Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0246580 | XP_003595363.1 | 89.130 | 230 | 25 | 0 | 1 | 230 | 1 | 230 | 6.22e-141 | 404 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0246580 | sp|Q84QC2|ERF17_ARATH | 71.591 | 88 | 25 | 0 | 17 | 104 | 10 | 97 | 2.97e-41 | 142 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0246580 | G7IIR3 | 89.130 | 230 | 25 | 0 | 1 | 230 | 1 | 230 | 2.97e-141 | 404 |
Gene ID | Type | Classification |
---|---|---|
Msa0246580 | TF | AP2/ERF-ERF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0246580 | Msa0285070 | 0.860625 | 1.813121e-63 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0246580 | MtrunA17_Chr2g0301181 | 89.130 | 230 | 25 | 0 | 1 | 230 | 1 | 230 | 5.72e-145 | 404 |
Msa0246580 | MtrunA17_Chr2g0301171 | 72.650 | 234 | 28 | 2 | 1 | 230 | 1 | 202 | 3.78e-117 | 332 |
Msa0246580 | MtrunA17_Chr2g0301191 | 65.532 | 235 | 55 | 3 | 1 | 230 | 1 | 214 | 4.97e-101 | 292 |
Msa0246580 | MtrunA17_Chr1g0150671 | 36.431 | 269 | 94 | 9 | 14 | 230 | 41 | 284 | 3.37e-38 | 134 |
Msa0246580 | MtrunA17_Chr1g0150631 | 52.459 | 122 | 51 | 1 | 14 | 128 | 33 | 154 | 4.37e-37 | 129 |
Msa0246580 | MtrunA17_Chr1g0150691 | 60.000 | 100 | 33 | 1 | 14 | 106 | 17 | 116 | 5.94e-37 | 129 |
Msa0246580 | MtrunA17_Chr1g0150661 | 36.957 | 230 | 86 | 8 | 18 | 230 | 34 | 221 | 7.38e-35 | 124 |
Msa0246580 | MtrunA17_Chr3g0136551 | 38.288 | 222 | 111 | 7 | 19 | 230 | 65 | 270 | 5.27e-32 | 117 |
Msa0246580 | MtrunA17_Chr3g0136541 | 62.353 | 85 | 28 | 1 | 21 | 101 | 42 | 126 | 8.70e-30 | 111 |
Msa0246580 | MtrunA17_Chr7g0225131 | 69.118 | 68 | 18 | 1 | 14 | 81 | 24 | 88 | 3.72e-28 | 102 |
Msa0246580 | MtrunA17_Chr4g0017851 | 43.478 | 115 | 63 | 1 | 13 | 127 | 112 | 224 | 1.20e-22 | 93.6 |
Msa0246580 | MtrunA17_Chr3g0134161 | 66.667 | 57 | 19 | 0 | 19 | 75 | 45 | 101 | 4.35e-22 | 89.4 |
Msa0246580 | MtrunA17_Chr1g0153151 | 63.158 | 57 | 21 | 0 | 19 | 75 | 44 | 100 | 1.18e-20 | 85.5 |
Msa0246580 | MtrunA17_Chr5g0401871 | 48.780 | 82 | 38 | 1 | 19 | 96 | 25 | 106 | 1.47e-20 | 85.5 |
Msa0246580 | MtrunA17_Chr7g0275841 | 55.000 | 60 | 27 | 0 | 18 | 77 | 27 | 86 | 3.16e-20 | 84.3 |
Msa0246580 | MtrunA17_Chr8g0346741 | 46.154 | 78 | 34 | 1 | 18 | 87 | 38 | 115 | 6.18e-20 | 83.6 |
Msa0246580 | MtrunA17_Chr1g0196781 | 57.627 | 59 | 25 | 0 | 18 | 76 | 151 | 209 | 1.09e-19 | 85.9 |
Msa0246580 | MtrunA17_Chr5g0425561 | 48.718 | 78 | 40 | 0 | 7 | 84 | 161 | 238 | 1.19e-19 | 86.3 |
Msa0246580 | MtrunA17_Chr3g0115631 | 57.377 | 61 | 26 | 0 | 16 | 76 | 147 | 207 | 1.80e-19 | 85.5 |
Msa0246580 | MtrunA17_Chr2g0324131 | 55.556 | 63 | 28 | 0 | 14 | 76 | 213 | 275 | 7.25e-19 | 84.3 |
Msa0246580 | MtrunA17_Chr8g0382491 | 34.307 | 137 | 68 | 2 | 16 | 150 | 110 | 226 | 1.34e-18 | 82.4 |
Msa0246580 | MtrunA17_Chr1g0170531 | 48.718 | 78 | 36 | 2 | 1 | 77 | 74 | 148 | 1.73e-18 | 80.9 |
Msa0246580 | MtrunA17_Chr5g0399441 | 47.297 | 74 | 39 | 0 | 2 | 75 | 11 | 84 | 6.76e-18 | 78.2 |
Msa0246580 | MtrunA17_Chr6g0486701 | 60.345 | 58 | 23 | 0 | 18 | 75 | 43 | 100 | 7.89e-18 | 79.0 |
Msa0246580 | MtrunA17_Chr4g0055781 | 52.308 | 65 | 30 | 1 | 12 | 75 | 95 | 159 | 9.32e-18 | 79.3 |
Msa0246580 | MtrunA17_Chr3g0140161 | 34.615 | 130 | 80 | 2 | 14 | 139 | 38 | 166 | 1.69e-17 | 77.4 |
Msa0246580 | MtrunA17_Chr2g0334031 | 40.217 | 92 | 54 | 1 | 3 | 93 | 100 | 191 | 1.87e-17 | 80.1 |
Msa0246580 | MtrunA17_Chr2g0316931 | 57.895 | 57 | 24 | 0 | 19 | 75 | 31 | 87 | 3.04e-17 | 77.0 |
Msa0246580 | MtrunA17_Chr8g0334801 | 50.000 | 74 | 36 | 1 | 3 | 75 | 35 | 108 | 3.29e-17 | 77.0 |
Msa0246580 | MtrunA17_Chr2g0295421 | 42.857 | 77 | 44 | 0 | 2 | 78 | 79 | 155 | 4.79e-17 | 77.8 |
Msa0246580 | MtrunA17_Chr7g0232261 | 56.897 | 58 | 25 | 0 | 19 | 76 | 61 | 118 | 5.13e-17 | 77.0 |
Msa0246580 | MtrunA17_Chr2g0282651 | 57.895 | 57 | 24 | 0 | 19 | 75 | 70 | 126 | 8.10e-17 | 77.0 |
Msa0246580 | MtrunA17_Chr2g0282621 | 53.030 | 66 | 29 | 1 | 19 | 84 | 15 | 78 | 8.40e-17 | 75.1 |
Msa0246580 | MtrunA17_Chr4g0063751 | 43.373 | 83 | 47 | 0 | 16 | 98 | 4 | 86 | 1.07e-16 | 75.9 |
Msa0246580 | MtrunA17_Chr4g0055801 | 55.172 | 58 | 25 | 1 | 19 | 75 | 154 | 211 | 1.36e-16 | 77.0 |
Msa0246580 | MtrunA17_Chr4g0023411 | 55.172 | 58 | 26 | 0 | 19 | 76 | 65 | 122 | 1.71e-16 | 75.1 |
Msa0246580 | MtrunA17_Chr4g0055951 | 50.000 | 64 | 32 | 0 | 12 | 75 | 67 | 130 | 1.77e-16 | 76.3 |
Msa0246580 | MtrunA17_Chr7g0221501 | 48.438 | 64 | 33 | 0 | 12 | 75 | 44 | 107 | 1.81e-16 | 74.3 |
Msa0246580 | MtrunA17_Chr2g0323171 | 55.172 | 58 | 26 | 0 | 19 | 76 | 65 | 122 | 1.82e-16 | 74.7 |
