AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249640 MtrunA17_Chr2g0305101 97.312 372 2 3 1 370 1 366 0.0 741
Msa0249640 MtrunA17_Chr4g0065241 72.386 373 68 8 1 370 1 341 0.0 505
Msa0249640 MtrunA17_Chr1g0149651 81.648 267 45 2 95 357 169 435 2.57e-164 467
Msa0249640 MtrunA17_Chr3g0137241 66.667 345 83 7 42 357 29 370 1.49e-157 447
Msa0249640 MtrunA17_Chr5g0398181 67.669 266 80 2 98 357 26 291 2.38e-127 368
Msa0249640 MtrunA17_Chr1g0151961 33.333 243 142 5 100 342 120 342 3.52e-29 116
Msa0249640 MtrunA17_Chr1g0192791 34.146 246 139 6 100 342 20 245 6.70e-29 113
Msa0249640 MtrunA17_Chr2g0289201 31.020 245 142 6 100 342 118 337 9.17e-29 115
Msa0249640 MtrunA17_Chr5g0413201 34.553 246 134 5 100 342 73 294 1.44e-28 113
Msa0249640 MtrunA17_Chr5g0439391 31.174 247 130 4 103 342 50 263 1.59e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249640 AT5G25220.1 59.217 434 108 9 1 369 1 430 1.16e-165 470
Msa0249640 AT5G11060.1 82.909 275 39 4 97 367 121 391 3.00e-165 468
Msa0249640 AT5G25220.2 84.906 265 33 3 97 357 157 418 6.67e-164 465
Msa0249640 AT4G32040.1 74.906 267 63 4 97 360 116 381 1.18e-142 410
Msa0249640 AT4G32040.2 77.419 248 53 3 97 342 116 362 8.84e-142 407
Msa0249640 AT1G62990.1 66.791 268 86 3 93 357 23 290 1.75e-127 368
Msa0249640 AT1G70510.1 33.730 252 144 6 91 342 61 289 7.59e-31 119
Msa0249640 AT4G08150.1 33.466 251 134 6 100 342 135 360 3.67e-30 119
Msa0249640 AT1G23380.1 34.909 275 136 10 96 361 82 322 4.15e-30 118
Msa0249640 AT1G70510.2 32.540 252 151 5 91 342 61 293 1.18e-29 116
Msa0249640 AT1G23380.2 34.657 277 136 11 96 361 82 324 3.41e-28 113
Msa0249640 AT1G62360.1 32.530 249 135 8 100 342 122 343 2.86e-23 100

Find 130 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCTCTTGCGTTTGGTTT+TGG 0.207700 2_2:+36719826 None:intergenic
TGAAAGTGAAAGATCTTTAA+TGG 0.234617 2_2:-36722119 Msa0249640:CDS
TCATTCTATGCAACAGTATA+TGG 0.238105 2_2:-36719605 Msa0249640:three_prime_UTR
TTTGTTTCCTTGTTCGAAAC+AGG 0.279115 2_2:+36719658 None:intergenic
GGTGGCAATCACACTCTAAA+TGG 0.296115 2_2:-36721777 Msa0249640:CDS
AACCAGAGTTTCATGTGATT+TGG 0.304931 2_2:-36719684 Msa0249640:exon
ACATTGAGGGTTGAGAATTT+TGG 0.305745 2_2:+36725194 None:intergenic
ATTCTGCTGCCGTAGGTTTA+CGG 0.307392 2_2:+36724959 None:intergenic
TTAATTGAAGTCCTGTTTCC+TGG 0.314760 2_2:+36719921 None:intergenic
AATTAAAGCAAATAAATAAC+TGG 0.337783 2_2:-36719904 Msa0249640:CDS
TGATGATTCTGTGTTGCTTT+CGG 0.340218 2_2:+36724851 None:intergenic
GGTTCATTAATCAAAGAAAA+AGG 0.346232 2_2:-36719883 Msa0249640:CDS
TCATGCCATGGAAGCTGTTA+TGG 0.355360 2_2:-36722420 Msa0249640:CDS
CGCTGATCCGGCACCGGCTC+CGG 0.366320 2_2:+36725001 None:intergenic
TAAAACTCACCTCTTGCGTT+TGG 0.382625 2_2:+36719820 None:intergenic
AGAAGGGAGGTTGTGTCACC+TGG 0.383923 2_2:+36721808 None:intergenic
GCTAGGTTGGTCCAGGAAAC+AGG 0.387799 2_2:-36719932 Msa0249640:CDS
TTTCGGCCCGGTTCCGATCC+CGG 0.391273 2_2:+36724868 None:intergenic
GTGCCGGATCAGCGCCGAAT+TGG 0.392791 2_2:-36724992 Msa0249640:CDS
TTCGGCCCGGTTCCGATCCC+GGG 0.394283 2_2:+36724869 None:intergenic
AGAAAACCCGGGATCGGAAC+CGG 0.397626 2_2:-36724875 Msa0249640:CDS
GGAAGCTGTTATGGCTTGTT+GGG 0.411048 2_2:-36722411 Msa0249640:CDS
TGGAAGCTGTTATGGCTTGT+TGG 0.413199 2_2:-36722412 Msa0249640:CDS
GAGCCAATTCGGCGCTGATC+CGG 0.419648 2_2:+36724989 None:intergenic
GGTGGAAGAGAGAAGAGGTT+TGG 0.421511 2_2:+36725266 None:intergenic
AAAGGAGCTTGATCAATTCA+TGG 0.424580 2_2:-36724640 Msa0249640:intron
CCGGCACCGGCTCCGGTGAA+TGG 0.444652 2_2:+36725008 None:intergenic
CAATACAAAGCAGACATACT+TGG 0.452763 2_2:-36724816 Msa0249640:CDS
AAGTACTCTTCACTTGCTAA+TGG 0.452773 2_2:-36724675 Msa0249640:CDS
TGTTATGGCTTGTTGGGAGC+TGG 0.458320 2_2:-36722405 Msa0249640:CDS
ACGGCGTTGTTGAGCCAATT+CGG 0.459617 2_2:+36724978 None:intergenic
AAAGTGAATAATTAAGCAAA+TGG 0.462491 2_2:-36725126 Msa0249640:exon
TATATGGTGGGACATTTGAT+AGG 0.466351 2_2:-36719589 Msa0249640:three_prime_UTR
GCTAAGAAATGATATTTACT+TGG 0.467901 2_2:-36719480 Msa0249640:three_prime_UTR
GGATGATGACACGAAAATAG+AGG 0.469838 2_2:+36725325 None:intergenic
AACTGTTGCTCTTCATTGAA+AGG 0.470953 2_2:+36725062 None:intergenic
TTAAAACTTACAGTAGGATA+AGG 0.472729 2_2:+36721754 None:intergenic
GTTGAAGCACGAGCTAAAAC+AGG 0.474198 2_2:-36722080 Msa0249640:intron
GGCGGTGATAGTCTCAGCTT+TGG 0.476775 2_2:-36722157 Msa0249640:CDS
CAACCTCCCTTCTGAAAGCT+TGG 0.477528 2_2:-36721798 Msa0249640:CDS
TAAATATCATTTCTTAGCAA+TGG 0.479464 2_2:+36719485 None:intergenic
TATCATTTCTTAGCAATGGT+TGG 0.488327 2_2:+36719489 None:intergenic
GTTCTTTAAAAGCACAGAGC+AGG 0.490015 2_2:+36722465 None:intergenic
TTCACTTGCTAATGGTGTTG+TGG 0.493741 2_2:-36724667 Msa0249640:CDS
TTATATGAAGGAAGCCTTGA+CGG 0.493987 2_2:-36722178 Msa0249640:CDS
AGAAGAGCGGGAAAGCTCCC+AGG 0.495370 2_2:-36721826 Msa0249640:CDS
GAACTAGGTAGGAGAAGTGG+TGG 0.496188 2_2:+36725248 None:intergenic
TTTAATGGAACGTGTGAGGC+AGG 0.496599 2_2:-36722104 Msa0249640:CDS
AGTTTGCATTGCTCTCTGCT+TGG 0.497350 2_2:+36722200 None:intergenic
