AlfalfaGEDB | Msa0240040

M. sativa cultivar zhongmu-4 / Msa0240040

KEGG: K04730
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009786 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009986 GO:0009987 GO:0010008 GO:0010015 GO:0010016 GO:0010101 GO:0010102 GO:0010154 GO:0010311 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0030054 GO:0030139 GO:0030154 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032585 GO:0036211 GO:0038023 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046983 GO:0048316 GO:0048364 GO:0048367 GO:0048439 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048829 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0055044 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:1905393
PFAM: PF13540.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240040	XP_003597519.1	99.323	886	6	0	1	886	36	921	0.0	1820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240040	sp\|Q9LX29\|ACR4L_ARATH	67.377	892	256	10	1	886	33	895	0.0	1210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240040	G7IHU8	99.323	886	6	0	1	886	36	921	0.0	1820

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0144220	Msa0240040	0.815218	1.034908e-51	-8.615850e-47
Msa0240040	Msa0302970	0.884151	2.448989e-71	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240040	MtrunA17_Chr2g0329401	99.323	886	6	0	1	886	36	921	0.0	1820
Msa0240040	MtrunA17_Chr4g0033571	75.000	896	197	14	1	886	36	914	0.0	1334
Msa0240040	MtrunA17_Chr1g0181291	32.306	811	424	30	1	762	26	760	2.59e-113	364
Msa0240040	MtrunA17_Chr3g0104881	32.310	814	434	27	13	769	35	788	7.09e-108	351
Msa0240040	MtrunA17_Chr3g0113601	31.746	819	432	27	2	769	28	770	1.19e-98	326
Msa0240040	MtrunA17_Chr4g0017241	49.536	323	138	6	473	778	462	776	6.49e-87	294
Msa0240040	MtrunA17_Chr4g0017241	25.269	372	204	21	1	343	27	353	1.35e-11	68.6
Msa0240040	MtrunA17_Chr5g0437101	31.266	790	436	30	46	766	35	786	1.91e-85	290
Msa0240040	MtrunA17_Chr5g0437101	26.174	298	178	16	10	291	39	310	8.99e-15	79.0
Msa0240040	MtrunA17_Chr2g0320111	38.058	381	206	8	392	760	8	370	3.40e-75	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240040	AT3G59420.1	67.377	892	256	10	1	886	33	895	0.0	1210
Msa0240040	AT2G39180.1	30.760	803	449	23	3	761	28	767	8.95e-107	347
Msa0240040	AT3G09780.1	32.226	813	422	29	4	762	30	767	1.36e-103	339
Msa0240040	AT5G47850.1	33.662	710	377	29	120	771	67	740	4.29e-86	291
Msa0240040	AT3G55950.1	47.634	317	145	7	471	766	480	796	8.06e-77	267
Msa0240040	AT3G55950.1	24.921	317	208	13	2	314	35	325	2.46e-13	74.7
Msa0240040	AT3G58690.1	44.710	293	155	4	473	760	73	363	8.87e-76	253
Msa0240040	AT3G04690.1	45.270	296	155	3	473	766	503	793	3.38e-75	263
Msa0240040	AT5G28680.1	44.595	296	157	3	473	766	507	797	5.67e-75	263
Msa0240040	AT5G28680.2	44.595	296	157	3	473	766	507	797	5.67e-75	263

