Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249640 | XP_013464062.1 | 97.581 | 372 | 2 | 2 | 1 | 370 | 1 | 367 | 0.0 | 747 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249640 | sp|P48000|KNAT3_ARATH | 59.217 | 434 | 108 | 9 | 1 | 369 | 1 | 430 | 1.14e-164 | 470 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249640 | A0A072V8D4 | 97.581 | 372 | 2 | 2 | 1 | 370 | 1 | 367 | 0.0 | 747 |
Gene ID | Type | Classification |
---|---|---|
Msa0249640 | TF | HB-KNOX |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0206730 | Msa0249640 | 0.840747 | 7.218723e-58 | -8.615850e-47 |
Msa0249640 | Msa0288020 | 0.929605 | 5.465874e-93 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249640 | MtrunA17_Chr2g0305101 | 97.312 | 372 | 2 | 3 | 1 | 370 | 1 | 366 | 0.0 | 741 |
Msa0249640 | MtrunA17_Chr4g0065241 | 72.386 | 373 | 68 | 8 | 1 | 370 | 1 | 341 | 0.0 | 505 |
Msa0249640 | MtrunA17_Chr1g0149651 | 81.648 | 267 | 45 | 2 | 95 | 357 | 169 | 435 | 2.57e-164 | 467 |
Msa0249640 | MtrunA17_Chr3g0137241 | 66.667 | 345 | 83 | 7 | 42 | 357 | 29 | 370 | 1.49e-157 | 447 |
Msa0249640 | MtrunA17_Chr5g0398181 | 67.669 | 266 | 80 | 2 | 98 | 357 | 26 | 291 | 2.38e-127 | 368 |
Msa0249640 | MtrunA17_Chr1g0151961 | 33.333 | 243 | 142 | 5 | 100 | 342 | 120 | 342 | 3.52e-29 | 116 |
Msa0249640 | MtrunA17_Chr1g0192791 | 34.146 | 246 | 139 | 6 | 100 | 342 | 20 | 245 | 6.70e-29 | 113 |
Msa0249640 | MtrunA17_Chr2g0289201 | 31.020 | 245 | 142 | 6 | 100 | 342 | 118 | 337 | 9.17e-29 | 115 |
Msa0249640 | MtrunA17_Chr5g0413201 | 34.553 | 246 | 134 | 5 | 100 | 342 | 73 | 294 | 1.44e-28 | 113 |
Msa0249640 | MtrunA17_Chr5g0439391 | 31.174 | 247 | 130 | 4 | 103 | 342 | 50 | 263 | 1.59e-24 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0249640 | AT5G25220.1 | 59.217 | 434 | 108 | 9 | 1 | 369 | 1 | 430 | 1.16e-165 | 470 |
Msa0249640 | AT5G11060.1 | 82.909 | 275 | 39 | 4 | 97 | 367 | 121 | 391 | 3.00e-165 | 468 |
Msa0249640 | AT5G25220.2 | 84.906 | 265 | 33 | 3 | 97 | 357 | 157 | 418 | 6.67e-164 | 465 |
Msa0249640 | AT4G32040.1 | 74.906 | 267 | 63 | 4 | 97 | 360 | 116 | 381 | 1.18e-142 | 410 |
Msa0249640 | AT4G32040.2 | 77.419 | 248 | 53 | 3 | 97 | 342 | 116 | 362 | 8.84e-142 | 407 |
Msa0249640 | AT1G62990.1 | 66.791 | 268 | 86 | 3 | 93 | 357 | 23 | 290 | 1.75e-127 | 368 |
Msa0249640 | AT1G70510.1 | 33.730 | 252 | 144 | 6 | 91 | 342 | 61 | 289 | 7.59e-31 | 119 |
Msa0249640 | AT4G08150.1 | 33.466 | 251 | 134 | 6 | 100 | 342 | 135 | 360 | 3.67e-30 | 119 |
Msa0249640 | AT1G23380.1 | 34.909 | 275 | 136 | 10 | 96 | 361 | 82 | 322 | 4.15e-30 | 118 |
Msa0249640 | AT1G70510.2 | 32.540 | 252 | 151 | 5 | 91 | 342 | 61 | 293 | 1.18e-29 | 116 |
Msa0249640 | AT1G23380.2 | 34.657 | 277 | 136 | 11 | 96 | 361 | 82 | 324 | 3.41e-28 | 113 |
Msa0249640 | AT1G62360.1 | 32.530 | 249 | 135 | 8 | 100 | 342 | 122 | 343 | 2.86e-23 | 100 |
Find 130 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACCTCTTGCGTTTGGTTT+TGG | 0.207700 | 2_2:+36719826 | None:intergenic |
TGAAAGTGAAAGATCTTTAA+TGG | 0.234617 | 2_2:-36722119 | Msa0249640:CDS |
TCATTCTATGCAACAGTATA+TGG | 0.238105 | 2_2:-36719605 | Msa0249640:three_prime_UTR |
TTTGTTTCCTTGTTCGAAAC+AGG | 0.279115 | 2_2:+36719658 | None:intergenic |
GGTGGCAATCACACTCTAAA+TGG | 0.296115 | 2_2:-36721777 | Msa0249640:CDS |
AACCAGAGTTTCATGTGATT+TGG | 0.304931 | 2_2:-36719684 | Msa0249640:exon |
ACATTGAGGGTTGAGAATTT+TGG | 0.305745 | 2_2:+36725194 | None:intergenic |
ATTCTGCTGCCGTAGGTTTA+CGG | 0.307392 | 2_2:+36724959 | None:intergenic |
TTAATTGAAGTCCTGTTTCC+TGG | 0.314760 | 2_2:+36719921 | None:intergenic |
AATTAAAGCAAATAAATAAC+TGG | 0.337783 | 2_2:-36719904 | Msa0249640:CDS |
TGATGATTCTGTGTTGCTTT+CGG | 0.340218 | 2_2:+36724851 | None:intergenic |
GGTTCATTAATCAAAGAAAA+AGG | 0.346232 | 2_2:-36719883 | Msa0249640:CDS |
TCATGCCATGGAAGCTGTTA+TGG | 0.355360 | 2_2:-36722420 | Msa0249640:CDS |
CGCTGATCCGGCACCGGCTC+CGG | 0.366320 | 2_2:+36725001 | None:intergenic |
TAAAACTCACCTCTTGCGTT+TGG | 0.382625 | 2_2:+36719820 | None:intergenic |
AGAAGGGAGGTTGTGTCACC+TGG | 0.383923 | 2_2:+36721808 | None:intergenic |