TTTCACATCTGCTACATTGA+GGG 0.501679 2_2:+36725181 None:intergenic
ATTCGGCGCTGATCCGGCAC+CGG 0.502759 2_2:+36724995 None:intergenic
GAAAACCCGGGATCGGAACC+GGG 0.504035 2_2:-36724874 Msa0249640:CDS
GAGAGGAGTTAGAACTAGGT+AGG 0.504582 2_2:+36725237 None:intergenic
TCACAAAACGAGGACGTAAG+AGG 0.506259 2_2:-36724912 Msa0249640:CDS
GTTTCACATCTGCTACATTG+AGG 0.509716 2_2:+36725180 None:intergenic
TTGTTTCCTTGTTCGAAACA+GGG 0.518015 2_2:+36719659 None:intergenic
CCTCCCTTCTGAAAGCTTGG+TGG 0.525828 2_2:-36721795 Msa0249640:CDS
CTACTACCATTCACCGGAGC+CGG 0.525885 2_2:-36725014 Msa0249640:CDS
AGCAATGCAAACTTATATGA+AGG 0.526547 2_2:-36722190 Msa0249640:CDS
TGGTGGGAAAATTGTAGGTG+TGG 0.527318 2_2:+36725214 None:intergenic
TTCGAACAAGGAAACAAAGA+TGG 0.529320 2_2:-36719653 Msa0249640:three_prime_UTR
AAAGATCTTTCACTTTCAGT+AGG 0.529421 2_2:+36722124 None:intergenic
ATCCGCGGAAGCTGATCGAC+GGG 0.535334 2_2:+36724735 None:intergenic
AGACAAGGCTAGGTTGGTCC+AGG 0.536981 2_2:-36719939 Msa0249640:CDS
GGTGGGAAAATTGTAGGTGT+GGG 0.537060 2_2:+36725215 None:intergenic
GTATCTCCTGGTGAAGGGAG+TGG 0.537968 2_2:-36722250 Msa0249640:CDS
GGAAGAAGACAAGGCTAGGT+TGG 0.538207 2_2:-36719945 Msa0249640:CDS
CCATTCACCGGAGCCGGTGC+CGG 0.539777 2_2:-36725008 Msa0249640:CDS
TTGGCACCCTGTTTCGAACA+AGG 0.540002 2_2:-36719665 Msa0249640:three_prime_UTR
CAGTCTCTACAAAGCTTGAC+CGG 0.543218 2_2:-36722380 Msa0249640:intron
GTGATGTATCTGGTTGTAAG+TGG 0.546109 2_2:+36724931 None:intergenic
ACAAGCCATAACAGCTTCCA+TGG 0.548095 2_2:+36722415 None:intergenic
GTGGGAGAGGAGTTAGAACT+AGG 0.550223 2_2:+36725233 None:intergenic
GATAGAAGCTGATCGTAAAG+AGG 0.552473 2_2:+36724789 None:intergenic
GATCCGCGGAAGCTGATCGA+CGG 0.553108 2_2:+36724734 None:intergenic
ATTCTACGGAAGAGAAGAGC+GGG 0.553812 2_2:-36721838 Msa0249640:CDS
TGCCAAATCACATGAAACTC+TGG 0.553931 2_2:+36719682 None:intergenic
CGTAAGAGGTATGAACATGA+TGG 0.558929 2_2:-36724898 Msa0249640:CDS
ATTCTGTGTTGCTTTCGGCC+CGG 0.559067 2_2:+36724856 None:intergenic
TCACTTTCAGTAGGAACAAG+AGG 0.559140 2_2:+36722133 None:intergenic
TGAAGCTGTGCGTCGATCCG+CGG 0.565484 2_2:+36724720 None:intergenic
CCACCAAGCTTTCAGAAGGG+AGG 0.569465 2_2:+36721795 None:intergenic
ATTGCCACCAAGCTTTCAGA+AGG 0.570441 2_2:+36721791 None:intergenic
TAATGGTGTTGTGGATGAAA+AGG 0.570805 2_2:-36724658 Msa0249640:CDS
ACAGGTGTATCTCCTGGTGA+AGG 0.571753 2_2:-36722256 Msa0249640:intron
CGCCCGTCGATCAGCTTCCG+CGG 0.571878 2_2:-36724737 Msa0249640:CDS
TTAGATTGAGAACGGATCCA+AGG 0.572272 2_2:+36725352 None:intergenic
ACTAATCCTTCGTCTTCCAC+TGG 0.572883 2_2:-36719851 Msa0249640:CDS
TGAACATGATGGAGAAAACC+CGG 0.573901 2_2:-36724887 Msa0249640:CDS
TTAGAACTAGGTAGGAGAAG+TGG 0.574150 2_2:+36725245 None:intergenic
TTCTATGCAACAGTATATGG+TGG 0.575719 2_2:-36719602 Msa0249640:three_prime_UTR
GAAAATTGTAGGTGTGGGAG+AGG 0.578747 2_2:+36725220 None:intergenic
GCTTCAGCAGTCGCAGCGCG+TGG 0.581446 2_2:-36724703 Msa0249640:CDS
AATTGATTTCATGAGAGAGA+TGG 0.582629 2_2:+36725090 None:intergenic
ACATGTCCGTGTTCATGCCA+TGG 0.585181 2_2:-36722432 Msa0249640:CDS
TGATGGAGAAAACCCGGGAT+CGG 0.585256 2_2:-36724881 Msa0249640:CDS
TCTAGGAAGAAGACAAGGCT+AGG 0.588097 2_2:-36719949 Msa0249640:intron
GTTGCACCACTCCCTTCACC+AGG 0.588826 2_2:+36722244 None:intergenic
TTTGTTGCATATGAGGCTAA+CGG 0.590458 2_2:-36719430 Msa0249640:three_prime_UTR
TTATACTATTAAAGGATGTG+TGG 0.590901 2_2:+36719343 None:intergenic
GGGTTACAAGAGTAAGATTG+TGG 0.594567 2_2:-36721875 Msa0249640:CDS
GGAGAAAATTCTGCTGCCGT+AGG 0.594774 2_2:+36724952 None:intergenic
ACATAAGAGAAGAAATTCTA+CGG 0.596585 2_2:-36721852 Msa0249640:CDS
TAGATTGAGAACGGATCCAA+GGG 0.602017 2_2:+36725353 None:intergenic
GCATGAACAGGTGTATCTCC+TGG 0.604904 2_2:-36722262 Msa0249640:intron
CAGGTGTATCTCCTGGTGAA+GGG 0.604940 2_2:-36722255 Msa0249640:CDS
TCAGCAGTCGCAGCGCGTGG+TGG 0.605137 2_2:-36724700 Msa0249640:CDS
GAGGGATATTAGATTGAGAA+CGG 0.606751 2_2:+36725344 None:intergenic
GATGATGACACGAAAATAGA+GGG 0.608237 2_2:+36725326 None:intergenic
TCAACAACGCCGTAAACCTA+CGG 0.609759 2_2:-36724968 Msa0249640:CDS
CAAAGACTACTACCATTCAC+CGG 0.619446 2_2:-36725020 Msa0249640:CDS
GAAGGGAGGTTGTGTCACCT+GGG 0.621667 2_2:+36721809 None:intergenic
TCTATGCAACAGTATATGGT+GGG 0.624347 2_2:-36719601 Msa0249640:three_prime_UTR
CAGCTTCCATGGCATGAACA+CGG 0.631221 2_2:+36722426 None:intergenic
GAAGTGGTGGAAGAGAGAAG+AGG 0.632214 2_2:+36725261 None:intergenic
ATAGAAGCTGATCGTAAAGA+GGG 0.632926 2_2:+36724790 None:intergenic
TGAGACTATCACCGCCGTCA+AGG 0.636737 2_2:+36722164 None:intergenic
TTTACTTGGTTATATTACAG+AGG 0.636923 2_2:-36719466 Msa0249640:three_prime_UTR
GATCTTTAATGGAACGTGTG+AGG 0.637290 2_2:-36722108 Msa0249640:CDS
TTGGAGCCAGTGGAAGACGA+AGG 0.640820 2_2:+36719845 None:intergenic
GCTCCAAAACCAAACGCAAG+AGG 0.641070 2_2:-36719829 Msa0249640:intron
AGGGAGTGGTGCAACAATGT+CGG 0.641905 2_2:-36722236 Msa0249640:CDS
AAAACATGAAACTCGTGTGG+TGG 0.666835 2_2:-36719545 Msa0249640:three_prime_UTR
GTACTTCTAGGAAGAAGACA+AGG 0.678532 2_2:-36719954 Msa0249640:intron
ACCAGATACATCACAAAACG+AGG 0.688090 2_2:-36724922 Msa0249640:CDS