Msa0246580 | MtrunA17_Chr1g0186731 | 56.667 | 60 | 25 | 1 | 19 | 77 | 21 | 80 | 2.53e-16 | 73.2 |
Msa0246580 | MtrunA17_Chr3g0099871 | 56.140 | 57 | 25 | 0 | 19 | 75 | 27 | 83 | 3.33e-16 | 74.7 |
Msa0246580 | MtrunA17_Chr8g0335331 | 55.932 | 59 | 25 | 1 | 19 | 76 | 125 | 183 | 3.53e-16 | 74.3 |
Msa0246580 | MtrunA17_Chr8g0335311 | 55.932 | 59 | 25 | 1 | 19 | 76 | 96 | 154 | 3.53e-16 | 74.3 |
Msa0246580 | MtrunA17_Chr4g0003421 | 53.333 | 60 | 28 | 0 | 16 | 75 | 37 | 96 | 3.74e-16 | 75.1 |
Msa0246580 | MtrunA17_Chr5g0396301 | 51.667 | 60 | 27 | 1 | 19 | 76 | 18 | 77 | 4.21e-16 | 73.2 |
Msa0246580 | MtrunA17_Chr1g0195151 | 43.421 | 76 | 42 | 1 | 2 | 77 | 61 | 135 | 4.34e-16 | 75.5 |
Msa0246580 | MtrunA17_Chr8g0367911 | 53.571 | 56 | 26 | 0 | 19 | 74 | 44 | 99 | 5.50e-16 | 75.1 |
Msa0246580 | MtrunA17_Chr8g0344961 | 40.909 | 88 | 51 | 1 | 6 | 93 | 112 | 198 | 5.72e-16 | 75.9 |
Msa0246580 | MtrunA17_Chr2g0333011 | 50.820 | 61 | 30 | 0 | 15 | 75 | 3 | 63 | 6.34e-16 | 72.8 |
Msa0246580 | MtrunA17_Chr8g0390091 | 50.000 | 62 | 31 | 0 | 14 | 75 | 32 | 93 | 7.39e-16 | 73.9 |
Msa0246580 | MtrunA17_Chr5g0396181 | 36.986 | 146 | 81 | 3 | 19 | 161 | 21 | 158 | 7.42e-16 | 73.2 |
Msa0246580 | MtrunA17_Chr3g0137174 | 51.667 | 60 | 29 | 0 | 19 | 78 | 8 | 67 | 1.04e-15 | 72.8 |
Msa0246580 | MtrunA17_Chr8g0340311 | 51.724 | 58 | 28 | 0 | 19 | 76 | 47 | 104 | 1.15e-15 | 72.8 |
Msa0246580 | MtrunA17_Chr1g0196871 | 43.590 | 78 | 37 | 2 | 19 | 89 | 16 | 93 | 1.21e-15 | 70.1 |
Msa0246580 | MtrunA17_Chr7g0221471 | 50.877 | 57 | 28 | 0 | 19 | 75 | 51 | 107 | 1.24e-15 | 72.0 |
Msa0246580 | MtrunA17_Chr2g0331231 | 51.724 | 58 | 28 | 0 | 18 | 75 | 40 | 97 | 1.67e-15 | 72.4 |
Msa0246580 | MtrunA17_Chr4g0002631 | 51.667 | 60 | 29 | 0 | 19 | 78 | 8 | 67 | 2.04e-15 | 72.0 |
Msa0246580 | MtrunA17_Chr1g0186671 | 56.667 | 60 | 25 | 1 | 19 | 77 | 19 | 78 | 2.41e-15 | 70.5 |
Msa0246580 | MtrunA17_Chr1g0183981 | 50.000 | 76 | 36 | 2 | 1 | 74 | 56 | 131 | 2.64e-15 | 72.0 |
Msa0246580 | MtrunA17_Chr4g0046161 | 53.226 | 62 | 24 | 2 | 19 | 77 | 57 | 116 | 3.49e-15 | 69.7 |
Msa0246580 | MtrunA17_Chr4g0044881 | 49.206 | 63 | 32 | 0 | 13 | 75 | 108 | 170 | 3.56e-15 | 72.4 |
Msa0246580 | MtrunA17_Chr6g0473981 | 33.071 | 127 | 85 | 0 | 3 | 129 | 38 | 164 | 3.81e-15 | 72.4 |
Msa0246580 | MtrunA17_Chr5g0438801 | 54.386 | 57 | 26 | 0 | 19 | 75 | 51 | 107 | 4.35e-15 | 72.8 |
Msa0246580 | MtrunA17_Chr5g0412641 | 50.794 | 63 | 29 | 1 | 19 | 79 | 46 | 108 | 5.63e-15 | 73.2 |
Msa0246580 | MtrunA17_Chr5g0438831 | 52.632 | 57 | 27 | 0 | 19 | 75 | 46 | 102 | 7.36e-15 | 72.0 |
Msa0246580 | MtrunA17_Chr1g0184081 | 51.667 | 60 | 28 | 1 | 19 | 77 | 21 | 80 | 8.17e-15 | 69.3 |
Msa0246580 | MtrunA17_Chr4g0044871 | 52.632 | 57 | 27 | 0 | 19 | 75 | 96 | 152 | 8.85e-15 | 70.9 |
Msa0246580 | MtrunA17_Chr4g0044911 | 52.632 | 57 | 27 | 0 | 19 | 75 | 96 | 152 | 1.05e-14 | 70.9 |
Msa0246580 | MtrunA17_Chr6g0473961 | 33.071 | 127 | 85 | 0 | 3 | 129 | 38 | 164 | 1.13e-14 | 70.5 |
Msa0246580 | MtrunA17_Chr3g0114761 | 44.915 | 118 | 43 | 4 | 1 | 102 | 1 | 112 | 1.17e-14 | 70.5 |
Msa0246580 | MtrunA17_Chr6g0474001 | 32.283 | 127 | 86 | 0 | 3 | 129 | 38 | 164 | 1.60e-14 | 70.9 |
Msa0246580 | MtrunA17_Chr4g0044901 | 52.632 | 57 | 27 | 0 | 19 | 75 | 96 | 152 | 1.70e-14 | 70.1 |
Msa0246580 | MtrunA17_Chr8g0383591 | 43.243 | 74 | 42 | 0 | 19 | 92 | 145 | 218 | 1.83e-14 | 71.2 |
Msa0246580 | MtrunA17_Chr5g0437671 | 45.833 | 72 | 35 | 1 | 19 | 90 | 85 | 152 | 1.90e-14 | 71.6 |
Msa0246580 | MtrunA17_Chr7g0265851 | 50.847 | 59 | 29 | 0 | 18 | 76 | 23 | 81 | 1.96e-14 | 69.7 |
Msa0246580 | MtrunA17_Chr1g0203861 | 44.595 | 74 | 41 | 0 | 1 | 74 | 26 | 99 | 2.39e-14 | 69.3 |
Msa0246580 | MtrunA17_Chr8g0375031 | 51.786 | 56 | 27 | 0 | 19 | 74 | 125 | 180 | 2.42e-14 | 69.7 |
Msa0246580 | MtrunA17_Chr2g0283171 | 50.820 | 61 | 27 | 2 | 19 | 77 | 63 | 122 | 4.13e-14 | 67.8 |
Msa0246580 | MtrunA17_Chr2g0283181 | 48.571 | 70 | 31 | 2 | 7 | 75 | 141 | 206 | 4.79e-14 | 69.7 |
Msa0246580 | MtrunA17_Chr1g0184061 | 44.872 | 78 | 39 | 2 | 1 | 74 | 56 | 133 | 4.80e-14 | 68.9 |
Msa0246580 | MtrunA17_Chr2g0286161 | 50.000 | 56 | 28 | 0 | 19 | 74 | 50 | 105 | 5.30e-14 | 69.7 |
Msa0246580 | MtrunA17_Chr4g0066931 | 44.444 | 63 | 35 | 0 | 12 | 74 | 46 | 108 | 6.66e-14 | 69.7 |
Msa0246580 | MtrunA17_Chr8g0335321 | 49.153 | 59 | 29 | 1 | 19 | 76 | 96 | 154 | 7.55e-14 | 68.2 |
Msa0246580 | MtrunA17_Chr7g0257911 | 51.724 | 58 | 28 | 0 | 19 | 76 | 31 | 88 | 9.37e-14 | 68.9 |
