Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240130 | XP_003597516.1 | 96.032 | 252 | 10 | 0 | 62 | 313 | 1 | 252 | 2.92e-178 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240130 | sp|Q9SZL8|FRS5_ARATH | 38.251 | 183 | 103 | 3 | 58 | 231 | 2 | 183 | 2.82e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240130 | G7IHU5 | 96.032 | 252 | 10 | 0 | 62 | 313 | 1 | 252 | 1.40e-178 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0240130 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0240090 | Msa0240130 | 0.814447 | 1.533788e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240130 | MtrunA17_Chr2g0329361 | 96.032 | 252 | 10 | 0 | 62 | 313 | 1 | 252 | 0.0 | 503 |
| Msa0240130 | MtrunA17_Chr7g0233911 | 37.864 | 206 | 108 | 6 | 106 | 306 | 15 | 205 | 7.39e-42 | 144 |
| Msa0240130 | MtrunA17_Chr3g0078041 | 36.269 | 193 | 103 | 5 | 116 | 304 | 44 | 220 | 1.60e-34 | 125 |
| Msa0240130 | MtrunA17_Chr2g0329421 | 36.649 | 191 | 106 | 5 | 121 | 309 | 26 | 203 | 1.41e-33 | 122 |
| Msa0240130 | MtrunA17_Chr4g0033611 | 37.222 | 180 | 103 | 4 | 121 | 300 | 75 | 244 | 9.68e-31 | 116 |
| Msa0240130 | MtrunA17_Chr1g0202341 | 44.037 | 109 | 60 | 1 | 120 | 228 | 49 | 156 | 6.61e-24 | 102 |
| Msa0240130 | MtrunA17_Chr5g0448761 | 44.737 | 114 | 61 | 2 | 120 | 231 | 58 | 171 | 1.90e-20 | 92.0 |
| Msa0240130 | MtrunA17_Chr2g0287061 | 35.374 | 147 | 72 | 3 | 119 | 259 | 26 | 155 | 9.30e-19 | 87.0 |
| Msa0240130 | MtrunA17_Chr2g0287061 | 33.019 | 106 | 56 | 1 | 120 | 225 | 181 | 271 | 1.66e-14 | 74.3 |
| Msa0240130 | MtrunA17_Chr6g0458391 | 35.115 | 131 | 83 | 1 | 122 | 252 | 225 | 353 | 7.59e-18 | 84.3 |
| Msa0240130 | MtrunA17_Chr6g0458391 | 29.012 | 162 | 105 | 3 | 101 | 256 | 65 | 222 | 1.03e-12 | 68.6 |
| Msa0240130 | MtrunA17_Chr5g0440451 | 36.036 | 111 | 56 | 1 | 121 | 231 | 42 | 137 | 2.34e-17 | 82.8 |
| Msa0240130 | MtrunA17_Chr3g0080351 | 32.520 | 123 | 72 | 1 | 120 | 231 | 74 | 196 | 7.38e-16 | 78.2 |
| Msa0240130 | MtrunA17_Chr2g0329031 | 33.663 | 101 | 62 | 1 | 126 | 226 | 18 | 113 | 3.34e-13 | 70.1 |
| Msa0240130 | MtrunA17_Chr1g0203721 | 37.143 | 105 | 64 | 1 | 124 | 228 | 65 | 167 | 5.70e-13 | 69.7 |
| Msa0240130 | MtrunA17_Chr3g0082121 | 37.273 | 110 | 64 | 3 | 122 | 229 | 43 | 149 | 8.83e-13 | 68.9 |
| Msa0240130 | MtrunA17_Chr2g0291591 | 30.303 | 132 | 85 | 2 | 94 | 225 | 37 | 161 | 1.17e-12 | 68.6 |
| Msa0240130 | MtrunA17_Chr1g0203051 | 28.877 | 187 | 118 | 6 | 49 | 226 | 3 | 183 | 1.35e-11 | 65.1 |
| Msa0240130 | MtrunA17_Chr2g0291581 | 32.075 | 106 | 62 | 2 | 122 | 225 | 71 | 168 | 1.77e-11 | 65.1 |
| Msa0240130 | MtrunA17_Chr2g0294841 | 33.813 | 139 | 83 | 5 | 117 | 248 | 40 | 176 | 2.22e-11 | 64.7 |
| Msa0240130 | MtrunA17_Chr1g0171741 | 34.951 | 103 | 64 | 3 | 126 | 227 | 137 | 237 | 7.88e-11 | 61.6 |
| Msa0240130 | MtrunA17_Chr5g0401121 | 33.333 | 126 | 74 | 4 | 109 | 230 | 43 | 162 | 8.63e-11 | 59.7 |
| Msa0240130 | MtrunA17_Chr2g0290391 | 33.065 | 124 | 66 | 5 | 117 | 231 | 46 | 161 | 9.43e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240130 | AT2G43280.1 | 43.077 | 195 | 89 | 6 | 115 | 304 | 15 | 192 | 3.97e-41 | 142 |
| Msa0240130 | AT3G07500.1 | 39.362 | 188 | 107 | 3 | 117 | 304 | 28 | 208 | 2.61e-38 | 135 |
| Msa0240130 | AT2G43280.2 | 44.509 | 173 | 74 | 6 | 137 | 304 | 2 | 157 | 6.27e-37 | 130 |
| Msa0240130 | AT3G59470.3 | 35.135 | 222 | 125 | 6 | 92 | 305 | 32 | 242 | 2.71e-34 | 125 |
| Msa0240130 | AT3G59470.1 | 35.135 | 222 | 125 | 6 | 92 | 305 | 32 | 242 | 2.71e-34 | 125 |
| Msa0240130 | AT3G59470.2 | 35.135 | 222 | 125 | 6 | 92 | 305 | 44 | 254 | 2.84e-34 | 126 |
| Msa0240130 | AT4G12850.1 | 34.783 | 184 | 104 | 4 | 121 | 304 | 10 | 177 | 1.65e-32 | 119 |
| Msa0240130 | AT4G38180.1 | 38.251 | 183 | 103 | 3 | 58 | 231 | 2 | 183 | 2.86e-25 | 106 |
| Msa0240130 | AT4G12850.2 | 39.048 | 105 | 59 | 1 | 121 | 225 | 10 | 109 | 5.46e-22 | 90.1 |
| Msa0240130 | AT4G12850.4 | 39.048 | 105 | 59 | 1 | 121 | 225 | 10 | 109 | 9.91e-22 | 89.7 |
| Msa0240130 | AT5G18960.2 | 41.071 | 112 | 51 | 1 | 120 | 231 | 41 | 137 | 7.22e-21 | 93.6 |
| Msa0240130 | AT5G18960.2 | 33.884 | 121 | 64 | 2 | 105 | 225 | 195 | 299 | 3.30e-15 | 76.6 |
| Msa0240130 | AT5G18960.1 | 41.071 | 112 | 51 | 1 | 120 | 231 | 41 | 137 | 7.22e-21 | 93.6 |
| Msa0240130 | AT5G18960.1 | 33.884 | 121 | 64 | 2 | 105 | 225 | 195 | 299 | 3.30e-15 | 76.6 |
| Msa0240130 | AT3G06250.2 | 41.509 | 106 | 47 | 1 | 120 | 225 | 26 | 116 | 6.52e-20 | 90.9 |
| Msa0240130 | AT3G06250.2 | 36.066 | 122 | 59 | 2 | 104 | 225 | 176 | 278 | 1.65e-16 | 80.5 |
| Msa0240130 | AT3G06250.1 | 41.509 | 106 | 47 | 1 | 120 | 225 | 26 | 116 | 6.52e-20 | 90.9 |
| Msa0240130 | AT3G06250.1 | 36.066 | 122 | 59 | 2 | 104 | 225 | 176 | 278 | 1.65e-16 | 80.5 |
| Msa0240130 | AT3G06250.3 | 41.509 | 106 | 47 | 1 | 120 | 225 | 26 | 116 | 6.52e-20 | 90.9 |
| Msa0240130 | AT3G06250.3 | 36.066 | 122 | 59 | 2 | 104 | 225 | 176 | 278 | 1.65e-16 | 80.5 |
| Msa0240130 | AT2G27110.2 | 34.483 | 145 | 77 | 3 | 84 | 227 | 10 | 137 | 6.81e-15 | 75.9 |
| Msa0240130 | AT2G27110.1 | 34.483 | 145 | 77 | 3 | 84 | 227 | 10 | 137 | 6.81e-15 | 75.9 |
| Msa0240130 | AT3G22170.2 | 31.707 | 123 | 73 | 1 | 120 | 231 | 68 | 190 | 1.08e-14 | 75.1 |
| Msa0240130 | AT3G22170.1 | 31.707 | 123 | 73 | 1 | 120 | 231 | 68 | 190 | 1.08e-14 | 75.1 |
| Msa0240130 | AT2G32250.5 | 34.653 | 101 | 61 | 1 | 125 | 225 | 41 | 136 | 1.53e-13 | 71.6 |
| Msa0240130 | AT2G32250.2 | 34.653 | 101 | 61 | 1 | 125 | 225 | 41 | 136 | 1.69e-13 | 71.6 |
| Msa0240130 | AT2G32250.4 | 34.653 | 101 | 61 | 1 | 125 | 225 | 41 | 136 | 1.69e-13 | 71.6 |
| Msa0240130 | AT2G32250.6 | 34.653 | 101 | 61 | 1 | 125 | 225 | 41 | 136 | 1.72e-13 | 71.6 |
