Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0248790 | XP_039689626.1 | 44.330 | 291 | 101 | 8 | 5 | 234 | 2 | 292 | 1.04e-64 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0248790 | A0A072VF30 | 46.341 | 287 | 86 | 8 | 8 | 230 | 15 | 297 | 1.07e-63 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010800 | Msa0248790 | 0.804987 | 1.658809e-49 | -8.615850e-47 |
| Msa0061500 | Msa0248790 | 0.803867 | 2.839461e-49 | -8.615850e-47 |
| Msa0152560 | Msa0248790 | 0.806333 | 8.654085e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0248790 | MtrunA17_Chr1g0158411 | 46.341 | 287 | 86 | 8 | 8 | 230 | 15 | 297 | 2.89e-67 | 221 |
| Msa0248790 | MtrunA17_Chr3g0088331 | 48.561 | 278 | 83 | 9 | 1 | 219 | 1 | 277 | 1.89e-64 | 202 |
| Msa0248790 | MtrunA17_Chr1g0158731 | 42.391 | 276 | 98 | 8 | 5 | 219 | 2 | 277 | 2.32e-58 | 188 |
| Msa0248790 | MtrunA17_Chr1g0157911 | 40.594 | 303 | 102 | 9 | 1 | 231 | 1 | 297 | 1.72e-55 | 189 |
| Msa0248790 | MtrunA17_Chr1g0158461 | 43.729 | 295 | 81 | 11 | 6 | 217 | 15 | 307 | 4.45e-53 | 174 |
| Msa0248790 | MtrunA17_Chr1g0158331 | 40.656 | 305 | 97 | 13 | 6 | 230 | 15 | 315 | 2.46e-48 | 163 |
| Msa0248790 | MtrunA17_Chr6g0467711 | 43.003 | 293 | 92 | 12 | 6 | 230 | 14 | 299 | 3.65e-47 | 166 |
| Msa0248790 | MtrunA17_Chr1g0157881 | 44.589 | 231 | 64 | 8 | 1 | 170 | 18 | 245 | 7.83e-43 | 155 |
| Msa0248790 | MtrunA17_Chr1g0157861 | 37.910 | 335 | 102 | 11 | 1 | 231 | 1 | 333 | 3.55e-41 | 150 |
| Msa0248790 | MtrunA17_Chr1g0157791 | 38.889 | 252 | 100 | 12 | 8 | 209 | 1 | 248 | 4.42e-38 | 141 |
| Msa0248790 | MtrunA17_Chr1g0158061 | 31.365 | 271 | 121 | 7 | 29 | 234 | 20 | 290 | 1.45e-33 | 123 |
| Msa0248790 | MtrunA17_Chr1g0157961 | 41.573 | 178 | 59 | 4 | 38 | 170 | 37 | 214 | 3.88e-32 | 119 |
| Msa0248790 | MtrunA17_Chr1g0157991 | 41.622 | 185 | 59 | 6 | 35 | 170 | 29 | 213 | 4.71e-32 | 124 |
| Msa0248790 | MtrunA17_Chr1g0158151 | 33.209 | 268 | 111 | 8 | 14 | 214 | 6 | 272 | 1.34e-31 | 122 |
| Msa0248790 | MtrunA17_Chr1g0158501 | 37.548 | 261 | 90 | 10 | 6 | 232 | 15 | 236 | 2.65e-30 | 114 |
| Msa0248790 | MtrunA17_Chr1g0158191 | 35.484 | 217 | 88 | 6 | 8 | 175 | 1 | 214 | 1.04e-29 | 117 |
| Msa0248790 | MtrunA17_Chr1g0158041 | 36.889 | 225 | 86 | 7 | 36 | 209 | 28 | 247 | 4.59e-29 | 115 |
| Msa0248790 | MtrunA17_Chr1g0158631 | 35.448 | 268 | 102 | 14 | 9 | 219 | 12 | 265 | 2.64e-25 | 104 |
| Msa0248790 | MtrunA17_Chr1g0158761 | 35.263 | 190 | 92 | 6 | 8 | 171 | 1 | 185 | 3.32e-24 | 101 |
| Msa0248790 | MtrunA17_Chr1g0158121 | 52.809 | 89 | 22 | 1 | 38 | 106 | 33 | 121 | 5.28e-23 | 91.3 |
| Msa0248790 | MtrunA17_Chr1g0158661 | 35.808 | 229 | 89 | 11 | 42 | 219 | 37 | 258 | 1.02e-22 | 97.1 |
| Msa0248790 | MtrunA17_Chr1g0158541 | 33.333 | 201 | 84 | 9 | 13 | 168 | 17 | 212 | 2.79e-20 | 90.1 |
| Msa0248790 | MtrunA17_Chr1g0158301 | 37.815 | 119 | 50 | 3 | 6 | 103 | 12 | 127 | 8.62e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTAAAATACACTTTAT+CGG | 0.336899 | 2_2:-33506221 | Msa0248790:CDS |