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Find 196 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTTGATCAATACA+AGG	0.614511	2_2:+14789090	None:intergenic
AAACATCTGACTTTGTTGTG+AGG	0.678035	2_2:+14789394	None:intergenic
AAAGTGTTTGACATTGCAGC+TGG	0.555497	2_2:-14790608	Msa0240040:CDS
AACAGATAGTAGCTCCCCAC+TGG	0.522780	2_2:-14789475	Msa0240040:CDS
AACAGTTGTTGCTGTTAAAA+GGG	0.462565	2_2:-14789874	Msa0240040:CDS
AACTATGGTAATGTTGTTGG+TGG	0.578343	2_2:-14788847	Msa0240040:CDS
AAGAAGGTAACATTGTTCAA+TGG	0.551518	2_2:-14789308	Msa0240040:CDS
AAGAGCTTTAGCAATGTTAA+TGG	0.285766	2_2:-14789118	Msa0240040:CDS
AAGTAGTAGCCATATAGAAA+TGG	0.380949	2_2:-14791194	Msa0240040:CDS
AAGTCAGATGTTTATAGCTT+TGG	0.382637	2_2:-14789384	Msa0240040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCAAATCAACCATATTGT+TGG	-	chr2_2:14788943-14788962	Msa0240040:CDS	30.0%
TCAAATCAACCATATTGTTG+GGG	-	chr2_2:14788945-14788964	Msa0240040:CDS	30.0%
AAGTAGTAGCCATATAGAAA+TGG	-	chr2_2:14788968-14788987	Msa0240040:CDS	30.0%
AGTAGTAGCCATATAGAAAT+GGG	-	chr2_2:14788969-14788988	Msa0240040:CDS	30.0%
ACAAAGAACTATGTGTTTGA+TGG	-	chr2_2:14789128-14789147	Msa0240040:CDS	30.0%
AGGTTAGTACTCAAGTTATT+AGG	-	chr2_2:14789234-14789253	Msa0240040:CDS	30.0%
TCAAACACTTTAATCCCTTT+AGG	+	chr2_2:14789545-14789564	None:intergenic	30.0%
TCAATTTCATAGTAACTTGG+AGG	+	chr2_2:14789707-14789726	None:intergenic	30.0%
GATGAAATGTATCAGAAAAG+TGG	-	chr2_2:14789803-14789822	Msa0240040:CDS	30.0%
ACTACTTGTATATGAGTACA+TGG	-	chr2_2:14790435-14790454	Msa0240040:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	14788762	14791422	14788762	ID=Msa0240040;Name=Msa0240040
chr2_2	mRNA	14788762	14791422	14788762	ID=Msa0240040-mRNA-1;Parent=Msa0240040;Name=Msa0240040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|886
chr2_2	exon	14788762	14791422	14788762	ID=Msa0240040-mRNA-1:exon:6129;Parent=Msa0240040-mRNA-1
chr2_2	CDS	14788762	14791422	14788762	ID=Msa0240040-mRNA-1:cds;Parent=Msa0240040-mRNA-1