| Msa0240130 | AT2G32250.1 | 34.653 | 101 | 61 | 1 | 125 | 225 | 41 | 136 | 1.72e-13 | 71.6 |
| Msa0240130 | AT2G32250.3 | 34.653 | 101 | 61 | 1 | 125 | 225 | 41 | 136 | 1.72e-13 | 71.6 |
| Msa0240130 | AT4G19990.3 | 31.405 | 121 | 72 | 1 | 118 | 227 | 17 | 137 | 6.56e-13 | 69.7 |
| Msa0240130 | AT4G19990.4 | 31.405 | 121 | 72 | 1 | 118 | 227 | 17 | 137 | 6.56e-13 | 69.7 |
| Msa0240130 | AT4G19990.7 | 31.405 | 121 | 72 | 1 | 118 | 227 | 31 | 151 | 7.10e-13 | 69.7 |
| Msa0240130 | AT4G19990.5 | 31.405 | 121 | 72 | 1 | 118 | 227 | 17 | 137 | 7.25e-13 | 69.7 |
| Msa0240130 | AT4G19990.6 | 31.405 | 121 | 72 | 1 | 118 | 227 | 17 | 137 | 9.12e-13 | 69.3 |
| Msa0240130 | AT4G19990.2 | 31.405 | 121 | 72 | 1 | 118 | 227 | 17 | 137 | 9.12e-13 | 69.3 |
| Msa0240130 | AT2G32250.8 | 34.000 | 100 | 61 | 1 | 126 | 225 | 1 | 95 | 1.27e-12 | 68.9 |
| Msa0240130 | AT2G32250.7 | 34.000 | 100 | 61 | 1 | 126 | 225 | 1 | 95 | 1.37e-12 | 68.9 |
| Msa0240130 | AT1G76320.3 | 30.159 | 126 | 82 | 2 | 126 | 251 | 1 | 120 | 2.70e-12 | 67.8 |
| Msa0240130 | AT1G76320.1 | 30.159 | 126 | 82 | 2 | 126 | 251 | 1 | 120 | 2.79e-12 | 67.8 |
| Msa0240130 | AT1G76320.4 | 30.159 | 126 | 82 | 2 | 126 | 251 | 1 | 120 | 2.79e-12 | 67.8 |
| Msa0240130 | AT1G76320.2 | 30.159 | 126 | 82 | 2 | 126 | 251 | 1 | 120 | 2.92e-12 | 67.8 |
| Msa0240130 | AT1G80010.1 | 33.654 | 104 | 63 | 1 | 122 | 225 | 95 | 192 | 4.94e-12 | 67.0 |
| Msa0240130 | AT4G15090.1 | 31.776 | 107 | 71 | 1 | 120 | 226 | 49 | 153 | 5.72e-12 | 67.0 |
| Msa0240130 | AT4G15090.5 | 31.776 | 107 | 71 | 1 | 120 | 226 | 49 | 153 | 5.72e-12 | 67.0 |
| Msa0240130 | AT4G15090.3 | 31.776 | 107 | 71 | 1 | 120 | 226 | 49 | 153 | 5.72e-12 | 67.0 |
| Msa0240130 | AT4G15090.2 | 31.776 | 107 | 71 | 1 | 120 | 226 | 49 | 153 | 5.72e-12 | 67.0 |
| Msa0240130 | AT4G15090.4 | 31.776 | 107 | 71 | 1 | 120 | 226 | 49 | 153 | 5.72e-12 | 67.0 |
| Msa0240130 | AT1G52520.1 | 32.692 | 104 | 64 | 1 | 122 | 225 | 85 | 182 | 1.39e-11 | 65.9 |
Find 106 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTGTTGCCAGACATTC+TGG | 0.240332 | 2_2:-14920357 | Msa0240130:three_prime_UTR |
| CATGATAAGGTTGGCTTTAC+GGG | 0.249268 | 2_2:-14921488 | Msa0240130:CDS |
| TGTATGTTCCTTCACAAATT+TGG | 0.258446 | 2_2:+14921444 | None:intergenic |
| TGTTGCTGGGTTTCTCTACT+TGG | 0.271829 | 2_2:-14924095 | None:intergenic |
| CCATGATAAGGTTGGCTTTA+CGG | 0.274945 | 2_2:-14921489 | Msa0240130:CDS |
| TCTCGGGTGGCTGGTGGAGG+AGG | 0.303392 | 2_2:+14921523 | None:intergenic |
| TCAGGCAGCATATAGTATAT+TGG | 0.304154 | 2_2:-14920239 | Msa0240130:three_prime_UTR |
| TTCTGGTGTGTATCATGTTC+GGG | 0.310325 | 2_2:-14920206 | Msa0240130:three_prime_UTR |
| CCTCAATCTCTCTGATATTT+CGG | 0.319830 | 2_2:+14920424 | None:intergenic |
| CTATTCGCTTTGCTTAAATC+TGG | 0.323238 | 2_2:-14923743 | Msa0240130:CDS |
| AAATACAATTCTGAACGATT+TGG | 0.340360 | 2_2:-14920490 | Msa0240130:CDS |
| TTACTCGCGAACGGCGGTTA+TGG | 0.347299 | 2_2:+14921632 | None:intergenic |
| AATGTAATTCTATCAACATT+TGG | 0.351343 | 2_2:-14920297 | Msa0240130:three_prime_UTR |
| CGAGTAAATAACAAGCTAAT+TGG | 0.351629 | 2_2:-14921616 | Msa0240130:CDS |
| CTGGGTTTCTCTACTTGGTA+TGG | 0.352595 | 2_2:-14924090 | Msa0240130:five_prime_UTR |
| CAGGCAGCATATAGTATATT+GGG | 0.358188 | 2_2:-14920238 | Msa0240130:three_prime_UTR |
| TGCTCACTCACTTGCTGTAT+TGG | 0.363115 | 2_2:+14920052 | None:intergenic |
| TTTCTGGTGTGTATCATGTT+CGG | 0.364987 | 2_2:-14920207 | Msa0240130:three_prime_UTR |
| ATGCAAGGATACAATGGATA+TGG | 0.368107 | 2_2:+14920118 | None:intergenic |
| TCATGGCTTGACAACCTTCT+CGG | 0.378795 | 2_2:+14921506 | None:intergenic |
| GAAAACTTCAAATTGCGAAT+AGG | 0.381872 | 2_2:+14920321 | None:intergenic |
| CCTTCTCGGGTGGCTGGTGG+AGG | 0.389419 | 2_2:+14921520 | None:intergenic |
| GACCGTTTGTGCAACTGAAT+GGG | 0.392348 | 2_2:+14923971 | None:intergenic |
| GAAGTTCCATGGCGAGGATC+CGG | 0.395395 | 2_2:-14921400 | Msa0240130:CDS |
| TTCAACAAGAGCAGCATGTT+AGG | 0.401213 | 2_2:+14920162 | None:intergenic |
| CTCACTAACCAAGTGCTTCC+CGG | 0.404686 | 2_2:+14921381 | None:intergenic |
| CATGGCTTGACAACCTTCTC+GGG | 0.412731 | 2_2:+14921507 | None:intergenic |
| AAGTATCTCACCAGAATGTC+TGG | 0.414991 | 2_2:+14920347 | None:intergenic |
| AGTGGTCATATTAAAACTTC+AGG | 0.420723 | 2_2:-14920257 | Msa0240130:three_prime_UTR |
| TGACAACCTTCTCGGGTGGC+TGG | 0.424878 | 2_2:+14921514 | None:intergenic |
| TCCTCGCCATGGAACTTCAC+TGG | 0.443266 | 2_2:+14921405 | None:intergenic |
| AGGATGATGGATCACCAATC+TGG | 0.443741 | 2_2:-14921907 | Msa0240130:CDS |
| GACACATTAGAACCATTCAT+AGG | 0.454194 | 2_2:-14921736 | Msa0240130:CDS |
| TGTCACAGGACGAGAAAGAT+AGG | 0.454669 | 2_2:-14920593 | Msa0240130:intron |
| AATCAAATCCCTGGCCAGAT+TGG | 0.455766 | 2_2:+14921893 | None:intergenic |
| CGAACAACCTGTAGCAGATT+CGG | 0.459103 | 2_2:-14921758 | Msa0240130:CDS |
| CCGAAATATCAGAGAGATTG+AGG | 0.462386 | 2_2:-14920424 | Msa0240130:CDS |
| CTCGGGTGGCTGGTGGAGGA+GGG | 0.466145 | 2_2:+14921524 | None:intergenic |
| ATCAACATTTGGCTTGAAGT+TGG | 0.469414 | 2_2:-14920286 | Msa0240130:three_prime_UTR |
| AAATGGTTTACCTATTATCC+AGG | 0.470951 | 2_2:+14923695 | None:intergenic |
| CTGGCAACAATGGAATATAC+TGG | 0.471446 | 2_2:+14920366 | None:intergenic |
| AATAAATCAAAATGTGCAGC+TGG | 0.482642 | 2_2:+14920076 | None:intergenic |
| GATGGATCACCAATCTGGCC+AGG | 0.492007 | 2_2:-14921902 | Msa0240130:CDS |
| CAACCTTCTCGGGTGGCTGG+TGG | 0.497367 | 2_2:+14921517 | None:intergenic |
| AGGTTGGCTTTACGGGATGA+AGG | 0.498475 | 2_2:-14921481 | Msa0240130:CDS |
| AGACATTCTGGTGAGATACT+TGG | 0.500017 | 2_2:-14920345 | Msa0240130:three_prime_UTR |
| TATTATCCAGGTTGAAAACT+AGG | 0.501348 | 2_2:+14923707 | None:intergenic |