TTGCCACCAAGCTTTCAGAA+GGG 0.691197 2_2:+36721792 None:intergenic
AATTCTACGGAAGAGAAGAG+CGG 0.693061 2_2:-36721839 Msa0249640:CDS
AAGCAACACAGAATCATCAG+AGG 0.697069 2_2:-36724847 Msa0249640:CDS
GAACATGATGGAGAAAACCC+GGG 0.707928 2_2:-36724886 Msa0249640:CDS
TATGAAGGAAGCCTTGACGG+CGG 0.737421 2_2:-36722175 Msa0249640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAAATAAAAAATA+AGG + chr2_2:36720401-36720420 None:intergenic 0.0%
!! ATAAAAAAATTAATAAAAAT+TGG - chr2_2:36723009-36723028 Msa0249640:intron 0.0%
!!! AAAATTTATTAATATTTTAT+TGG - chr2_2:36724384-36724403 Msa0249640:intron 0.0%
!! TAAATAATAAAATTAGGTTT+GGG + chr2_2:36720103-36720122 None:intergenic 10.0%
!! TTAAATAATAAAATTAGGTT+TGG + chr2_2:36720104-36720123 None:intergenic 10.0%
!! TGATGTTAAATAATAAAATT+AGG + chr2_2:36720109-36720128 None:intergenic 10.0%
!! TTTGTAAAAAAAAAGTTTAA+CGG + chr2_2:36721154-36721173 None:intergenic 10.0%
!! TTTATTGTTGAAATATAAAT+TGG + chr2_2:36722010-36722029 None:intergenic 10.0%
!!! TTCAAAATATACTAATTTTA+AGG + chr2_2:36723119-36723138 None:intergenic 10.0%
!! TCATTTAGTTATTAATATTA+TGG - chr2_2:36723160-36723179 Msa0249640:intron 10.0%
!!! AGTAGTAATTTTTTTTTTTA+AGG - chr2_2:36723203-36723222 Msa0249640:intron 10.0%
!!! TATGAATTATTTAAAACTTT+GGG + chr2_2:36723598-36723617 None:intergenic 10.0%
!!! TTATGAATTATTTAAAACTT+TGG + chr2_2:36723599-36723618 None:intergenic 10.0%
!!! TTTTTTTACCTTAAATATAA+GGG - chr2_2:36724228-36724247 Msa0249640:intron 10.0%
!!! CACTTTTTTTTTTATGTTTA+GGG + chr2_2:36719564-36719583 None:intergenic 15.0%
!!! TCACTTTTTTTTTTATGTTT+AGG + chr2_2:36719565-36719584 None:intergenic 15.0%
!! TATTAAGTGAGTTTATAATT+GGG - chr2_2:36721809-36721828 Msa0249640:CDS 15.0%
!! AAAAGCTTAATCTTAAAATT+TGG + chr2_2:36721886-36721905 None:intergenic 15.0%
!! AGAAAAAAATTAAACATTAG+AGG + chr2_2:36721983-36722002 None:intergenic 15.0%
!! TTTCAACAATAAATTGTTAA+TGG - chr2_2:36722017-36722036 Msa0249640:intron 15.0%
!! AAAATAAAACATCTCTAATA+TGG - chr2_2:36722040-36722059 Msa0249640:intron 15.0%
!! AGTATAAAATATATACACTA+TGG + chr2_2:36722698-36722717 None:intergenic 15.0%
!! ATTATTAATGAAATGCTATA+AGG + chr2_2:36723235-36723254 None:intergenic 15.0%
!! TAATCTAAATAGATCAATAA+TGG + chr2_2:36723449-36723468 None:intergenic 15.0%
!! TCAAAAATAGAAAGAAATAT+AGG - chr2_2:36723499-36723518 Msa0249640:intron 15.0%
!! AAATTAAATAATCTCATTCA+AGG - chr2_2:36724083-36724102 Msa0249640:intron 15.0%
!!! GTTTTTTTACCTTAAATATA+AGG - chr2_2:36724227-36724246 Msa0249640:intron 15.0%
!!! TTTTTTACCTTAAATATAAG+GGG - chr2_2:36724229-36724248 Msa0249640:intron 15.0%
!!! TAAAATCACTCATAATTTTT+TGG + chr2_2:36724301-36724320 None:intergenic 15.0%
!! CATGTTATTAATGTTAATAA+AGG + chr2_2:36724333-36724352 None:intergenic 15.0%
!! AATTAAAGCAAATAAATAAC+TGG - chr2_2:36724800-36724819 Msa0249640:CDS 15.0%
!! AAAGTGAATAATTAAGCAAA+TGG - chr2_2:36719578-36719597 Msa0249640:three_prime_UTR 20.0%
!! ATGAATAGAATAAATTTGCA+TGG + chr2_2:36720149-36720168 None:intergenic 20.0%
!!! TTCAAAATTTTGTCTAGATT+TGG - chr2_2:36720363-36720382 Msa0249640:intron 20.0%
!!! TCAAAATTTTGTCTAGATTT+GGG - chr2_2:36720364-36720383 Msa0249640:intron 20.0%
!!! TGATTTTTTTTCCTCTAATA+AGG - chr2_2:36720586-36720605 Msa0249640:intron 20.0%
!! ATCTAGTCACTAAAAATATT+TGG - chr2_2:36720965-36720984 Msa0249640:intron 20.0%
!!! TTAATGATATTTTGCATTGA+TGG - chr2_2:36721099-36721118 Msa0249640:intron 20.0%
!!! AAAAGTCATTTATGACATTT+TGG + chr2_2:36721263-36721282 None:intergenic 20.0%
!! ATTGAAGTATGGAAAATATA+TGG + chr2_2:36721623-36721642 None:intergenic 20.0%
!! ATATGTAATAGATTGAAGTA+TGG + chr2_2:36721634-36721653 None:intergenic 20.0%
!! GTATTAAGTGAGTTTATAAT+TGG - chr2_2:36721808-36721827 Msa0249640:CDS 20.0%
!!! TCTTACTAATTAGTTTTGTA+TGG - chr2_2:36721843-36721862 Msa0249640:CDS 20.0%
!!! CTTACTAATTAGTTTTGTAT+GGG - chr2_2:36721844-36721863 Msa0249640:CDS 20.0%
!! ACGATTGTAATACAAATATA+AGG + chr2_2:36722097-36722116 None:intergenic 20.0%
!!! TCTTTGTGATTTTAGTATTT+AGG - chr2_2:36722163-36722182 Msa0249640:CDS 20.0%
!! ATATGAGACCAAAATATAAT+GGG + chr2_2:36722190-36722209 None:intergenic 20.0%
!! TATATGAGACCAAAATATAA+TGG + chr2_2:36722191-36722210 None:intergenic 20.0%
!!! GATATTTGAAACTTAATTAC+CGG + chr2_2:36722346-36722365 None:intergenic 20.0%
!!! AATAGATCAATAATGGATAA+GGG + chr2_2:36723442-36723461 None:intergenic 20.0%
!!! AAATAGATCAATAATGGATA+AGG + chr2_2:36723443-36723462 None:intergenic 20.0%
!!! ATATAGGAGTATTAATAAAC+TGG - chr2_2:36723515-36723534 Msa0249640:intron 20.0%
!!! TACCTTTATTTGAATTTTCT+AGG + chr2_2:36724064-36724083 None:intergenic 20.0%
!! TCGTTAAGTGATTTATAAAT+TGG - chr2_2:36724409-36724428 Msa0249640:intron 20.0%
!! ATAACTTATGTGATTTGAAA+AGG - chr2_2:36724457-36724476 Msa0249640:intron 20.0%
!! TTAATCAAAGAAAAAGGAAT+TGG - chr2_2:36724827-36724846 Msa0249640:CDS 20.0%
!!! TTTTTACTTTTCAATAGTAG+TGG - chr2_2:36724981-36725000 Msa0249640:CDS 20.0%
!! TAAATATCATTTCTTAGCAA+TGG + chr2_2:36725222-36725241 None:intergenic 20.0%