GCTAGGTTGGTCCAGGAAAC+AGG | 0.387799 | 2_2:-36719932 | Msa0249640:CDS |
TTTCGGCCCGGTTCCGATCC+CGG | 0.391273 | 2_2:+36724868 | None:intergenic |
GTGCCGGATCAGCGCCGAAT+TGG | 0.392791 | 2_2:-36724992 | Msa0249640:CDS |
TTCGGCCCGGTTCCGATCCC+GGG | 0.394283 | 2_2:+36724869 | None:intergenic |
AGAAAACCCGGGATCGGAAC+CGG | 0.397626 | 2_2:-36724875 | Msa0249640:CDS |
GGAAGCTGTTATGGCTTGTT+GGG | 0.411048 | 2_2:-36722411 | Msa0249640:CDS |
TGGAAGCTGTTATGGCTTGT+TGG | 0.413199 | 2_2:-36722412 | Msa0249640:CDS |
GAGCCAATTCGGCGCTGATC+CGG | 0.419648 | 2_2:+36724989 | None:intergenic |
GGTGGAAGAGAGAAGAGGTT+TGG | 0.421511 | 2_2:+36725266 | None:intergenic |
AAAGGAGCTTGATCAATTCA+TGG | 0.424580 | 2_2:-36724640 | Msa0249640:intron |
CCGGCACCGGCTCCGGTGAA+TGG | 0.444652 | 2_2:+36725008 | None:intergenic |
CAATACAAAGCAGACATACT+TGG | 0.452763 | 2_2:-36724816 | Msa0249640:CDS |
AAGTACTCTTCACTTGCTAA+TGG | 0.452773 | 2_2:-36724675 | Msa0249640:CDS |
TGTTATGGCTTGTTGGGAGC+TGG | 0.458320 | 2_2:-36722405 | Msa0249640:CDS |
ACGGCGTTGTTGAGCCAATT+CGG | 0.459617 | 2_2:+36724978 | None:intergenic |
AAAGTGAATAATTAAGCAAA+TGG | 0.462491 | 2_2:-36725126 | Msa0249640:exon |
TATATGGTGGGACATTTGAT+AGG | 0.466351 | 2_2:-36719589 | Msa0249640:three_prime_UTR |
GCTAAGAAATGATATTTACT+TGG | 0.467901 | 2_2:-36719480 | Msa0249640:three_prime_UTR |
GGATGATGACACGAAAATAG+AGG | 0.469838 | 2_2:+36725325 | None:intergenic |
AACTGTTGCTCTTCATTGAA+AGG | 0.470953 | 2_2:+36725062 | None:intergenic |
TTAAAACTTACAGTAGGATA+AGG | 0.472729 | 2_2:+36721754 | None:intergenic |
GTTGAAGCACGAGCTAAAAC+AGG | 0.474198 | 2_2:-36722080 | Msa0249640:intron |
GGCGGTGATAGTCTCAGCTT+TGG | 0.476775 | 2_2:-36722157 | Msa0249640:CDS |
CAACCTCCCTTCTGAAAGCT+TGG | 0.477528 | 2_2:-36721798 | Msa0249640:CDS |
TAAATATCATTTCTTAGCAA+TGG | 0.479464 | 2_2:+36719485 | None:intergenic |
TATCATTTCTTAGCAATGGT+TGG | 0.488327 | 2_2:+36719489 | None:intergenic |
GTTCTTTAAAAGCACAGAGC+AGG | 0.490015 | 2_2:+36722465 | None:intergenic |
TTCACTTGCTAATGGTGTTG+TGG | 0.493741 | 2_2:-36724667 | Msa0249640:CDS |
TTATATGAAGGAAGCCTTGA+CGG | 0.493987 | 2_2:-36722178 | Msa0249640:CDS |
AGAAGAGCGGGAAAGCTCCC+AGG | 0.495370 | 2_2:-36721826 | Msa0249640:CDS |
GAACTAGGTAGGAGAAGTGG+TGG | 0.496188 | 2_2:+36725248 | None:intergenic |
TTTAATGGAACGTGTGAGGC+AGG | 0.496599 | 2_2:-36722104 | Msa0249640:CDS |
AGTTTGCATTGCTCTCTGCT+TGG | 0.497350 | 2_2:+36722200 | None:intergenic |
TTTCACATCTGCTACATTGA+GGG | 0.501679 | 2_2:+36725181 | None:intergenic |
ATTCGGCGCTGATCCGGCAC+CGG | 0.502759 | 2_2:+36724995 | None:intergenic |
GAAAACCCGGGATCGGAACC+GGG | 0.504035 | 2_2:-36724874 | Msa0249640:CDS |
GAGAGGAGTTAGAACTAGGT+AGG | 0.504582 | 2_2:+36725237 | None:intergenic |
TCACAAAACGAGGACGTAAG+AGG | 0.506259 | 2_2:-36724912 | Msa0249640:CDS |
GTTTCACATCTGCTACATTG+AGG | 0.509716 | 2_2:+36725180 | None:intergenic |
TTGTTTCCTTGTTCGAAACA+GGG | 0.518015 | 2_2:+36719659 | None:intergenic |
CCTCCCTTCTGAAAGCTTGG+TGG | 0.525828 | 2_2:-36721795 | Msa0249640:CDS |
CTACTACCATTCACCGGAGC+CGG | 0.525885 | 2_2:-36725014 | Msa0249640:CDS |
AGCAATGCAAACTTATATGA+AGG | 0.526547 | 2_2:-36722190 | Msa0249640:CDS |
TGGTGGGAAAATTGTAGGTG+TGG | 0.527318 | 2_2:+36725214 | None:intergenic |
TTCGAACAAGGAAACAAAGA+TGG | 0.529320 | 2_2:-36719653 | Msa0249640:three_prime_UTR |
AAAGATCTTTCACTTTCAGT+AGG | 0.529421 | 2_2:+36722124 | None:intergenic |
ATCCGCGGAAGCTGATCGAC+GGG | 0.535334 | 2_2:+36724735 | None:intergenic |
AGACAAGGCTAGGTTGGTCC+AGG | 0.536981 | 2_2:-36719939 | Msa0249640:CDS |
GGTGGGAAAATTGTAGGTGT+GGG | 0.537060 | 2_2:+36725215 | None:intergenic |
GTATCTCCTGGTGAAGGGAG+TGG | 0.537968 | 2_2:-36722250 | Msa0249640:CDS |
GGAAGAAGACAAGGCTAGGT+TGG | 0.538207 | 2_2:-36719945 | Msa0249640:CDS |
CCATTCACCGGAGCCGGTGC+CGG | 0.539777 | 2_2:-36725008 | Msa0249640:CDS |
TTGGCACCCTGTTTCGAACA+AGG | 0.540002 | 2_2:-36719665 | Msa0249640:three_prime_UTR |
CAGTCTCTACAAAGCTTGAC+CGG | 0.543218 | 2_2:-36722380 | Msa0249640:intron |
GTGATGTATCTGGTTGTAAG+TGG | 0.546109 | 2_2:+36724931 | None:intergenic |
ACAAGCCATAACAGCTTCCA+TGG | 0.548095 | 2_2:+36722415 | None:intergenic |
