AlfalfaGEDB | Msa0240130

M. sativa cultivar zhongmu-4 / Msa0240130

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240130	XP_003597516.1	96.032	252	10	0	62	313	1	252	2.92e-178	503

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240130	sp\|Q9SZL8\|FRS5_ARATH	38.251	183	103	3	58	231	2	183	2.82e-24	106

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240130	G7IHU5	96.032	252	10	0	62	313	1	252	1.40e-178	503

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TFs/TRs:

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Gene ID	Type	Classification
Msa0240130	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0240090	Msa0240130	0.814447	1.533788e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240130	MtrunA17_Chr2g0329361	96.032	252	10	0	62	313	1	252	0.0	503
Msa0240130	MtrunA17_Chr7g0233911	37.864	206	108	6	106	306	15	205	7.39e-42	144
Msa0240130	MtrunA17_Chr3g0078041	36.269	193	103	5	116	304	44	220	1.60e-34	125
Msa0240130	MtrunA17_Chr2g0329421	36.649	191	106	5	121	309	26	203	1.41e-33	122
Msa0240130	MtrunA17_Chr4g0033611	37.222	180	103	4	121	300	75	244	9.68e-31	116
Msa0240130	MtrunA17_Chr1g0202341	44.037	109	60	1	120	228	49	156	6.61e-24	102
Msa0240130	MtrunA17_Chr5g0448761	44.737	114	61	2	120	231	58	171	1.90e-20	92.0
Msa0240130	MtrunA17_Chr2g0287061	35.374	147	72	3	119	259	26	155	9.30e-19	87.0
Msa0240130	MtrunA17_Chr2g0287061	33.019	106	56	1	120	225	181	271	1.66e-14	74.3
Msa0240130	MtrunA17_Chr6g0458391	35.115	131	83	1	122	252	225	353	7.59e-18	84.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0240130	AT2G43280.1	43.077	195	89	6	115	304	15	192	3.97e-41	142
Msa0240130	AT3G07500.1	39.362	188	107	3	117	304	28	208	2.61e-38	135
Msa0240130	AT2G43280.2	44.509	173	74	6	137	304	2	157	6.27e-37	130
Msa0240130	AT3G59470.3	35.135	222	125	6	92	305	32	242	2.71e-34	125
Msa0240130	AT3G59470.1	35.135	222	125	6	92	305	32	242	2.71e-34	125
Msa0240130	AT3G59470.2	35.135	222	125	6	92	305	44	254	2.84e-34	126
Msa0240130	AT4G12850.1	34.783	184	104	4	121	304	10	177	1.65e-32	119
Msa0240130	AT4G38180.1	38.251	183	103	3	58	231	2	183	2.86e-25	106
Msa0240130	AT4G12850.2	39.048	105	59	1	121	225	10	109	5.46e-22	90.1
Msa0240130	AT4G12850.4	39.048	105	59	1	121	225	10	109	9.91e-22	89.7

