AlfalfaGEDB | Msa0237760

M. sativa cultivar zhongmu-4 / Msa0237760

KEGG: -
GO: GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237760	THG06872.1	77.358	848	170	7	6	839	129	968	0.0	1332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237760	sp\|Q8W4J2\|MPK16_ARATH	80.106	568	92	8	4	559	8	566	0.0	923

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237760	A0A4S4DUB7	77.358	848	170	7	6	839	129	968	0.0	1332

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0237760	Msa1360120	0.822156	2.754327e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0237760	MtrunA17_Chr2g0287271	99.101	556	5	0	4	559	8	563	0.0	1156
Msa0237760	MtrunA17_Chr4g0065851	85.080	563	70	7	4	559	8	563	0.0	979
Msa0237760	MtrunA17_Chr3g0096631	67.260	562	161	8	4	565	8	546	0.0	727
Msa0237760	MtrunA17_Chr8g0392811	78.251	423	82	3	1	414	89	510	0.0	719
Msa0237760	MtrunA17_Chr6g0482681	77.982	436	85	3	1	426	61	495	0.0	703
Msa0237760	MtrunA17_Chr8g0359091	66.733	505	148	5	3	500	8	499	0.0	682
Msa0237760	MtrunA17_Chr5g0443351	67.203	497	146	4	4	500	5	484	0.0	672
Msa0237760	MtrunA17_Chr2g0314321	67.742	496	132	5	8	483	12	499	0.0	671
Msa0237760	MtrunA17_Chr2g0287261	94.982	279	5	1	560	838	5	274	0.0	526
Msa0237760	MtrunA17_Chr4g0045841	52.108	332	151	4	27	358	61	384	3.31e-116	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0237760	AT5G19010.1	80.106	568	92	8	4	559	8	566	923
Msa0237760	AT3G18040.4	83.374	409	67	1	6	414	117	524	717
Msa0237760	AT3G18040.3	83.374	409	67	1	6	414	117	524	717
Msa0237760	AT3G18040.5	83.374	409	67	1	6	414	3	410	716
Msa0237760	AT2G42880.1	70.530	509	137	6	4	510	8	505	716
Msa0237760	AT3G18040.1	83.374	409	67	1	6	414	8	415	714
Msa0237760	AT2G42880.2	81.643	414	75	1	4	417	8	420	711
Msa0237760	AT1G73670.1	76.291	426	98	2	8	433	77	499	707
Msa0237760	AT1G18150.3	76.744	430	93	2	8	433	91	517	688
Msa0237760	AT1G18150.2	76.744	430	93	2	8	433	91	517	688

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Find 239 sgRNAs with CRISPR-Local