| GCTGGATAACTTACTTCATA+TGG | 0.360885 | 2_2:+33507583 | None:intergenic |
| GTAAGTTATCCAGCTTGGTT+AGG | 0.366683 | 2_2:-33507574 | Msa0248790:CDS |
| GTCAAAGTTGCGCATATTGA+TGG | 0.381122 | 2_2:-33506255 | Msa0248790:CDS |
| TCTGTAAAATACACTTTATC+GGG | 0.424002 | 2_2:-33506220 | Msa0248790:CDS |
| ATCGGATCACCGCATGTTGT+TGG | 0.442926 | 2_2:+33507808 | None:intergenic |
| ATTGCTGGAGACTTGAGTGC+TGG | 0.443025 | 2_2:-33507463 | Msa0248790:CDS |
| AGCCATGTGTATGCTATTGC+TGG | 0.445077 | 2_2:-33507478 | Msa0248790:CDS |
| ATCCTTCCTCAAAATTGTAA+TGG | 0.446842 | 2_2:-33507962 | Msa0248790:CDS |
| GGATCATTCTTAAGTCGAAA+TGG | 0.447542 | 2_2:+33507829 | None:intergenic |
| TCATTCTCGACAACACCAAC+AGG | 0.453334 | 2_2:+33507379 | None:intergenic |
| TAAGTTATCCAGCTTGGTTA+GGG | 0.502619 | 2_2:-33507573 | Msa0248790:CDS |
| ATTATATGCCCTAACCAAGC+TGG | 0.507160 | 2_2:+33507565 | None:intergenic |
| ATGAAGTAAGTTATCCAGCT+TGG | 0.529722 | 2_2:-33507579 | Msa0248790:CDS |
| ACAATTCGGTTAGTAGATAC+CGG | 0.546947 | 2_2:-33507697 | Msa0248790:CDS |
| TTGCTGGAGACTTGAGTGCT+GGG | 0.564006 | 2_2:-33507462 | Msa0248790:CDS |
| CATTGGATTTCAAGTCCCAA+TGG | 0.581494 | 2_2:+33507175 | None:intergenic |
| AGGAAGTCTACTTACCACAT+TGG | 0.588614 | 2_2:+33507158 | None:intergenic |
| TAAGAAATAGCGAGGAATGG+TGG | 0.598879 | 2_2:+33507654 | None:intergenic |
| CTCCAGCAATAGCATACACA+TGG | 0.605408 | 2_2:+33507476 | None:intergenic |
| TCTTACAATTATGATTACCA+TGG | 0.610239 | 2_2:-33507610 | Msa0248790:CDS |
| GGTTAAGAAATAGCGAGGAA+TGG | 0.625164 | 2_2:+33507651 | None:intergenic |
| AAGTTGCGCATATTGATGGA+AGG | 0.635629 | 2_2:-33506251 | Msa0248790:CDS |
| TGTTACTTCAATGAAAGCAG+TGG | 0.637642 | 2_2:-33507232 | Msa0248790:CDS |
| TTACTTCATATGGATCGCCA+TGG | 0.645216 | 2_2:+33507593 | None:intergenic |
| AAGTAGCAACAAGCTTCACA+TGG | 0.652249 | 2_2:+33507422 | None:intergenic |
| GATGAGGTTAAGAAATAGCG+AGG | 0.670251 | 2_2:+33507646 | None:intergenic |
| AGAACTTGTGAAATTCGATG+AGG | 0.674310 | 2_2:+33507630 | None:intergenic |
| TCATGCACACCTTCTTCATG+CGG | 0.676475 | 2_2:-33507874 | Msa0248790:CDS |
| AAGAATGATCCAACAACATG+CGG | 0.683699 | 2_2:-33507817 | Msa0248790:intron |
| TTGGGACTTGAAATCCAATG+TGG | 0.729544 | 2_2:-33507172 | Msa0248790:intron |
| AGTGCTGGGAGATTAAACGT+TGG | 0.775374 | 2_2:-33507448 | Msa0248790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATACTGAAAAAAA+TGG | - | chr2_2:33507348-33507367 | Msa0248790:intron | 10.0% |
| !!! | ATAAATTAGTTTAATATCTA+TGG | + | chr2_2:33507767-33507786 | None:intergenic | 10.0% |
| !! | ATTAAATATACTGAAAAAAA+TGG | - | chr2_2:33507348-33507367 | Msa0248790:intron | 10.0% |
| !!! | ATAAATTAGTTTAATATCTA+TGG | + | chr2_2:33507767-33507786 | None:intergenic | 10.0% |
| !!! | TCTTTTAAACACTTTTTTTT+TGG | + | chr2_2:33507396-33507415 | None:intergenic | 15.0% |