! TTGATTAAAGTAGTTGTAGT+GGG + chr2_2:36720181-36720200 None:intergenic 25.0%
! GTTATTGCACATAGTTAATT+AGG + chr2_2:36720273-36720292 None:intergenic 25.0%
!! TTTGATCTTTCCTGAATTTT+CGG - chr2_2:36720438-36720457 Msa0249640:intron 25.0%
!! ACTTTAAAAAACAGTAAACG+AGG - chr2_2:36720475-36720494 Msa0249640:intron 25.0%
! ATGTTCGAAGAAAAAGTAAA+GGG + chr2_2:36720687-36720706 None:intergenic 25.0%
! AATGTTCGAAGAAAAAGTAA+AGG + chr2_2:36720688-36720707 None:intergenic 25.0%
!!! CACTAAAAATATTTGGTGTT+CGG - chr2_2:36720972-36720991 Msa0249640:intron 25.0%
!!! TTGTGACATTAACTAGTTTT+TGG - chr2_2:36721005-36721024 Msa0249640:intron 25.0%
! ATTCATCTAGGAATATTCAA+CGG + chr2_2:36721036-36721055 None:intergenic 25.0%
! CAAACAACAATTTATGACAT+AGG - chr2_2:36721174-36721193 Msa0249640:intron 25.0%
! ACACTTGTGTGATATAAAAT+TGG - chr2_2:36721224-36721243 Msa0249640:intron 25.0%
!! TTCTCTTTCTCTCTTTTATA+AGG - chr2_2:36721282-36721301 Msa0249640:intron 25.0%
!! TCGGATGAAATTGAATTTTA+TGG - chr2_2:36721357-36721376 Msa0249640:intron 25.0%
!! ATTGAATTTTATGGTGTGTT+CGG - chr2_2:36721366-36721385 Msa0249640:intron 25.0%
! AATCACGTTAAAAATTACCT+CGG + chr2_2:36721421-36721440 None:intergenic 25.0%
! TGATTTAAAGAAGCTTCAAA+AGG - chr2_2:36721436-36721455 Msa0249640:intron 25.0%
!!! ATATATTTTGATGAGAGAGA+AGG + chr2_2:36721564-36721583 None:intergenic 25.0%
!!! TTTTGATAGTGTGAATCAAA+AGG + chr2_2:36721708-36721727 None:intergenic 25.0%
! ATACAAATATAAGGAAATGC+AGG + chr2_2:36722088-36722107 None:intergenic 25.0%
! AATACTAAAATCACAAAGAG+AGG + chr2_2:36722162-36722181 None:intergenic 25.0%
!!! ATTTAGGACCCATTATATTT+TGG - chr2_2:36722179-36722198 Msa0249640:CDS 25.0%
! TGAAAGTGAAAGATCTTTAA+TGG - chr2_2:36722585-36722604 Msa0249640:intron 25.0%
!!! TCAATGTTTTTTCAATATGC+AGG - chr2_2:36722808-36722827 Msa0249640:intron 25.0%
!!! CAATGTTTTTTCAATATGCA+GGG - chr2_2:36722809-36722828 Msa0249640:intron 25.0%
! ACATAAGAGAAGAAATTCTA+CGG - chr2_2:36722852-36722871 Msa0249640:intron 25.0%
! TTAAAACTTACAGTAGGATA+AGG + chr2_2:36722953-36722972 None:intergenic 25.0%
! TTGATCTTAAAACTTACAGT+AGG + chr2_2:36722959-36722978 None:intergenic 25.0%
!!! TGGAGTATTTTTAAAAAGAG+TGG - chr2_2:36723180-36723199 Msa0249640:intron 25.0%
! AATGAGAGTTTCAATACAAT+TGG - chr2_2:36723252-36723271 Msa0249640:intron 25.0%
! ATGAGAGTTTCAATACAATT+GGG - chr2_2:36723253-36723272 Msa0249640:intron 25.0%
! GGGTATATCATAATAAATAG+CGG - chr2_2:36723273-36723292 Msa0249640:intron 25.0%
! GGTATATCATAATAAATAGC+GGG - chr2_2:36723274-36723293 Msa0249640:intron 25.0%
!!! CTCTTTATTTTCTAACTCTA+GGG + chr2_2:36723371-36723390 None:intergenic 25.0%
! TAGAAAATAAAGAGGTAAAG+AGG - chr2_2:36723377-36723396 Msa0249640:intron 25.0%
!!! AAGACTTTTTTGTTGTTAGA+AGG + chr2_2:36723640-36723659 None:intergenic 25.0%
! TGATCACACTAAATATGATA+GGG + chr2_2:36723700-36723719 None:intergenic 25.0%
! ATGATCACACTAAATATGAT+AGG + chr2_2:36723701-36723720 None:intergenic 25.0%
!!! TTTCTTTAAAATACCCTCAT+GGG + chr2_2:36723778-36723797 None:intergenic 25.0%
!!! TTTTCTTTAAAATACCCTCA+TGG + chr2_2:36723779-36723798 None:intergenic 25.0%
!!! TTTTTTGATACGCATGAAAA+TGG + chr2_2:36723885-36723904 None:intergenic 25.0%
!!! ATTTTAACAAACTTCAAGGA+AGG + chr2_2:36723951-36723970 None:intergenic 25.0%
!!! TGACATTTTAACAAACTTCA+AGG + chr2_2:36723955-36723974 None:intergenic 25.0%
! CATTGAAAATTAAGTAGTGA+AGG + chr2_2:36724012-36724031 None:intergenic 25.0%
! GACCTAGAAAATTCAAATAA+AGG - chr2_2:36724059-36724078 Msa0249640:intron 25.0%
! GGTTCATTAATCAAAGAAAA+AGG - chr2_2:36724821-36724840 Msa0249640:CDS 25.0%
! GCTAAGAAATGATATTTACT+TGG - chr2_2:36725224-36725243 Msa0249640:five_prime_UTR 25.0%
! TTTACTTGGTTATATTACAG+AGG - chr2_2:36725238-36725257 Msa0249640:five_prime_UTR 25.0%
!!! GGAAAAGCACTTTCTTTTAT+GGG + chr2_2:36719420-36719439 None:intergenic 30.0%
!!! TGGAAAAGCACTTTCTTTTA+TGG + chr2_2:36719421-36719440 None:intergenic 30.0%
!! AATTTTGGTGGGAAAATTGT+AGG + chr2_2:36719498-36719517 None:intergenic 30.0%
! AATTGATTTCATGAGAGAGA+TGG + chr2_2:36719617-36719636 None:intergenic 30.0%
TGATTAAAGTAGTTGTAGTG+GGG + chr2_2:36720180-36720199 None:intergenic 30.0%
GTTGATTAAAGTAGTTGTAG+TGG + chr2_2:36720182-36720201 None:intergenic 30.0%
!! TAATTAGTTTGTCCTGACTT+AGG - chr2_2:36720640-36720659 Msa0249640:intron 30.0%
AATTGATCCTTGCAACAAAT+GGG + chr2_2:36720740-36720759 None:intergenic 30.0%
CATCAGATTAAGATTCAAGT+CGG + chr2_2:36720777-36720796 None:intergenic 30.0%
ATATACCCGCAAATTATTGA+TGG - chr2_2:36720857-36720876 Msa0249640:intron 30.0%
! AACTACCATCAATAATTTGC+GGG + chr2_2:36720865-36720884 None:intergenic 30.0%
CAACTACCATCAATAATTTG+CGG + chr2_2:36720866-36720885 None:intergenic 30.0%
CTAGTTAATGTCACAATATG+TGG + chr2_2:36721001-36721020 None:intergenic 30.0%
!!! TGACACAGTTTTATTCATCT+AGG + chr2_2:36721048-36721067 None:intergenic 30.0%
AATTTATGACATAGGACTGT+GGG - chr2_2:36721182-36721201 Msa0249640:intron 30.0%
AAGGATTGTGACATTGTAAT+TGG - chr2_2:36721301-36721320 Msa0249640:intron 30.0%
AAATTCAATTTCATCCGAAG+TGG + chr2_2:36721355-36721374 None:intergenic 30.0%