Find 543 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGCTGCTGCTCAAGG+CGG	0.665749	2_2:-11014028	Msa0237760:CDS
AAATTGAAGATTTGCGACTT+TGG	0.405562	2_2:-11018197	Msa0237760:CDS
AAATTGCACCTTGGAGAAAA+AGG	0.297546	2_2:+11017992	None:intergenic
AACACGCTTCTTCACTTCCC+AGG	0.534871	2_2:-11014698	Msa0237760:intron
AACAGGATTATGTTGCAACG+AGG	0.769892	2_2:-11018043	Msa0237760:intron
AACTCCCTAATCTGACTCTT+CGG	0.482542	2_2:+11012528	None:intergenic
AACTTCTTTGATGCAACATT+TGG	0.293248	2_2:+11014462	None:intergenic
AAGAAGAAGAACGGTTATTA+TGG	0.197112	2_2:+11012937	None:intergenic
AAGCAAACTCTCCTTCGTCT+CGG	0.615954	2_2:+11012359	None:intergenic
AAGGCGGAGCTGGTGGTCAG+TGG	0.582473	2_2:-11014012	Msa0237760:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAAAATAGAGGAAGTGAT+TGG	-	chr2_2:11011534-11011553	Msa0237760:three_prime_UTR	30.0%
TCTTTGAATTCTCTTCTTGA+AGG	+	chr2_2:11011744-11011763	None:intergenic	30.0%
AAATTGAAGATTTGCGACTT+TGG	-	chr2_2:11012070-11012089	Msa0237760:intron	30.0%
TGTATCATTAAAAGCTACTC+GGG	+	chr2_2:11012101-11012120	None:intergenic	30.0%
GTGTATCATTAAAAGCTACT+CGG	+	chr2_2:11012102-11012121	None:intergenic	30.0%
ATATTAGGTGATAGGTTCAT+GGG	+	chr2_2:11012158-11012177	None:intergenic	30.0%
TATATTAGGTGATAGGTTCA+TGG	+	chr2_2:11012159-11012178	None:intergenic	30.0%
AGAGCTATATATTAGGTGAT+AGG	+	chr2_2:11012166-11012185	None:intergenic	30.0%
GAAAAGCAGAGCTATATATT+AGG	+	chr2_2:11012173-11012192	None:intergenic	30.0%
TCATAACATAAATTGCACCT+TGG	+	chr2_2:11012287-11012306	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	11011474	11018815	11011474	ID=Msa0237760;Name=Msa0237760
chr2_2	mRNA	11011474	11018815	11011474	ID=Msa0237760-mRNA-1;Parent=Msa0237760;Name=Msa0237760-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0.9\|0.72\|1\|1\|1\|11\|156\|851
chr2_2	exon	11011474	11011671	11011474	ID=Msa0237760-mRNA-1:exon:4847;Parent=Msa0237760-mRNA-1
chr2_2	exon	11012227	11013064	11012227	ID=Msa0237760-mRNA-1:exon:4846;Parent=Msa0237760-mRNA-1
chr2_2	exon	11014013	11014292	11014013	ID=Msa0237760-mRNA-1:exon:4845;Parent=Msa0237760-mRNA-1
chr2_2	exon	11014383	11014546	11014383	ID=Msa0237760-mRNA-1:exon:4844;Parent=Msa0237760-mRNA-1
chr2_2	exon	11014699	11014803	11014699	ID=Msa0237760-mRNA-1:exon:4843;Parent=Msa0237760-mRNA-1
chr2_2	exon	11015848	11016059	11015848	ID=Msa0237760-mRNA-1:exon:4842;Parent=Msa0237760-mRNA-1
chr2_2	exon	11016155	11016310	11016155	ID=Msa0237760-mRNA-1:exon:4841;Parent=Msa0237760-mRNA-1
chr2_2	exon	11016393	11016542	11016393	ID=Msa0237760-mRNA-1:exon:4840;Parent=Msa0237760-mRNA-1
chr2_2	exon	11018001	11018060	11018001	ID=Msa0237760-mRNA-1:exon:4839;Parent=Msa0237760-mRNA-1
chr2_2	exon	11018148	11018275	11018148	ID=Msa0237760-mRNA-1:exon:4838;Parent=Msa0237760-mRNA-1
chr2_2	exon	11018395	11018815	11018395	ID=Msa0237760-mRNA-1:exon:4837;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11018395	11018815	11018395	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11018148	11018275	11018148	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11018001	11018060	11018001	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11016393	11016542	11016393	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11016155	11016310	11016155	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11015848	11016059	11015848	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11014699	11014803	11014699	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11014383	11014546	11014383	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11014013	11014292	11014013	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11012227	11013064	11012227	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	CDS	11011630	11011671	11011630	ID=Msa0237760-mRNA-1:cds;Parent=Msa0237760-mRNA-1
chr2_2	three_prime_UTR	11011474	11011629	11011474	ID=Msa0237760-mRNA-1:three_prime_utr;Parent=Msa0237760-mRNA-1