| !! | TAAAGATAAAAAAAACCATT+AGG | - | chr2_2:33507452-33507471 | Msa0248790:CDS | 15.0% |
| !!! | TCTTTTAAACACTTTTTTTT+TGG | + | chr2_2:33507396-33507415 | None:intergenic | 15.0% |
| !! | TAAAGATAAAAAAAACCATT+AGG | - | chr2_2:33507452-33507471 | Msa0248790:CDS | 15.0% |
| !! | ATAGTATTTACCTGAAAATA+GGG | + | chr2_2:33506389-33506408 | None:intergenic | 20.0% |
| !! | TATTTGTCAAAATGAAAACA+AGG | + | chr2_2:33506998-33507017 | None:intergenic | 20.0% |
| !! | AACATCAAAAGAAAAAAAAG+CGG | + | chr2_2:33507159-33507178 | None:intergenic | 20.0% |
| !! | ATGTGAATTTAATCATAAGA+AGG | + | chr2_2:33507251-33507270 | None:intergenic | 20.0% |
| !! | ACACATCATAAAACTATTAA+AGG | + | chr2_2:33507297-33507316 | None:intergenic | 20.0% |
| !!! | TTATGATGTGTTTTTCAATA+AGG | - | chr2_2:33507306-33507325 | Msa0248790:intron | 20.0% |
| !!! | TATGATGTGTTTTTCAATAA+GGG | - | chr2_2:33507307-33507326 | Msa0248790:intron | 20.0% |
| !!! | TTTTTCAATAAGGGTAAATT+TGG | - | chr2_2:33507316-33507335 | Msa0248790:intron | 20.0% |
| !! | AAATATACTGAAAAAAATGG+AGG | - | chr2_2:33507351-33507370 | Msa0248790:intron | 20.0% |
| !! | AATATACTGAAAAAAATGGA+GGG | - | chr2_2:33507352-33507371 | Msa0248790:intron | 20.0% |
| !! | TTCTGTAAAATACACTTTAT+CGG | - | chr2_2:33507912-33507931 | Msa0248790:CDS | 20.0% |
| !! | ATAGTATTTACCTGAAAATA+GGG | + | chr2_2:33506389-33506408 | None:intergenic | 20.0% |
| !! | TATTTGTCAAAATGAAAACA+AGG | + | chr2_2:33506998-33507017 | None:intergenic | 20.0% |
| !! | AACATCAAAAGAAAAAAAAG+CGG | + | chr2_2:33507159-33507178 | None:intergenic | 20.0% |
| !! | ATGTGAATTTAATCATAAGA+AGG | + | chr2_2:33507251-33507270 | None:intergenic | 20.0% |
| !! | ACACATCATAAAACTATTAA+AGG | + | chr2_2:33507297-33507316 | None:intergenic | 20.0% |
| !!! | TTATGATGTGTTTTTCAATA+AGG | - | chr2_2:33507306-33507325 | Msa0248790:intron | 20.0% |
| !!! | TATGATGTGTTTTTCAATAA+GGG | - | chr2_2:33507307-33507326 | Msa0248790:intron | 20.0% |
| !!! | TTTTTCAATAAGGGTAAATT+TGG | - | chr2_2:33507316-33507335 | Msa0248790:intron | 20.0% |
| !! | AAATATACTGAAAAAAATGG+AGG | - | chr2_2:33507351-33507370 | Msa0248790:intron | 20.0% |
| !! | AATATACTGAAAAAAATGGA+GGG | - | chr2_2:33507352-33507371 | Msa0248790:intron | 20.0% |
| !! | TTCTGTAAAATACACTTTAT+CGG | - | chr2_2:33507912-33507931 | Msa0248790:CDS | 20.0% |
| ! | CATAGTATTTACCTGAAAAT+AGG | + | chr2_2:33506390-33506409 | None:intergenic | 25.0% |
| ! | ACTACAAAAACTACACAATT+CGG | - | chr2_2:33506422-33506441 | Msa0248790:intron | 25.0% |
| ! | TCTTACAATTATGATTACCA+TGG | - | chr2_2:33506523-33506542 | Msa0248790:intron | 25.0% |
| !! | TCACAAATATTTTTCCTACA+AGG | - | chr2_2:33506789-33506808 | Msa0248790:intron | 25.0% |
| !!! | CTTTTTCGCAGATATAATTT+TGG | + | chr2_2:33507068-33507087 | None:intergenic | 25.0% |
| ! | TGTGATTAATTAACACCTAA+TGG | + | chr2_2:33507470-33507489 | None:intergenic | 25.0% |
| ! | TGAATTATTGCTCTTGAATT+AGG | - | chr2_2:33507539-33507558 | Msa0248790:intron | 25.0% |