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Find 106 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACAATTCTGAACGATT+TGG	0.340360	2_2:-14920490	Msa0240130:CDS
AAATGGTTTACCTATTATCC+AGG	0.470951	2_2:+14923695	None:intergenic
AACAATTTAGAATTATGTAC+AGG	0.522470	2_2:-14921799	Msa0240130:CDS
AAGATGAAGTGTAGAAGCTC+CGG	0.523959	2_2:+14923947	None:intergenic
AAGGTGAAGGGAATAAGAGA+AGG	0.553305	2_2:+14924028	None:intergenic
AAGGTTGTCAAGCCATGATA+AGG	0.504631	2_2:-14921501	Msa0240130:CDS
AAGTATCTCACCAGAATGTC+TGG	0.414991	2_2:+14920347	None:intergenic
AAGTTCCATGGCGAGGATCC+GGG	0.502060	2_2:-14921399	Msa0240130:CDS
AATAAATCAAAATGTGCAGC+TGG	0.482642	2_2:+14920076	None:intergenic
AATCAAATCCCTGGCCAGAT+TGG	0.455766	2_2:+14921893	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTACAACAAAGGTGAA+GGG	+	chr2_2:14920129-14920148	None:intergenic	30.0%
TCAAATTACAACAAAGGTGA+AGG	+	chr2_2:14920130-14920149	None:intergenic	30.0%
GGTTGTTCAAATTACAACAA+AGG	+	chr2_2:14920136-14920155	None:intergenic	30.0%
TGGAATATTGAAAAATGGGA+GGG	+	chr2_2:14920273-14920292	None:intergenic	30.0%
TTGGAATATTGAAAAATGGG+AGG	+	chr2_2:14920274-14920293	None:intergenic	30.0%
TTCAATTGAGTTCAGAAAGT+TGG	+	chr2_2:14920293-14920312	None:intergenic	30.0%
CTTTCTGAACTCAATTGAAA+TGG	-	chr2_2:14920294-14920313	Msa0240130:three_prime_UTR	30.0%
AAATGGTTTACCTATTATCC+AGG	+	chr2_2:14920450-14920469	None:intergenic	30.0%
GAAGAAGAAGATGAAGAAAA+TGG	+	chr2_2:14920467-14920486	None:intergenic	30.0%
TACATAACATGGATTTGAGT+GGG	-	chr2_2:14920743-14920762	Msa0240130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	14920053	14924111	14920053	ID=Msa0240130;Name=Msa0240130
chr2_2	mRNA	14920053	14924111	14920053	ID=Msa0240130-mRNA-1;Parent=Msa0240130;Name=Msa0240130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34\|1\|1\|1\|0.25\|0.2\|5\|342\|313
chr2_2	exon	14920053	14920607	14920053	ID=Msa0240130-mRNA-1:exon:6156;Parent=Msa0240130-mRNA-1
chr2_2	exon	14921381	14921927	14921381	ID=Msa0240130-mRNA-1:exon:6155;Parent=Msa0240130-mRNA-1
chr2_2	exon	14923706	14923771	14923706	ID=Msa0240130-mRNA-1:exon:6154;Parent=Msa0240130-mRNA-1
chr2_2	exon	14923941	14924002	14923941	ID=Msa0240130-mRNA-1:exon:6153;Parent=Msa0240130-mRNA-1
chr2_2	exon	14924024	14924111	14924024	ID=Msa0240130-mRNA-1:exon:6152;Parent=Msa0240130-mRNA-1
chr2_2	five_prime_UTR	14924078	14924111	14924078	ID=Msa0240130-mRNA-1:five_prime_utr;Parent=Msa0240130-mRNA-1
chr2_2	CDS	14924024	14924077	14924024	ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1
chr2_2	CDS	14923941	14924002	14923941	ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1
chr2_2	CDS	14923706	14923771	14923706	ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1
chr2_2	CDS	14921381	14921927	14921381	ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1
chr2_2	CDS	14920395	14920607	14920395	ID=Msa0240130-mRNA-1:cds;Parent=Msa0240130-mRNA-1
chr2_2	three_prime_UTR	14920053	14920394	14920053	ID=Msa0240130-mRNA-1:three_prime_utr;Parent=Msa0240130-mRNA-1

Gene Sequence

>Msa0240130

ATGGTTAGTGCAGTGACTCCGAGGAACCCTTCTCTTATTCCCTTCACCTTTGTTCTAAAACCCCCCATTCAGTTGCACAAACGGTCACCGGAGCTTCTACACTTCATCTTATTCGTGTTCTTCTATTCGCTTTGCTTAAATCTGGTTGATAATCTTCTCCTAGTTTTCAACCTGGATAATAGGATGATGGATCACCAATCTGGCCAGGGATTTGATTCAGATGGTAGTGACTTTGATGTGTTAGCAGAAATCAGTGAGAAACATGAGAAAGTAGAAGATGAGTTTACAAACAATTTAGAATTATGTACAGGCGAAGATGAAAAGTTTGTCGAACAACCTGTAGCAGATTCGGACACATTAGAACCATTCATAGGCATGCAGTTCAACTCAAGGGAGGAAGCAAGAGAATTCTACAATGGCCATGGTAGGAGGATAGGATTTACAGTACGGATACACCATAACCGCCGTTCGCGAGTAAATAACAAGCTAATTGGTCAAGATTTTGTTTGCTCAAAAGAAGGTTTTCGTGCAAAAAAGTATGTGCACAGAAAAGATAGAGTGCTCCCTCCTCCACCAGCCACCCGAGAAGGTTGTCAAGCCATGATAAGGTTGGCTTTACGGGATGAAGGGAAGTGGGTTGTCACCAAATTTGTGAAGGAACATACACATAAACTGATGAGTCCCAGTGAAGTTCCATGGCGAGGATCCGGGAAGCACTTGGTTAGTGAGGACGAGAAAGATAGGAGAATCCGTGAGCTATCGCTCGAGTTGCACAACGAAAGGCAAAAGTACAAAAGGCGTTGTGCAGCATATGAAGAACAGTTAAATACAATTCTGAACGATTTGGAAAAGCACACAGAACATATCTCTAAAAAAGTTGCTGATGTAGTCCGAAATATCAGAGAGATTGAGGAAGAAAAATCAGATTTAGATGGCAGGTAA

Protein sequence

>Msa0240130

MVSAVTPRNPSLIPFTFVLKPPIQLHKRSPELLHFILFVFFYSLCLNLVDNLLLVFNLDNRMMDHQSGQGFDSDGSDFDVLAEISEKHEKVEDEFTNNLELCTGEDEKFVEQPVADSDTLEPFIGMQFNSREEAREFYNGHGRRIGFTVRIHHNRRSRVNNKLIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLMSPSEVPWRGSGKHLVSEDEKDRRIRELSLELHNERQKYKRRCAAYEEQLNTILNDLEKHTEHISKKVADVVRNIREIEEEKSDLDGR*