ATCACGTTAAAAATTACCTC+GGG + chr2_2:36721420-36721439 None:intergenic 30.0%
CAACAACATGAAAGAATCAT+AGG + chr2_2:36721662-36721681 None:intergenic 30.0%
ATGTTGTTGATGTTGTAAGT+GGG - chr2_2:36721673-36721692 Msa0249640:intron 30.0%
! TGGCTTTTTATCTTTGCAAA+TGG + chr2_2:36722410-36722429 None:intergenic 30.0%
AGCAATGCAAACTTATATGA+AGG - chr2_2:36722514-36722533 Msa0249640:intron 30.0%
AAAGATCTTTCACTTTCAGT+AGG + chr2_2:36722583-36722602 None:intergenic 30.0%
ATACGAAATGACAATTGTCA+GGG + chr2_2:36722985-36723004 None:intergenic 30.0%
TATACGAAATGACAATTGTC+AGG + chr2_2:36722986-36723005 None:intergenic 30.0%
! TTTTTCTCCTATGTCATCTA+TGG - chr2_2:36723032-36723051 Msa0249640:intron 30.0%
ATTTACTCCATAGATGACAT+AGG + chr2_2:36723042-36723061 None:intergenic 30.0%
!! TTTATTTTCTAACTCTAGGG+TGG + chr2_2:36723368-36723387 None:intergenic 30.0%
!!! CCTCTTTATTTTCTAACTCT+AGG + chr2_2:36723372-36723391 None:intergenic 30.0%
CCTAGAGTTAGAAAATAAAG+AGG - chr2_2:36723369-36723388 Msa0249640:intron 30.0%
GTAAAGAGGTAAATAAAGAG+TGG - chr2_2:36723391-36723410 Msa0249640:intron 30.0%
!! TCAATAATGGATAAGGGTAT+TGG + chr2_2:36723436-36723455 None:intergenic 30.0%
ATGTCCCATTAGAAAATAGA+GGG + chr2_2:36723986-36724005 None:intergenic 30.0%
TATGTCCCATTAGAAAATAG+AGG + chr2_2:36723987-36724006 None:intergenic 30.0%
! AATCTCATTCAAGGAGTTTT+TGG - chr2_2:36724092-36724111 Msa0249640:intron 30.0%
GAAAAAAATGCAGAAAGCTA+GGG - chr2_2:36724114-36724133 Msa0249640:intron 30.0%
TCTCACTAACTGAACTTAAA+CGG - chr2_2:36724181-36724200 Msa0249640:intron 30.0%
CACAAATCCCCTTATATTTA+AGG + chr2_2:36724239-36724258 None:intergenic 30.0%
GTTGTTTAGTTAAACCTCAA+AGG - chr2_2:36724258-36724277 Msa0249640:intron 30.0%
TATTCGAGAGAAAATTACGA+GGG + chr2_2:36724518-36724537 None:intergenic 30.0%
TTATTCGAGAGAAAATTACG+AGG + chr2_2:36724519-36724538 None:intergenic 30.0%
AGATGAATTCTTAGTTAGCT+AGG + chr2_2:36724672-36724691 None:intergenic 30.0%
TGGAAGAGTCTAATAATTCA+AGG + chr2_2:36724701-36724720 None:intergenic 30.0%
TCTAATATGATCAGCAATCA+TGG + chr2_2:36724721-36724740 None:intergenic 30.0%
CAAGAAAAAAGAGTCCATTA+GGG + chr2_2:36724913-36724932 None:intergenic 30.0%
ACAAGAAAAAAGAGTCCATT+AGG + chr2_2:36724914-36724933 None:intergenic 30.0%
TCATTCTATGCAACAGTATA+TGG - chr2_2:36725099-36725118 Msa0249640:CDS 30.0%
TATCATTTCTTAGCAATGGT+TGG + chr2_2:36725218-36725237 None:intergenic 30.0%
!!! GTTTTGTTTTGTTGCATATG+AGG - chr2_2:36725267-36725286 Msa0249640:five_prime_UTR 30.0%
GAGGGATATTAGATTGAGAA+CGG + chr2_2:36719363-36719382 None:intergenic 35.0%
GATGATGACACGAAAATAGA+GGG + chr2_2:36719381-36719400 None:intergenic 35.0%
! TATGGGAGAAGACTTTTTGA+AGG + chr2_2:36719403-36719422 None:intergenic 35.0%
! ACATTGAGGGTTGAGAATTT+TGG + chr2_2:36719513-36719532 None:intergenic 35.0%
TTTCACATCTGCTACATTGA+GGG + chr2_2:36719526-36719545 None:intergenic 35.0%
AACTGTTGCTCTTCATTGAA+AGG + chr2_2:36719645-36719664 None:intergenic 35.0%
!! TGATGATTCTGTGTTGCTTT+CGG + chr2_2:36719856-36719875 None:intergenic 35.0%
CAATACAAAGCAGACATACT+TGG - chr2_2:36719888-36719907 Msa0249640:CDS 35.0%
ATAGAAGCTGATCGTAAAGA+GGG + chr2_2:36719917-36719936 None:intergenic 35.0%
! AAGTACTCTTCACTTGCTAA+TGG - chr2_2:36720029-36720048 Msa0249640:intron 35.0%
!! TAATGGTGTTGTGGATGAAA+AGG - chr2_2:36720046-36720065 Msa0249640:intron 35.0%
AAAGGAGCTTGATCAATTCA+TGG - chr2_2:36720064-36720083 Msa0249640:intron 35.0%
TCAACAAACTCCGAAAATTC+AGG + chr2_2:36720451-36720470 None:intergenic 35.0%
AAAAAACAGTAAACGAGGAG+AGG - chr2_2:36720480-36720499 Msa0249640:intron 35.0%
! GACTCTCTTTTCCTTATTAG+AGG + chr2_2:36720600-36720619 None:intergenic 35.0%
! TTTATTCCCCATTTGTTGCA+AGG - chr2_2:36720730-36720749 Msa0249640:intron 35.0%
ATTGATCCTTGCAACAAATG+GGG + chr2_2:36720739-36720758 None:intergenic 35.0%
CAATTGATCCTTGCAACAAA+TGG + chr2_2:36720741-36720760 None:intergenic 35.0%
CGACTTGAATCTTAATCTGA+TGG - chr2_2:36720775-36720794 Msa0249640:intron 35.0%
AAACCAGTAACGTATACGAA+GGG + chr2_2:36720832-36720851 None:intergenic 35.0%
! CGCAAATTATTGATGGTAGT+TGG - chr2_2:36720864-36720883 Msa0249640:intron 35.0%
CAATTTATGACATAGGACTG+TGG - chr2_2:36721181-36721200 Msa0249640:intron 35.0%
ATTTATGACATAGGACTGTG+GGG - chr2_2:36721183-36721202 Msa0249640:intron 35.0%
! CGGTTGATTTATCAATTCAG+CGG + chr2_2:36721489-36721508 None:intergenic 35.0%
TAATAGCATGTTTGTGCAAG+CGG + chr2_2:36721509-36721528 None:intergenic 35.0%
CATGTTGTTGATGTTGTAAG+TGG - chr2_2:36721672-36721691 Msa0249640:intron 35.0%
ATGCAGGAAACTTGAATGTA+GGG + chr2_2:36722072-36722091 None:intergenic 35.0%
AATGCAGGAAACTTGAATGT+AGG + chr2_2:36722073-36722092 None:intergenic 35.0%
TTATCTTTGCAAATGGTACG+TGG + chr2_2:36722403-36722422 None:intergenic 35.0%
TTATATGAAGGAAGCCTTGA+CGG - chr2_2:36722526-36722545 Msa0249640:intron 35.0%
!! ATAATGGATAAGGGTATTGG+AGG + chr2_2:36723433-36723452 None:intergenic 35.0%
TGTCCCATTAGAAAATAGAG+GGG + chr2_2:36723985-36724004 None:intergenic 35.0%
GGAAAAAAATGCAGAAAGCT+AGG - chr2_2:36724113-36724132 Msa0249640:intron 35.0%