| !!! | TTTGACATGTGTTCTAAAAA+TGG | + | chr2_2:33507864-33507883 | None:intergenic | 25.0% |
| ! | TCTGTAAAATACACTTTATC+GGG | - | chr2_2:33507913-33507932 | Msa0248790:CDS | 25.0% |
| !!! | TCCATTTTCCATTTTTCTAT+TGG | - | chr2_2:33507944-33507963 | Msa0248790:CDS | 25.0% |
| !!! | CCATTTTCCATTTTTCTATT+GGG | - | chr2_2:33507945-33507964 | Msa0248790:CDS | 25.0% |
| ! | AATAATGCCCAATAGAAAAA+TGG | + | chr2_2:33507955-33507974 | None:intergenic | 25.0% |
| ! | CATAGTATTTACCTGAAAAT+AGG | + | chr2_2:33506390-33506409 | None:intergenic | 25.0% |
| ! | ACTACAAAAACTACACAATT+CGG | - | chr2_2:33506422-33506441 | Msa0248790:intron | 25.0% |
| ! | TCTTACAATTATGATTACCA+TGG | - | chr2_2:33506523-33506542 | Msa0248790:intron | 25.0% |
| !! | TCACAAATATTTTTCCTACA+AGG | - | chr2_2:33506789-33506808 | Msa0248790:intron | 25.0% |
| !!! | CTTTTTCGCAGATATAATTT+TGG | + | chr2_2:33507068-33507087 | None:intergenic | 25.0% |
| ! | TGTGATTAATTAACACCTAA+TGG | + | chr2_2:33507470-33507489 | None:intergenic | 25.0% |
| ! | TGAATTATTGCTCTTGAATT+AGG | - | chr2_2:33507539-33507558 | Msa0248790:intron | 25.0% |
| !!! | TTTGACATGTGTTCTAAAAA+TGG | + | chr2_2:33507864-33507883 | None:intergenic | 25.0% |
| ! | TCTGTAAAATACACTTTATC+GGG | - | chr2_2:33507913-33507932 | Msa0248790:CDS | 25.0% |
| !!! | TCCATTTTCCATTTTTCTAT+TGG | - | chr2_2:33507944-33507963 | Msa0248790:CDS | 25.0% |
| !!! | CCATTTTCCATTTTTCTATT+GGG | - | chr2_2:33507945-33507964 | Msa0248790:CDS | 25.0% |
| ! | AATAATGCCCAATAGAAAAA+TGG | + | chr2_2:33507955-33507974 | None:intergenic | 25.0% |
| !! | AATTTTGAGGAAGGATAACA+AGG | + | chr2_2:33506167-33506186 | None:intergenic | 30.0% |
| ATCCTTCCTCAAAATTGTAA+TGG | - | chr2_2:33506171-33506190 | Msa0248790:CDS | 30.0% | |
| !! | TACCATTACAATTTTGAGGA+AGG | + | chr2_2:33506176-33506195 | None:intergenic | 30.0% |
| ! | CAACTACCATTACAATTTTG+AGG | + | chr2_2:33506180-33506199 | None:intergenic | 30.0% |
| TTTACCTGAAAATAGGGTTA+AGG | + | chr2_2:33506383-33506402 | None:intergenic | 30.0% | |
| ! | GCAATCATTTTCTTGAATTC+CGG | + | chr2_2:33506458-33506477 | None:intergenic | 30.0% |
| CATTTCATGAATTTCCTTGT+AGG | + | chr2_2:33506806-33506825 | None:intergenic | 30.0% | |
| ATTCATGAAATGCTAAGCTA+TGG | - | chr2_2:33506814-33506833 | Msa0248790:intron | 30.0% | |
| !! | AGTTTGATTGACCCTTATTT+TGG | - | chr2_2:33507086-33507105 | Msa0248790:intron | 30.0% |
| GAAGAACCAATCCAAAATAA+GGG | + | chr2_2:33507100-33507119 | None:intergenic | 30.0% | |
| TGAAGAACCAATCCAAAATA+AGG | + | chr2_2:33507101-33507120 | None:intergenic | 30.0% | |
| TGTGAAACAAAAGTAGTAGT+TGG | + | chr2_2:33507430-33507449 | None:intergenic | 30.0% | |
| !! | CCTCTTTTATTTCATTTGAG+TGG | + | chr2_2:33507634-33507653 | None:intergenic | 30.0% |
| CCACTCAAATGAAATAAAAG+AGG | - | chr2_2:33507631-33507650 | Msa0248790:CDS | 30.0% | |
| CCCAATAGAAAAATGGAAAA+TGG | + | chr2_2:33507948-33507967 | None:intergenic | 30.0% | |