| TGACCGTTTGTGCAACTGAA+TGG | 0.502026 | 2_2:+14923970 | None:intergenic |
| AAGTTCCATGGCGAGGATCC+GGG | 0.502060 | 2_2:-14921399 | Msa0240130:CDS |
| TCAAATTACAACAAAGGTGA+AGG | 0.504520 | 2_2:+14924015 | None:intergenic |
| AAGGTTGTCAAGCCATGATA+AGG | 0.504631 | 2_2:-14921501 | Msa0240130:CDS |
| ACGAAAGGCAAAAGTACAAA+AGG | 0.509895 | 2_2:-14920539 | Msa0240130:CDS |
| CTTTACGGGATGAAGGGAAG+TGG | 0.510166 | 2_2:-14921474 | Msa0240130:CDS |
| ACCGTTTGTGCAACTGAATG+GGG | 0.512657 | 2_2:+14923972 | None:intergenic |
| CCTCGCCATGGAACTTCACT+GGG | 0.518653 | 2_2:+14921406 | None:intergenic |
| AATGTGTCCGAATCTGCTAC+AGG | 0.521451 | 2_2:+14921751 | None:intergenic |
| AACAATTTAGAATTATGTAC+AGG | 0.522470 | 2_2:-14921799 | Msa0240130:CDS |
| CGCTCGAGTTGCACAACGAA+AGG | 0.523644 | 2_2:-14920554 | Msa0240130:CDS |
| AAGATGAAGTGTAGAAGCTC+CGG | 0.523959 | 2_2:+14923947 | None:intergenic |
| CCGTAAAGCCAACCTTATCA+TGG | 0.524530 | 2_2:+14921489 | None:intergenic |
| CTTCTGCTATAATAGGATGA+TGG | 0.528986 | 2_2:-14921920 | Msa0240130:intron |
| AATGGCCATGGTAGGAGGAT+AGG | 0.534923 | 2_2:-14921673 | Msa0240130:CDS |
| GGTATGGAGTAGTTCTTCCA+TGG | 0.537659 | 2_2:-14924074 | Msa0240130:exon |
| ACCAGAATGTCTGGCAACAA+TGG | 0.538189 | 2_2:+14920356 | None:intergenic |
| GCGAGGATCCGGGAAGCACT+TGG | 0.541373 | 2_2:-14921389 | Msa0240130:CDS |
| CCTCCACCAGCCACCCGAGA+AGG | 0.543028 | 2_2:-14921520 | Msa0240130:CDS |
| AAGGTGAAGGGAATAAGAGA+AGG | 0.553305 | 2_2:+14924028 | None:intergenic |
| CAATTAATGCAAGGATACAA+TGG | 0.556643 | 2_2:+14920112 | None:intergenic |
| TGCTTCCCGGATCCTCGCCA+TGG | 0.557183 | 2_2:+14921394 | None:intergenic |
| TCAGTTGCACAAACGGTCAC+CGG | 0.558306 | 2_2:-14923966 | Msa0240130:CDS |
| TTTACGGGATGAAGGGAAGT+GGG | 0.561477 | 2_2:-14921473 | Msa0240130:CDS |
| GGCCAGGGATTTGATTCAGA+TGG | 0.568231 | 2_2:-14921886 | Msa0240130:CDS |
| GGTTGGCTTTACGGGATGAA+GGG | 0.571058 | 2_2:-14921480 | Msa0240130:CDS |
| TAGGCATGCAGTTCAACTCA+AGG | 0.572467 | 2_2:-14921717 | Msa0240130:CDS |
| TCTACAATGGCCATGGTAGG+AGG | 0.572483 | 2_2:-14921678 | Msa0240130:CDS |
| CGGAGTCACTGCACTAACCA+TGG | 0.573921 | 2_2:+14924057 | None:intergenic |
| GGAATAAGAGAAGGGTTCCT+CGG | 0.579433 | 2_2:+14924037 | None:intergenic |
| TACCATCTGAATCAAATCCC+TGG | 0.581654 | 2_2:+14921884 | None:intergenic |
| GCTTGAAGTTGGTTGTGTAG+TGG | 0.583684 | 2_2:-14920275 | Msa0240130:three_prime_UTR |
| GCTTGTTATTTACTCGCGAA+CGG | 0.583871 | 2_2:+14921623 | None:intergenic |
| GGAGGATAGGATTTACAGTA+CGG | 0.583900 | 2_2:-14921660 | Msa0240130:CDS |
| CAAATTACAACAAAGGTGAA+GGG | 0.591945 | 2_2:+14924016 | None:intergenic |
| ATTCGATTACAATTAATGCA+AGG | 0.594392 | 2_2:+14920103 | None:intergenic |
| AGAGAATTCTACAATGGCCA+TGG | 0.595180 | 2_2:-14921685 | Msa0240130:CDS |
| TTGTCAAGCCATGATAAGGT+TGG | 0.599156 | 2_2:-14921497 | Msa0240130:CDS |
| CCCAGTGAAGTTCCATGGCG+AGG | 0.602502 | 2_2:-14921406 | Msa0240130:CDS |
| TAAATCCTATCCTCCTACCA+TGG | 0.603101 | 2_2:+14921668 | None:intergenic |
| GGTTGTTCAAATTACAACAA+AGG | 0.604368 | 2_2:+14924009 | None:intergenic |
| TTGAACTGCATGCCTATGAA+TGG | 0.604946 | 2_2:+14921724 | None:intergenic |
| TGAGTCCCAGTGAAGTTCCA+TGG | 0.607822 | 2_2:-14921411 | Msa0240130:CDS |
| ATGGATCACCAATCTGGCCA+GGG | 0.613451 | 2_2:-14921901 | Msa0240130:CDS |
| AATTCTACAATGGCCATGGT+AGG | 0.613869 | 2_2:-14921681 | Msa0240130:CDS |
| CCGTTTGTGCAACTGAATGG+GGG | 0.615514 | 2_2:+14923973 | None:intergenic |
| GGCTTGACAACCTTCTCGGG+TGG | 0.617601 | 2_2:+14921510 | None:intergenic |
| CGTTTGTGCAACTGAATGGG+GGG | 0.620782 | 2_2:+14923974 | None:intergenic |
| GGTTGTCACCAAATTTGTGA+AGG | 0.624088 | 2_2:-14921452 | Msa0240130:CDS |
| CGGGAAGCACTTGGTTAGTG+AGG | 0.627824 | 2_2:-14921380 | Msa0240130:intron |
| AATGGATATGGTTAGTCACA+AGG | 0.628549 | 2_2:+14920130 | None:intergenic |
| ATGGATATGGTTAGTCACAA+GGG | 0.630431 | 2_2:+14920131 | None:intergenic |
| AGGCATGCAGTTCAACTCAA+GGG | 0.634792 | 2_2:-14921716 | Msa0240130:CDS |
| TGTTATTTACTCGCGAACGG+CGG | 0.635708 | 2_2:+14921626 | None:intergenic |
| AGGTGAAGGGAATAAGAGAA+GGG | 0.642031 | 2_2:+14924029 | None:intergenic |
| GCAACTCGAGCGATAGCTCA+CGG | 0.642945 | 2_2:+14920565 | None:intergenic |
| GAAGCAAGAGAATTCTACAA+TGG | 0.657489 | 2_2:-14921691 | Msa0240130:CDS |
| TGGTTAGTGCAGTGACTCCG+AGG | 0.685287 | 2_2:-14924054 | Msa0240130:CDS |
| CATGCAGTTCAACTCAAGGG+AGG | 0.700261 | 2_2:-14921713 | Msa0240130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCATTTATTCTTTTT+TGG | - | chr2_2:14921860-14921879 | Msa0240130:CDS | 10.0% |
| !! | ATTAATGTTTATGATTATTA+TGG | - | chr2_2:14921896-14921915 | Msa0240130:CDS | 10.0% |
| !! | TTAATGTTTATGATTATTAT+GGG | - | chr2_2:14921897-14921916 | Msa0240130:CDS | 10.0% |
| !! | ATATAAATATTTATGATCAA+TGG | + | chr2_2:14922020-14922039 | None:intergenic | 10.0% |
| !! | AATATTTATATTTCCAAACA+AGG | - | chr2_2:14922029-14922048 | Msa0240130:intron | 15.0% |
| !! | TGTAAGTAATAACAAACAAA+GGG | - | chr2_2:14920223-14920242 | Msa0240130:three_prime_UTR | 20.0% |
| !! | AAGTTGGAATATTGAAAAAT+GGG | + | chr2_2:14920277-14920296 | None:intergenic | 20.0% |
| !! | AAAGTTGGAATATTGAAAAA+TGG | + | chr2_2:14920278-14920297 | None:intergenic | 20.0% |
| !!! | GAAACAAATTAATTCTGAAA+TGG | + | chr2_2:14920489-14920508 | None:intergenic | 20.0% |
| !!! | AATTAATTTGTTTCTTTGTC+CGG | - | chr2_2:14920495-14920514 | Msa0240130:CDS | 20.0% |
| !! | AACAACTAATTAGTAACATT+TGG | + | chr2_2:14920649-14920668 | None:intergenic | 20.0% |
| !! | AATTAGGATAGTATTTATTG+CGG | - | chr2_2:14921013-14921032 | Msa0240130:intron | 20.0% |
| !! | GATTGTATTTGTAATTGAAT+AGG | - | chr2_2:14921721-14921740 | Msa0240130:CDS | 20.0% |
| !!! | AATAGGAAAGAATTTTTGTT+GGG | - | chr2_2:14921738-14921757 | Msa0240130:CDS | 20.0% |