Msa0246580 | MtrunA17_Chr5g0396171 | 53.571 | 56 | 26 | 0 | 21 | 76 | 26 | 81 | 9.43e-14 | 65.1 |
Msa0246580 | MtrunA17_Chr2g0321071 | 39.773 | 88 | 51 | 2 | 18 | 103 | 46 | 133 | 1.10e-13 | 67.8 |
Msa0246580 | MtrunA17_Chr2g0297331 | 51.667 | 60 | 28 | 1 | 19 | 77 | 14 | 73 | 1.22e-13 | 65.9 |
Msa0246580 | MtrunA17_Chr6g0473931 | 36.893 | 103 | 65 | 0 | 3 | 105 | 17 | 119 | 1.37e-13 | 67.0 |
Msa0246580 | MtrunA17_Chr1g0158971 | 38.824 | 85 | 52 | 0 | 19 | 103 | 115 | 199 | 1.49e-13 | 68.9 |
Msa0246580 | MtrunA17_Chr4g0026931 | 43.478 | 69 | 38 | 1 | 10 | 77 | 122 | 190 | 1.53e-13 | 68.2 |
Msa0246580 | MtrunA17_Chr6g0473781 | 34.951 | 103 | 67 | 0 | 3 | 105 | 41 | 143 | 1.65e-13 | 67.4 |
Msa0246580 | MtrunA17_Chr6g0473741 | 33.981 | 103 | 68 | 0 | 3 | 105 | 50 | 152 | 1.65e-13 | 67.4 |
Msa0246580 | MtrunA17_Chr5g0437371 | 51.786 | 56 | 27 | 0 | 19 | 74 | 66 | 121 | 1.84e-13 | 68.6 |
Msa0246580 | MtrunA17_Chr4g0026881 | 42.647 | 68 | 38 | 1 | 11 | 77 | 89 | 156 | 1.89e-13 | 67.4 |
Msa0246580 | MtrunA17_Chr5g0432821 | 37.755 | 98 | 50 | 1 | 9 | 106 | 114 | 200 | 1.97e-13 | 67.8 |
Msa0246580 | MtrunA17_Chr7g0250731 | 49.153 | 59 | 29 | 1 | 19 | 76 | 61 | 119 | 2.20e-13 | 66.6 |
Msa0246580 | MtrunA17_Chr5g0396191 | 57.895 | 57 | 24 | 0 | 19 | 75 | 11 | 67 | 2.77e-13 | 66.2 |
Msa0246580 | MtrunA17_Chr7g0250721 | 49.153 | 59 | 29 | 1 | 19 | 76 | 61 | 119 | 2.97e-13 | 66.2 |
Msa0246580 | MtrunA17_Chr6g0473971 | 43.056 | 72 | 41 | 0 | 3 | 74 | 38 | 109 | 2.97e-13 | 67.0 |
Msa0246580 | MtrunA17_Chr5g0396741 | 46.591 | 88 | 45 | 1 | 11 | 96 | 109 | 196 | 3.49e-13 | 67.8 |
Msa0246580 | MtrunA17_Chr7g0252381 | 50.000 | 56 | 28 | 0 | 19 | 74 | 42 | 97 | 3.52e-13 | 67.4 |
Msa0246580 | MtrunA17_Chr6g0473941 | 44.444 | 72 | 40 | 0 | 3 | 74 | 17 | 88 | 4.82e-13 | 65.9 |
Msa0246580 | MtrunA17_Chr3g0126321 | 43.750 | 80 | 43 | 1 | 19 | 96 | 113 | 192 | 5.26e-13 | 67.4 |
Msa0246580 | MtrunA17_Chr7g0250711 | 49.153 | 59 | 29 | 1 | 19 | 76 | 60 | 118 | 5.77e-13 | 65.5 |
Msa0246580 | MtrunA17_Chr7g0261151 | 50.820 | 61 | 27 | 2 | 19 | 77 | 20 | 79 | 6.15e-13 | 63.9 |
Msa0246580 | MtrunA17_Chr6g0473881 | 43.056 | 72 | 41 | 0 | 3 | 74 | 94 | 165 | 7.41e-13 | 66.6 |
Msa0246580 | MtrunA17_Chr7g0261101 | 50.820 | 61 | 27 | 2 | 19 | 77 | 20 | 79 | 7.59e-13 | 63.9 |
Msa0246580 | MtrunA17_Chr5g0424051 | 62.069 | 58 | 21 | 1 | 19 | 75 | 96 | 153 | 7.99e-13 | 66.2 |
Msa0246580 | MtrunA17_Chr1g0184011 | 54.545 | 55 | 24 | 1 | 21 | 74 | 86 | 140 | 1.11e-12 | 65.1 |
Msa0246580 | MtrunA17_Chr1g0146191 | 48.684 | 76 | 37 | 1 | 3 | 76 | 29 | 104 | 1.19e-12 | 65.5 |
Msa0246580 | MtrunA17_Chr6g0473861 | 37.500 | 88 | 55 | 0 | 18 | 105 | 62 | 149 | 1.40e-12 | 65.5 |
Msa0246580 | MtrunA17_Chr4g0055761 | 42.500 | 80 | 40 | 2 | 2 | 75 | 123 | 202 | 2.34e-12 | 64.7 |
Msa0246580 | MtrunA17_Chr1g0186681 | 38.462 | 78 | 46 | 1 | 1 | 76 | 1 | 78 | 2.49e-12 | 62.0 |
Msa0246580 | MtrunA17_Chr1g0184031 | 52.542 | 59 | 27 | 1 | 17 | 74 | 82 | 140 | 3.57e-12 | 63.5 |
Msa0246580 | MtrunA17_Chr5g0398091 | 35.577 | 104 | 61 | 1 | 3 | 100 | 38 | 141 | 4.29e-12 | 63.5 |
Msa0246580 | MtrunA17_Chr1g0189941 | 44.643 | 56 | 31 | 0 | 19 | 74 | 24 | 79 | 4.40e-12 | 62.4 |
Msa0246580 | MtrunA17_Chr5g0398061 | 35.577 | 104 | 61 | 1 | 3 | 100 | 33 | 136 | 5.32e-12 | 63.2 |
Msa0246580 | MtrunA17_Chr6g0473771 | 41.667 | 72 | 42 | 0 | 3 | 74 | 27 | 98 | 5.67e-12 | 60.8 |
Msa0246580 | MtrunA17_Chr6g0486711 | 44.578 | 83 | 46 | 0 | 18 | 100 | 48 | 130 | 5.73e-12 | 63.2 |
Msa0246580 | MtrunA17_Chr1g0149331 | 54.386 | 57 | 26 | 0 | 19 | 75 | 7 | 63 | 9.47e-12 | 62.0 |
Msa0246580 | MtrunA17_Chr7g0217991 | 42.647 | 68 | 39 | 0 | 7 | 74 | 30 | 97 | 1.27e-11 | 63.5 |
Msa0246580 | MtrunA17_Chr5g0398081 | 34.615 | 104 | 62 | 1 | 3 | 100 | 33 | 136 | 1.37e-11 | 62.0 |
Msa0246580 | MtrunA17_Chr8g0387801 | 48.214 | 56 | 29 | 0 | 19 | 74 | 107 | 162 | 1.40e-11 | 62.8 |
Msa0246580 | MtrunA17_Chr8g0378811 | 36.842 | 95 | 52 | 2 | 3 | 89 | 37 | 131 | 1.46e-11 | 62.4 |
Msa0246580 | MtrunA17_Chr7g0261181 | 55.000 | 60 | 26 | 1 | 19 | 77 | 13 | 72 | 1.52e-11 | 60.1 |
Msa0246580 | MtrunA17_Chr1g0183961 | 53.125 | 64 | 29 | 1 | 15 | 77 | 23 | 86 | 1.75e-11 | 60.5 |
Msa0246580 | MtrunA17_Chr1g0184071 | 52.727 | 55 | 25 | 1 | 21 | 74 | 71 | 125 | 2.30e-11 | 60.5 |
Msa0246580 | MtrunA17_Chr1g0200931 | 41.429 | 70 | 38 | 2 | 8 | 74 | 10 | 79 | 2.50e-11 | 59.7 |
Msa0246580 | MtrunA17_Chr4g0062551 | 44.828 | 58 | 32 | 0 | 19 | 76 | 53 | 110 | 2.94e-11 | 59.3 |
Msa0246580 | MtrunA17_Chr1g0170471 | 40.541 | 74 | 37 | 3 | 27 | 93 | 91 | 164 | 3.22e-11 | 60.1 |