| !! | AATTTTGAGGAAGGATAACA+AGG | + | chr2_2:33506167-33506186 | None:intergenic | 30.0% |
| ATCCTTCCTCAAAATTGTAA+TGG | - | chr2_2:33506171-33506190 | Msa0248790:CDS | 30.0% | |
| !! | TACCATTACAATTTTGAGGA+AGG | + | chr2_2:33506176-33506195 | None:intergenic | 30.0% |
| ! | CAACTACCATTACAATTTTG+AGG | + | chr2_2:33506180-33506199 | None:intergenic | 30.0% |
| TTTACCTGAAAATAGGGTTA+AGG | + | chr2_2:33506383-33506402 | None:intergenic | 30.0% | |
| ! | GCAATCATTTTCTTGAATTC+CGG | + | chr2_2:33506458-33506477 | None:intergenic | 30.0% |
| CATTTCATGAATTTCCTTGT+AGG | + | chr2_2:33506806-33506825 | None:intergenic | 30.0% | |
| ATTCATGAAATGCTAAGCTA+TGG | - | chr2_2:33506814-33506833 | Msa0248790:intron | 30.0% | |
| !! | AGTTTGATTGACCCTTATTT+TGG | - | chr2_2:33507086-33507105 | Msa0248790:intron | 30.0% |
| GAAGAACCAATCCAAAATAA+GGG | + | chr2_2:33507100-33507119 | None:intergenic | 30.0% | |
| TGAAGAACCAATCCAAAATA+AGG | + | chr2_2:33507101-33507120 | None:intergenic | 30.0% | |
| TGTGAAACAAAAGTAGTAGT+TGG | + | chr2_2:33507430-33507449 | None:intergenic | 30.0% | |
| !! | CCTCTTTTATTTCATTTGAG+TGG | + | chr2_2:33507634-33507653 | None:intergenic | 30.0% |
| CCACTCAAATGAAATAAAAG+AGG | - | chr2_2:33507631-33507650 | Msa0248790:CDS | 30.0% | |
| CCCAATAGAAAAATGGAAAA+TGG | + | chr2_2:33507948-33507967 | None:intergenic | 30.0% | |
| GGATCATTCTTAAGTCGAAA+TGG | + | chr2_2:33506307-33506326 | None:intergenic | 35.0% | |
| AAGAATGATCCAACAACATG+CGG | - | chr2_2:33506316-33506335 | Msa0248790:intron | 35.0% | |
| ! | ACAACCTTAACCCTATTTTC+AGG | - | chr2_2:33506376-33506395 | Msa0248790:intron | 35.0% |
| ACAATTCGGTTAGTAGATAC+CGG | - | chr2_2:33506436-33506455 | Msa0248790:intron | 35.0% | |
| AGAACTTGTGAAATTCGATG+AGG | + | chr2_2:33506506-33506525 | None:intergenic | 35.0% | |
| GCTGGATAACTTACTTCATA+TGG | + | chr2_2:33506553-33506572 | None:intergenic | 35.0% | |
| ATGAAGTAAGTTATCCAGCT+TGG | - | chr2_2:33506554-33506573 | Msa0248790:intron | 35.0% | |
| TAAGTTATCCAGCTTGGTTA+GGG | - | chr2_2:33506560-33506579 | Msa0248790:intron | 35.0% | |
| ! | GCTATGGATTTTACCTTTCT+TGG | - | chr2_2:33506830-33506849 | Msa0248790:intron | 35.0% |
| ! | TGTTACTTCAATGAAAGCAG+TGG | - | chr2_2:33506901-33506920 | Msa0248790:intron | 35.0% |
| ! | TGATTTTTGCAAGACTCCAT+TGG | - | chr2_2:33506942-33506961 | Msa0248790:intron | 35.0% |
| ! | GATTTTTGCAAGACTCCATT+GGG | - | chr2_2:33506943-33506962 | Msa0248790:intron | 35.0% |
| !!! | GATTGACCCTTATTTTGGAT+TGG | - | chr2_2:33507091-33507110 | Msa0248790:intron | 35.0% |
| ! | AGCTCTTAGCACAAGTTTTA+AGG | - | chr2_2:33507181-33507200 | Msa0248790:CDS | 35.0% |
| !! | GCTCTTAGCACAAGTTTTAA+GGG | - | chr2_2:33507182-33507201 | Msa0248790:CDS | 35.0% |
| ATTCACATGCGATAAACCAA+CGG | - | chr2_2:33507263-33507282 | Msa0248790:intron | 35.0% | |
| TTGCTCTTGAATTAGGACAT+TGG | - | chr2_2:33507546-33507565 | Msa0248790:intron | 35.0% | |
| GGATCATTCTTAAGTCGAAA+TGG | + | chr2_2:33506307-33506326 | None:intergenic | 35.0% | |