| !!! | AATCATTTATTCTTTTTTGG+TGG | - | chr2_2:14921863-14921882 | Msa0240130:CDS | 20.0% |
| !! | AGATATTCACATATTCTTAA+TGG | + | chr2_2:14921925-14921944 | None:intergenic | 20.0% |
| !!! | AACAATTTAGAATTATGTAC+AGG | - | chr2_2:14922343-14922362 | Msa0240130:intron | 20.0% |
| !! | TATCAAAATACAGATTCTTA+TGG | - | chr2_2:14923060-14923079 | Msa0240130:intron | 20.0% |
| !!! | TTTTAGAATATCTTATCTCT+GGG | - | chr2_2:14923086-14923105 | Msa0240130:intron | 20.0% |
| !! | GACTATATTATGTATATTCT+TGG | + | chr2_2:14923305-14923324 | None:intergenic | 20.0% |
| !! | AATGTAATTCTATCAACATT+TGG | - | chr2_2:14923845-14923864 | Msa0240130:intron | 20.0% |
| ! | GTGTAAGTAATAACAAACAA+AGG | - | chr2_2:14920222-14920241 | Msa0240130:three_prime_UTR | 25.0% |
| ! | TTTCTGAACTCAATTGAAAT+GGG | - | chr2_2:14920295-14920314 | Msa0240130:three_prime_UTR | 25.0% |
| !! | GAGTTCAATTATACATTTTC+CGG | + | chr2_2:14920517-14920536 | None:intergenic | 25.0% |
| ! | ATACATGTCCAAATTACTTA+AGG | + | chr2_2:14921058-14921077 | None:intergenic | 25.0% |
| ! | TTAAGTAATTTGGACATGTA+TGG | - | chr2_2:14921057-14921076 | Msa0240130:intron | 25.0% |
| !! | GAATAGGAAAGAATTTTTGT+TGG | - | chr2_2:14921737-14921756 | Msa0240130:CDS | 25.0% |
| ! | TATCTTGGACATATTAGATT+TGG | - | chr2_2:14921832-14921851 | Msa0240130:CDS | 25.0% |
| ! | ATCTTGGACATATTAGATTT+GGG | - | chr2_2:14921833-14921852 | Msa0240130:CDS | 25.0% |
| !! | ATCTTTTTGCTAATAGCTTA+TGG | - | chr2_2:14921941-14921960 | Msa0240130:intron | 25.0% |
| ! | ACATTATGAATAGCACTAAA+TGG | + | chr2_2:14921991-14922010 | None:intergenic | 25.0% |
| ! | GAAACAGGAAAATAAAAAAG+AGG | - | chr2_2:14922064-14922083 | Msa0240130:intron | 25.0% |
| ! | TAAACTATAAAGTGCACTAT+TGG | + | chr2_2:14922797-14922816 | None:intergenic | 25.0% |
| !!! | TTCTAGAATACCTTATCTAT+GGG | - | chr2_2:14922989-14923008 | Msa0240130:intron | 25.0% |
| !!! | CTTTTAGAATATCTTATCTC+TGG | - | chr2_2:14923085-14923104 | Msa0240130:intron | 25.0% |
| !!! | GAAAGGGATTTTTTAGAAAA+GGG | + | chr2_2:14923156-14923175 | None:intergenic | 25.0% |
| !!! | TGTTTGAGATTTTTTTTAGG+GGG | + | chr2_2:14923362-14923381 | None:intergenic | 25.0% |
| !!! | CTGTTTGAGATTTTTTTTAG+GGG | + | chr2_2:14923363-14923382 | None:intergenic | 25.0% |
| !!! | CCTGTTTGAGATTTTTTTTA+GGG | + | chr2_2:14923364-14923383 | None:intergenic | 25.0% |
| !!! | TCCTGTTTGAGATTTTTTTT+AGG | + | chr2_2:14923365-14923384 | None:intergenic | 25.0% |
| !! | AGGATTGTATTAACTCTTTT+AGG | - | chr2_2:14923381-14923400 | Msa0240130:intron | 25.0% |
| !! | GGATTGTATTAACTCTTTTA+GGG | - | chr2_2:14923382-14923401 | Msa0240130:intron | 25.0% |
| ! | AAATACAATTCTGAACGATT+TGG | - | chr2_2:14923652-14923671 | Msa0240130:intron | 25.0% |
| ! | GAAGAAAAATCAGATTTAGA+TGG | - | chr2_2:14923740-14923759 | Msa0240130:CDS | 25.0% |
| !! | ATATTGGGAAATTCATTTTC+TGG | - | chr2_2:14923919-14923938 | Msa0240130:intron | 25.0% |
| ! | ATTCGATTACAATTAATGCA+AGG | + | chr2_2:14924042-14924061 | None:intergenic | 25.0% |
| CAAATTACAACAAAGGTGAA+GGG | + | chr2_2:14920129-14920148 | None:intergenic | 30.0% | |
| TCAAATTACAACAAAGGTGA+AGG | + | chr2_2:14920130-14920149 | None:intergenic | 30.0% | |
| GGTTGTTCAAATTACAACAA+AGG | + | chr2_2:14920136-14920155 | None:intergenic | 30.0% | |
| TGGAATATTGAAAAATGGGA+GGG | + | chr2_2:14920273-14920292 | None:intergenic | 30.0% | |
| TTGGAATATTGAAAAATGGG+AGG | + | chr2_2:14920274-14920293 | None:intergenic | 30.0% | |
| TTCAATTGAGTTCAGAAAGT+TGG | + | chr2_2:14920293-14920312 | None:intergenic | 30.0% | |
| CTTTCTGAACTCAATTGAAA+TGG | - | chr2_2:14920294-14920313 | Msa0240130:three_prime_UTR | 30.0% | |
| ! | TATTATCCAGGTTGAAAACT+AGG | + | chr2_2:14920438-14920457 | None:intergenic | 30.0% |
| ! | TAGTTTTCAACCTGGATAAT+AGG | - | chr2_2:14920437-14920456 | Msa0240130:CDS | 30.0% |
| AAATGGTTTACCTATTATCC+AGG | + | chr2_2:14920450-14920469 | None:intergenic | 30.0% | |
| GAAGAAGAAGATGAAGAAAA+TGG | + | chr2_2:14920467-14920486 | None:intergenic | 30.0% | |
| TACATAACATGGATTTGAGT+GGG | - | chr2_2:14920743-14920762 | Msa0240130:intron | 30.0% | |
| AAATTGATTGCATAACTTGG+AGG | + | chr2_2:14920826-14920845 | None:intergenic | 30.0% | |
| GGTAAATTGATTGCATAACT+TGG | + | chr2_2:14920829-14920848 | None:intergenic | 30.0% | |
| AAAAGACTTGTGATGTTGTA+TGG | - | chr2_2:14920860-14920879 | Msa0240130:intron | 30.0% | |
| GATGCATTAGCAAGAAAATT+AGG | - | chr2_2:14920997-14921016 | Msa0240130:intron | 30.0% | |
| GAATTTCGCCTTAAGTAATT+TGG | - | chr2_2:14921047-14921066 | Msa0240130:intron | 30.0% | |
| AGGTACATTTAGACCAATAT+TGG | - | chr2_2:14921149-14921168 | Msa0240130:intron | 30.0% | |
| !! | ATTTAGACCAATATTGGCTT+TGG | - | chr2_2:14921155-14921174 | Msa0240130:intron | 30.0% |
| TAAAGTTGAGTAAGATAGCA+TGG | + | chr2_2:14921224-14921243 | None:intergenic | 30.0% | |
| TCAACTTTATCTTGAGCTTT+GGG | - | chr2_2:14921235-14921254 | Msa0240130:intron | 30.0% | |
| !!! | TTGGAATATGGTTTTGACAA+GGG | + | chr2_2:14921380-14921399 | None:intergenic | 30.0% |
| !!! | TTTGGAATATGGTTTTGACA+AGG | + | chr2_2:14921381-14921400 | None:intergenic | 30.0% |
| ! | AGACAGAAATGTTTGGAATA+TGG | + | chr2_2:14921392-14921411 | None:intergenic | 30.0% |
| TCGAAATAGACAGAAATGTT+TGG | + | chr2_2:14921399-14921418 | None:intergenic | 30.0% | |
| GAACCAATATCATAGACTTA+AGG | - | chr2_2:14921681-14921700 | Msa0240130:CDS | 30.0% | |
| !!! | AAATGTTTTTTGATAGGCGA+AGG | + | chr2_2:14921793-14921812 | None:intergenic | 30.0% |
| TTCGCCTATCAAAAAACATT+TGG | - | chr2_2:14921792-14921811 | Msa0240130:CDS | 30.0% | |
| !!! | AGCACCAAATGTTTTTTGAT+AGG | + | chr2_2:14921799-14921818 | None:intergenic | 30.0% |
| TTTGCTAATAGCTTATGGAT+AGG | - | chr2_2:14921946-14921965 | Msa0240130:intron | 30.0% | |
| ! | TTAGTGCTATTCATAATGTG+AGG | - | chr2_2:14921992-14922011 | Msa0240130:intron | 30.0% |
| ! | CTTTTGTTAATCTCCTTGTT+TGG | + | chr2_2:14922045-14922064 | None:intergenic | 30.0% |
| AGGAGATTAACAAAAGAAAC+AGG | - | chr2_2:14922049-14922068 | Msa0240130:intron | 30.0% | |
| TTTCAGCTGTTAGTAATTAC+TGG | - | chr2_2:14922125-14922144 | Msa0240130:intron | 30.0% | |
| TTGTGTACTTCTGCTATAAT+AGG | - | chr2_2:14922215-14922234 | Msa0240130:intron | 30.0% | |
| CGAGTAAATAACAAGCTAAT+TGG | - | chr2_2:14922526-14922545 | Msa0240130:intron | 30.0% | |
| !! | GATTTTGTTTGCTCAAAAGA+AGG | - | chr2_2:14922553-14922572 | Msa0240130:intron | 30.0% |
| TGTATGTTCCTTCACAAATT+TGG | + | chr2_2:14922701-14922720 | None:intergenic | 30.0% | |
| TATGTATACCTGATCAAACT+TGG | - | chr2_2:14922828-14922847 | Msa0240130:intron | 30.0% | |
| TAGCAAAATACAGATTCTCA+TGG | - | chr2_2:14922963-14922982 | Msa0240130:intron | 30.0% | |
| !! | CTTCTAGAATACCTTATCTA+TGG | - | chr2_2:14922988-14923007 | Msa0240130:intron | 30.0% |
| GAAAATTGTGAGTGAAAGTT+TGG | + | chr2_2:14923114-14923133 | None:intergenic | 30.0% | |
| !!! | ATTTTTTAGAAAAGGGTGTG+TGG | + | chr2_2:14923149-14923168 | None:intergenic | 30.0% |
| !!! | GGAAAGGGATTTTTTAGAAA+AGG | + | chr2_2:14923157-14923176 | None:intergenic | 30.0% |
| ! | TAGCAAGAGAATTTAAGACA+TGG | + | chr2_2:14923242-14923261 | None:intergenic | 30.0% |
| ! | ATTCTTGGTGTAATATCGAT+AGG | + | chr2_2:14923290-14923309 | None:intergenic | 30.0% |
| CCCTAAAAAAAATCTCAAAC+AGG | - | chr2_2:14923361-14923380 | Msa0240130:intron | 30.0% | |
| ATTAAAAGTCCCATCTCAAT+CGG | - | chr2_2:14923406-14923425 | Msa0240130:intron | 30.0% | |
| GTATAGTTCAGTTCTTTGTT+AGG | - | chr2_2:14923466-14923485 | Msa0240130:intron | 30.0% | |
| AAAAAGGAACAAACAGAACA+TGG | + | chr2_2:14923501-14923520 | None:intergenic | 30.0% | |
| ! | ACAAGTTTGAGGTAGAAAAA+AGG | + | chr2_2:14923517-14923536 | None:intergenic | 30.0% |
| AAATCAACAAGACAAGTTTG+AGG | + | chr2_2:14923528-14923547 | None:intergenic | 30.0% | |
| AAAAATCAGATTTAGATGGC+AGG | - | chr2_2:14923744-14923763 | Msa0240130:CDS | 30.0% | |
| GAAAACTTCAAATTGCGAAT+AGG | + | chr2_2:14923824-14923843 | None:intergenic | 30.0% | |
| AGTGGTCATATTAAAACTTC+AGG | - | chr2_2:14923885-14923904 | Msa0240130:intron | 30.0% | |
| CAATTAATGCAAGGATACAA+TGG | + | chr2_2:14924033-14924052 | None:intergenic | 30.0% | |
| AATAAATCAAAATGTGCAGC+TGG | + | chr2_2:14924069-14924088 | None:intergenic | 30.0% | |
| TTAACATACTACATGCTTGC+AGG | - | chr2_2:14920371-14920390 | Msa0240130:three_prime_UTR | 35.0% | |
| CTATTCGCTTTGCTTAAATC+TGG | - | chr2_2:14920399-14920418 | Msa0240130:CDS | 35.0% | |
| TCAAACCAACCTACATAACA+TGG | - | chr2_2:14920732-14920751 | Msa0240130:intron | 35.0% | |
| CAAATCCATGTTATGTAGGT+TGG | + | chr2_2:14920740-14920759 | None:intergenic | 35.0% | |
| CACTCAAATCCATGTTATGT+AGG | + | chr2_2:14920744-14920763 | None:intergenic | 35.0% | |
| CTACATAACATGGATTTGAG+TGG | - | chr2_2:14920742-14920761 | Msa0240130:intron | 35.0% | |
| !! | CAAGTCTTTTTAACTACACG+CGG | + | chr2_2:14920850-14920869 | None:intergenic | 35.0% |
| GTTGTATGGAAGTGAGTATT+AGG | - | chr2_2:14920874-14920893 | Msa0240130:intron | 35.0% | |
| GGACAGGACAAAATAGTATT+AGG | - | chr2_2:14920970-14920989 | Msa0240130:intron | 35.0% | |
| ATTTGGACATGTATGGAGAT+TGG | - | chr2_2:14921064-14921083 | Msa0240130:intron | 35.0% | |
| ATATACGTAGAAGCTTCGAT+AGG | - | chr2_2:14921090-14921109 | Msa0240130:intron | 35.0% | |
| TATACGTAGAAGCTTCGATA+GGG | - | chr2_2:14921091-14921110 | Msa0240130:intron | 35.0% | |
| GAGAATCTCACAATTGTTAG+AGG | - | chr2_2:14921129-14921148 | Msa0240130:intron | 35.0% | |
| GAATGAACCAAAGCCAATAT+TGG | + | chr2_2:14921165-14921184 | None:intergenic | 35.0% | |
| CTCAACTTTATCTTGAGCTT+TGG | - | chr2_2:14921234-14921253 | Msa0240130:intron | 35.0% | |
| TAAAGAGTCATGTCTATCAC+AGG | + | chr2_2:14921492-14921511 | None:intergenic | 35.0% | |
| CATATCGTATTCTTGCCTAT+CGG | - | chr2_2:14921545-14921564 | Msa0240130:CDS | 35.0% | |
| CCACCTTAAGTCTATGATAT+TGG | + | chr2_2:14921687-14921706 | None:intergenic | 35.0% | |
| CCAATATCATAGACTTAAGG+TGG | - | chr2_2:14921684-14921703 | Msa0240130:CDS | 35.0% | |
| ! | TTTTGATAGGCGAAGGTTAA+GGG | + | chr2_2:14921786-14921805 | None:intergenic | 35.0% |
| ! | TTTTTGATAGGCGAAGGTTA+AGG | + | chr2_2:14921787-14921806 | None:intergenic | 35.0% |
| !! | CAAAAAACATTTGGTGCTGT+TGG | - | chr2_2:14921801-14921820 | Msa0240130:CDS | 35.0% |
| !! | CTGTTGGTTCTGTATTATCT+TGG | - | chr2_2:14921817-14921836 | Msa0240130:CDS | 35.0% |
| TAGCTTATGGATAGGATGAT+TGG | - | chr2_2:14921954-14921973 | Msa0240130:intron | 35.0% | |
| ACAGTTCATCAGAAAACGTA+AGG | + | chr2_2:14922172-14922191 | None:intergenic | 35.0% | |
| CTTCTGCTATAATAGGATGA+TGG | - | chr2_2:14922222-14922241 | Msa0240130:intron | 35.0% | |
| GACACATTAGAACCATTCAT+AGG | - | chr2_2:14922406-14922425 | Msa0240130:intron | 35.0% | |
| GAAGCAAGAGAATTCTACAA+TGG | - | chr2_2:14922451-14922470 | Msa0240130:intron | 35.0% | |
| !! | GTCAGTCTCACTTTTAAATC+TGG | + | chr2_2:14922854-14922873 | None:intergenic | 35.0% |
| GAAAAATGTGAGTGAAGGTT+TGG | + | chr2_2:14923017-14923036 | None:intergenic | 35.0% | |
| TTTCCACCTAAGATAGAATG+AGG | - | chr2_2:14923263-14923282 | Msa0240130:intron | 35.0% | |
| TTCCACCTAAGATAGAATGA+GGG | - | chr2_2:14923264-14923283 | Msa0240130:intron | 35.0% | |
| !!! | TTGAGATTTTTTTTAGGGGG+TGG | + | chr2_2:14923359-14923378 | None:intergenic | 35.0% |
| TTACATGCAGATGTTGGATT+AGG | - | chr2_2:14923429-14923448 | Msa0240130:intron | 35.0% | |
| ! | ACGAAAGGCAAAAGTACAAA+AGG | - | chr2_2:14923603-14923622 | Msa0240130:intron | 35.0% |
| CCTCAATCTCTCTGATATTT+CGG | + | chr2_2:14923721-14923740 | None:intergenic | 35.0% | |
| !! | ATCAACATTTGGCTTGAAGT+TGG | - | chr2_2:14923856-14923875 | Msa0240130:intron | 35.0% |
| TCAGGCAGCATATAGTATAT+TGG | - | chr2_2:14923903-14923922 | Msa0240130:intron | 35.0% | |
| CAGGCAGCATATAGTATATT+GGG | - | chr2_2:14923904-14923923 | Msa0240130:intron | 35.0% | |
| ! | TTTCTGGTGTGTATCATGTT+CGG | - | chr2_2:14923935-14923954 | Msa0240130:intron | 35.0% |
| ! | ATGGATATGGTTAGTCACAA+GGG | + | chr2_2:14924014-14924033 | None:intergenic | 35.0% |
| ! | AATGGATATGGTTAGTCACA+AGG | + | chr2_2:14924015-14924034 | None:intergenic | 35.0% |
| ATGCAAGGATACAATGGATA+TGG | + | chr2_2:14924027-14924046 | None:intergenic | 35.0% | |
| AGGTGAAGGGAATAAGAGAA+GGG | + | chr2_2:14920116-14920135 | None:intergenic | 40.0% | |
| AAGGTGAAGGGAATAAGAGA+AGG | + | chr2_2:14920117-14920136 | None:intergenic | 40.0% | |
| AAGATGAAGTGTAGAAGCTC+CGG | + | chr2_2:14920198-14920217 | None:intergenic | 40.0% | |
| !! | TCTTCTCCTAGTTTTCAACC+TGG | - | chr2_2:14920429-14920448 | Msa0240130:CDS | 40.0% |
| !! | ATGTAGGTTGGTTTGAGCTA+GGG | + | chr2_2:14920728-14920747 | None:intergenic | 40.0% |
| !! | TATGTAGGTTGGTTTGAGCT+AGG | + | chr2_2:14920729-14920748 | None:intergenic | 40.0% |
| ATAACATGGATTTGAGTGGG+AGG | - | chr2_2:14920746-14920765 | Msa0240130:intron | 40.0% | |
| ATTTGAGTGGGAGGATAAAG+TGG | - | chr2_2:14920755-14920774 | Msa0240130:intron | 40.0% | |
| !! | TAGGCTGCAAAGAGTTGATA+TGG | - | chr2_2:14920893-14920912 | Msa0240130:intron | 40.0% |
| ACAATGAGTCATTGAAAGCG+CGG | - | chr2_2:14920949-14920968 | Msa0240130:intron | 40.0% | |
| !! | GTTGAGCTTCTGAGTTTTGA+TGG | + | chr2_2:14921324-14921343 | None:intergenic | 40.0% |
| GTGGTCAGAAAAAGTCAAAG+GGG | + | chr2_2:14921435-14921454 | None:intergenic | 40.0% | |
| CGTGGTCAGAAAAAGTCAAA+GGG | + | chr2_2:14921436-14921455 | None:intergenic | 40.0% | |
| GAAGGAGTTAATTGACCGAT+AGG | + | chr2_2:14921563-14921582 | None:intergenic | 40.0% | |
| TTATCTAGAAGCTGTGGTGA+AGG | + | chr2_2:14921581-14921600 | None:intergenic | 40.0% | |
| CACTCTCCAACAATGGTATT+CGG | - | chr2_2:14921652-14921671 | Msa0240130:CDS | 40.0% | |
| GGATGCACTAGTCAATCAAT+TGG | - | chr2_2:14921759-14921778 | Msa0240130:CDS | 40.0% | |
| ! | CGTTTTCTGATGAACTGTGA+AGG | - | chr2_2:14922174-14922193 | Msa0240130:intron | 40.0% |
| TACCATCTGAATCAAATCCC+TGG | + | chr2_2:14922261-14922280 | None:intergenic | 40.0% | |
| TTGAACTGCATGCCTATGAA+TGG | + | chr2_2:14922421-14922440 | None:intergenic | 40.0% | |
| AGAGAATTCTACAATGGCCA+TGG | - | chr2_2:14922457-14922476 | Msa0240130:intron | 40.0% | |
| AATTCTACAATGGCCATGGT+AGG | - | chr2_2:14922461-14922480 | Msa0240130:intron | 40.0% | |
| TAAATCCTATCCTCCTACCA+TGG | + | chr2_2:14922477-14922496 | None:intergenic | 40.0% | |
| GGAGGATAGGATTTACAGTA+CGG | - | chr2_2:14922482-14922501 | Msa0240130:intron | 40.0% | |
| !! | GCTTGTTATTTACTCGCGAA+CGG | + | chr2_2:14922522-14922541 | None:intergenic | 40.0% |
| AAGGTTGTCAAGCCATGATA+AGG | - | chr2_2:14922641-14922660 | Msa0240130:intron | 40.0% | |
| TTGTCAAGCCATGATAAGGT+TGG | - | chr2_2:14922645-14922664 | Msa0240130:intron | 40.0% | |
| !! | CCATGATAAGGTTGGCTTTA+CGG | - | chr2_2:14922653-14922672 | Msa0240130:intron | 40.0% |
| !! | CATGATAAGGTTGGCTTTAC+GGG | - | chr2_2:14922654-14922673 | Msa0240130:intron | 40.0% |
| GGTTGTCACCAAATTTGTGA+AGG | - | chr2_2:14922690-14922709 | Msa0240130:intron | 40.0% | |
| AAATCTGGCCAAGTTTGATC+AGG | + | chr2_2:14922839-14922858 | None:intergenic | 40.0% | |
| GTCAATCTAATATCAGCAGC+AGG | + | chr2_2:14922897-14922916 | None:intergenic | 40.0% | |
| AGATTGACAACAGTATCAGC+AGG | - | chr2_2:14922909-14922928 | Msa0240130:intron | 40.0% | |
| ! | AGGTTTGGAACCCATAGATA+AGG | + | chr2_2:14923002-14923021 | None:intergenic | 40.0% |
| ! | TTCGAGTTCATCATGTAGAG+CGG | + | chr2_2:14923040-14923059 | None:intergenic | 40.0% |
| TGATGCAAATGGAAGGGAAA+GGG | + | chr2_2:14923172-14923191 | None:intergenic | 40.0% | |
| ATAGGCCCTCATTCTATCTT+AGG | + | chr2_2:14923272-14923291 | None:intergenic | 40.0% | |
| !!! | AGATTTTTTTTAGGGGGTGG+AGG | + | chr2_2:14923356-14923375 | None:intergenic | 40.0% |
| TGCATGTAACCGATTGAGAT+GGG | + | chr2_2:14923418-14923437 | None:intergenic | 40.0% | |
| AATCGGTTACATGCAGATGT+TGG | - | chr2_2:14923423-14923442 | Msa0240130:intron | 40.0% | |
| !! | GTCTTGTTGATTTGTGTCAC+AGG | - | chr2_2:14923535-14923554 | Msa0240130:intron | 40.0% |
| CCGAAATATCAGAGAGATTG+AGG | - | chr2_2:14923718-14923737 | Msa0240130:CDS | 40.0% | |
| CTGGCAACAATGGAATATAC+TGG | + | chr2_2:14923779-14923798 | None:intergenic | 40.0% | |
| AAGTATCTCACCAGAATGTC+TGG | + | chr2_2:14923798-14923817 | None:intergenic | 40.0% | |
| AGACATTCTGGTGAGATACT+TGG | - | chr2_2:14923797-14923816 | Msa0240130:intron | 40.0% | |
| TTCTGGTGTGTATCATGTTC+GGG | - | chr2_2:14923936-14923955 | Msa0240130:intron | 40.0% | |
| TTCAACAAGAGCAGCATGTT+AGG | + | chr2_2:14923983-14924002 | None:intergenic | 40.0% | |
| GGTATGGAGTAGTTCTTCCA+TGG | - | chr2_2:14920068-14920087 | Msa0240130:three_prime_UTR | 45.0% | |
| GGAATAAGAGAAGGGTTCCT+CGG | + | chr2_2:14920108-14920127 | None:intergenic | 45.0% | |
| ACCGTTTGTGCAACTGAATG+GGG | + | chr2_2:14920173-14920192 | None:intergenic | 45.0% | |
| GACCGTTTGTGCAACTGAAT+GGG | + | chr2_2:14920174-14920193 | None:intergenic | 45.0% | |
| TGACCGTTTGTGCAACTGAA+TGG | + | chr2_2:14920175-14920194 | None:intergenic | 45.0% | |
| CACGACGCTCATTGTTGAAA+TGG | - | chr2_2:14920319-14920338 | Msa0240130:three_prime_UTR | 45.0% | |
| TTTCGTCCAAGTTTGAGCTG+AGG | - | chr2_2:14920685-14920704 | Msa0240130:intron | 45.0% | |
| ! | TTGGTTTGAGCTAGGGGATA+AGG | + | chr2_2:14920721-14920740 | None:intergenic | 45.0% |
| !! | TGTAGGTTGGTTTGAGCTAG+GGG | + | chr2_2:14920727-14920746 | None:intergenic | 45.0% |
| TGATTGCATAACTTGGAGGC+TGG | + | chr2_2:14920822-14920841 | None:intergenic | 45.0% | |
| GATAGGGAGGGTAGATCAAA+TGG | - | chr2_2:14921107-14921126 | Msa0240130:intron | 45.0% | |
| GTGACACGTTGAACCAATGA+GGG | - | chr2_2:14921196-14921215 | Msa0240130:intron | 45.0% | |
| !! | GCTTTGAGGTGTAGGAGAAA+TGG | + | chr2_2:14921268-14921287 | None:intergenic | 45.0% |
| !! | AATCAGAGGCTTTGAGGTGT+AGG | + | chr2_2:14921276-14921295 | None:intergenic | 45.0% |
| ACACCTCAAAGCCTCTGATT+AGG | - | chr2_2:14921276-14921295 | Msa0240130:intron | 45.0% | |
| TCTCCTAATCAGAGGCTTTG+AGG | + | chr2_2:14921282-14921301 | None:intergenic | 45.0% | |
| GTGTTGGATCTCCTAATCAG+AGG | + | chr2_2:14921290-14921309 | None:intergenic | 45.0% | |
| GATTAGGAGATCCAACACCT+AGG | - | chr2_2:14921292-14921311 | Msa0240130:intron | 45.0% | |
| !! | AGTTTTGATGGCACTCACCT+AGG | + | chr2_2:14921312-14921331 | None:intergenic | 45.0% |
| TTACTATCCGATTCCGCTAG+CGG | + | chr2_2:14921355-14921374 | None:intergenic | 45.0% | |
| GCGTGGTCAGAAAAAGTCAA+AGG | + | chr2_2:14921437-14921456 | None:intergenic | 45.0% | |
| !! | ACTTTTTCTGACCACGCGAA+TGG | - | chr2_2:14921440-14921459 | Msa0240130:CDS | 45.0% |
| ! | CTTTTTCTGACCACGCGAAT+GGG | - | chr2_2:14921441-14921460 | Msa0240130:CDS | 45.0% |
| ! | TTTTTCTGACCACGCGAATG+GGG | - | chr2_2:14921442-14921461 | Msa0240130:CDS | 45.0% |
| AGAGTCATGTCTATCACAGG+TGG | + | chr2_2:14921489-14921508 | None:intergenic | 45.0% | |
| CGTGTCTTATCTAGAAGCTG+TGG | + | chr2_2:14921587-14921606 | None:intergenic | 45.0% | |
| AGCTGTCAGAAACACTGTCA+TGG | + | chr2_2:14921617-14921636 | None:intergenic | 45.0% | |
| AACGTGCCGAATACCATTGT+TGG | + | chr2_2:14921661-14921680 | None:intergenic | 45.0% | |
| !! | AGGATGATGGATCACCAATC+TGG | - | chr2_2:14922235-14922254 | Msa0240130:intron | 45.0% |
| AATCAAATCCCTGGCCAGAT+TGG | + | chr2_2:14922252-14922271 | None:intergenic | 45.0% | |
| CGAACAACCTGTAGCAGATT+CGG | - | chr2_2:14922384-14922403 | Msa0240130:intron | 45.0% | |
| AATGTGTCCGAATCTGCTAC+AGG | + | chr2_2:14922394-14922413 | None:intergenic | 45.0% | |
| TAGGCATGCAGTTCAACTCA+AGG | - | chr2_2:14922425-14922444 | Msa0240130:intron | 45.0% | |
| AGGCATGCAGTTCAACTCAA+GGG | - | chr2_2:14922426-14922445 | Msa0240130:intron | 45.0% | |
| ! | TGTTATTTACTCGCGAACGG+CGG | + | chr2_2:14922519-14922538 | None:intergenic | 45.0% |
| TCATGGCTTGACAACCTTCT+CGG | + | chr2_2:14922639-14922658 | None:intergenic | 45.0% | |
| CCGTAAAGCCAACCTTATCA+TGG | + | chr2_2:14922656-14922675 | None:intergenic | 45.0% | |
| TTTACGGGATGAAGGGAAGT+GGG | - | chr2_2:14922669-14922688 | Msa0240130:intron | 45.0% | |
| AATATCAGCAGCAGGAGAAG+AGG | + | chr2_2:14922889-14922908 | None:intergenic | 45.0% | |
| AGCGGGAAAAATGTGAGTGA+AGG | + | chr2_2:14923022-14923041 | None:intergenic | 45.0% | |
| TCGAGTTCATCATGTAGAGC+GGG | + | chr2_2:14923039-14923058 | None:intergenic | 45.0% | |
| ! | AAAAGGGTGTGTGGAAAGTG+AGG | + | chr2_2:14923140-14923159 | None:intergenic | 45.0% |
| GTGATGCAAATGGAAGGGAA+AGG | + | chr2_2:14923173-14923192 | None:intergenic | 45.0% | |
| ACGACGTGATGCAAATGGAA+GGG | + | chr2_2:14923178-14923197 | None:intergenic | 45.0% | |
| AACGACGTGATGCAAATGGA+AGG | + | chr2_2:14923179-14923198 | None:intergenic | 45.0% | |
| TCCATTTGCATCACGTCGTT+AGG | - | chr2_2:14923179-14923198 | Msa0240130:intron | 45.0% | |
| TCCTAACGACGTGATGCAAA+TGG | + | chr2_2:14923183-14923202 | None:intergenic | 45.0% | |
| ATGGCAGCATGAGACACATT+GGG | + | chr2_2:14923223-14923242 | None:intergenic | 45.0% | |
| ! | AGGACTAGAGGTAGCTTTTC+AGG | + | chr2_2:14923336-14923355 | None:intergenic | 45.0% |
| CTGCATGTAACCGATTGAGA+TGG | + | chr2_2:14923419-14923438 | None:intergenic | 45.0% | |
| TGTCACAGGACGAGAAAGAT+AGG | - | chr2_2:14923549-14923568 | Msa0240130:intron | 45.0% | |
| TCCATTGTTGCCAGACATTC+TGG | - | chr2_2:14923785-14923804 | Msa0240130:intron | 45.0% | |
| ACCAGAATGTCTGGCAACAA+TGG | + | chr2_2:14923789-14923808 | None:intergenic | 45.0% | |
| ! | GCTTGAAGTTGGTTGTGTAG+TGG | - | chr2_2:14923867-14923886 | Msa0240130:intron | 45.0% |
| !!! | AATGGGGGGTTTTAGCTGCT+GGG | + | chr2_2:14920157-14920176 | None:intergenic | 50.0% |
| CGTTTGTGCAACTGAATGGG+GGG | + | chr2_2:14920171-14920190 | None:intergenic | 50.0% | |
| CCGTTTGTGCAACTGAATGG+GGG | + | chr2_2:14920172-14920191 | None:intergenic | 50.0% | |
| CCCCCATTCAGTTGCACAAA+CGG | - | chr2_2:14920169-14920188 | Msa0240130:three_prime_UTR | 50.0% | |
| TCAGTTGCACAAACGGTCAC+CGG | - | chr2_2:14920176-14920195 | Msa0240130:three_prime_UTR | 50.0% | |
| TGAGCTAGGGGATAAGGAGT+TGG | + | chr2_2:14920715-14920734 | None:intergenic | 50.0% | |
| ACGTAGAAGCTTCGATAGGG+AGG | - | chr2_2:14921094-14921113 | Msa0240130:intron | 50.0% | |
| CGTAGAAGCTTCGATAGGGA+GGG | - | chr2_2:14921095-14921114 | Msa0240130:intron | 50.0% | |
| CGTGACACGTTGAACCAATG+AGG | - | chr2_2:14921195-14921214 | Msa0240130:intron | 50.0% | |
| AGATAGCATGGAGCCCTCAT+TGG | + | chr2_2:14921212-14921231 | None:intergenic | 50.0% | |
| TTTCTGACAGCTCCGCACTT+AGG | - | chr2_2:14921625-14921644 | Msa0240130:CDS | 50.0% | |
| AGGCAGACACTCTCCAACAA+TGG | - | chr2_2:14921645-14921664 | Msa0240130:CDS | 50.0% | |
| ATGGATCACCAATCTGGCCA+GGG | - | chr2_2:14922241-14922260 | Msa0240130:intron | 50.0% | |
| GGCCAGGGATTTGATTCAGA+TGG | - | chr2_2:14922256-14922275 | Msa0240130:intron | 50.0% | |
| CATGCAGTTCAACTCAAGGG+AGG | - | chr2_2:14922429-14922448 | Msa0240130:intron | 50.0% | |
| TCTACAATGGCCATGGTAGG+AGG | - | chr2_2:14922464-14922483 | Msa0240130:intron | 50.0% | |
| AATGGCCATGGTAGGAGGAT+AGG | - | chr2_2:14922469-14922488 | Msa0240130:intron | 50.0% | |