CACAACCATCATAACTTAAG+AGG - chr2_2:36724137-36724156 Msa0249640:intron 35.0%
CTTTGCCTCTTAAGTTATGA+TGG + chr2_2:36724145-36724164 None:intergenic 35.0%
! ACTTAAACGGTGTTAACTTC+AGG - chr2_2:36724194-36724213 Msa0249640:intron 35.0%
! CTTAAACGGTGTTAACTTCA+GGG - chr2_2:36724195-36724214 Msa0249640:intron 35.0%
! TTAAACGGTGTTAACTTCAG+GGG - chr2_2:36724196-36724215 Msa0249640:intron 35.0%
GTTTAGTTAAACCTCAAAGG+AGG - chr2_2:36724261-36724280 Msa0249640:intron 35.0%
AATTACACTTACCTCCTTTG+AGG + chr2_2:36724275-36724294 None:intergenic 35.0%
! TATGCTTGACTTGACACATT+GGG + chr2_2:36724551-36724570 None:intergenic 35.0%
! ATATGCTTGACTTGACACAT+TGG + chr2_2:36724552-36724571 None:intergenic 35.0%
ATCCGTACTAGTAATGATCA+AGG - chr2_2:36724590-36724609 Msa0249640:intron 35.0%
CTCCTTGATCATTACTAGTA+CGG + chr2_2:36724595-36724614 None:intergenic 35.0%
CATTATTAATTCCCCAGTCA+TGG + chr2_2:36724622-36724641 None:intergenic 35.0%
AGTTAGCTAGGCACATTAAT+TGG + chr2_2:36724660-36724679 None:intergenic 35.0%
TTAATTGAAGTCCTGTTTCC+TGG + chr2_2:36724786-36724805 None:intergenic 35.0%
!!! GGTGAGTTTTATTTCCCTAA+TGG - chr2_2:36724896-36724915 Msa0249640:CDS 35.0%
AACCAGAGTTTCATGTGATT+TGG - chr2_2:36725020-36725039 Msa0249640:CDS 35.0%
TTGTTTCCTTGTTCGAAACA+GGG + chr2_2:36725048-36725067 None:intergenic 35.0%
TTTGTTTCCTTGTTCGAAAC+AGG + chr2_2:36725049-36725068 None:intergenic 35.0%
TTCGAACAAGGAAACAAAGA+TGG - chr2_2:36725051-36725070 Msa0249640:CDS 35.0%
TTCTATGCAACAGTATATGG+TGG - chr2_2:36725102-36725121 Msa0249640:CDS 35.0%
TCTATGCAACAGTATATGGT+GGG - chr2_2:36725103-36725122 Msa0249640:CDS 35.0%
! TATATGGTGGGACATTTGAT+AGG - chr2_2:36725115-36725134 Msa0249640:exon 35.0%
TGAAAAACATGAAACTCGTG+TGG - chr2_2:36725156-36725175 Msa0249640:five_prime_UTR 35.0%
TTTGTTGCATATGAGGCTAA+CGG - chr2_2:36725274-36725293 Msa0249640:five_prime_UTR 35.0%
GGATGATGACACGAAAATAG+AGG + chr2_2:36719382-36719401 None:intergenic 40.0%
TTAGAACTAGGTAGGAGAAG+TGG + chr2_2:36719462-36719481 None:intergenic 40.0%
!! TGAGGGTTGAGAATTTTGGT+GGG + chr2_2:36719509-36719528 None:intergenic 40.0%
! TTGAGGGTTGAGAATTTTGG+TGG + chr2_2:36719510-36719529 None:intergenic 40.0%
GTTTCACATCTGCTACATTG+AGG + chr2_2:36719527-36719546 None:intergenic 40.0%
CAAAGACTACTACCATTCAC+CGG - chr2_2:36719684-36719703 Msa0249640:exon 40.0%
GTGATGTATCTGGTTGTAAG+TGG + chr2_2:36719776-36719795 None:intergenic 40.0%
ACCAGATACATCACAAAACG+AGG - chr2_2:36719782-36719801 Msa0249640:intron 40.0%
! TCCTCGTTTTGTGATGTATC+TGG + chr2_2:36719786-36719805 None:intergenic 40.0%
! CGTAAGAGGTATGAACATGA+TGG - chr2_2:36719806-36719825 Msa0249640:intron 40.0%
! TGAACATGATGGAGAAAACC+CGG - chr2_2:36719817-36719836 Msa0249640:intron 40.0%
AAGCAACACAGAATCATCAG+AGG - chr2_2:36719857-36719876 Msa0249640:CDS 40.0%
GATAGAAGCTGATCGTAAAG+AGG + chr2_2:36719918-36719937 None:intergenic 40.0%
! TTCACTTGCTAATGGTGTTG+TGG - chr2_2:36720037-36720056 Msa0249640:intron 40.0%
AGTAAACGAGGAGAGGATAA+TGG - chr2_2:36720487-36720506 Msa0249640:intron 40.0%
AACCAGTAACGTATACGAAG+GGG + chr2_2:36720831-36720850 None:intergenic 40.0%
CAAACCAGTAACGTATACGA+AGG + chr2_2:36720833-36720852 None:intergenic 40.0%
! GTGGCATAAATTGGTGACAT+CGG + chr2_2:36721336-36721355 None:intergenic 40.0%
! GTCACCAATTTATGCCACTT+CGG - chr2_2:36721338-36721357 Msa0249640:intron 40.0%
TCATCCGAAGTGGCATAAAT+TGG + chr2_2:36721345-36721364 None:intergenic 40.0%
TTATGGTGTGTTCGGATTCA+CGG - chr2_2:36721374-36721393 Msa0249640:intron 40.0%
TTAAAAATTACCTCGGGACG+TGG + chr2_2:36721414-36721433 None:intergenic 40.0%
! GTTCTTTAAAAGCACAGAGC+AGG + chr2_2:36722242-36722261 None:intergenic 40.0%
GTTCATGCATGCATCATGTA+TGG + chr2_2:36722430-36722449 None:intergenic 40.0%
TACATGATGCATGCATGAAC+AGG - chr2_2:36722430-36722449 Msa0249640:CDS 40.0%
TCACTTTCAGTAGGAACAAG+AGG + chr2_2:36722574-36722593 None:intergenic 40.0%
GATCTTTAATGGAACGTGTG+AGG - chr2_2:36722596-36722615 Msa0249640:intron 40.0%
GGGTTACAAGAGTAAGATTG+TGG - chr2_2:36722829-36722848 Msa0249640:intron 40.0%
AATTCTACGGAAGAGAAGAG+CGG - chr2_2:36722865-36722884 Msa0249640:intron 40.0%
TTTGTTAGGCGACAAGCTAA+CGG + chr2_2:36723343-36723362 None:intergenic 40.0%
TAATGGAACAAGTTCCCATG+AGG - chr2_2:36723761-36723780 Msa0249640:intron 40.0%
AATGGAACAAGTTCCCATGA+GGG - chr2_2:36723762-36723781 Msa0249640:intron 40.0%
! ACACCCCCTCTATTTTCTAA+TGG - chr2_2:36723978-36723997 Msa0249640:intron 40.0%
! CACCCCCTCTATTTTCTAAT+GGG - chr2_2:36723979-36723998 Msa0249640:intron 40.0%
GTCCCATTAGAAAATAGAGG+GGG + chr2_2:36723984-36724003 None:intergenic 40.0%
AGACTCGTGAATGTACTTCT+AGG - chr2_2:36724738-36724757 Msa0249640:CDS 40.0%
! GTACTTCTAGGAAGAAGACA+AGG - chr2_2:36724750-36724769 Msa0249640:CDS 40.0%
TAAAACTCACCTCTTGCGTT+TGG + chr2_2:36724887-36724906 None:intergenic 40.0%
TGCCAAATCACATGAAACTC+TGG + chr2_2:36725025-36725044 None:intergenic 40.0%
AAAACATGAAACTCGTGTGG+TGG - chr2_2:36725159-36725178 Msa0249640:five_prime_UTR 40.0%
GAGAGGAGTTAGAACTAGGT+AGG + chr2_2:36719470-36719489 None:intergenic 45.0%