GTGGGAGAGGAGTTAGAACT+AGG | 0.550223 | 2_2:+36725233 | None:intergenic |
GATAGAAGCTGATCGTAAAG+AGG | 0.552473 | 2_2:+36724789 | None:intergenic |
GATCCGCGGAAGCTGATCGA+CGG | 0.553108 | 2_2:+36724734 | None:intergenic |
ATTCTACGGAAGAGAAGAGC+GGG | 0.553812 | 2_2:-36721838 | Msa0249640:CDS |
TGCCAAATCACATGAAACTC+TGG | 0.553931 | 2_2:+36719682 | None:intergenic |
CGTAAGAGGTATGAACATGA+TGG | 0.558929 | 2_2:-36724898 | Msa0249640:CDS |
ATTCTGTGTTGCTTTCGGCC+CGG | 0.559067 | 2_2:+36724856 | None:intergenic |
TCACTTTCAGTAGGAACAAG+AGG | 0.559140 | 2_2:+36722133 | None:intergenic |
TGAAGCTGTGCGTCGATCCG+CGG | 0.565484 | 2_2:+36724720 | None:intergenic |
CCACCAAGCTTTCAGAAGGG+AGG | 0.569465 | 2_2:+36721795 | None:intergenic |
ATTGCCACCAAGCTTTCAGA+AGG | 0.570441 | 2_2:+36721791 | None:intergenic |
TAATGGTGTTGTGGATGAAA+AGG | 0.570805 | 2_2:-36724658 | Msa0249640:CDS |
ACAGGTGTATCTCCTGGTGA+AGG | 0.571753 | 2_2:-36722256 | Msa0249640:intron |
CGCCCGTCGATCAGCTTCCG+CGG | 0.571878 | 2_2:-36724737 | Msa0249640:CDS |
TTAGATTGAGAACGGATCCA+AGG | 0.572272 | 2_2:+36725352 | None:intergenic |
ACTAATCCTTCGTCTTCCAC+TGG | 0.572883 | 2_2:-36719851 | Msa0249640:CDS |
TGAACATGATGGAGAAAACC+CGG | 0.573901 | 2_2:-36724887 | Msa0249640:CDS |
TTAGAACTAGGTAGGAGAAG+TGG | 0.574150 | 2_2:+36725245 | None:intergenic |
TTCTATGCAACAGTATATGG+TGG | 0.575719 | 2_2:-36719602 | Msa0249640:three_prime_UTR |
GAAAATTGTAGGTGTGGGAG+AGG | 0.578747 | 2_2:+36725220 | None:intergenic |
GCTTCAGCAGTCGCAGCGCG+TGG | 0.581446 | 2_2:-36724703 | Msa0249640:CDS |
AATTGATTTCATGAGAGAGA+TGG | 0.582629 | 2_2:+36725090 | None:intergenic |
ACATGTCCGTGTTCATGCCA+TGG | 0.585181 | 2_2:-36722432 | Msa0249640:CDS |
TGATGGAGAAAACCCGGGAT+CGG | 0.585256 | 2_2:-36724881 | Msa0249640:CDS |
TCTAGGAAGAAGACAAGGCT+AGG | 0.588097 | 2_2:-36719949 | Msa0249640:intron |
GTTGCACCACTCCCTTCACC+AGG | 0.588826 | 2_2:+36722244 | None:intergenic |
TTTGTTGCATATGAGGCTAA+CGG | 0.590458 | 2_2:-36719430 | Msa0249640:three_prime_UTR |
TTATACTATTAAAGGATGTG+TGG | 0.590901 | 2_2:+36719343 | None:intergenic |
GGGTTACAAGAGTAAGATTG+TGG | 0.594567 | 2_2:-36721875 | Msa0249640:CDS |
GGAGAAAATTCTGCTGCCGT+AGG | 0.594774 | 2_2:+36724952 | None:intergenic |
ACATAAGAGAAGAAATTCTA+CGG | 0.596585 | 2_2:-36721852 | Msa0249640:CDS |
TAGATTGAGAACGGATCCAA+GGG | 0.602017 | 2_2:+36725353 | None:intergenic |
GCATGAACAGGTGTATCTCC+TGG | 0.604904 | 2_2:-36722262 | Msa0249640:intron |
CAGGTGTATCTCCTGGTGAA+GGG | 0.604940 | 2_2:-36722255 | Msa0249640:CDS |
TCAGCAGTCGCAGCGCGTGG+TGG | 0.605137 | 2_2:-36724700 | Msa0249640:CDS |
GAGGGATATTAGATTGAGAA+CGG | 0.606751 | 2_2:+36725344 | None:intergenic |
GATGATGACACGAAAATAGA+GGG | 0.608237 | 2_2:+36725326 | None:intergenic |
TCAACAACGCCGTAAACCTA+CGG | 0.609759 | 2_2:-36724968 | Msa0249640:CDS |
CAAAGACTACTACCATTCAC+CGG | 0.619446 | 2_2:-36725020 | Msa0249640:CDS |
GAAGGGAGGTTGTGTCACCT+GGG | 0.621667 | 2_2:+36721809 | None:intergenic |
TCTATGCAACAGTATATGGT+GGG | 0.624347 | 2_2:-36719601 | Msa0249640:three_prime_UTR |
CAGCTTCCATGGCATGAACA+CGG | 0.631221 | 2_2:+36722426 | None:intergenic |
GAAGTGGTGGAAGAGAGAAG+AGG | 0.632214 | 2_2:+36725261 | None:intergenic |
ATAGAAGCTGATCGTAAAGA+GGG | 0.632926 | 2_2:+36724790 | None:intergenic |
TGAGACTATCACCGCCGTCA+AGG | 0.636737 | 2_2:+36722164 | None:intergenic |
TTTACTTGGTTATATTACAG+AGG | 0.636923 | 2_2:-36719466 | Msa0249640:three_prime_UTR |
GATCTTTAATGGAACGTGTG+AGG | 0.637290 | 2_2:-36722108 | Msa0249640:CDS |
TTGGAGCCAGTGGAAGACGA+AGG | 0.640820 | 2_2:+36719845 | None:intergenic |
GCTCCAAAACCAAACGCAAG+AGG | 0.641070 | 2_2:-36719829 | Msa0249640:intron |
AGGGAGTGGTGCAACAATGT+CGG | 0.641905 | 2_2:-36722236 | Msa0249640:CDS |
AAAACATGAAACTCGTGTGG+TGG | 0.666835 | 2_2:-36719545 | Msa0249640:three_prime_UTR |
GTACTTCTAGGAAGAAGACA+AGG | 0.678532 | 2_2:-36719954 | Msa0249640:intron |
ACCAGATACATCACAAAACG+AGG | 0.688090 | 2_2:-36724922 | Msa0249640:CDS |
TTGCCACCAAGCTTTCAGAA+GGG | 0.691197 | 2_2:+36721792 | None:intergenic |
AATTCTACGGAAGAGAAGAG+CGG | 0.693061 | 2_2:-36721839 | Msa0249640:CDS |
AAGCAACACAGAATCATCAG+AGG | 0.697069 | 2_2:-36724847 | Msa0249640:CDS |
GAACATGATGGAGAAAACCC+GGG | 0.707928 | 2_2:-36724886 | Msa0249640:CDS |
TATGAAGGAAGCCTTGACGG+CGG | 0.737421 | 2_2:-36722175 | Msa0249640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATAAAAATAAAAAATA+AGG | + | chr2_2:36720401-36720420 | None:intergenic | 0.0% |
!! | ATAAAAAAATTAATAAAAAT+TGG | - | chr2_2:36723009-36723028 | Msa0249640:intron | 0.0% |
!!! | AAAATTTATTAATATTTTAT+TGG | - | chr2_2:36724384-36724403 | Msa0249640:intron | 0.0% |
!! | TAAATAATAAAATTAGGTTT+GGG | + | chr2_2:36720103-36720122 | None:intergenic | 10.0% |
!! | TTAAATAATAAAATTAGGTT+TGG | + | chr2_2:36720104-36720123 | None:intergenic | 10.0% |
!! | TGATGTTAAATAATAAAATT+AGG | + | chr2_2:36720109-36720128 | None:intergenic | 10.0% |
!! | TTTGTAAAAAAAAAGTTTAA+CGG | + | chr2_2:36721154-36721173 | None:intergenic | 10.0% |
!! | TTTATTGTTGAAATATAAAT+TGG | + | chr2_2:36722010-36722029 | None:intergenic | 10.0% |
!!! | TTCAAAATATACTAATTTTA+AGG | + | chr2_2:36723119-36723138 | None:intergenic | 10.0% |
!! | TCATTTAGTTATTAATATTA+TGG | - | chr2_2:36723160-36723179 | Msa0249640:intron | 10.0% |
!!! | AGTAGTAATTTTTTTTTTTA+AGG | - | chr2_2:36723203-36723222 | Msa0249640:intron | 10.0% |
!!! | TATGAATTATTTAAAACTTT+GGG | + | chr2_2:36723598-36723617 | None:intergenic | 10.0% |
!!! | TTATGAATTATTTAAAACTT+TGG | + | chr2_2:36723599-36723618 | None:intergenic | 10.0% |
!!! | TTTTTTTACCTTAAATATAA+GGG | - | chr2_2:36724228-36724247 | Msa0249640:intron | 10.0% |
!!! | CACTTTTTTTTTTATGTTTA+GGG | + | chr2_2:36719564-36719583 | None:intergenic | 15.0% |
!!! | TCACTTTTTTTTTTATGTTT+AGG | + | chr2_2:36719565-36719584 | None:intergenic | 15.0% |
!! | TATTAAGTGAGTTTATAATT+GGG | - | chr2_2:36721809-36721828 | Msa0249640:CDS | 15.0% |
!! | AAAAGCTTAATCTTAAAATT+TGG | + | chr2_2:36721886-36721905 | None:intergenic | 15.0% |
!! | AGAAAAAAATTAAACATTAG+AGG | + | chr2_2:36721983-36722002 | None:intergenic | 15.0% |
!! | TTTCAACAATAAATTGTTAA+TGG | - | chr2_2:36722017-36722036 | Msa0249640:intron | 15.0% |
!! | AAAATAAAACATCTCTAATA+TGG | - | chr2_2:36722040-36722059 | Msa0249640:intron | 15.0% |
!! | AGTATAAAATATATACACTA+TGG | + | chr2_2:36722698-36722717 | None:intergenic | 15.0% |
!! | ATTATTAATGAAATGCTATA+AGG | + | chr2_2:36723235-36723254 | None:intergenic | 15.0% |
!! | TAATCTAAATAGATCAATAA+TGG | + | chr2_2:36723449-36723468 | None:intergenic | 15.0% |
!! | TCAAAAATAGAAAGAAATAT+AGG | - | chr2_2:36723499-36723518 | Msa0249640:intron | 15.0% |
!! | AAATTAAATAATCTCATTCA+AGG | - | chr2_2:36724083-36724102 | Msa0249640:intron | 15.0% |
!!! | GTTTTTTTACCTTAAATATA+AGG | - | chr2_2:36724227-36724246 | Msa0249640:intron | 15.0% |
!!! | TTTTTTACCTTAAATATAAG+GGG | - | chr2_2:36724229-36724248 | Msa0249640:intron | 15.0% |
!!! | TAAAATCACTCATAATTTTT+TGG | + | chr2_2:36724301-36724320 | None:intergenic | 15.0% |
!! | CATGTTATTAATGTTAATAA+AGG | + | chr2_2:36724333-36724352 | None:intergenic | 15.0% |
!! | AATTAAAGCAAATAAATAAC+TGG | - | chr2_2:36724800-36724819 | Msa0249640:CDS | 15.0% |
!! | AAAGTGAATAATTAAGCAAA+TGG | - | chr2_2:36719578-36719597 | Msa0249640:three_prime_UTR | 20.0% |
!! | ATGAATAGAATAAATTTGCA+TGG | + | chr2_2:36720149-36720168 | None:intergenic | 20.0% |
!!! | TTCAAAATTTTGTCTAGATT+TGG | - | chr2_2:36720363-36720382 | Msa0249640:intron | 20.0% |
!!! | TCAAAATTTTGTCTAGATTT+GGG | - | chr2_2:36720364-36720383 | Msa0249640:intron | 20.0% |
!!! | TGATTTTTTTTCCTCTAATA+AGG | - | chr2_2:36720586-36720605 | Msa0249640:intron | 20.0% |
!! | ATCTAGTCACTAAAAATATT+TGG | - | chr2_2:36720965-36720984 | Msa0249640:intron | 20.0% |
!!! | TTAATGATATTTTGCATTGA+TGG | - | chr2_2:36721099-36721118 | Msa0249640:intron | 20.0% |
!!! | AAAAGTCATTTATGACATTT+TGG | + | chr2_2:36721263-36721282 | None:intergenic | 20.0% |
!! | ATTGAAGTATGGAAAATATA+TGG | + | chr2_2:36721623-36721642 | None:intergenic | 20.0% |
!! | ATATGTAATAGATTGAAGTA+TGG | + | chr2_2:36721634-36721653 | None:intergenic | 20.0% |
!! | GTATTAAGTGAGTTTATAAT+TGG | - | chr2_2:36721808-36721827 | Msa0249640:CDS | 20.0% |
!!! | TCTTACTAATTAGTTTTGTA+TGG | - | chr2_2:36721843-36721862 | Msa0249640:CDS | 20.0% |
!!! | CTTACTAATTAGTTTTGTAT+GGG | - | chr2_2:36721844-36721863 | Msa0249640:CDS | 20.0% |
!! | ACGATTGTAATACAAATATA+AGG | + | chr2_2:36722097-36722116 | None:intergenic | 20.0% |
!!! | TCTTTGTGATTTTAGTATTT+AGG | - | chr2_2:36722163-36722182 | Msa0249640:CDS | 20.0% |
!! | ATATGAGACCAAAATATAAT+GGG | + | chr2_2:36722190-36722209 | None:intergenic | 20.0% |
!! | TATATGAGACCAAAATATAA+TGG | + | chr2_2:36722191-36722210 | None:intergenic | 20.0% |
!!! | GATATTTGAAACTTAATTAC+CGG | + | chr2_2:36722346-36722365 | None:intergenic | 20.0% |
!!! | AATAGATCAATAATGGATAA+GGG | + | chr2_2:36723442-36723461 | None:intergenic | 20.0% |
!!! | AAATAGATCAATAATGGATA+AGG | + | chr2_2:36723443-36723462 | None:intergenic | 20.0% |
!!! | ATATAGGAGTATTAATAAAC+TGG | - | chr2_2:36723515-36723534 | Msa0249640:intron | 20.0% |
!!! | TACCTTTATTTGAATTTTCT+AGG | + | chr2_2:36724064-36724083 | None:intergenic | 20.0% |
!! | TCGTTAAGTGATTTATAAAT+TGG | - | chr2_2:36724409-36724428 | Msa0249640:intron | 20.0% |
!! | ATAACTTATGTGATTTGAAA+AGG | - | chr2_2:36724457-36724476 | Msa0249640:intron | 20.0% |
!! | TTAATCAAAGAAAAAGGAAT+TGG | - | chr2_2:36724827-36724846 | Msa0249640:CDS | 20.0% |
!!! | TTTTTACTTTTCAATAGTAG+TGG | - | chr2_2:36724981-36725000 | Msa0249640:CDS | 20.0% |
!! | TAAATATCATTTCTTAGCAA+TGG | + | chr2_2:36725222-36725241 | None:intergenic | 20.0% |
! | TTGATTAAAGTAGTTGTAGT+GGG | + | chr2_2:36720181-36720200 | None:intergenic | 25.0% |
! | GTTATTGCACATAGTTAATT+AGG | + | chr2_2:36720273-36720292 | None:intergenic | 25.0% |
!! | TTTGATCTTTCCTGAATTTT+CGG | - | chr2_2:36720438-36720457 | Msa0249640:intron | 25.0% |
!! | ACTTTAAAAAACAGTAAACG+AGG | - | chr2_2:36720475-36720494 | Msa0249640:intron | 25.0% |
! | ATGTTCGAAGAAAAAGTAAA+GGG | + | chr2_2:36720687-36720706 | None:intergenic | 25.0% |
! | AATGTTCGAAGAAAAAGTAA+AGG | + | chr2_2:36720688-36720707 | None:intergenic | 25.0% |
!!! | CACTAAAAATATTTGGTGTT+CGG | - | chr2_2:36720972-36720991 | Msa0249640:intron | 25.0% |
!!! | TTGTGACATTAACTAGTTTT+TGG | - | chr2_2:36721005-36721024 | Msa0249640:intron | 25.0% |
! | ATTCATCTAGGAATATTCAA+CGG | + | chr2_2:36721036-36721055 | None:intergenic | 25.0% |
! | CAAACAACAATTTATGACAT+AGG | - | chr2_2:36721174-36721193 | Msa0249640:intron | 25.0% |
! | ACACTTGTGTGATATAAAAT+TGG | - | chr2_2:36721224-36721243 | Msa0249640:intron | 25.0% |
!! | TTCTCTTTCTCTCTTTTATA+AGG | - | chr2_2:36721282-36721301 | Msa0249640:intron | 25.0% |
!! | TCGGATGAAATTGAATTTTA+TGG | - | chr2_2:36721357-36721376 | Msa0249640:intron | 25.0% |
!! | ATTGAATTTTATGGTGTGTT+CGG | - | chr2_2:36721366-36721385 | Msa0249640:intron | 25.0% |
! | AATCACGTTAAAAATTACCT+CGG | + | chr2_2:36721421-36721440 | None:intergenic | 25.0% |
! | TGATTTAAAGAAGCTTCAAA+AGG | - | chr2_2:36721436-36721455 | Msa0249640:intron | 25.0% |
!!! | ATATATTTTGATGAGAGAGA+AGG | + | chr2_2:36721564-36721583 | None:intergenic | 25.0% |
!!! | TTTTGATAGTGTGAATCAAA+AGG | + | chr2_2:36721708-36721727 | None:intergenic | 25.0% |
! | ATACAAATATAAGGAAATGC+AGG | + | chr2_2:36722088-36722107 | None:intergenic | 25.0% |
! | AATACTAAAATCACAAAGAG+AGG | + | chr2_2:36722162-36722181 | None:intergenic | 25.0% |
!!! | ATTTAGGACCCATTATATTT+TGG | - | chr2_2:36722179-36722198 | Msa0249640:CDS | 25.0% |
! | TGAAAGTGAAAGATCTTTAA+TGG | - | chr2_2:36722585-36722604 | Msa0249640:intron | 25.0% |
!!! | TCAATGTTTTTTCAATATGC+AGG | - | chr2_2:36722808-36722827 | Msa0249640:intron | 25.0% |
!!! | CAATGTTTTTTCAATATGCA+GGG | - | chr2_2:36722809-36722828 | Msa0249640:intron | 25.0% |
! | ACATAAGAGAAGAAATTCTA+CGG | - | chr2_2:36722852-36722871 | Msa0249640:intron | 25.0% |
! | TTAAAACTTACAGTAGGATA+AGG | + | chr2_2:36722953-36722972 | None:intergenic | 25.0% |
! | TTGATCTTAAAACTTACAGT+AGG | + | chr2_2:36722959-36722978 | None:intergenic | 25.0% |
!!! | TGGAGTATTTTTAAAAAGAG+TGG | - | chr2_2:36723180-36723199 | Msa0249640:intron | 25.0% |
! | AATGAGAGTTTCAATACAAT+TGG | - | chr2_2:36723252-36723271 | Msa0249640:intron | 25.0% |
! | ATGAGAGTTTCAATACAATT+GGG | - | chr2_2:36723253-36723272 | Msa0249640:intron | 25.0% |