| CATGGCTTGACAACCTTCTC+GGG | + | chr2_2:14922638-14922657 | None:intergenic | 50.0% | |
| !! | AGGTTGGCTTTACGGGATGA+AGG | - | chr2_2:14922661-14922680 | Msa0240130:intron | 50.0% |
| !! | GGTTGGCTTTACGGGATGAA+GGG | - | chr2_2:14922662-14922681 | Msa0240130:intron | 50.0% |
| CTTTACGGGATGAAGGGAAG+TGG | - | chr2_2:14922668-14922687 | Msa0240130:intron | 50.0% | |
| TGAGTCCCAGTGAAGTTCCA+TGG | - | chr2_2:14922731-14922750 | Msa0240130:intron | 50.0% | |
| CTCACTAACCAAGTGCTTCC+CGG | + | chr2_2:14922764-14922783 | None:intergenic | 50.0% | |
| CATGGCAGCATGAGACACAT+TGG | + | chr2_2:14923224-14923243 | None:intergenic | 50.0% | |
| GGCCCTCATTCTATCTTAGG+TGG | + | chr2_2:14923269-14923288 | None:intergenic | 50.0% | |
| CGGAGTCACTGCACTAACCA+TGG | + | chr2_2:14920088-14920107 | None:intergenic | 55.0% | |
| TGGTTAGTGCAGTGACTCCG+AGG | - | chr2_2:14920088-14920107 | Msa0240130:three_prime_UTR | 55.0% | |
| !!! | GAATGGGGGGTTTTAGCTGC+TGG | + | chr2_2:14920158-14920177 | None:intergenic | 55.0% |
| GGAGGTCCTCAGCTCAAACT+TGG | + | chr2_2:14920694-14920713 | None:intergenic | 55.0% | |
| GCTAGGGGATAAGGAGTTGG+AGG | + | chr2_2:14920712-14920731 | None:intergenic | 55.0% | |
| ! | GAGTCATTGAAAGCGCGGAC+AGG | - | chr2_2:14920954-14920973 | Msa0240130:intron | 55.0% |
| GATGGCACTCACCTAGGTGT+TGG | + | chr2_2:14921306-14921325 | None:intergenic | 55.0% | |
| !! | GGAGAGTGTCTGCCTAAGTG+CGG | + | chr2_2:14921640-14921659 | None:intergenic | 55.0% |
| GATGGATCACCAATCTGGCC+AGG | - | chr2_2:14922240-14922259 | Msa0240130:intron | 55.0% | |
| TTACTCGCGAACGGCGGTTA+TGG | + | chr2_2:14922513-14922532 | None:intergenic | 55.0% | |
| CCTCGCCATGGAACTTCACT+GGG | + | chr2_2:14922739-14922758 | None:intergenic | 55.0% | |
| TCCTCGCCATGGAACTTCAC+TGG | + | chr2_2:14922740-14922759 | None:intergenic | 55.0% | |
| GAAGTTCCATGGCGAGGATC+CGG | - | chr2_2:14922742-14922761 | Msa0240130:intron | 55.0% | |
| AAGTTCCATGGCGAGGATCC+GGG | - | chr2_2:14922743-14922762 | Msa0240130:intron | 55.0% | |
| !! | CGGGAAGCACTTGGTTAGTG+AGG | - | chr2_2:14922762-14922781 | Msa0240130:intron | 55.0% |
| TTTAGGGGGTGGAGGACTAG+AGG | + | chr2_2:14923348-14923367 | None:intergenic | 55.0% | |
| GCAACTCGAGCGATAGCTCA+CGG | + | chr2_2:14923580-14923599 | None:intergenic | 55.0% | |
| ! | CGCTCGAGTTGCACAACGAA+AGG | - | chr2_2:14923588-14923607 | Msa0240130:intron | 55.0% |
| TCAACCTGCTCCACCGCTAG+CGG | - | chr2_2:14921339-14921358 | Msa0240130:intron | 60.0% | |
| TGCTCCACCGCTAGCGGAAT+CGG | - | chr2_2:14921345-14921364 | Msa0240130:intron | 60.0% | |
| CTATCCGATTCCGCTAGCGG+TGG | + | chr2_2:14921352-14921371 | None:intergenic | 60.0% | |
| TTCTGACCACGCGAATGGGG+TGG | - | chr2_2:14921445-14921464 | Msa0240130:CDS | 60.0% | |
| TGACAACCTTCTCGGGTGGC+TGG | + | chr2_2:14922631-14922650 | None:intergenic | 60.0% | |
| GGCTTGACAACCTTCTCGGG+TGG | + | chr2_2:14922635-14922654 | None:intergenic | 60.0% | |
| CCCAGTGAAGTTCCATGGCG+AGG | - | chr2_2:14922736-14922755 | Msa0240130:intron | 60.0% | |
| GGGTGTGTGGAAAGTGAGGC+TGG | + | chr2_2:14923136-14923155 | None:intergenic | 60.0% | |
| GATTCCGCTAGCGGTGGAGC+AGG | + | chr2_2:14921346-14921365 | None:intergenic | 65.0% | |
| CACAGTCCACCCCATTCGCG+TGG | + | chr2_2:14921454-14921473 | None:intergenic | 65.0% | |
| !! | CACGCGAATGGGGTGGACTG+TGG | - | chr2_2:14921452-14921471 | Msa0240130:CDS | 65.0% |
| CAACCTTCTCGGGTGGCTGG+TGG | + | chr2_2:14922628-14922647 | None:intergenic | 65.0% | |
| TGCTTCCCGGATCCTCGCCA+TGG | + | chr2_2:14922751-14922770 | None:intergenic | 65.0% | |
| !! | GCGAGGATCCGGGAAGCACT+TGG | - | chr2_2:14922753-14922772 | Msa0240130:intron | 65.0% |
| CTCGGGTGGCTGGTGGAGGA+GGG | + | chr2_2:14922621-14922640 | None:intergenic | 70.0% | |
| TCTCGGGTGGCTGGTGGAGG+AGG | + | chr2_2:14922622-14922641 | None:intergenic | 70.0% | |
| CCTTCTCGGGTGGCTGGTGG+AGG | + | chr2_2:14922625-14922644 | None:intergenic | 70.0% | |
| CCTCCACCAGCCACCCGAGA+AGG | - | chr2_2:14922622-14922641 | Msa0240130:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 14920053 | 14924111 | 14920053 | ID=Msa0240130;Name=Msa0240130 |
| chr2_2 | mRNA | 14920053 | 14924111 | 14920053 | ID=Msa0240130-mRNA-1;Parent=Msa0240130;Name=Msa0240130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|0.25|0.2|5|342|313 |
| chr2_2 | exon | 14920053 | 14920607 | 14920053 | ID=Msa0240130-mRNA-1:exon:6156;Parent=Msa0240130-mRNA-1 |
| chr2_2 | exon | 14921381 | 14921927 | 14921381 | ID=Msa0240130-mRNA-1:exon:6155;Parent=Msa0240130-mRNA-1 |
| chr2_2 | exon | 14923706 | 14923771 | 14923706 | ID=Msa0240130-mRNA-1:exon:6154;Parent=Msa0240130-mRNA-1 |
| chr2_2 | exon | 14923941 | 14924002 | 14923941 | ID=Msa0240130-mRNA-1:exon:6153;Parent=Msa0240130-mRNA-1 |
| chr2_2 | exon | 14924024 | 14924111 | 14924024 | ID=Msa0240130-mRNA-1:exon:6152;Parent=Msa0240130-mRNA-1 |
| chr2_2 | five_prime_UTR | 14924078 | 14924111 | 14924078 | ID=Msa0240130-mRNA-1:five_prime_utr;Parent=Msa0240130-mRNA-1 |
| chr2_2 | CDS | 14924024 | 14924077 | 14924024 | ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1 |
| chr2_2 | CDS | 14923941 | 14924002 | 14923941 | ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1 |
| chr2_2 | CDS | 14923706 | 14923771 | 14923706 | ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1 |
| chr2_2 | CDS | 14921381 | 14921927 | 14921381 | ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1 |
| chr2_2 | CDS | 14920395 | 14920607 | 14920395 | ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1 |
| chr2_2 | three_prime_UTR | 14920053 | 14920394 | 14920053 | ID=Msa0240130-mRNA-1:three_prime_utr;Parent=Msa0240130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
