AlfalfaGEDB | Msa0239910

M. sativa cultivar zhongmu-4 / Msa0239910

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239910	XP_003594367.1	99.045	314	2	1	1	314	1	313	0.0	642

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239910	sp\|Q94A57\|PHL2_ARATH	44.922	256	128	3	8	256	9	258	1.04e-63	206

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239910	A2Q5E6	99.045	314	2	1	1	314	1	313	0.0	642

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TFs/TRs:

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Gene ID	Type	Classification
Msa0239910	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0239910	Msa0277920	0.906349	1.631142e-80	-8.615850e-47
Msa0239910	Msa0317580	0.995515	4.812047e-217	-8.615850e-47
Msa0239910	Msa1144270	0.849097	4.023810e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239910	MtrunA17_Chr2g0290991	99.045	314	2	1	1	314	1	313	0.0	642
Msa0239910	MtrunA17_Chr1g0197171	70.062	324	58	7	1	314	1	295	2.30e-151	426
Msa0239910	MtrunA17_Chr8g0356501	52.514	179	68	5	28	204	25	188	2.18e-47	162
Msa0239910	MtrunA17_Chr2g0310011	57.432	148	52	3	28	174	23	160	6.82e-45	156
Msa0239910	MtrunA17_Chr5g0409731	51.829	164	69	5	22	180	8	166	3.47e-43	150
Msa0239910	MtrunA17_Chr5g0417521	43.396	212	101	6	33	236	8	208	2.75e-42	149
Msa0239910	MtrunA17_Chr2g0321461	39.184	245	124	7	26	260	31	260	6.36e-41	146
Msa0239910	MtrunA17_Chr6g0461641	44.048	168	89	2	33	195	35	202	9.35e-40	143
Msa0239910	MtrunA17_Chr4g0042451	48.408	157	73	4	33	185	10	162	1.80e-39	141
Msa0239910	MtrunA17_Chr7g0254981	47.260	146	52	2	40	177	50	178	5.84e-38	136

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0239910	AT3G24120.1	44.922	256	128	3	8	256	9	258	1.06e-64	206
Msa0239910	AT3G24120.2	44.402	259	128	4	8	256	9	261	1.42e-62	201
Msa0239910	AT4G13640.1	45.570	237	106	5	30	256	27	250	7.81e-61	196
Msa0239910	AT4G13640.2	45.000	240	106	6	30	256	27	253	1.05e-58	191
Msa0239910	AT1G79430.2	53.459	159	64	2	28	185	22	171	3.04e-47	162
Msa0239910	AT3G04030.3	40.316	253	134	8	26	271	31	273	1.60e-43	154
Msa0239910	AT5G18240.1	38.735	253	120	7	19	258	28	258	1.13e-42	152
Msa0239910	AT5G18240.4	38.735	253	120	7	19	258	28	258	1.13e-42	152
Msa0239910	AT1G69580.1	45.833	168	85	2	24	185	18	185	7.37e-42	148
Msa0239910	AT1G69580.2	44.970	169	86	2	24	185	18	186	7.34e-41	145