! | GGGTATATCATAATAAATAG+CGG | - | chr2_2:36723273-36723292 | Msa0249640:intron | 25.0% |
! | GGTATATCATAATAAATAGC+GGG | - | chr2_2:36723274-36723293 | Msa0249640:intron | 25.0% |
!!! | CTCTTTATTTTCTAACTCTA+GGG | + | chr2_2:36723371-36723390 | None:intergenic | 25.0% |
! | TAGAAAATAAAGAGGTAAAG+AGG | - | chr2_2:36723377-36723396 | Msa0249640:intron | 25.0% |
!!! | AAGACTTTTTTGTTGTTAGA+AGG | + | chr2_2:36723640-36723659 | None:intergenic | 25.0% |
! | TGATCACACTAAATATGATA+GGG | + | chr2_2:36723700-36723719 | None:intergenic | 25.0% |
! | ATGATCACACTAAATATGAT+AGG | + | chr2_2:36723701-36723720 | None:intergenic | 25.0% |
!!! | TTTCTTTAAAATACCCTCAT+GGG | + | chr2_2:36723778-36723797 | None:intergenic | 25.0% |
!!! | TTTTCTTTAAAATACCCTCA+TGG | + | chr2_2:36723779-36723798 | None:intergenic | 25.0% |
!!! | TTTTTTGATACGCATGAAAA+TGG | + | chr2_2:36723885-36723904 | None:intergenic | 25.0% |
!!! | ATTTTAACAAACTTCAAGGA+AGG | + | chr2_2:36723951-36723970 | None:intergenic | 25.0% |
!!! | TGACATTTTAACAAACTTCA+AGG | + | chr2_2:36723955-36723974 | None:intergenic | 25.0% |
! | CATTGAAAATTAAGTAGTGA+AGG | + | chr2_2:36724012-36724031 | None:intergenic | 25.0% |
! | GACCTAGAAAATTCAAATAA+AGG | - | chr2_2:36724059-36724078 | Msa0249640:intron | 25.0% |
! | GGTTCATTAATCAAAGAAAA+AGG | - | chr2_2:36724821-36724840 | Msa0249640:CDS | 25.0% |
! | GCTAAGAAATGATATTTACT+TGG | - | chr2_2:36725224-36725243 | Msa0249640:five_prime_UTR | 25.0% |
! | TTTACTTGGTTATATTACAG+AGG | - | chr2_2:36725238-36725257 | Msa0249640:five_prime_UTR | 25.0% |
!!! | GGAAAAGCACTTTCTTTTAT+GGG | + | chr2_2:36719420-36719439 | None:intergenic | 30.0% |
!!! | TGGAAAAGCACTTTCTTTTA+TGG | + | chr2_2:36719421-36719440 | None:intergenic | 30.0% |
!! | AATTTTGGTGGGAAAATTGT+AGG | + | chr2_2:36719498-36719517 | None:intergenic | 30.0% |
! | AATTGATTTCATGAGAGAGA+TGG | + | chr2_2:36719617-36719636 | None:intergenic | 30.0% |
TGATTAAAGTAGTTGTAGTG+GGG | + | chr2_2:36720180-36720199 | None:intergenic | 30.0% | |
GTTGATTAAAGTAGTTGTAG+TGG | + | chr2_2:36720182-36720201 | None:intergenic | 30.0% | |
!! | TAATTAGTTTGTCCTGACTT+AGG | - | chr2_2:36720640-36720659 | Msa0249640:intron | 30.0% |
AATTGATCCTTGCAACAAAT+GGG | + | chr2_2:36720740-36720759 | None:intergenic | 30.0% | |
CATCAGATTAAGATTCAAGT+CGG | + | chr2_2:36720777-36720796 | None:intergenic | 30.0% | |
ATATACCCGCAAATTATTGA+TGG | - | chr2_2:36720857-36720876 | Msa0249640:intron | 30.0% | |
! | AACTACCATCAATAATTTGC+GGG | + | chr2_2:36720865-36720884 | None:intergenic | 30.0% |
CAACTACCATCAATAATTTG+CGG | + | chr2_2:36720866-36720885 | None:intergenic | 30.0% | |
CTAGTTAATGTCACAATATG+TGG | + | chr2_2:36721001-36721020 | None:intergenic | 30.0% | |
!!! | TGACACAGTTTTATTCATCT+AGG | + | chr2_2:36721048-36721067 | None:intergenic | 30.0% |
AATTTATGACATAGGACTGT+GGG | - | chr2_2:36721182-36721201 | Msa0249640:intron | 30.0% | |
AAGGATTGTGACATTGTAAT+TGG | - | chr2_2:36721301-36721320 | Msa0249640:intron | 30.0% | |
AAATTCAATTTCATCCGAAG+TGG | + | chr2_2:36721355-36721374 | None:intergenic | 30.0% | |
ATCACGTTAAAAATTACCTC+GGG | + | chr2_2:36721420-36721439 | None:intergenic | 30.0% | |
CAACAACATGAAAGAATCAT+AGG | + | chr2_2:36721662-36721681 | None:intergenic | 30.0% | |
ATGTTGTTGATGTTGTAAGT+GGG | - | chr2_2:36721673-36721692 | Msa0249640:intron | 30.0% | |
! | TGGCTTTTTATCTTTGCAAA+TGG | + | chr2_2:36722410-36722429 | None:intergenic | 30.0% |
AGCAATGCAAACTTATATGA+AGG | - | chr2_2:36722514-36722533 | Msa0249640:intron | 30.0% | |
AAAGATCTTTCACTTTCAGT+AGG | + | chr2_2:36722583-36722602 | None:intergenic | 30.0% | |
ATACGAAATGACAATTGTCA+GGG | + | chr2_2:36722985-36723004 | None:intergenic | 30.0% | |
TATACGAAATGACAATTGTC+AGG | + | chr2_2:36722986-36723005 | None:intergenic | 30.0% | |
! | TTTTTCTCCTATGTCATCTA+TGG | - | chr2_2:36723032-36723051 | Msa0249640:intron | 30.0% |
ATTTACTCCATAGATGACAT+AGG | + | chr2_2:36723042-36723061 | None:intergenic | 30.0% | |
!! | TTTATTTTCTAACTCTAGGG+TGG | + | chr2_2:36723368-36723387 | None:intergenic | 30.0% |
!!! | CCTCTTTATTTTCTAACTCT+AGG | + | chr2_2:36723372-36723391 | None:intergenic | 30.0% |
CCTAGAGTTAGAAAATAAAG+AGG | - | chr2_2:36723369-36723388 | Msa0249640:intron | 30.0% | |
GTAAAGAGGTAAATAAAGAG+TGG | - | chr2_2:36723391-36723410 | Msa0249640:intron | 30.0% | |
!! | TCAATAATGGATAAGGGTAT+TGG | + | chr2_2:36723436-36723455 | None:intergenic | 30.0% |
ATGTCCCATTAGAAAATAGA+GGG | + | chr2_2:36723986-36724005 | None:intergenic | 30.0% | |
TATGTCCCATTAGAAAATAG+AGG | + | chr2_2:36723987-36724006 | None:intergenic | 30.0% | |
! | AATCTCATTCAAGGAGTTTT+TGG | - | chr2_2:36724092-36724111 | Msa0249640:intron | 30.0% |
GAAAAAAATGCAGAAAGCTA+GGG | - | chr2_2:36724114-36724133 | Msa0249640:intron | 30.0% | |
TCTCACTAACTGAACTTAAA+CGG | - | chr2_2:36724181-36724200 | Msa0249640:intron | 30.0% | |
CACAAATCCCCTTATATTTA+AGG | + | chr2_2:36724239-36724258 | None:intergenic | 30.0% | |
GTTGTTTAGTTAAACCTCAA+AGG | - | chr2_2:36724258-36724277 | Msa0249640:intron | 30.0% | |
TATTCGAGAGAAAATTACGA+GGG | + | chr2_2:36724518-36724537 | None:intergenic | 30.0% | |
TTATTCGAGAGAAAATTACG+AGG | + | chr2_2:36724519-36724538 | None:intergenic | 30.0% | |
AGATGAATTCTTAGTTAGCT+AGG | + | chr2_2:36724672-36724691 | None:intergenic | 30.0% | |
TGGAAGAGTCTAATAATTCA+AGG | + | chr2_2:36724701-36724720 | None:intergenic | 30.0% | |
TCTAATATGATCAGCAATCA+TGG | + | chr2_2:36724721-36724740 | None:intergenic | 30.0% | |
CAAGAAAAAAGAGTCCATTA+GGG | + | chr2_2:36724913-36724932 | None:intergenic | 30.0% | |
ACAAGAAAAAAGAGTCCATT+AGG | + | chr2_2:36724914-36724933 | None:intergenic | 30.0% | |
TCATTCTATGCAACAGTATA+TGG | - | chr2_2:36725099-36725118 | Msa0249640:CDS | 30.0% | |
TATCATTTCTTAGCAATGGT+TGG | + | chr2_2:36725218-36725237 | None:intergenic | 30.0% | |
!!! | GTTTTGTTTTGTTGCATATG+AGG | - | chr2_2:36725267-36725286 | Msa0249640:five_prime_UTR | 30.0% |
GAGGGATATTAGATTGAGAA+CGG | + | chr2_2:36719363-36719382 | None:intergenic | 35.0% | |
GATGATGACACGAAAATAGA+GGG | + | chr2_2:36719381-36719400 | None:intergenic | 35.0% | |
! | TATGGGAGAAGACTTTTTGA+AGG | + | chr2_2:36719403-36719422 | None:intergenic | 35.0% |
! | ACATTGAGGGTTGAGAATTT+TGG | + | chr2_2:36719513-36719532 | None:intergenic | 35.0% |
TTTCACATCTGCTACATTGA+GGG | + | chr2_2:36719526-36719545 | None:intergenic | 35.0% | |
AACTGTTGCTCTTCATTGAA+AGG | + | chr2_2:36719645-36719664 | None:intergenic | 35.0% | |
!! | TGATGATTCTGTGTTGCTTT+CGG | + | chr2_2:36719856-36719875 | None:intergenic | 35.0% |
CAATACAAAGCAGACATACT+TGG | - | chr2_2:36719888-36719907 | Msa0249640:CDS | 35.0% | |
ATAGAAGCTGATCGTAAAGA+GGG | + | chr2_2:36719917-36719936 | None:intergenic | 35.0% | |
! | AAGTACTCTTCACTTGCTAA+TGG | - | chr2_2:36720029-36720048 | Msa0249640:intron | 35.0% |
!! | TAATGGTGTTGTGGATGAAA+AGG | - | chr2_2:36720046-36720065 | Msa0249640:intron | 35.0% |
AAAGGAGCTTGATCAATTCA+TGG | - | chr2_2:36720064-36720083 | Msa0249640:intron | 35.0% | |
TCAACAAACTCCGAAAATTC+AGG | + | chr2_2:36720451-36720470 | None:intergenic | 35.0% | |
AAAAAACAGTAAACGAGGAG+AGG | - | chr2_2:36720480-36720499 | Msa0249640:intron | 35.0% | |
! | GACTCTCTTTTCCTTATTAG+AGG | + | chr2_2:36720600-36720619 | None:intergenic | 35.0% |
! | TTTATTCCCCATTTGTTGCA+AGG | - | chr2_2:36720730-36720749 | Msa0249640:intron | 35.0% |
ATTGATCCTTGCAACAAATG+GGG | + | chr2_2:36720739-36720758 | None:intergenic | 35.0% | |
CAATTGATCCTTGCAACAAA+TGG | + | chr2_2:36720741-36720760 | None:intergenic | 35.0% | |
CGACTTGAATCTTAATCTGA+TGG | - | chr2_2:36720775-36720794 | Msa0249640:intron | 35.0% | |
AAACCAGTAACGTATACGAA+GGG | + | chr2_2:36720832-36720851 | None:intergenic | 35.0% | |
! | CGCAAATTATTGATGGTAGT+TGG | - | chr2_2:36720864-36720883 | Msa0249640:intron | 35.0% |
CAATTTATGACATAGGACTG+TGG | - | chr2_2:36721181-36721200 | Msa0249640:intron | 35.0% | |
ATTTATGACATAGGACTGTG+GGG | - | chr2_2:36721183-36721202 | Msa0249640:intron | 35.0% | |
! | CGGTTGATTTATCAATTCAG+CGG | + | chr2_2:36721489-36721508 | None:intergenic | 35.0% |
TAATAGCATGTTTGTGCAAG+CGG | + | chr2_2:36721509-36721528 | None:intergenic | 35.0% | |
CATGTTGTTGATGTTGTAAG+TGG | - | chr2_2:36721672-36721691 | Msa0249640:intron | 35.0% | |
ATGCAGGAAACTTGAATGTA+GGG | + | chr2_2:36722072-36722091 | None:intergenic | 35.0% | |