Gene Sequence

>Msa0240040

ATGTCATCAATTGCTGTCTCTTATGGAGATAAAGGTTCTGCTTTCTGTGGCTTGAAATCAGATGGATCTCACACTGTGACATGTTATGGAATGAACTCGGCCATAGTTTATGGAACACCATCTCAGTTTCCATTCCTTGGTCTAACTTCTGGTGATGGTTTTGTTTGTGGACTTTTAATGAGTTCAAATCAACCATATTGTTGGGGAAGTAGTAGCCATATAGAAATGGGTGTGCCACAACCTATGTTTAAGGATGCTCAGTACTTAGAAATCAGTGCCGGCGATTATCATGTTTGTGGATTGAGGAAGCCTTTGACAGGAAGACACAGGAACTTTTCTTTTGTTGATTGTTGGGGATACAATATGACAAAGAACTATGTGTTTGATGGACAGATTCAATCGATTTCGGCAGGTTCTGAGTTCAATTGTGGACTTTTTTCGCAGAATCGGACGGTATTTTGTTGGGGTGATGAGGTTAGTACTCAAGTTATTAGGTTGATTCCACAAGGAATGAGGTTTCAGAAGGTGTCTTGTGGAGGGTATCATGTATGTGGAATCTTGGAAGGTGTGAATTCTAGAACTGTTTGTTGGGGGAGAAGTTTGGATTTGGAGGAAGAAATTTCATTGATACCTAATCAAGGACAAGGTGGTAATGTTGAGTTGGCTCCAAATGATCCTATGCTTTCTGTTGTTGGAGGAAAGTTTCATGCTTGTGGCATTAAGAGCTATGATCATGGAGTGATTTGTTGGGGGTTAAATTTGAAAACAAGCACAAAAGTTCCTAAAGGGATTAAAGTGTTTGACATTGCAGCTGGTGATTATTTTACCTGTGGAATTCTTGTTGCAAAATCTCTTGAATCTATTTGTTGGGGTGTTGGATTTCCAACTTCTCTACCTTTGGCTGTTTCACCGAGAACAAGAAAGTGTTTGTCTGCACCTTGTCCTCCAAGTTACTATGAAATTGAAAAGGATCAACAAAATGGTCTAATTTGTCAAGATCCAAATTCTCACCTTTGTGTTCCATGCAGTGGTGTTTGTCCTGATGAAATGTATCAGAAAAGTGGTTGCAATTTGAAATCTGATATACTATGCGAATATAATTGTTCTGTTTGTTCTTCACCTGAATGCTTCTCAAACTGTTCCTCCTCTTCTTCCAATGCTGCTAACGGTGGGAAGAAAAATGAAAGATTTTGGTCTATGCAGTTGATAGTTATTGTTGGTGAGATAGTATTTGCTGTTTTTATAGTCAGTGCTGTCTCTATTACCGCGGTTATGTATGTTCGCTACAAGCTAAGAGATTGTGAGTGTTCAACAAGACCGTTAAACTCGATGAAGAGACTCAATGTTAGTTCTTCGGTTCAAAAGGATAACGGTAAGGTTCGACCGGACGCGGAGGAGATCAAGATAAGAAGGGCTCAGAAGTTCTCCTATGAGGAACTTGAAAATGCAACCTGTGGATTCAAAGAAGAATCAATTGTTGGGAAAGGAAGTTTTTCATGTGTGTTCAAAGGTGTTCTCAAAGATGGAACAGTTGTTGCTGTTAAAAGGGCTATTATGTCTCCAAACATGCAGAAAAATTCCAAAGAGTTTCACACAGAACTTGACTTGTTATCTAGGTTGAACCATGCTCATTTGCTCAACCTATTAGGCTATTGTGAAGAAGGAGGTGAAAGACTACTTGTATATGAGTACATGGCACATGGATCATTGCATCAACACCTTCATGGCAAAAACAAAGAGTTGAAAGAGCAATTAGATTGGATCAGAAGGGTAACAATTGCGGTCCAAGCAGCTCGAGGAATCGAATATCTCCACGGCTATGCATGCCCACCGGTGATTCATAGAGACATCAAATCTTCAAACATACTCATTGATGAAGAACACAATGCAAGAGTTTCGGATTTCGGTTTGTCATTACTAGGTCCAACAGATAGTAGCTCCCCACTGGCCGAGTTACCGGCCGGAACACTTGGTTATCTTGATCCTGAATACTATAGACTTCACTACCTCACAACAAAGTCAGATGTTTATAGCTTTGGTGTTCTACTATTAGAAATTCTAAGTGGTAGAAAAGCTATTGATATGCAATACGAAGAAGGTAACATTGTTCAATGGTCAGTTCCATTAATAAAATCAGGTGATATAGCTTCGATTTTAGACCCTTGTTTGAAACCACCTTCGGATATTGAAGCATTGAGAAGAATAGCAAATGTTGCTTGTAAATGTGTGAGAATGAGAGGTAAAGATAGGCCTTCAATGGACAAAGTAACAACAAGTTTGGAAAGAGCTTTAGCAATGTTAATGGGAAGTCCTTGTATTGATCAACCAATTTTGCCAACTGAGGTTGTTTTAGGAAGTAATAGAATGCATAAGAAAACATCTCAAAGGTCTTCAAATCGGTCGGCTTCAGAAATCGATGTAGTCGAAGGTGAAGATCAAAGGTTTGAGTTTAGAGCACCTTCTTGGATAACTTTTCCAAGTGTAACTTCTTCTCAAAGAAGAAAGTCTTCAGGGTCAGAAGGTGAAGTTGAAGTGAAGATTGTTGAAGGAAGAAACTATGGTAATGTTGTTGGTGGTGGAGGTGATGTTTTGAGAAGTCTTGAGGAAGAAATTGGTCCTGCTTCTCCTCAAGAGAGACTCTTCTTGCAACACAACTTCTAA

Protein sequence

>Msa0240040

MSSIAVSYGDKGSAFCGLKSDGSHTVTCYGMNSAIVYGTPSQFPFLGLTSGDGFVCGLLMSSNQPYCWGSSSHIEMGVPQPMFKDAQYLEISAGDYHVCGLRKPLTGRHRNFSFVDCWGYNMTKNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDEVSTQVIRLIPQGMRFQKVSCGGYHVCGILEGVNSRTVCWGRSLDLEEEISLIPNQGQGGNVELAPNDPMLSVVGGKFHACGIKSYDHGVICWGLNLKTSTKVPKGIKVFDIAAGDYFTCGILVAKSLESICWGVGFPTSLPLAVSPRTRKCLSAPCPPSYYEIEKDQQNGLICQDPNSHLCVPCSGVCPDEMYQKSGCNLKSDILCEYNCSVCSSPECFSNCSSSSSNAANGGKKNERFWSMQLIVIVGEIVFAVFIVSAVSITAVMYVRYKLRDCECSTRPLNSMKRLNVSSSVQKDNGKVRPDAEEIKIRRAQKFSYEELENATCGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGKNKELKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWSVPLIKSGDIASILDPCLKPPSDIEALRRIANVACKCVRMRGKDRPSMDKVTTSLERALAMLMGSPCIDQPILPTEVVLGSNRMHKKTSQRSSNRSASEIDVVEGEDQRFEFRAPSWITFPSVTSSQRRKSSGSEGEVEVKIVEGRNYGNVVGGGGDVLRSLEEEIGPASPQERLFLQHNF*