| AAGAATGATCCAACAACATG+CGG | - | chr2_2:33506316-33506335 | Msa0248790:intron | 35.0% | |
| ! | ACAACCTTAACCCTATTTTC+AGG | - | chr2_2:33506376-33506395 | Msa0248790:intron | 35.0% |
| ACAATTCGGTTAGTAGATAC+CGG | - | chr2_2:33506436-33506455 | Msa0248790:intron | 35.0% | |
| AGAACTTGTGAAATTCGATG+AGG | + | chr2_2:33506506-33506525 | None:intergenic | 35.0% | |
| GCTGGATAACTTACTTCATA+TGG | + | chr2_2:33506553-33506572 | None:intergenic | 35.0% | |
| ATGAAGTAAGTTATCCAGCT+TGG | - | chr2_2:33506554-33506573 | Msa0248790:intron | 35.0% | |
| TAAGTTATCCAGCTTGGTTA+GGG | - | chr2_2:33506560-33506579 | Msa0248790:intron | 35.0% | |
| ! | GCTATGGATTTTACCTTTCT+TGG | - | chr2_2:33506830-33506849 | Msa0248790:intron | 35.0% |
| ! | TGTTACTTCAATGAAAGCAG+TGG | - | chr2_2:33506901-33506920 | Msa0248790:intron | 35.0% |
| ! | TGATTTTTGCAAGACTCCAT+TGG | - | chr2_2:33506942-33506961 | Msa0248790:intron | 35.0% |
| ! | GATTTTTGCAAGACTCCATT+GGG | - | chr2_2:33506943-33506962 | Msa0248790:intron | 35.0% |
| !!! | GATTGACCCTTATTTTGGAT+TGG | - | chr2_2:33507091-33507110 | Msa0248790:intron | 35.0% |
| ! | AGCTCTTAGCACAAGTTTTA+AGG | - | chr2_2:33507181-33507200 | Msa0248790:CDS | 35.0% |
| !! | GCTCTTAGCACAAGTTTTAA+GGG | - | chr2_2:33507182-33507201 | Msa0248790:CDS | 35.0% |
| ATTCACATGCGATAAACCAA+CGG | - | chr2_2:33507263-33507282 | Msa0248790:intron | 35.0% | |
| TTGCTCTTGAATTAGGACAT+TGG | - | chr2_2:33507546-33507565 | Msa0248790:intron | 35.0% | |
| ! | TTGATTTTGCCGCATGAAGA+AGG | + | chr2_2:33506271-33506290 | None:intergenic | 40.0% |
| TCGCAGGATAACTCATACAT+CGG | + | chr2_2:33506346-33506365 | None:intergenic | 40.0% | |
| TAAGAAATAGCGAGGAATGG+TGG | + | chr2_2:33506482-33506501 | None:intergenic | 40.0% | |
| GGTTAAGAAATAGCGAGGAA+TGG | + | chr2_2:33506485-33506504 | None:intergenic | 40.0% | |
| GATGAGGTTAAGAAATAGCG+AGG | + | chr2_2:33506490-33506509 | None:intergenic | 40.0% | |
| TTACTTCATATGGATCGCCA+TGG | + | chr2_2:33506543-33506562 | None:intergenic | 40.0% | |
| GTAAGTTATCCAGCTTGGTT+AGG | - | chr2_2:33506559-33506578 | Msa0248790:intron | 40.0% | |
| ATTATATGCCCTAACCAAGC+TGG | + | chr2_2:33506571-33506590 | None:intergenic | 40.0% | |
| ATCCAGTGAAGAATGATCGT+AGG | - | chr2_2:33506608-33506627 | Msa0248790:intron | 40.0% | |
| TACCTACGATCATTCTTCAC+TGG | + | chr2_2:33506613-33506632 | None:intergenic | 40.0% | |
| AAGTAGCAACAAGCTTCACA+TGG | + | chr2_2:33506714-33506733 | None:intergenic | 40.0% | |
| ATGCACGTCTTAACCAAGAA+AGG | + | chr2_2:33506846-33506865 | None:intergenic | 40.0% | |
| GTGAAGATGCTTGTGATGAT+AGG | - | chr2_2:33506866-33506885 | Msa0248790:intron | 40.0% | |
| ! | CATTGGATTTCAAGTCCCAA+TGG | + | chr2_2:33506961-33506980 | None:intergenic | 40.0% |
| TTGGGACTTGAAATCCAATG+TGG | - | chr2_2:33506961-33506980 | Msa0248790:intron | 40.0% | |
| AGGAAGTCTACTTACCACAT+TGG | + | chr2_2:33506978-33506997 | None:intergenic | 40.0% | |