GAAAATTGTAGGTGTGGGAG+AGG + chr2_2:36719487-36719506 None:intergenic 45.0%
GGTGGGAAAATTGTAGGTGT+GGG + chr2_2:36719492-36719511 None:intergenic 45.0%
TGGTGGGAAAATTGTAGGTG+TGG + chr2_2:36719493-36719512 None:intergenic 45.0%
TCAACAACGCCGTAAACCTA+CGG - chr2_2:36719736-36719755 Msa0249640:intron 45.0%
ATTCTGCTGCCGTAGGTTTA+CGG + chr2_2:36719748-36719767 None:intergenic 45.0%
TCACAAAACGAGGACGTAAG+AGG - chr2_2:36719792-36719811 Msa0249640:intron 45.0%
! GAACATGATGGAGAAAACCC+GGG - chr2_2:36719818-36719837 Msa0249640:intron 45.0%
GTAACGTATACGAAGGGGAA+AGG + chr2_2:36720826-36720845 None:intergenic 45.0%
TTCCCCTTCGTATACGTTAC+TGG - chr2_2:36720826-36720845 Msa0249640:intron 45.0%
TCATGCCATGGAAGCTGTTA+TGG - chr2_2:36722284-36722303 Msa0249640:intron 45.0%
ACAAGCCATAACAGCTTCCA+TGG + chr2_2:36722292-36722311 None:intergenic 45.0%
! TGGAAGCTGTTATGGCTTGT+TGG - chr2_2:36722292-36722311 Msa0249640:intron 45.0%
!! GGAAGCTGTTATGGCTTGTT+GGG - chr2_2:36722293-36722312 Msa0249640:intron 45.0%
CAGTCTCTACAAAGCTTGAC+CGG - chr2_2:36722324-36722343 Msa0249640:intron 45.0%
GCAAATGGTACGTGGATGAT+TGG + chr2_2:36722395-36722414 None:intergenic 45.0%
AGTTTGCATTGCTCTCTGCT+TGG + chr2_2:36722507-36722526 None:intergenic 45.0%
TTTAATGGAACGTGTGAGGC+AGG - chr2_2:36722600-36722619 Msa0249640:intron 45.0%
GTTGAAGCACGAGCTAAAAC+AGG - chr2_2:36722624-36722643 Msa0249640:intron 45.0%
ATTCTACGGAAGAGAAGAGC+GGG - chr2_2:36722866-36722885 Msa0249640:intron 45.0%
TTGCCACCAAGCTTTCAGAA+GGG + chr2_2:36722915-36722934 None:intergenic 45.0%
ATTGCCACCAAGCTTTCAGA+AGG + chr2_2:36722916-36722935 None:intergenic 45.0%
GGTGGCAATCACACTCTAAA+TGG - chr2_2:36722927-36722946 Msa0249640:intron 45.0%
!! ACTCTAGGGTGGAGTTTGTT+AGG + chr2_2:36723357-36723376 None:intergenic 45.0%
TCTAGGAAGAAGACAAGGCT+AGG - chr2_2:36724755-36724774 Msa0249640:CDS 45.0%
ACTAATCCTTCGTCTTCCAC+TGG - chr2_2:36724853-36724872 Msa0249640:CDS 45.0%
!! TCACCTCTTGCGTTTGGTTT+TGG + chr2_2:36724881-36724900 None:intergenic 45.0%
! CTTTTCAATAGTAGTGGCGC+AGG - chr2_2:36724987-36725006 Msa0249640:CDS 45.0%
!!! TTTTATTTTTAAAAAAATGT+TGG - chr2_2:36720530-36720549 Msa0249640:intron 5.0%
!!! AATAATACTTTTAATATTAA+TGG - chr2_2:36723744-36723763 Msa0249640:intron 5.0%
GGTGGAAGAGAGAAGAGGTT+TGG + chr2_2:36719441-36719460 None:intergenic 50.0%
! GAAGTGGTGGAAGAGAGAAG+AGG + chr2_2:36719446-36719465 None:intergenic 50.0%
GAACTAGGTAGGAGAAGTGG+TGG + chr2_2:36719459-36719478 None:intergenic 50.0%
GTGGGAGAGGAGTTAGAACT+AGG + chr2_2:36719474-36719493 None:intergenic 50.0%
ACGGCGTTGTTGAGCCAATT+CGG + chr2_2:36719729-36719748 None:intergenic 50.0%
GGAGAAAATTCTGCTGCCGT+AGG + chr2_2:36719755-36719774 None:intergenic 50.0%
TGATGGAGAAAACCCGGGAT+CGG - chr2_2:36719823-36719842 Msa0249640:intron 50.0%
!! ATTCTGTGTTGCTTTCGGCC+CGG + chr2_2:36719851-36719870 None:intergenic 50.0%
CAACTGCAGCATCCTAAGTC+AGG + chr2_2:36720655-36720674 None:intergenic 50.0%
CTTAGGATGCTGCAGTTGTG+AGG - chr2_2:36720657-36720676 Msa0249640:intron 50.0%
!!! GGGACGTGGAAAAGGTGTTT+TGG + chr2_2:36721400-36721419 None:intergenic 50.0%
ATTACCTCGGGACGTGGAAA+AGG + chr2_2:36721408-36721427 None:intergenic 50.0%
AGGTAGCTTCTCCTCAAACG+TGG - chr2_2:36721456-36721475 Msa0249640:intron 50.0%
GGTAGCTTCTCCTCAAACGT+GGG - chr2_2:36721457-36721476 Msa0249640:intron 50.0%
ACATGTCCGTGTTCATGCCA+TGG - chr2_2:36722272-36722291 Msa0249640:intron 50.0%
CAGCTTCCATGGCATGAACA+CGG + chr2_2:36722281-36722300 None:intergenic 50.0%
!! TGTTATGGCTTGTTGGGAGC+TGG - chr2_2:36722299-36722318 Msa0249640:intron 50.0%
GCATGAACAGGTGTATCTCC+TGG - chr2_2:36722442-36722461 Msa0249640:CDS 50.0%
ACAGGTGTATCTCCTGGTGA+AGG - chr2_2:36722448-36722467 Msa0249640:CDS 50.0%
CAGGTGTATCTCCTGGTGAA+GGG - chr2_2:36722449-36722468 Msa0249640:CDS 50.0%
AGGGAGTGGTGCAACAATGT+CGG - chr2_2:36722468-36722487 Msa0249640:CDS 50.0%
TATGAAGGAAGCCTTGACGG+CGG - chr2_2:36722529-36722548 Msa0249640:intron 50.0%
! CAACCTCCCTTCTGAAAGCT+TGG - chr2_2:36722906-36722925 Msa0249640:intron 50.0%
ATCAAGGAGACAGCCATGAC+TGG - chr2_2:36724606-36724625 Msa0249640:intron 50.0%
TCAAGGAGACAGCCATGACT+GGG - chr2_2:36724607-36724626 Msa0249640:intron 50.0%
GGAAGAAGACAAGGCTAGGT+TGG - chr2_2:36724759-36724778 Msa0249640:CDS 50.0%
GCTCCAAAACCAAACGCAAG+AGG - chr2_2:36724875-36724894 Msa0249640:CDS 50.0%
TTGGCACCCTGTTTCGAACA+AGG - chr2_2:36725039-36725058 Msa0249640:CDS 50.0%
CTACTACCATTCACCGGAGC+CGG - chr2_2:36719690-36719709 Msa0249640:CDS 55.0%
AGAAAACCCGGGATCGGAAC+CGG - chr2_2:36719829-36719848 Msa0249640:intron 55.0%
! AACACCTTTTCCACGTCCCG+AGG - chr2_2:36721401-36721420 Msa0249640:intron 55.0%
GCGGCAAAAACCCACGTTTG+AGG + chr2_2:36721470-36721489 None:intergenic 55.0%
GTATCTCCTGGTGAAGGGAG+TGG - chr2_2:36722454-36722473 Msa0249640:CDS 55.0%
TGAGACTATCACCGCCGTCA+AGG + chr2_2:36722543-36722562 None:intergenic 55.0%
GGCGGTGATAGTCTCAGCTT+TGG - chr2_2:36722547-36722566 Msa0249640:intron 55.0%
GAAGGGAGGTTGTGTCACCT+GGG + chr2_2:36722898-36722917 None:intergenic 55.0%