Msa0246580 | MtrunA17_Chr3g0137831 | 54.386 | 57 | 26 | 0 | 19 | 75 | 8 | 64 | 3.32e-11 | 60.8 |
Msa0246580 | MtrunA17_Chr5g0396911 | 46.667 | 60 | 32 | 0 | 19 | 78 | 112 | 171 | 4.15e-11 | 61.6 |
Msa0246580 | MtrunA17_Chr4g0062161 | 44.828 | 58 | 32 | 0 | 19 | 76 | 53 | 110 | 5.22e-11 | 60.1 |
Msa0246580 | MtrunA17_Chr4g0057241 | 46.552 | 58 | 30 | 1 | 19 | 76 | 15 | 71 | 7.31e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0246580 | AT1G19210.1 | 71.591 | 88 | 25 | 0 | 17 | 104 | 10 | 97 | 3.01e-42 | 142 |
Msa0246580 | AT1G74930.1 | 59.130 | 115 | 45 | 1 | 1 | 113 | 1 | 115 | 3.37e-40 | 137 |
Msa0246580 | AT5G21960.1 | 70.588 | 85 | 25 | 0 | 16 | 100 | 4 | 88 | 2.74e-39 | 135 |
Msa0246580 | AT4G31060.1 | 45.902 | 122 | 62 | 3 | 4 | 122 | 12 | 132 | 6.22e-29 | 107 |
Msa0246580 | AT4G06746.1 | 53.247 | 77 | 36 | 0 | 1 | 77 | 18 | 94 | 5.44e-23 | 91.3 |
Msa0246580 | AT1G46768.3 | 60.345 | 58 | 23 | 0 | 19 | 76 | 31 | 88 | 5.99e-22 | 88.2 |
Msa0246580 | AT1G46768.1 | 60.345 | 58 | 23 | 0 | 19 | 76 | 31 | 88 | 6.32e-22 | 88.6 |
Msa0246580 | AT1G46768.2 | 60.345 | 58 | 23 | 0 | 19 | 76 | 31 | 88 | 6.32e-22 | 88.6 |
Msa0246580 | AT2G22200.1 | 61.667 | 60 | 23 | 0 | 17 | 76 | 69 | 128 | 4.00e-21 | 89.0 |
Msa0246580 | AT4G13620.1 | 44.578 | 83 | 46 | 0 | 2 | 84 | 215 | 297 | 2.24e-20 | 89.0 |
Msa0246580 | AT1G78080.1 | 52.941 | 68 | 32 | 0 | 9 | 76 | 142 | 209 | 9.51e-20 | 86.7 |
Msa0246580 | AT1G21910.1 | 59.649 | 57 | 23 | 0 | 19 | 75 | 50 | 106 | 9.65e-20 | 84.7 |
Msa0246580 | AT4G36900.1 | 61.404 | 57 | 22 | 0 | 19 | 75 | 30 | 86 | 1.35e-19 | 83.6 |
Msa0246580 | AT1G36060.1 | 58.333 | 60 | 25 | 0 | 16 | 75 | 140 | 199 | 1.44e-19 | 85.9 |
Msa0246580 | AT1G22190.1 | 55.738 | 61 | 27 | 0 | 16 | 76 | 80 | 140 | 2.06e-19 | 84.3 |
Msa0246580 | AT3G50260.1 | 53.521 | 71 | 33 | 0 | 9 | 79 | 11 | 81 | 2.12e-19 | 82.0 |
Msa0246580 | AT4G39780.1 | 58.621 | 58 | 24 | 0 | 18 | 75 | 92 | 149 | 3.28e-19 | 84.3 |
Msa0246580 | AT1G01250.1 | 41.573 | 89 | 52 | 0 | 5 | 93 | 31 | 119 | 3.56e-19 | 82.4 |
Msa0246580 | AT2G23340.1 | 54.545 | 66 | 30 | 0 | 10 | 75 | 19 | 84 | 3.93e-19 | 82.0 |
Msa0246580 | AT5G51190.1 | 54.545 | 66 | 29 | 1 | 11 | 75 | 64 | 129 | 7.03e-19 | 82.4 |
Msa0246580 | AT1G71450.1 | 59.322 | 59 | 24 | 0 | 17 | 75 | 22 | 80 | 8.07e-19 | 81.3 |
Msa0246580 | AT5G67190.1 | 59.649 | 57 | 23 | 0 | 19 | 75 | 21 | 77 | 1.02e-18 | 80.9 |
Msa0246580 | AT5G65130.1 | 46.575 | 73 | 39 | 0 | 4 | 76 | 96 | 168 | 1.05e-18 | 82.8 |
Msa0246580 | AT5G65130.2 | 46.575 | 73 | 39 | 0 | 4 | 76 | 98 | 170 | 1.16e-18 | 82.8 |
Msa0246580 | AT5G61600.1 | 61.667 | 60 | 22 | 1 | 19 | 77 | 88 | 147 | 1.84e-18 | 81.6 |
Msa0246580 | AT4G28140.1 | 56.667 | 60 | 26 | 0 | 16 | 75 | 140 | 199 | 2.79e-18 | 82.0 |
Msa0246580 | AT5G47230.1 | 54.545 | 66 | 29 | 1 | 11 | 75 | 148 | 213 | 3.07e-18 | 82.0 |
Msa0246580 | AT1G71520.1 | 50.746 | 67 | 29 | 1 | 14 | 76 | 9 | 75 | 4.84e-18 | 78.2 |
Msa0246580 | AT4G32800.1 | 38.000 | 100 | 62 | 0 | 1 | 100 | 1 | 100 | 6.67e-18 | 79.7 |
Msa0246580 | AT5G25810.1 | 45.455 | 88 | 40 | 2 | 18 | 101 | 35 | 118 | 8.79e-18 | 79.3 |
Msa0246580 | AT2G20880.1 | 54.839 | 62 | 28 | 0 | 14 | 75 | 182 | 243 | 9.58e-18 | 80.9 |
Msa0246580 | AT2G47520.1 | 46.575 | 73 | 39 | 0 | 4 | 76 | 35 | 107 | 1.54e-17 | 77.4 |
Msa0246580 | AT4G11140.1 | 36.301 | 146 | 82 | 4 | 19 | 163 | 87 | 222 | 2.11e-17 | 79.3 |
Msa0246580 | AT5G44210.1 | 59.649 | 57 | 23 | 0 | 19 | 75 | 33 | 89 | 2.89e-17 | 77.4 |
Msa0246580 | AT3G20310.1 | 59.322 | 59 | 24 | 0 | 19 | 77 | 27 | 85 | 3.39e-17 | 78.2 |
Msa0246580 | AT2G35700.1 | 56.140 | 57 | 25 | 0 | 19 | 75 | 45 | 101 | 5.88e-17 | 76.6 |
Msa0246580 | AT5G25390.2 | 55.000 | 60 | 27 | 0 | 16 | 75 | 4 | 63 | 6.03e-17 | 76.3 |
Msa0246580 | AT2G33710.2 | 52.174 | 69 | 31 | 1 | 9 | 75 | 58 | 126 | 7.97e-17 | 77.0 |
Msa0246580 | AT2G33710.1 | 52.174 | 69 | 31 | 1 | 9 | 75 | 58 | 126 | 8.62e-17 | 76.6 |
Msa0246580 | AT1G03800.1 | 50.000 | 64 | 32 | 0 | 12 | 75 | 46 | 109 | 9.34e-17 | 77.0 |
Msa0246580 | AT1G50640.1 | 59.322 | 59 | 24 | 0 | 19 | 77 | 28 | 86 | 9.82e-17 | 76.6 |
Msa0246580 | AT3G15210.1 | 56.140 | 57 | 25 | 0 | 19 | 75 | 25 | 81 | 1.27e-16 | 76.3 |
Msa0246580 | AT5G11590.1 | 42.857 | 84 | 48 | 0 | 18 | 101 | 50 | 133 | 1.35e-16 | 76.3 |
Msa0246580 | AT5G07580.1 | 53.731 | 67 | 30 | 1 | 12 | 77 | 103 | 169 | 1.68e-16 | 75.5 |
Msa0246580 | AT2G44940.1 | 46.250 | 80 | 32 | 1 | 19 | 87 | 100 | 179 | 1.77e-16 | 77.0 |
Msa0246580 | AT3G16280.1 | 54.237 | 59 | 27 | 0 | 18 | 76 | 60 | 118 | 1.88e-16 | 75.9 |
Msa0246580 | AT1G22810.1 | 53.226 | 62 | 27 | 1 | 17 | 76 | 12 | 73 | 1.91e-16 | 73.9 |
Msa0246580 | AT1G15360.1 | 54.386 | 57 | 26 | 0 | 19 | 75 | 7 | 63 | 2.80e-16 | 74.7 |
Msa0246580 | AT1G15360.2 | 54.386 | 57 | 26 | 0 | 19 | 75 | 7 | 63 | 2.80e-16 | 74.7 |
Msa0246580 | AT3G16280.2 | 54.237 | 59 | 27 | 0 | 18 | 76 | 78 | 136 | 3.03e-16 | 75.9 |
Msa0246580 | AT4G16750.1 | 46.575 | 73 | 37 | 1 | 3 | 75 | 26 | 96 | 3.48e-16 | 73.9 |
Msa0246580 | AT3G16770.1 | 43.243 | 74 | 42 | 0 | 3 | 76 | 63 | 136 | 8.55e-16 | 74.3 |
Msa0246580 | AT5G25190.1 | 52.381 | 63 | 30 | 0 | 19 | 81 | 8 | 70 | 8.63e-16 | 73.2 |
Msa0246580 | AT5G43410.1 | 46.154 | 65 | 34 | 1 | 14 | 77 | 10 | 74 | 1.51e-15 | 71.2 |
Msa0246580 | AT3G23230.1 | 52.381 | 63 | 29 | 1 | 16 | 77 | 17 | 79 | 1.91e-15 | 71.2 |
Msa0246580 | AT1G28370.1 | 47.297 | 74 | 37 | 1 | 2 | 75 | 5 | 76 | 2.26e-15 | 71.6 |
Msa0246580 | AT2G25820.1 | 53.448 | 58 | 27 | 0 | 18 | 75 | 25 | 82 | 2.39e-15 | 72.8 |
Msa0246580 | AT4G17490.1 | 49.254 | 67 | 33 | 1 | 10 | 75 | 128 | 194 | 2.52e-15 | 73.6 |
Msa0246580 | AT1G72360.3 | 41.333 | 75 | 44 | 0 | 3 | 77 | 58 | 132 | 2.75e-15 | 73.2 |
Msa0246580 | AT4G25470.1 | 39.796 | 98 | 59 | 0 | 3 | 100 | 35 | 132 | 2.93e-15 | 72.4 |
Msa0246580 | AT5G18560.1 | 42.857 | 70 | 40 | 0 | 12 | 81 | 48 | 117 | 2.98e-15 | 73.9 |
Msa0246580 | AT1G72360.1 | 43.939 | 66 | 37 | 0 | 12 | 77 | 18 | 83 | 3.27e-15 | 72.0 |
Msa0246580 | AT1G28370.2 | 47.297 | 74 | 37 | 1 | 2 | 75 | 43 | 114 | 4.10e-15 | 71.6 |
Msa0246580 | AT3G60490.1 | 54.386 | 57 | 26 | 0 | 19 | 75 | 71 | 127 | 4.32e-15 | 72.8 |
Msa0246580 | AT1G28360.1 | 53.448 | 58 | 27 | 0 | 19 | 76 | 12 | 69 | 4.62e-15 | 71.2 |
Msa0246580 | AT2G44840.1 | 45.946 | 74 | 39 | 1 | 4 | 76 | 77 | 150 | 5.20e-15 | 72.0 |
Msa0246580 | AT4G25490.1 | 45.833 | 72 | 39 | 0 | 3 | 74 | 32 | 103 | 5.62e-15 | 71.6 |
Msa0246580 | AT1G72360.2 | 43.939 | 66 | 37 | 0 | 12 | 77 | 69 | 134 | 8.39e-15 | 72.0 |
Msa0246580 | AT5G13330.1 | 41.096 | 73 | 43 | 0 | 3 | 75 | 23 | 95 | 1.14e-14 | 70.9 |
Msa0246580 | AT4G27950.1 | 44.156 | 77 | 43 | 0 | 2 | 78 | 101 | 177 | 1.30e-14 | 72.0 |
Msa0246580 | AT1G12980.1 | 49.180 | 61 | 31 | 0 | 14 | 74 | 52 | 112 | 2.81e-14 | 71.2 |
Msa0246580 | AT4G25480.1 | 43.243 | 74 | 42 | 0 | 3 | 76 | 35 | 108 | 2.85e-14 | 69.7 |
Msa0246580 | AT5G61890.1 | 50.877 | 57 | 28 | 0 | 19 | 75 | 90 | 146 | 3.40e-14 | 70.1 |
Msa0246580 | AT1G77640.1 | 60.345 | 58 | 23 | 0 | 19 | 76 | 43 | 100 | 3.72e-14 | 69.7 |
Msa0246580 | AT5G25390.1 | 53.333 | 60 | 25 | 1 | 16 | 75 | 4 | 60 | 4.56e-14 | 68.6 |
Msa0246580 | AT3G57600.1 | 51.724 | 58 | 28 | 0 | 19 | 76 | 28 | 85 | 5.86e-14 | 69.7 |
Msa0246580 | AT1G12610.1 | 35.238 | 105 | 68 | 0 | 3 | 107 | 14 | 118 | 5.97e-14 | 68.6 |
Msa0246580 | AT1G64380.1 | 52.439 | 82 | 36 | 2 | 18 | 96 | 135 | 216 | 6.43e-14 | 70.1 |
Msa0246580 | AT3G11020.1 | 54.386 | 57 | 26 | 0 | 19 | 75 | 78 | 134 | 6.62e-14 | 70.1 |
Msa0246580 | AT5G51990.1 | 36.275 | 102 | 65 | 0 | 3 | 104 | 38 | 139 | 7.28e-14 | 68.6 |
Msa0246580 | AT1G33760.1 | 61.404 | 57 | 22 | 0 | 19 | 75 | 20 | 76 | 9.07e-14 | 67.8 |
Msa0246580 | AT2G46310.1 | 47.541 | 61 | 32 | 0 | 19 | 79 | 99 | 159 | 1.16e-13 | 68.9 |
Msa0246580 | AT5G13910.1 | 50.000 | 56 | 28 | 0 | 19 | 74 | 20 | 75 | 1.23e-13 | 67.8 |
Msa0246580 | AT1G28160.1 | 41.975 | 81 | 45 | 1 | 19 | 99 | 39 | 117 | 1.43e-13 | 68.2 |
Msa0246580 | AT1G24590.1 | 51.786 | 56 | 27 | 0 | 19 | 74 | 58 | 113 | 1.55e-13 | 68.9 |
Msa0246580 | AT3G61630.1 | 51.667 | 60 | 29 | 0 | 19 | 78 | 105 | 164 | 1.58e-13 | 68.9 |
Msa0246580 | AT5G05410.1 | 52.632 | 57 | 27 | 0 | 19 | 75 | 79 | 135 | 1.79e-13 | 68.9 |
Msa0246580 | AT5G05410.2 | 52.632 | 57 | 27 | 0 | 19 | 75 | 79 | 135 | 1.80e-13 | 68.6 |
Msa0246580 | AT2G40340.2 | 47.368 | 57 | 30 | 0 | 19 | 75 | 14 | 70 | 1.89e-13 | 68.6 |
Msa0246580 | AT2G40340.5 | 47.368 | 57 | 30 | 0 | 19 | 75 | 14 | 70 | 1.89e-13 | 68.6 |
Msa0246580 | AT2G40340.4 | 47.368 | 57 | 30 | 0 | 19 | 75 | 14 | 70 | 1.89e-13 | 68.6 |
Msa0246580 | AT5G53290.1 | 53.571 | 56 | 26 | 0 | 19 | 74 | 125 | 180 | 1.93e-13 | 68.9 |
Msa0246580 | AT1G75490.1 | 48.333 | 60 | 31 | 0 | 16 | 75 | 39 | 98 | 2.40e-13 | 67.0 |
Msa0246580 | AT1G63030.2 | 32.558 | 129 | 72 | 1 | 3 | 131 | 14 | 127 | 2.56e-13 | 66.2 |
Msa0246580 | AT1G63030.1 | 32.558 | 129 | 72 | 1 | 3 | 131 | 14 | 127 | 2.56e-13 | 66.2 |
Msa0246580 | AT5G18450.1 | 53.571 | 56 | 26 | 0 | 19 | 74 | 34 | 89 | 2.62e-13 | 68.2 |
Msa0246580 | AT2G36450.1 | 47.222 | 72 | 37 | 1 | 18 | 88 | 14 | 85 | 2.70e-13 | 66.2 |
Msa0246580 | AT4G23750.2 | 51.667 | 60 | 29 | 0 | 19 | 78 | 122 | 181 | 3.56e-13 | 68.2 |
Msa0246580 | AT4G23750.1 | 51.667 | 60 | 29 | 0 | 19 | 78 | 122 | 181 | 3.56e-13 | 68.2 |
Msa0246580 | AT4G17500.1 | 44.595 | 74 | 40 | 1 | 3 | 75 | 132 | 205 | 4.27e-13 | 67.4 |
Msa0246580 | AT2G40340.3 | 47.368 | 57 | 30 | 0 | 19 | 75 | 72 | 128 | 4.50e-13 | 67.4 |
Msa0246580 | AT2G40340.1 | 47.368 | 57 | 30 | 0 | 19 | 75 | 72 | 128 | 4.94e-13 | 67.8 |
Msa0246580 | AT2G40340.6 | 47.368 | 57 | 30 | 0 | 19 | 75 | 79 | 135 | 5.72e-13 | 67.4 |
Msa0246580 | AT5G47220.1 | 51.724 | 58 | 27 | 1 | 19 | 75 | 117 | 174 | 9.99e-13 | 65.9 |
Msa0246580 | AT3G23240.1 | 46.377 | 69 | 34 | 2 | 8 | 74 | 71 | 138 | 1.23e-12 | 65.1 |
Msa0246580 | AT1G44830.1 | 62.069 | 58 | 21 | 1 | 19 | 75 | 35 | 92 | 1.67e-12 | 64.7 |
Msa0246580 | AT2G31230.1 | 44.737 | 76 | 39 | 2 | 2 | 75 | 69 | 143 | 2.10e-12 | 65.1 |
Msa0246580 | AT1G12890.1 | 40.789 | 76 | 43 | 1 | 1 | 74 | 1 | 76 | 4.02e-12 | 63.9 |
Msa0246580 | AT5G19790.1 | 42.647 | 68 | 39 | 0 | 13 | 80 | 16 | 83 | 5.52e-12 | 63.9 |
Msa0246580 | AT5G50080.2 | 50.769 | 65 | 32 | 0 | 13 | 77 | 80 | 144 | 1.16e-11 | 62.8 |
Msa0246580 | AT5G11190.1 | 54.386 | 57 | 26 | 0 | 19 | 75 | 7 | 63 | 1.26e-11 | 62.0 |
Msa0246580 | AT5G50080.1 | 50.769 | 65 | 32 | 0 | 13 | 77 | 71 | 135 | 1.47e-11 | 62.4 |
Msa0246580 | AT5G64750.1 | 38.000 | 100 | 54 | 2 | 25 | 116 | 191 | 290 | 2.64e-11 | 62.8 |
Msa0246580 | AT1G43160.1 | 54.237 | 59 | 27 | 0 | 19 | 77 | 61 | 119 | 4.41e-11 | 60.5 |
Msa0246580 | AT1G77200.1 | 49.315 | 73 | 34 | 2 | 3 | 75 | 30 | 99 | 8.77e-11 | 60.5 |
Find 64 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCGGGTTACACTATGTTTC+CGG | 0.242352 | 2_2:-27933054 | Msa0246580:CDS |
TAATACAAGATTCATTCTTA+TGG | 0.242683 | 2_2:-27932950 | Msa0246580:CDS |
GGTTGAAACACCGTCTTCTT+TGG | 0.261482 | 2_2:-27933189 | Msa0246580:CDS |
TGTTTCAGTCGTAGTATTAA+TGG | 0.271929 | 2_2:+27933274 | None:intergenic |
GAGGAGTAAGGAAGAGGAAA+TGG | 0.289841 | 2_2:-27933553 | Msa0246580:CDS |
TGCTCTGAATACTCATTAAC+AGG | 0.309991 | 2_2:+27933299 | None:intergenic |
CAAACAGCCGCCAAAGAATA+TGG | 0.317582 | 2_2:-27933502 | Msa0246580:CDS |
AGGAGTAAGGAAGAGGAAAT+GGG | 0.326796 | 2_2:-27933552 | Msa0246580:CDS |
AAGAACCTAACCATATTCTT+TGG | 0.340126 | 2_2:+27933492 | None:intergenic |
GCAATGTCCGGAGGATCATT+AGG | 0.350133 | 2_2:+27933389 | None:intergenic |
CATATTCTTTGGCGGCTGTT+TGG | 0.355180 | 2_2:+27933503 | None:intergenic |
AGTGATTCTTCATTGTTTAG+AGG | 0.356804 | 2_2:-27933572 | Msa0246580:CDS |
TCGGGTTACACTATGTTTCC+GGG | 0.358617 | 2_2:-27933053 | Msa0246580:CDS |
AATGATCCTCCGGACATTGC+CGG | 0.391822 | 2_2:-27933386 | Msa0246580:CDS |
TAAGCAAAATTTGTCAAATC+CGG | 0.392858 | 2_2:+27932999 | None:intergenic |
GACCTTCCTCCGGCAATGTC+CGG | 0.419358 | 2_2:+27933377 | None:intergenic |
CTTCATTGTTTAGAGGAGTA+AGG | 0.435835 | 2_2:-27933565 | Msa0246580:CDS |
AAATGCACGTGCCGCCTTCA+CGG | 0.463643 | 2_2:+27933460 | None:intergenic |
CAATGTCCGGAGGATCATTA+GGG | 0.463795 | 2_2:+27933390 | None:intergenic |
GATAGTGATATAAGAGATAA+CGG | 0.470135 | 2_2:-27933107 | Msa0246580:CDS |
TTGACCCGAATTAGCAAAAC+GGG | 0.473559 | 2_2:+27933322 | None:intergenic |
TAATTTCCCTAATGATCCTC+CGG | 0.474714 | 2_2:-27933396 | Msa0246580:CDS |
TGTTTAGAGGAGTAAGGAAG+AGG | 0.484799 | 2_2:-27933559 | Msa0246580:CDS |
GGAGTAAGGAAGAGGAAATG+GGG | 0.486244 | 2_2:-27933551 | Msa0246580:CDS |
GGGAACGACATTCTTGCCTA+TGG | 0.495841 | 2_2:-27933237 | Msa0246580:CDS |
TGAAACACCGTCTTCTTTGG+AGG | 0.503837 | 2_2:-27933186 | Msa0246580:CDS |
AACCTAACCATATTCTTTGG+CGG | 0.508177 | 2_2:+27933495 | None:intergenic |
ATGTGTCATGGACCTTCCTC+CGG | 0.508346 | 2_2:+27933367 | None:intergenic |
ACCGTCACATCGGATAGAGC+AGG | 0.524258 | 2_2:+27933137 | None:intergenic |
GAGTAAGGAAGAGGAAATGG+GGG | 0.525108 | 2_2:-27933550 | Msa0246580:CDS |
AAACATAGTGTAACCCGATC+CGG | 0.531502 | 2_2:+27933058 | None:intergenic |
ATCCGATGTGACGGTTCAGA+TGG | 0.536859 | 2_2:-27933129 | Msa0246580:CDS |
CTACGACTGAAACACCGTCT+TGG | 0.537352 | 2_2:-27933265 | Msa0246580:CDS |
GAAACACCGTCTTCTTTGGA+GGG | 0.539817 | 2_2:-27933185 | Msa0246580:CDS |
TTCTTACGACTCTGCCGTGA+AGG | 0.540440 | 2_2:-27933474 | Msa0246580:CDS |
GACTGAAACACCGTCTTGGT+CGG | 0.544624 | 2_2:-27933261 | Msa0246580:CDS |
CCCTGCTCTATCCGATGTGA+CGG | 0.545464 | 2_2:-27933138 | Msa0246580:CDS |
CTCCGGACATTGCCGGAGGA+AGG | 0.547543 | 2_2:-27933379 | Msa0246580:CDS |
CTTAATCTCAAAATGTGTCA+TGG | 0.551306 | 2_2:+27933355 | None:intergenic |
TATGAAGAAGAGAACATGGA+TGG | 0.552983 | 2_2:-27932978 | Msa0246580:CDS |
TGTTTCAACATGTTATACTC+AGG | 0.558734 | 2_2:-27933210 | Msa0246580:CDS |
AGCCGCCAAAGAATATGGTT+AGG | 0.567194 | 2_2:-27933497 | Msa0246580:CDS |
GTTGACCCGAATTAGCAAAA+CGG | 0.574997 | 2_2:+27933321 | None:intergenic |
TGCTTATGAAGAAGAGAACA+TGG | 0.575685 | 2_2:-27932982 | Msa0246580:CDS |
AAACACCGTCTTCTTTGGAG+GGG | 0.577727 | 2_2:-27933184 | Msa0246580:CDS |
ATAGTGATATAAGAGATAAC+GGG | 0.583778 | 2_2:-27933106 | Msa0246580:CDS |
GAAACACCGTCTTGGTCGGA+GGG | 0.585958 | 2_2:-27933257 | Msa0246580:CDS |
ATTAGCAAAACGGGCTGCCG+CGG | 0.586060 | 2_2:+27933331 | None:intergenic |
ACGACATTCTTGCCTATGGA+TGG | 0.590741 | 2_2:-27933233 | Msa0246580:CDS |
CCGTCACATCGGATAGAGCA+GGG | 0.598297 | 2_2:+27933138 | None:intergenic |
TGAAACACCGTCTTGGTCGG+AGG | 0.604324 | 2_2:-27933258 | Msa0246580:CDS |
CATGTTGAAACACCATCCAT+AGG | 0.614932 | 2_2:+27933221 | None:intergenic |
CTTCCTCCGGCAATGTCCGG+AGG | 0.618457 | 2_2:+27933380 | None:intergenic |
GTCGTCCCCTCCAAAGAAGA+CGG | 0.618877 | 2_2:+27933179 | None:intergenic |
CGGGTTACACTATGTTTCCG+GGG | 0.622055 | 2_2:-27933052 | Msa0246580:CDS |
ATGAAGAAGAGAACATGGAT+GGG | 0.628187 | 2_2:-27932977 | Msa0246580:CDS |
CACATCGGATAGAGCAGGGG+AGG | 0.632629 | 2_2:+27933142 | None:intergenic |
GGCGGCACGTGCATTTGACG+CGG | 0.637679 | 2_2:-27933453 | Msa0246580:CDS |
ATCCATCTGAACCGTCACAT+CGG | 0.638578 | 2_2:+27933127 | None:intergenic |
GTCGTTCCCTCCGACCAAGA+CGG | 0.664295 | 2_2:+27933251 | None:intergenic |
TTACGACTCTGCCGTGAAGG+CGG | 0.666551 | 2_2:-27933471 | Msa0246580:CDS |
GATCCTCCGGACATTGCCGG+AGG | 0.690140 | 2_2:-27933383 | Msa0246580:CDS |
CGTCACATCGGATAGAGCAG+GGG | 0.690978 | 2_2:+27933139 | None:intergenic |
AAATATGGTGAAATCCAACG+CGG | 0.824835 | 2_2:-27933615 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATACAAGATTCATTCTTA+TGG | - | chr2_2:27933602-27933621 | Msa0246580:CDS | 20.0% |
! | GATAGTGATATAAGAGATAA+CGG | - | chr2_2:27933445-27933464 | Msa0246580:CDS | 25.0% |
! | ATAGTGATATAAGAGATAAC+GGG | - | chr2_2:27933446-27933465 | Msa0246580:CDS | 25.0% |
! | TAAGCAAAATTTGTCAAATC+CGG | + | chr2_2:27933556-27933575 | None:intergenic | 25.0% |
AGTGATTCTTCATTGTTTAG+AGG | - | chr2_2:27932980-27932999 | Msa0246580:CDS | 30.0% | |
AAGAACCTAACCATATTCTT+TGG | + | chr2_2:27933063-27933082 | None:intergenic | 30.0% | |
CTTAATCTCAAAATGTGTCA+TGG | + | chr2_2:27933200-27933219 | None:intergenic | 30.0% | |
TGTTTCAGTCGTAGTATTAA+TGG | + | chr2_2:27933281-27933300 | None:intergenic | 30.0% | |
TGTTTCAACATGTTATACTC+AGG | - | chr2_2:27933342-27933361 | Msa0246580:CDS | 30.0% | |
CTTCATTGTTTAGAGGAGTA+AGG | - | chr2_2:27932987-27933006 | Msa0246580:CDS | 35.0% | |
AACCTAACCATATTCTTTGG+CGG | + | chr2_2:27933060-27933079 | None:intergenic | 35.0% | |
TAATTTCCCTAATGATCCTC+CGG | - | chr2_2:27933156-27933175 | Msa0246580:CDS | 35.0% | |
!!! | ACATTTTGAGATTAAGACCG+CGG | - | chr2_2:27933204-27933223 | Msa0246580:CDS | 35.0% |
! | TGCTCTGAATACTCATTAAC+AGG | + | chr2_2:27933256-27933275 | None:intergenic | 35.0% |
!!! | AGTGACTTGTTTTCAGAAAC+CGG | - | chr2_2:27933475-27933494 | Msa0246580:CDS | 35.0% |
TGCTTATGAAGAAGAGAACA+TGG | - | chr2_2:27933570-27933589 | Msa0246580:CDS | 35.0% | |
TATGAAGAAGAGAACATGGA+TGG | - | chr2_2:27933574-27933593 | Msa0246580:CDS | 35.0% | |
ATGAAGAAGAGAACATGGAT+GGG | - | chr2_2:27933575-27933594 | Msa0246580:CDS | 35.0% | |
TGTTTAGAGGAGTAAGGAAG+AGG | - | chr2_2:27932993-27933012 | Msa0246580:CDS | 40.0% | |
AGGAGTAAGGAAGAGGAAAT+GGG | - | chr2_2:27933000-27933019 | Msa0246580:CDS | 40.0% | |
TTGACCCGAATTAGCAAAAC+GGG | + | chr2_2:27933233-27933252 | None:intergenic | 40.0% | |
GTTGACCCGAATTAGCAAAA+CGG | + | chr2_2:27933234-27933253 | None:intergenic | 40.0% | |
CATGTTGAAACACCATCCAT+AGG | + | chr2_2:27933334-27933353 | None:intergenic | 40.0% | |
!! | CTTGTTTTCAGAAACCGGAT+CGG | - | chr2_2:27933480-27933499 | Msa0246580:CDS | 40.0% |
! | TTGTTTTCAGAAACCGGATC+GGG | - | chr2_2:27933481-27933500 | Msa0246580:CDS | 40.0% |
AAACATAGTGTAACCCGATC+CGG | + | chr2_2:27933497-27933516 | None:intergenic | 40.0% | |
ATCGGGTTACACTATGTTTC+CGG | - | chr2_2:27933498-27933517 | Msa0246580:CDS | 40.0% | |
CCACAAAAATCATCAAACCC+CGG | + | chr2_2:27933520-27933539 | None:intergenic | 40.0% | |
ATCCAACGCGGAAAAAACTG+CGG | - | chr2_2:27932949-27932968 | Msa0246580:CDS | 45.0% | |
GAGGAGTAAGGAAGAGGAAA+TGG | - | chr2_2:27932999-27933018 | Msa0246580:CDS | 45.0% | |
GGAGTAAGGAAGAGGAAATG+GGG | - | chr2_2:27933001-27933020 | Msa0246580:CDS | 45.0% | |
GAGTAAGGAAGAGGAAATGG+GGG | - | chr2_2:27933002-27933021 | Msa0246580:CDS | 45.0% | |
GAAATGGGGGAAATACGTGT+CGG | - | chr2_2:27933015-27933034 | Msa0246580:CDS | 45.0% | |
CATATTCTTTGGCGGCTGTT+TGG | + | chr2_2:27933052-27933071 | None:intergenic | 45.0% | |
CAAACAGCCGCCAAAGAATA+TGG | - | chr2_2:27933050-27933069 | Msa0246580:CDS | 45.0% | |
AGCCGCCAAAGAATATGGTT+AGG | - | chr2_2:27933055-27933074 | Msa0246580:CDS | 45.0% | |
! | ATGTTTTGCTTACGTGGCAG+TGG | - | chr2_2:27933124-27933143 | Msa0246580:CDS | 45.0% |
CAATGTCCGGAGGATCATTA+GGG | + | chr2_2:27933165-27933184 | None:intergenic | 45.0% | |
ACGACATTCTTGCCTATGGA+TGG | - | chr2_2:27933319-27933338 | Msa0246580:CDS | 45.0% | |
GGTTGAAACACCGTCTTCTT+TGG | - | chr2_2:27933363-27933382 | Msa0246580:CDS | 45.0% | |
TGAAACACCGTCTTCTTTGG+AGG | - | chr2_2:27933366-27933385 | Msa0246580:CDS | 45.0% | |
GAAACACCGTCTTCTTTGGA+GGG | - | chr2_2:27933367-27933386 | Msa0246580:CDS | 45.0% | |
! | AAACACCGTCTTCTTTGGAG+GGG | - | chr2_2:27933368-27933387 | Msa0246580:CDS | 45.0% |
ATCCATCTGAACCGTCACAT+CGG | + | chr2_2:27933428-27933447 | None:intergenic | 45.0% | |
TCGGGTTACACTATGTTTCC+GGG | - | chr2_2:27933499-27933518 | Msa0246580:CDS | 45.0% | |
!! | CCGGGGTTTGATGATTTTTG+TGG | - | chr2_2:27933517-27933536 | Msa0246580:CDS | 45.0% |
! | TTGTGGCGATTTTTACGTGC+CGG | - | chr2_2:27933534-27933553 | Msa0246580:CDS | 45.0% |
TTCTTACGACTCTGCCGTGA+AGG | - | chr2_2:27933078-27933097 | Msa0246580:CDS | 50.0% | |
! | GCGGCTATGTTTTGCTTACG+TGG | - | chr2_2:27933118-27933137 | Msa0246580:CDS | 50.0% |
GCAATGTCCGGAGGATCATT+AGG | + | chr2_2:27933166-27933185 | None:intergenic | 50.0% | |
AATGATCCTCCGGACATTGC+CGG | - | chr2_2:27933166-27933185 | Msa0246580:CDS | 50.0% | |
ATGTGTCATGGACCTTCCTC+CGG | + | chr2_2:27933188-27933207 | None:intergenic | 50.0% | |
! | GGCAGCCCGTTTTGCTAATT+CGG | - | chr2_2:27933225-27933244 | Msa0246580:CDS | 50.0% |
! | GCAGCCCGTTTTGCTAATTC+GGG | - | chr2_2:27933226-27933245 | Msa0246580:CDS | 50.0% |
CTACGACTGAAACACCGTCT+TGG | - | chr2_2:27933287-27933306 | Msa0246580:CDS | 50.0% | |
GACTGAAACACCGTCTTGGT+CGG | - | chr2_2:27933291-27933310 | Msa0246580:CDS | 50.0% | |
GGGAACGACATTCTTGCCTA+TGG | - | chr2_2:27933315-27933334 | Msa0246580:CDS | 50.0% | |
ATCCGATGTGACGGTTCAGA+TGG | - | chr2_2:27933423-27933442 | Msa0246580:CDS | 50.0% | |
CGGGTTACACTATGTTTCCG+GGG | - | chr2_2:27933500-27933519 | Msa0246580:CDS | 50.0% | |
!!! | CACCGCAGTTTTTTCCGCGT+TGG | + | chr2_2:27932954-27932973 | None:intergenic | 55.0% |
CAACGCGGAAAAAACTGCGG+TGG | - | chr2_2:27932952-27932971 | Msa0246580:CDS | 55.0% | |
TTACGACTCTGCCGTGAAGG+CGG | - | chr2_2:27933081-27933100 | Msa0246580:CDS | 55.0% | |
AAATGCACGTGCCGCCTTCA+CGG | + | chr2_2:27933095-27933114 | None:intergenic | 55.0% | |
!! | ATTAGCAAAACGGGCTGCCG+CGG | + | chr2_2:27933224-27933243 | None:intergenic | 55.0% |
TGAAACACCGTCTTGGTCGG+AGG | - | chr2_2:27933294-27933313 | Msa0246580:CDS | 55.0% | |
GAAACACCGTCTTGGTCGGA+GGG | - | chr2_2:27933295-27933314 | Msa0246580:CDS | 55.0% | |
GTCGTCCCCTCCAAAGAAGA+CGG | + | chr2_2:27933376-27933395 | None:intergenic | 55.0% | |
CGTCACATCGGATAGAGCAG+GGG | + | chr2_2:27933416-27933435 | None:intergenic | 55.0% | |
CCGTCACATCGGATAGAGCA+GGG | + | chr2_2:27933417-27933436 | None:intergenic | 55.0% | |
CCCTGCTCTATCCGATGTGA+CGG | - | chr2_2:27933414-27933433 | Msa0246580:CDS | 55.0% | |
ACCGTCACATCGGATAGAGC+AGG | + | chr2_2:27933418-27933437 | None:intergenic | 55.0% | |
GACCTTCCTCCGGCAATGTC+CGG | + | chr2_2:27933178-27933197 | None:intergenic | 60.0% | |
GTCGTTCCCTCCGACCAAGA+CGG | + | chr2_2:27933304-27933323 | None:intergenic | 60.0% | |
CACATCGGATAGAGCAGGGG+AGG | + | chr2_2:27933413-27933432 | None:intergenic | 60.0% | |
GGCGGCACGTGCATTTGACG+CGG | - | chr2_2:27933099-27933118 | Msa0246580:CDS | 65.0% | |
GATCCTCCGGACATTGCCGG+AGG | - | chr2_2:27933169-27933188 | Msa0246580:CDS | 65.0% | |
CTTCCTCCGGCAATGTCCGG+AGG | + | chr2_2:27933175-27933194 | None:intergenic | 65.0% | |
CTCCGGACATTGCCGGAGGA+AGG | - | chr2_2:27933173-27933192 | Msa0246580:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 27932941 | 27933633 | 27932941 | ID=Msa0246580;Name=Msa0246580 |
chr2_2 | mRNA | 27932941 | 27933633 | 27932941 | ID=Msa0246580-mRNA-1;Parent=Msa0246580;Name=Msa0246580-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|230 |
chr2_2 | exon | 27932941 | 27933633 | 27932941 | ID=Msa0246580-mRNA-1:exon:10128;Parent=Msa0246580-mRNA-1 |
chr2_2 | CDS | 27932941 | 27933633 | 27932941 | ID=Msa0246580-mRNA-1:cds;Parent=Msa0246580-mRNA-1 |
Gene Sequence |
Protein sequence |