| ATTAAAGGACTTGTGACCGT+TGG | + | chr2_2:33507282-33507301 | None:intergenic | 40.0% | |
| AATCACACTTCACACTAGAG+AGG | - | chr2_2:33507483-33507502 | Msa0248790:CDS | 40.0% | |
| GTCAAAGTTGCGCATATTGA+TGG | - | chr2_2:33507878-33507897 | Msa0248790:CDS | 40.0% | |
| AAGTTGCGCATATTGATGGA+AGG | - | chr2_2:33507882-33507901 | Msa0248790:CDS | 40.0% | |
| ! | TTGATTTTGCCGCATGAAGA+AGG | + | chr2_2:33506271-33506290 | None:intergenic | 40.0% |
| TCGCAGGATAACTCATACAT+CGG | + | chr2_2:33506346-33506365 | None:intergenic | 40.0% | |
| TAAGAAATAGCGAGGAATGG+TGG | + | chr2_2:33506482-33506501 | None:intergenic | 40.0% | |
| GGTTAAGAAATAGCGAGGAA+TGG | + | chr2_2:33506485-33506504 | None:intergenic | 40.0% | |
| GATGAGGTTAAGAAATAGCG+AGG | + | chr2_2:33506490-33506509 | None:intergenic | 40.0% | |
| TTACTTCATATGGATCGCCA+TGG | + | chr2_2:33506543-33506562 | None:intergenic | 40.0% | |
| GTAAGTTATCCAGCTTGGTT+AGG | - | chr2_2:33506559-33506578 | Msa0248790:intron | 40.0% | |
| ATTATATGCCCTAACCAAGC+TGG | + | chr2_2:33506571-33506590 | None:intergenic | 40.0% | |
| ATCCAGTGAAGAATGATCGT+AGG | - | chr2_2:33506608-33506627 | Msa0248790:intron | 40.0% | |
| TACCTACGATCATTCTTCAC+TGG | + | chr2_2:33506613-33506632 | None:intergenic | 40.0% | |
| AAGTAGCAACAAGCTTCACA+TGG | + | chr2_2:33506714-33506733 | None:intergenic | 40.0% | |
| ATGCACGTCTTAACCAAGAA+AGG | + | chr2_2:33506846-33506865 | None:intergenic | 40.0% | |
| GTGAAGATGCTTGTGATGAT+AGG | - | chr2_2:33506866-33506885 | Msa0248790:intron | 40.0% | |
| ! | CATTGGATTTCAAGTCCCAA+TGG | + | chr2_2:33506961-33506980 | None:intergenic | 40.0% |
| TTGGGACTTGAAATCCAATG+TGG | - | chr2_2:33506961-33506980 | Msa0248790:intron | 40.0% | |
| AGGAAGTCTACTTACCACAT+TGG | + | chr2_2:33506978-33506997 | None:intergenic | 40.0% | |
| ATTAAAGGACTTGTGACCGT+TGG | + | chr2_2:33507282-33507301 | None:intergenic | 40.0% | |
| AATCACACTTCACACTAGAG+AGG | - | chr2_2:33507483-33507502 | Msa0248790:CDS | 40.0% | |
| GTCAAAGTTGCGCATATTGA+TGG | - | chr2_2:33507878-33507897 | Msa0248790:CDS | 40.0% | |
| AAGTTGCGCATATTGATGGA+AGG | - | chr2_2:33507882-33507901 | Msa0248790:CDS | 40.0% | |
| TCATGCACACCTTCTTCATG+CGG | - | chr2_2:33506259-33506278 | Msa0248790:CDS | 45.0% | |
| !!! | GGTTGTGATGTTGTTTTCGC+AGG | + | chr2_2:33506362-33506381 | None:intergenic | 45.0% |
| AGCCATGTGTATGCTATTGC+TGG | - | chr2_2:33506655-33506674 | Msa0248790:intron | 45.0% | |
| CTCCAGCAATAGCATACACA+TGG | + | chr2_2:33506660-33506679 | None:intergenic | 45.0% | |
| ! | AGTGCTGGGAGATTAAACGT+TGG | - | chr2_2:33506685-33506704 | Msa0248790:intron | 45.0% |
| !! | GCTTCTGCTTTTAAGCCTGT+TGG | - | chr2_2:33506739-33506758 | Msa0248790:intron | 45.0% |
| TCATTCTCGACAACACCAAC+AGG | + | chr2_2:33506757-33506776 | None:intergenic | 45.0% | |
| TCATGCACACCTTCTTCATG+CGG | - | chr2_2:33506259-33506278 | Msa0248790:CDS | 45.0% | |
| !!! | GGTTGTGATGTTGTTTTCGC+AGG | + | chr2_2:33506362-33506381 | None:intergenic | 45.0% |