AGAAGGGAGGTTGTGTCACC+TGG + chr2_2:36722899-36722918 None:intergenic 55.0%
CCACCAAGCTTTCAGAAGGG+AGG + chr2_2:36722912-36722931 None:intergenic 55.0%
! CCTCCCTTCTGAAAGCTTGG+TGG - chr2_2:36722909-36722928 Msa0249640:intron 55.0%
!! AGCGGGACTAGCTAGTAACG+TGG - chr2_2:36723291-36723310 Msa0249640:intron 55.0%
TGGCTTCTCTAGCAAGAGCG+TGG - chr2_2:36723311-36723330 Msa0249640:intron 55.0%
! GGCTTCTCTAGCAAGAGCGT+GGG - chr2_2:36723312-36723331 Msa0249640:intron 55.0%
CAAGGAGACAGCCATGACTG+GGG - chr2_2:36724608-36724627 Msa0249640:intron 55.0%
!! AGACAAGGCTAGGTTGGTCC+AGG - chr2_2:36724765-36724784 Msa0249640:CDS 55.0%
!! GCTAGGTTGGTCCAGGAAAC+AGG - chr2_2:36724772-36724791 Msa0249640:CDS 55.0%
TTGGAGCCAGTGGAAGACGA+AGG + chr2_2:36724862-36724881 None:intergenic 55.0%
!!! GCGTTTGGTTTTGGAGCCAG+TGG + chr2_2:36724872-36724891 None:intergenic 55.0%
!! GAGCCAATTCGGCGCTGATC+CGG + chr2_2:36719718-36719737 None:intergenic 60.0%
GAAAACCCGGGATCGGAACC+GGG - chr2_2:36719830-36719849 Msa0249640:CDS 60.0%
ATCCGCGGAAGCTGATCGAC+GGG + chr2_2:36719972-36719991 None:intergenic 60.0%
GATCCGCGGAAGCTGATCGA+CGG + chr2_2:36719973-36719992 None:intergenic 60.0%
! TGAAGCTGTGCGTCGATCCG+CGG + chr2_2:36719987-36720006 None:intergenic 60.0%
GTTGCACCACTCCCTTCACC+AGG + chr2_2:36722463-36722482 None:intergenic 60.0%
AGAAGAGCGGGAAAGCTCCC+AGG - chr2_2:36722878-36722897 Msa0249640:intron 60.0%
!! ATTCGGCGCTGATCCGGCAC+CGG + chr2_2:36719712-36719731 None:intergenic 65.0%
! GTGCCGGATCAGCGCCGAAT+TGG - chr2_2:36719712-36719731 Msa0249640:intron 65.0%
TTTCGGCCCGGTTCCGATCC+CGG + chr2_2:36719839-36719858 None:intergenic 65.0%
CCATTCACCGGAGCCGGTGC+CGG - chr2_2:36719696-36719715 Msa0249640:CDS 70.0%
TTCGGCCCGGTTCCGATCCC+GGG + chr2_2:36719838-36719857 None:intergenic 70.0%
CGCCCGTCGATCAGCTTCCG+CGG - chr2_2:36719967-36719986 Msa0249640:intron 70.0%
GCTTCAGCAGTCGCAGCGCG+TGG - chr2_2:36720001-36720020 Msa0249640:intron 70.0%
TCAGCAGTCGCAGCGCGTGG+TGG - chr2_2:36720004-36720023 Msa0249640:intron 70.0%
!! CCGGCACCGGCTCCGGTGAA+TGG + chr2_2:36719699-36719718 None:intergenic 75.0%
!! CGCTGATCCGGCACCGGCTC+CGG + chr2_2:36719706-36719725 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 36719353 36725373 36719353 ID=Msa0249640;Name=Msa0249640
chr2_2 mRNA 36719353 36725373 36719353 ID=Msa0249640-mRNA-1;Parent=Msa0249640;Name=Msa0249640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=244|1|1|1|1|1|6|336|370
chr2_2 exon 36719353 36719728 36719353 ID=Msa0249640-mRNA-1:exon:11722;Parent=Msa0249640-mRNA-1
chr2_2 exon 36719830 36719966 36719830 ID=Msa0249640-mRNA-1:exon:11721;Parent=Msa0249640-mRNA-1
chr2_2 exon 36721765 36721896 36721765 ID=Msa0249640-mRNA-1:exon:11720;Parent=Msa0249640-mRNA-1
chr2_2 exon 36722081 36722274 36722081 ID=Msa0249640-mRNA-1:exon:11719;Parent=Msa0249640-mRNA-1
chr2_2 exon 36722381 36722501 36722381 ID=Msa0249640-mRNA-1:exon:11718;Parent=Msa0249640-mRNA-1
chr2_2 exon 36724641 36725373 36724641 ID=Msa0249640-mRNA-1:exon:11717;Parent=Msa0249640-mRNA-1
chr2_2 five_prime_UTR 36725130 36725373 36725130 ID=Msa0249640-mRNA-1:five_prime_utr;Parent=Msa0249640-mRNA-1
chr2_2 CDS 36724641 36725129 36724641 ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1
chr2_2 CDS 36722381 36722501 36722381 ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1
chr2_2 CDS 36722081 36722274 36722081 ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1
chr2_2 CDS 36721765 36721896 36721765 ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1
chr2_2 CDS 36719830 36719966 36719830 ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1
chr2_2 CDS 36719689 36719728 36719689 ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1
chr2_2 three_prime_UTR 36719353 36719688 36719353 ID=Msa0249640-mRNA-1:three_prime_utr;Parent=Msa0249640-mRNA-1
Gene Sequence

>Msa0249640

ATGGCTTTTCATCATGACCATCTCTCTCATGAAATCAATTTTCAACCTTTCAATGAAGAGCAACAGTTAAATCAAAGCAGAGATATGCAAAGACTACTACCATTCACCGGAGCCGGTGCCGGATCAGCGCCGAATTGGCTCAACAACGCCGTAAACCTACGGCAGCAGAATTTTCTCCACTTACAACCAGATACATCACAAAACGAGGACGTAAGAGGTATGAACATGATGGAGAAAACCCGGGATCGGAACCGGGCCGAAAGCAACACAGAATCATCAGAGGAGTTATCACAATACAAAGCAGACATACTTGGACACCCTCTTTACGATCAGCTTCTATCTGCTCATGTTTCGTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAAAAGGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTCTGTGCTTTTAAAGAACAATTACAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGTGAAGGGAGTGGTGCAACAATGTCGGACGATGAAGATGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGACGGCGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCACGAGCTAAAACAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTCCCAGGTGACACAACCTCCCTTCTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCTACTGAAGAAGACAAGGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGCAAGAGTAGTGGCGCAGGTGAAACAAGTAACCAGAGTTTCATGTGA

Protein sequence

>Msa0249640

MAFHHDHLSHEINFQPFNEEQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGMNMMEKTRDRNRAESNTESSEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM*