528201-10528220 | None:intergenic | 40.0% | |
| GCTGTTATTATGACCTGTAC+AGG | + | chr2_2:10528364-10528383 | Msa0237390:intron | 40.0% | |
| TATTATGACCTGTACAGGTG+TGG | + | chr2_2:10528369-10528388 | Msa0237390:intron | 40.0% | |
| ATTATGACCTGTACAGGTGT+GGG | + | chr2_2:10528370-10528389 | Msa0237390:intron | 40.0% | |
| ! | ATCTTGATGGGGCATTTAGA+AGG | + | chr2_2:10528431-10528450 | Msa0237390:CDS | 40.0% |
| AAGACCAAACTACCAAGCTA+TGG | + | chr2_2:10528507-10528526 | Msa0237390:CDS | 40.0% | |
| AGACCAAACTACCAAGCTAT+GGG | + | chr2_2:10528508-10528527 | Msa0237390:CDS | 40.0% | |
| ! | ATTTAGGATAGTCCATCCAC+CGG | - | chr2_2:10528692-10528711 | None:intergenic | 40.0% |
| ! | AAGAAATTTAAGGCATCCCC+AGG | + | chr2_2:10528716-10528735 | Msa0237390:CDS | 40.0% |
| CTTGATATGTTGCCAATGAC+TGG | - | chr2_2:10528743-10528762 | None:intergenic | 40.0% | |
| CAGTCATTGGCAACATATCA+AGG | + | chr2_2:10528741-10528760 | Msa0237390:CDS | 40.0% | |
| AGAGCAGTGATATACTAGAG+TGG | - | chr2_2:10528842-10528861 | None:intergenic | 40.0% | |
| TTACCGTGAGCTAAAAGCTA+TGG | - | chr2_2:10528973-10528992 | None:intergenic | 40.0% | |
| TTTGCTTAGTAGCTAGGAGT+TGG | + | chr2_2:10529004-10529023 | Msa0237390:intron | 40.0% | |
| TTGCTTAGTAGCTAGGAGTT+GGG | + | chr2_2:10529005-10529024 | Msa0237390:intron | 40.0% | |
| ! | TCAGGATTTCCAAAAGCACA+CGG | - | chr2_2:10529410-10529429 | None:intergenic | 40.0% |
| !! | GTCAAAAGGGTACTTTCATC+AGG | - | chr2_2:10529428-10529447 | None:intergenic | 40.0% |
| GCATGGTAACCTAAGTCAAA+AGG | - | chr2_2:10529442-10529461 | None:intergenic | 40.0% | |
| ! | TTTTTGACCAGTGCTGCAAA+AGG | - | chr2_2:10529700-10529719 | None:intergenic | 40.0% |
| TGTACACTGTTGGTGTAAAG+AGG | - | chr2_2:10529936-10529955 | None:intergenic | 40.0% | |
| TCACATTCTTTGTAGGTGAG+TGG | + | chr2_2:10530007-10530026 | Msa0237390:intron | 40.0% | |
| CAAGCTGAAGATATCAGCAT+TGG | - | chr2_2:10530100-10530119 | None:intergenic | 40.0% | |
| CAATGCTGATATCTTCAGCT+TGG | + | chr2_2:10530098-10530117 | Msa0237390:CDS | 40.0% | |
| ATTGTTAGGTGGGAATTTCC+TGG | + | chr2_2:10530130-10530149 | Msa0237390:CDS | 40.0% | |
| AGTGGATCTTCTATTTGGAG+GGG | - | chr2_2:10530176-10530195 | None:intergenic | 40.0% | |
| CAGTGGATCTTCTATTTGGA+GGG | - | chr2_2:10530177-10530196 | None:intergenic | 40.0% | |
| ACTCCAGTGGATCTTCTATT+TGG | - | chr2_2:10530181-10530200 | None:intergenic | 40.0% | |
| GATTGGAGAATGAAGCGATG+AGG | - | chr2_2:10525151-10525170 | None:intergenic | 45.0% | |
| TCGCTTCATTCTCCAATCAC+AGG | + | chr2_2:10525153-10525172 | Msa0237390:five_prime_UTR | 45.0% | |
| CTAAAACAAGGGGGGTTTAG+AGG | - | chr2_2:10525193-10525212 | None:intergenic | 45.0% | |
| !!! | AACCCCCCTTGTTTTAGTGA+TGG | + | chr2_2:10525196-10525215 | Msa0237390:intron | 45.0% |
| CACCATCACTAAAACAAGGG+GGG | - | chr2_2:10525201-10525220 | None:intergenic | 45.0% | |
| GGCAGCAGTAATGAATCTAG+TGG | + | chr2_2:10525688-10525707 | Msa0237390:CDS | 45.0% | |
| TCTAGTGGAAGTGGAATGGA+TGG | + | chr2_2:10525703-10525722 | Msa0237390:CDS | 45.0% | |
| TTGCACAGATCACAAAGCTC+AGG | + | chr2_2:10525755-10525774 | Msa0237390:CDS | 45.0% | |
| GACCTTTGGTAGGCAAATAG+CGG | - | chr2_2:10525924-10525943 | None:intergenic | 45.0% | |
| ATTTGCCTACCAAAGGTCCT+TGG | + | chr2_2:10525926-10525945 | Msa0237390:CDS | 45.0% | |
| ACAATCCAAGGACCTTTGGT+AGG | - | chr2_2:10525934-10525953 | None:intergenic | 45.0% | |
| ATCGACAATCCAAGGACCTT+TGG | - | chr2_2:10525938-10525957 | None:intergenic | 45.0% | |
| ! | ACACCCTTAATCGGAAGTGT+CGG | + | chr2_2:10526192-10526211 | Msa0237390:intron | 45.0% |
| ACACCGACACTTCCGATTAA+GGG | - | chr2_2:10526198-10526217 | None:intergenic | 45.0% | |
| AACACCGACACTTCCGATTA+AGG | - | chr2_2:10526199-10526218 | None:intergenic | 45.0% | |
| ! | CATTTGCCAGCTTTCTAGGA+TGG | + | chr2_2:10526518-10526537 | Msa0237390:intron | 45.0% |
| AATCTGCCATCCTAGAAAGC+TGG | - | chr2_2:10526527-10526546 | None:intergenic | 45.0% | |
| ! | CCGATCCTGCATTGACAATA+TGG | - | chr2_2:10526696-10526715 | None:intergenic | 45.0% |
| GACAAAAAAACTCGACCGCA+AGG | + | chr2_2:10526929-10526948 | Msa0237390:intron | 45.0% | |
| TCACTGCAAGAAGGATGCAT+AGG | + | chr2_2:10527103-10527122 | Msa0237390:intron | 45.0% | |
| CACTGCAAGAAGGATGCATA+GGG | + | chr2_2:10527104-10527123 | Msa0237390:intron | 45.0% | |
| ACTGCAAGAAGGATGCATAG+GGG | + | chr2_2:10527105-10527124 | Msa0237390:intron | 45.0% | |
| GAACGTGTAATTGCTAAGGG+TGG | - | chr2_2:10527313-10527332 | None:intergenic | 45.0% | |
| TCATTGCAGGAAGTTCACGA+TGG | + | chr2_2:10527504-10527523 | Msa0237390:intron | 45.0% | |
| GTCTGCTTTGCTGATGAATC+TGG | + | chr2_2:10528095-10528114 | Msa0237390:CDS | 45.0% | |
| TTCATTAATAGTCGCGGGGA+TGG | + | chr2_2:10528461-10528480 | Msa0237390:CDS | 45.0% | |
| ! | TGTCCCATAGCTTGGTAGTT+TGG | - | chr2_2:10528514-10528533 | None:intergenic | 45.0% |
| CTACCAAGCTATGGGACATA+AGG | + | chr2_2:10528516-10528535 | Msa0237390:CDS | 45.0% | |
| CTTCCTTATGTCCCATAGCT+TGG | - | chr2_2:10528522-10528541 | None:intergenic | 45.0% | |
| AGTGCTGCAAAAGGAAATGC+AGG | - | chr2_2:10529691-10529710 | None:intergenic | 45.0% | |
| ! | TGCATTTCCTTTTGCAGCAC+TGG | + | chr2_2:10529690-10529709 | Msa0237390:intron | 45.0% |
| ! | CACCTTTAAGAGATTGCAGC+TGG | + | chr2_2:10530062-10530081 | Msa0237390:CDS | 45.0% |
| TGCCAGCTGCAATCTCTTAA+AGG | - | chr2_2:10530067-10530086 | None:intergenic | 45.0% | |
| CTGATATCTTCAGCTTGGGA+TGG | + | chr2_2:10530103-10530122 | Msa0237390:CDS | 45.0% | |
| CTTGGGATGGTGACATTGTT+AGG | + | chr2_2:10530116-10530135 | Msa0237390:CDS | 45.0% | |
| GGATGGTGACATTGTTAGGT+GGG | + | chr2_2:10530120-10530139 | Msa0237390:CDS | 45.0% | |
| AGGTGGGAATTTCCTGGAAA+TGG | + | chr2_2:10530136-10530155 | Msa0237390:CDS | 45.0% | |
| GTGGATCTTCTATTTGGAGG+GGG | - | chr2_2:10530175-10530194 | None:intergenic | 45.0% | |
| CCAGTGGATCTTCTATTTGG+AGG | - | chr2_2:10530178-10530197 | None:intergenic | 45.0% | |
| CCTCCAAATAGAAGATCCAC+TGG | + | chr2_2:10530175-10530194 | Msa0237390:CDS | 45.0% | |
| TCCACTGGAGTTCGTATTAG+AGG | + | chr2_2:10530190-10530209 | Msa0237390:CDS | 45.0% | |
| ACCTCTAATACGAACTCCAG+TGG | - | chr2_2:10530194-10530213 | None:intergenic | 45.0% | |
| AAGGGGGGTTTAGAGGATTG+AGG | - | chr2_2:10525186-10525205 | None:intergenic | 50.0% | |
| GGAAGTGGAATGGATGGAGA+AGG | + | chr2_2:10525709-10525728 | Msa0237390:CDS | 50.0% | |
| ! | GAGTCGTGTTGTTCCTGGTA+CGG | + | chr2_2:10525798-10525817 | Msa0237390:CDS | 50.0% |
| ! | AGTCGTGTTGTTCCTGGTAC+GGG | + | chr2_2:10525799-10525818 | Msa0237390:CDS | 50.0% |
| ! | AGGATGTTGGTAGGCAGAGA+AGG | + | chr2_2:10525844-10525863 | Msa0237390:CDS | 50.0% |
| AGCCGCTATTTGCCTACCAA+AGG | + | chr2_2:10525919-10525938 | Msa0237390:CDS | 50.0% | |
| TCCTTGGATTGTCGATCGCA+TGG | + | chr2_2:10525942-10525961 | Msa0237390:CDS | 50.0% | |
| CCTTGGATTGTCGATCGCAT+GGG | + | chr2_2:10525943-10525962 | Msa0237390:CDS | 50.0% | |
| !! | GTTGGTGTTGTGTTGGACAC+CGG | + | chr2_2:10526167-10526186 | Msa0237390:intron | 50.0% |
| ACACCGGACACACCCTTAAT+CGG | + | chr2_2:10526183-10526202 | Msa0237390:intron | 50.0% | |
| ! | CTTCCGATTAAGGGTGTGTC+CGG | - | chr2_2:10526189-10526208 | None:intergenic | 50.0% |
| AGCACAAACAACCGCGAGTA+AGG | - | chr2_2:10526334-10526353 | None:intergenic | 50.0% | |
| TCTCTGCCAGAAACTTACGG+TGG | + | chr2_2:10526422-10526441 | Msa0237390:CDS | 50.0% | |
| CTGGCAAATGCCACCTCATA+TGG | - | chr2_2:10526508-10526527 | None:intergenic | 50.0% | |
| GTGGCATTTGCCAGCTTTCT+AGG | + | chr2_2:10526514-10526533 | Msa0237390:intron | 50.0% | |
| TCACGAGCCATGGTCAGAAT+TGG | - | chr2_2:10526565-10526584 | None:intergenic | 50.0% | |
| CTGCAAGAAGGATGCATAGG+GGG | + | chr2_2:10527106-10527125 | Msa0237390:intron | 50.0% | |
| ! | AGGCGTTGCTTTGCTGCAAA+AGG | + | chr2_2:10528395-10528414 | Msa0237390:CDS | 50.0% |
| ACAACCAGCTGGCATCTTGA+TGG | + | chr2_2:10528418-10528437 | Msa0237390:CDS | 50.0% | |
| CAACCAGCTGGCATCTTGAT+GGG | + | chr2_2:10528419-10528438 | Msa0237390:CDS | 50.0% | |
| AACCAGCTGGCATCTTGATG+GGG | + | chr2_2:10528420-10528439 | Msa0237390:CDS | 50.0% | |
| TAAACCTACAGTCTGGGCCT+TGG | + | chr2_2:10528648-10528667 | Msa0237390:intron | 50.0% | |
| ! | TGTTGCCAATGACTGGTCCT+GGG | - | chr2_2:10528736-10528755 | None:intergenic | 50.0% |
| ! | ATGTTGCCAATGACTGGTCC+TGG | - | chr2_2:10528737-10528756 | None:intergenic | 50.0% |
| CCGAACTAGAGTACGCAACA+CGG | - | chr2_2:10528772-10528791 | None:intergenic | 50.0% | |
| CCGTGTTGCGTACTCTAGTT+CGG | + | chr2_2:10528769-10528788 | Msa0237390:CDS | 50.0% | |
| CTTAGTAGCTAGGAGTTGGG+TGG | + | chr2_2:10529008-10529027 | Msa0237390:intron | 50.0% | |
| ! | TCCAAGTCTCCGTGTGCTTT+TGG | + | chr2_2:10529398-10529417 | Msa0237390:intron | 50.0% |
| ! | TCCAAAAGCACACGGAGACT+TGG | - | chr2_2:10529402-10529421 | None:intergenic | 50.0% |
| GGGATGGTGACATTGTTAGG+TGG | + | chr2_2:10530119-10530138 | Msa0237390:CDS | 50.0% | |
| ! | GTCGTGTTGTTCCTGGTACG+GGG | + | chr2_2:10525800-10525819 | Msa0237390:CDS | 55.0% |
| GCAGGTAATTTCCCCGTACC+AGG | - | chr2_2:10525814-10525833 | None:intergenic | 55.0% | |
| CCCATGCGATCGACAATCCA+AGG | - | chr2_2:10525946-10525965 | None:intergenic | 55.0% | |
| CCAGGTGAGCAGGAATTCTG+AGG | - | chr2_2:10527668-10527687 | None:intergenic | 55.0% | |
| CCTCAGAATTCCTGCTCACC+TGG | + | chr2_2:10527665-10527684 | Msa0237390:CDS | 55.0% | |
| GACCTGTACAGGTGTGGGAT+AGG | + | chr2_2:10528375-10528394 | Msa0237390:intron | 55.0% | |
| GCTGCAAAAGGACAACCAGC+TGG | + | chr2_2:10528407-10528426 | Msa0237390:CDS | 55.0% | |
| ! | GTTGCCAATGACTGGTCCTG+GGG | - | chr2_2:10528735-10528754 | None:intergenic | 55.0% |
| CTAGAGTACGCAACACGGAG+TGG | - | chr2_2:10528767-10528786 | None:intergenic | 55.0% | |
| GCAGGAGGTTGACCATTTCC+AGG | - | chr2_2:10530151-10530170 | None:intergenic | 55.0% | |
| CTTCTATTTGGAGGGGGAGC+AGG | - | chr2_2:10530169-10530188 | None:intergenic | 55.0% | |
| GGATGCATAGGGGGAGAGCA+AGG | + | chr2_2:10527115-10527134 | Msa0237390:intron | 60.0% | |
| GATGGGCGAGAGCTTGTGTC+TGG | + | chr2_2:10527591-10527610 | Msa0237390:CDS | 60.0% | |
| CGCCTATCCCACACCTGTAC+AGG | - | chr2_2:10528380-10528399 | None:intergenic | 60.0% | |
| TGCCCCATCAAGATGCCAGC+TGG | - | chr2_2:10528425-10528444 | None:intergenic | 60.0% | |
| GTCTCCAAGGCCCAGACTGT+AGG | - | chr2_2:10528655-10528674 | None:intergenic | 60.0% | |
| AGTCCCACTCGTCGTCTCCA+AGG | - | chr2_2:10528668-10528687 | None:intergenic | 60.0% | |
| GAGACGACGAGTGGGACTAC+CGG | + | chr2_2:10528670-10528689 | Msa0237390:CDS | 60.0% | |
| GCATCCCCAGGACCAGTCAT+TGG | + | chr2_2:10528728-10528747 | Msa0237390:CDS | 60.0% | |
| CTATTTGGAGGGGGAGCAGG+AGG | - | chr2_2:10530166-10530185 | None:intergenic | 60.0% | |
| TGGGCCTTGGAGACGACGAG+TGG | + | chr2_2:10528661-10528680 | Msa0237390:CDS | 65.0% | |
| GGGCCTTGGAGACGACGAGT+GGG | + | chr2_2:10528662-10528681 | Msa0237390:CDS | 65.0% | |
| ACGACGAGTGGGACTACCGG+TGG | + | chr2_2:10528673-10528692 | Msa0237390:CDS | 65.0% | |
| CGAGTGGGACTACCGGTGGA+TGG | + | chr2_2:10528677-10528696 | Msa0237390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 10525013 | 10530452 | 10525013 | ID=Msa0237390;Name=Msa0237390 |
| chr2_2 | mRNA | 10525013 | 10530452 | 10525013 | ID=Msa0237390-mRNA-1;Parent=Msa0237390;Name=Msa0237390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=184|1|1|1|0.88|0.8|10|224|475 |
| chr2_2 | exon | 10525013 | 10525174 | 10525013 | ID=Msa0237390-mRNA-1:exon:4550;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10525627 | 10526026 | 10525627 | ID=Msa0237390-mRNA-1:exon:4551;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10526367 | 10526486 | 10526367 | ID=Msa0237390-mRNA-1:exon:4552;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10526667 | 10526744 | 10526667 | ID=Msa0237390-mRNA-1:exon:4553;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10527513 | 10527686 | 10527513 | ID=Msa0237390-mRNA-1:exon:4554;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10528080 | 10528157 | 10528080 | ID=Msa0237390-mRNA-1:exon:4555;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10528386 | 10528561 | 10528386 | ID=Msa0237390-mRNA-1:exon:4556;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10528659 | 10528814 | 10528659 | ID=Msa0237390-mRNA-1:exon:4557;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10529707 | 10529767 | 10529707 | ID=Msa0237390-mRNA-1:exon:4558;Parent=Msa0237390-mRNA-1 |
| chr2_2 | exon | 10530022 | 10530452 | 10530022 | ID=Msa0237390-mRNA-1:exon:4559;Parent=Msa0237390-mRNA-1 |
| chr2_2 | five_prime_UTR | 10525013 | 10525174 | 10525013 | ID=Msa0237390-mRNA-1:five_prime_utr;Parent=Msa0237390-mRNA-1 |
| chr2_2 | five_prime_UTR | 10525627 | 10525648 | 10525627 | ID=Msa0237390-mRNA-1:five_prime_utr;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10525649 | 10526026 | 10525649 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10526367 | 10526486 | 10526367 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10526667 | 10526744 | 10526667 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10527513 | 10527686 | 10527513 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10528080 | 10528157 | 10528080 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10528386 | 10528561 | 10528386 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10528659 | 10528814 | 10528659 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10529707 | 10529767 | 10529707 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | CDS | 10530022 | 10530228 | 10530022 | ID=Msa0237390-mRNA-1:cds;Parent=Msa0237390-mRNA-1 |
| chr2_2 | three_prime_UTR | 10530229 | 10530452 | 10530229 | ID=Msa0237390-mRNA-1:three_prime_utr;Parent=Msa0237390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