| AGCCATGTGTATGCTATTGC+TGG | - | chr2_2:33506655-33506674 | Msa0248790:intron | 45.0% | |
| CTCCAGCAATAGCATACACA+TGG | + | chr2_2:33506660-33506679 | None:intergenic | 45.0% | |
| ! | AGTGCTGGGAGATTAAACGT+TGG | - | chr2_2:33506685-33506704 | Msa0248790:intron | 45.0% |
| !! | GCTTCTGCTTTTAAGCCTGT+TGG | - | chr2_2:33506739-33506758 | Msa0248790:intron | 45.0% |
| TCATTCTCGACAACACCAAC+AGG | + | chr2_2:33506757-33506776 | None:intergenic | 45.0% | |
| !!! | ATATAAATATTTGTATTTTT+TGG | - | chr2_2:33507215-33507234 | Msa0248790:CDS | 5.0% |
| !!! | ATATAAATATTTGTATTTTT+TGG | - | chr2_2:33507215-33507234 | Msa0248790:CDS | 5.0% |
| ATCGGATCACCGCATGTTGT+TGG | + | chr2_2:33506328-33506347 | None:intergenic | 50.0% | |
| ATTGCTGGAGACTTGAGTGC+TGG | - | chr2_2:33506670-33506689 | Msa0248790:intron | 50.0% | |
| TTGCTGGAGACTTGAGTGCT+GGG | - | chr2_2:33506671-33506690 | Msa0248790:intron | 50.0% | |
| ATCGGATCACCGCATGTTGT+TGG | + | chr2_2:33506328-33506347 | None:intergenic | 50.0% | |
| ATTGCTGGAGACTTGAGTGC+TGG | - | chr2_2:33506670-33506689 | Msa0248790:intron | 50.0% | |
| TTGCTGGAGACTTGAGTGCT+GGG | - | chr2_2:33506671-33506690 | Msa0248790:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 33506148 | 33508007 | 33506148 | ID=Msa0248790;Name=Msa0248790 |
| chr2_2 | mRNA | 33506148 | 33508007 | 33506148 | ID=Msa0248790-mRNA-1;Parent=Msa0248790;Name=Msa0248790-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.16|0|1|0|0|7|0|264 |
| chr2_2 | exon | 33507818 | 33508007 | 33507818 | ID=Msa0248790-mRNA-1:exon:11252;Parent=Msa0248790-mRNA-1 |
| chr2_2 | exon | 33507554 | 33507757 | 33507554 | ID=Msa0248790-mRNA-1:exon:11251;Parent=Msa0248790-mRNA-1 |
| chr2_2 | exon | 33507543 | 33507549 | 33507543 | ID=Msa0248790-mRNA-1:exon:11250;Parent=Msa0248790-mRNA-1 |
| chr2_2 | exon | 33507372 | 33507525 | 33507372 | ID=Msa0248790-mRNA-1:exon:11249;Parent=Msa0248790-mRNA-1 |
| chr2_2 | exon | 33507290 | 33507297 | 33507290 | ID=Msa0248790-mRNA-1:exon:11248;Parent=Msa0248790-mRNA-1 |
| chr2_2 | exon | 33507173 | 33507267 | 33507173 | ID=Msa0248790-mRNA-1:exon:11247;Parent=Msa0248790-mRNA-1 |
| chr2_2 | exon | 33506148 | 33506284 | 33506148 | ID=Msa0248790-mRNA-1:exon:11246;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33507818 | 33508007 | 33507818 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33507554 | 33507757 | 33507554 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33507543 | 33507549 | 33507543 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33507372 | 33507525 | 33507372 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33507290 | 33507297 | 33507290 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33507173 | 33507267 | 33507173 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| chr2_2 | CDS | 33506148 | 33506284 | 33506148 | ID=Msa0248790-mRNA-1:cds;Parent=Msa0248790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