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Find 122 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAGATGATCAACCA+TGG	0.615318	2_2:-14522477	None:intergenic
AAAACTCAAGCCATCAATTT+AGG	0.298571	2_2:+14522722	Msa0239910:CDS
AAACCAAGATGATCAACCAT+GGG	0.587430	2_2:-14522476	None:intergenic
AAAGGGACAAGATCCCCGAA+AGG	0.708577	2_2:+14518078	Msa0239910:five_prime_UTR
AAATTTATGGTAGGGATGAC+AGG	0.486552	2_2:+14521567	Msa0239910:intron
AACAATCGGCTCTTTGGGGT+GGG	0.480882	2_2:-14522565	None:intergenic
AACCAAGATGATCAACCATG+GGG	0.749982	2_2:-14522475	None:intergenic
AACTTTGAAATGAAATTCAA+TGG	0.394919	2_2:-14518290	None:intergenic
AAGCAATCCGGAAAAGATAT+AGG	0.358737	2_2:+14521122	Msa0239910:CDS
AAGTAAACTGCATTTGCAAG+TGG	0.612386	2_2:+14521809	Msa0239910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGAAATTGACAATGAAGA+TGG	-	chr2_2:14518113-14518132	None:intergenic	30.0%
CAATTTCACTCTTTCTTGTA+CGG	+	chr2_2:14518123-14518142	Msa0239910:intron	30.0%
GGTGAAAAAGAGAAAACTTT+AGG	-	chr2_2:14518212-14518231	None:intergenic	30.0%
TTTCACCATTTCAGTCAAAT+GGG	+	chr2_2:14518225-14518244	Msa0239910:intron	30.0%
TAATACCCATTTGACTGAAA+TGG	-	chr2_2:14518233-14518252	None:intergenic	30.0%
ATCTAGGAAACATCTTCTTA+TGG	-	chr2_2:14518363-14518382	None:intergenic	30.0%
AATTGGTTGAGTATCTGAAT+TGG	+	chr2_2:14518645-14518664	Msa0239910:intron	30.0%
ACAAAACTAACTCCATAGAT+GGG	-	chr2_2:14518932-14518951	None:intergenic	30.0%
AACAAAACTAACTCCATAGA+TGG	-	chr2_2:14518933-14518952	None:intergenic	30.0%
ATTCAGATCATCAACAAACA+AGG	-	chr2_2:14519348-14519367	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	14518018	14523133	14518018	ID=Msa0239910;Name=Msa0239910
chr2_2	mRNA	14518018	14523133	14518018	ID=Msa0239910-mRNA-1;Parent=Msa0239910;Name=Msa0239910-mRNA-1;_AED=0.07;_eAED=0.07;_QI=253\|1\|1\|1\|0.83\|0.71\|7\|346\|314
chr2_2	exon	14518018	14518139	14518018	ID=Msa0239910-mRNA-1:exon:6023;Parent=Msa0239910-mRNA-1
chr2_2	exon	14518239	14518562	14518239	ID=Msa0239910-mRNA-1:exon:6024;Parent=Msa0239910-mRNA-1
chr2_2	exon	14520949	14521025	14520949	ID=Msa0239910-mRNA-1:exon:6025;Parent=Msa0239910-mRNA-1
chr2_2	exon	14521107	14521161	14521107	ID=Msa0239910-mRNA-1:exon:6026;Parent=Msa0239910-mRNA-1
chr2_2	exon	14521580	14521658	14521580	ID=Msa0239910-mRNA-1:exon:6027;Parent=Msa0239910-mRNA-1
chr2_2	exon	14521764	14521833	14521764	ID=Msa0239910-mRNA-1:exon:6028;Parent=Msa0239910-mRNA-1
chr2_2	exon	14522317	14523133	14522317	ID=Msa0239910-mRNA-1:exon:6029;Parent=Msa0239910-mRNA-1
chr2_2	five_prime_UTR	14518018	14518139	14518018	ID=Msa0239910-mRNA-1:five_prime_utr;Parent=Msa0239910-mRNA-1
chr2_2	five_prime_UTR	14518239	14518369	14518239	ID=Msa0239910-mRNA-1:five_prime_utr;Parent=Msa0239910-mRNA-1
chr2_2	CDS	14518370	14518562	14518370	ID=Msa0239910-mRNA-1:cds;Parent=Msa0239910-mRNA-1
chr2_2	CDS	14520949	14521025	14520949	ID=Msa0239910-mRNA-1:cds;Parent=Msa0239910-mRNA-1
chr2_2	CDS	14521107	14521161	14521107	ID=Msa0239910-mRNA-1:cds;Parent=Msa0239910-mRNA-1
chr2_2	CDS	14521580	14521658	14521580	ID=Msa0239910-mRNA-1:cds;Parent=Msa0239910-mRNA-1
chr2_2	CDS	14521764	14521833	14521764	ID=Msa0239910-mRNA-1:cds;Parent=Msa0239910-mRNA-1
chr2_2	CDS	14522317	14522787	14522317	ID=Msa0239910-mRNA-1:cds;Parent=Msa0239910-mRNA-1
chr2_2	three_prime_UTR	14522788	14523133	14522788	ID=Msa0239910-mRNA-1:three_prime_utr;Parent=Msa0239910-mRNA-1

Gene Sequence

>Msa0239910

ATGTTTCCTAGATTGATACACCCTCATGATGGAATTGTTGTTGGACAAGATGATTTGCAAGGTGGTGGTGTCTCTAATCATAAGGGTGACCCTTGTCTTGTTTTGACTGCTGATCCAAAACCTCGTCTTCGTTGGACTCAAGATTTGCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGTCCCAGTAAAGCCACACCAAAAGCAATCATGCGGACAATGAACGTCAAGGGTTTGACTCTATTTCATTTAAAGAGTCATCTTCAGAAATACAGACTTGGTAAGCAATCCGGAAAAGATATAGGGGAGGGATGCAAAGATGGGATGACAGGATCCTATCTTTTAGAAAGCCCCGGCACTGAAAACCCATCTCCAAAGTTGCCTACTTCCGATACAAACGAGGGTTATGAAATCAAGGAGGCGTTAAGAGCACAGATGGAAGTGCAAAGTAAACTGCATTTGCAAGTGGAGGCAGAGAAGCACTTGCAGATTCGCCAGGATGCGGAACGAAGATACATGGCTATGCTTGAAAGAGCTTGCAAGATGCTGGCTGATCAATTTATTGGTGCTACCGTTATAGACACAGACAGCCAAAAGTTCCAAGGAATTGAAAATAAAGCACCAAGAGGCCCCATGGTTGATCATCTTGGTTTTTATTCTTTGCCATCTACTGAGGCGGCCGGGGTGAATGTTCAGGAAGAAGAAGTTCCTCAAACCATCCCACCCCAAAGAGCCGATTGTTCAACCGAAAGTTGTTTAACATCGCATGAGAGCTCTGGAGGATTGACTTTAGAAGGATCTCAAGTTGGAGGGAAAAGGAGAATGCTAGGTATGGACTCTATGGCAGCACCTTTGATTTGGAGTGAAGCAAAGATGAAAACTCAAGCCATCAATTTAGGCCAAGGTAATCATCCTCTTGGAATATCTAGGTATGGCATGTAA

Protein sequence

>Msa0239910

MFPRLIHPHDGIVVGQDDLQGGGVSNHKGDPCLVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGEGCKDGMTGSYLLESPGTENPSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGATVIDTDSQKFQGIENKAPRGPMVDHLGFYSLPSTEAAGVNVQEEEVPQTIPPQRADCSTESCLTSHESSGGLTLEGSQVGGKRRMLGMDSMAAPLIWSEAKMKTQAINLGQGNHPLGISRYGM*