Gene Sequence

>Msa0237760

ATGTTTATGCAGTCATCTGTGGATGTAGATTTCTTTACCGAGTATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCAGCATACGATACACACACTGGAGAAAAGGTTGCTATAAAGAAAATCAATGACATATTTGAACATGTATCTGATGCCACTCGCATTCTTCGCGAGATTAAGCTTCTTAGACTTTTACGCCATCCGGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCAAGAAGAGAATTCAAAGATATATATGTTGTATTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATCTGACACCAGAGCATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCGAAAAACATTTTGGCGAATGCTGACTGCAAATTGAAGATTTGCGACTTTGGTCTTGCCCGAGTAGCTTTTAATGATACACCCACTGCTATATTCTGGACAGATTATGTTGCAACGAGGTGGTATAGAGCTCCTGAATTGTGTGGGTCCTTTTTCTCCAAGTATACACGAGCTATAGACATTTGGAGCATCGGTTGCATCTTCGCAGAACTTTTAACTGGAAAACCTCTTTTCCCTGGGAAGAATGTTGTCCATCAGCTGGATATCATGACTGATTTTCTTGGAACACCATCTCCTGATGCCATTGCAAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAGCCAATTCCTTTCTCGCACAAATTTCCTAATGCTGATCCCCTTGCTCTTCGGCTGTTAGAAAGAATGCTGGCATTTGAGGCTAAGGATCGGCCTACGGCTGAAGAGGCCCTAGCAGATCCATATTTCAAAGGATTGGCCAAGGTCGAGAGAGAACCTTCTGCTCAGCCAGTTACTAAGATGGAATTTGAATTTGAGAGACGGAGGATAACAAAGGAAGATGTACGAGAGCTTATATACCGAGAAATATTGGAATACCATCCGAAGATGTTAAAGGAGTTTCTAGAGGGAGCAGAGCCAACGGGTTTCATGTATCCAAGTGCTGTGGACCTTTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGCAAAGGAGGAACTGTTGCTCCACCTGAGAGGCAACACGCTTCTTCACTTCCCAGAGCGTGCGTGTTGTATTCTGATAACACGATGCAGAATACGGCTGAGGTTGCTGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAGACCAGCTGTAGATAGGAGTAGCGATATTCAGCCGATGACCCGGATTCCATTACAAGCTCCTCAAAATATGCAAGGTCTTGCTGCAAGGCCTGGAAAAGTTGTTGGTTCTGCAATGCGTTACAACAACTGTGGGGTGGCAGTGACAGCAGAAACCGAACAGCGGAGGGTGGTTAGGAATCCACCCGTTTCATCTCAGTATGCTGCTTCGAGCTGTTCGTATCCCAGGAGAAATCCAAACTATAAAAGTGAAAGGGTAGAAGATGATGTGATTGAAGGTTCAAATGGGCTGCAGCCAAAGCCTCAATACATAGCAAGAAAAGTTGCTGCTGCTCAAGGCGGAGCTGGTGGTCAGTGGATTTTGAACTCTTCTCTCACCCTTCGCCCCCTTCCCTCTCTCCCACCACCACTACCCAAACCAAAACCTAACAACTTCTCATTCCAAATTCTCAATTCGTTTACCCATAATAACCGTTCTTCTTCTTCTTCTTCTTCCCATATGGGTGATGCCCGCAGACCCTCCTCAGTCCCTATCCCCTCTCTAGAAAACTCGAACCGCTCCGAACTCCTCCGCGCTCTAGAATCTTCCATCGGCACTTCCTTCTCCTCTTCCCCTTTCCTCCCTAACCCTAACCCTCTCATCCTCGTCATCTCCGGCCCTAGCGGCGTCGGCAAAGACGCTCTCATCTCAAACCTCCGCGCCTCCCGTCCTAACATCCATTTCGTCGTCACCGCCACCACTCGTCCTCCTCGTCCCACCGAAACTCATGGCATAGACTATCTCTTCCTCTCCAAACAAGAATTCATTCATTCAATCGAAAAAGACGAGTTTCTCGAATACGCTCTTGTTTACGGTGATTACAAAGGCGTACCGAAGAGTCAGATTAGGGAGTTTATGGCGAAAGGGTGTGATGTTGTGTTGAGGGTGGATATTCAAGGTGCGGAGACTTTGAGGAAGGTTTTGGGGAAATCGGCGGTTTTTGTGTTTTTGATGGCGGAGAGTGAAATGGCGATGGTGGAGAGGTTGGTGGATCGGAATACCGAGACGAAGGAGAGTTTGCTTGTTAGGATTGCGACTGCGAAGGAAGAGATGAAGCATGTGAGGAATTTTGATTATGTTGTTGTGAATGCTAAGGGTAAGCTTGAGAATGCTGTGAAATTGTTGGAGTCTATTATTGATGCCGAGAAAGCTAAGGTCAGTTTGTTTCAACTGCTATCAAGCATTTTACTGAAATGA

Protein sequence

>Msa0237760

MFMQSSVDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTRAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKKPIPFSHKFPNADPLALRLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGAEPTGFMYPSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDNTMQNTAEVADDLSKCCIKEVERPAVDRSSDIQPMTRIPLQAPQNMQGLAARPGKVVGSAMRYNNCGVAVTAETEQRRVVRNPPVSSQYAASSCSYPRRNPNYKSERVEDDVIEGSNGLQPKPQYIARKVAAAQGGAGGQWILNSSLTLRPLPSLPPPLPKPKPNNFSFQILNSFTHNNRSSSSSSSHMGDARRPSSVPIPSLENSNRSELLRALESSIGTSFSSSPFLPNPNPLILVISGPSGVGKDALISNLRASRPNIHFVVTATTRPPRPTETHGIDYLFLSKQEFIHSIEKDEFLEYALVYGDYKGVPKSQIREFMAKGCDVVLRVDIQGAETLRKVLGKSAVFVFLMAESEMAMVERLVDRNTETKESLLVRIATAKEEMKHVRNFDYVVVNAKGKLENAVKLLESIIDAEKAKVSLFQLLSSILLK*