AATGCAGGAAACTTGAATGT+AGG | + | chr2_2:36722073-36722092 | None:intergenic | 35.0% | |
TTATCTTTGCAAATGGTACG+TGG | + | chr2_2:36722403-36722422 | None:intergenic | 35.0% | |
TTATATGAAGGAAGCCTTGA+CGG | - | chr2_2:36722526-36722545 | Msa0249640:intron | 35.0% | |
!! | ATAATGGATAAGGGTATTGG+AGG | + | chr2_2:36723433-36723452 | None:intergenic | 35.0% |
TGTCCCATTAGAAAATAGAG+GGG | + | chr2_2:36723985-36724004 | None:intergenic | 35.0% | |
GGAAAAAAATGCAGAAAGCT+AGG | - | chr2_2:36724113-36724132 | Msa0249640:intron | 35.0% | |
CACAACCATCATAACTTAAG+AGG | - | chr2_2:36724137-36724156 | Msa0249640:intron | 35.0% | |
CTTTGCCTCTTAAGTTATGA+TGG | + | chr2_2:36724145-36724164 | None:intergenic | 35.0% | |
! | ACTTAAACGGTGTTAACTTC+AGG | - | chr2_2:36724194-36724213 | Msa0249640:intron | 35.0% |
! | CTTAAACGGTGTTAACTTCA+GGG | - | chr2_2:36724195-36724214 | Msa0249640:intron | 35.0% |
! | TTAAACGGTGTTAACTTCAG+GGG | - | chr2_2:36724196-36724215 | Msa0249640:intron | 35.0% |
GTTTAGTTAAACCTCAAAGG+AGG | - | chr2_2:36724261-36724280 | Msa0249640:intron | 35.0% | |
AATTACACTTACCTCCTTTG+AGG | + | chr2_2:36724275-36724294 | None:intergenic | 35.0% | |
! | TATGCTTGACTTGACACATT+GGG | + | chr2_2:36724551-36724570 | None:intergenic | 35.0% |
! | ATATGCTTGACTTGACACAT+TGG | + | chr2_2:36724552-36724571 | None:intergenic | 35.0% |
ATCCGTACTAGTAATGATCA+AGG | - | chr2_2:36724590-36724609 | Msa0249640:intron | 35.0% | |
CTCCTTGATCATTACTAGTA+CGG | + | chr2_2:36724595-36724614 | None:intergenic | 35.0% | |
CATTATTAATTCCCCAGTCA+TGG | + | chr2_2:36724622-36724641 | None:intergenic | 35.0% | |
AGTTAGCTAGGCACATTAAT+TGG | + | chr2_2:36724660-36724679 | None:intergenic | 35.0% | |
TTAATTGAAGTCCTGTTTCC+TGG | + | chr2_2:36724786-36724805 | None:intergenic | 35.0% | |
!!! | GGTGAGTTTTATTTCCCTAA+TGG | - | chr2_2:36724896-36724915 | Msa0249640:CDS | 35.0% |
AACCAGAGTTTCATGTGATT+TGG | - | chr2_2:36725020-36725039 | Msa0249640:CDS | 35.0% | |
TTGTTTCCTTGTTCGAAACA+GGG | + | chr2_2:36725048-36725067 | None:intergenic | 35.0% | |
TTTGTTTCCTTGTTCGAAAC+AGG | + | chr2_2:36725049-36725068 | None:intergenic | 35.0% | |
TTCGAACAAGGAAACAAAGA+TGG | - | chr2_2:36725051-36725070 | Msa0249640:CDS | 35.0% | |
TTCTATGCAACAGTATATGG+TGG | - | chr2_2:36725102-36725121 | Msa0249640:CDS | 35.0% | |
TCTATGCAACAGTATATGGT+GGG | - | chr2_2:36725103-36725122 | Msa0249640:CDS | 35.0% | |
! | TATATGGTGGGACATTTGAT+AGG | - | chr2_2:36725115-36725134 | Msa0249640:exon | 35.0% |
TGAAAAACATGAAACTCGTG+TGG | - | chr2_2:36725156-36725175 | Msa0249640:five_prime_UTR | 35.0% | |
TTTGTTGCATATGAGGCTAA+CGG | - | chr2_2:36725274-36725293 | Msa0249640:five_prime_UTR | 35.0% | |
GGATGATGACACGAAAATAG+AGG | + | chr2_2:36719382-36719401 | None:intergenic | 40.0% | |
TTAGAACTAGGTAGGAGAAG+TGG | + | chr2_2:36719462-36719481 | None:intergenic | 40.0% | |
!! | TGAGGGTTGAGAATTTTGGT+GGG | + | chr2_2:36719509-36719528 | None:intergenic | 40.0% |
! | TTGAGGGTTGAGAATTTTGG+TGG | + | chr2_2:36719510-36719529 | None:intergenic | 40.0% |
GTTTCACATCTGCTACATTG+AGG | + | chr2_2:36719527-36719546 | None:intergenic | 40.0% | |
CAAAGACTACTACCATTCAC+CGG | - | chr2_2:36719684-36719703 | Msa0249640:exon | 40.0% | |
GTGATGTATCTGGTTGTAAG+TGG | + | chr2_2:36719776-36719795 | None:intergenic | 40.0% | |
ACCAGATACATCACAAAACG+AGG | - | chr2_2:36719782-36719801 | Msa0249640:intron | 40.0% | |
! | TCCTCGTTTTGTGATGTATC+TGG | + | chr2_2:36719786-36719805 | None:intergenic | 40.0% |
! | CGTAAGAGGTATGAACATGA+TGG | - | chr2_2:36719806-36719825 | Msa0249640:intron | 40.0% |
! | TGAACATGATGGAGAAAACC+CGG | - | chr2_2:36719817-36719836 | Msa0249640:intron | 40.0% |
AAGCAACACAGAATCATCAG+AGG | - | chr2_2:36719857-36719876 | Msa0249640:CDS | 40.0% | |
GATAGAAGCTGATCGTAAAG+AGG | + | chr2_2:36719918-36719937 | None:intergenic | 40.0% | |
! | TTCACTTGCTAATGGTGTTG+TGG | - | chr2_2:36720037-36720056 | Msa0249640:intron | 40.0% |
AGTAAACGAGGAGAGGATAA+TGG | - | chr2_2:36720487-36720506 | Msa0249640:intron | 40.0% | |
AACCAGTAACGTATACGAAG+GGG | + | chr2_2:36720831-36720850 | None:intergenic | 40.0% | |
CAAACCAGTAACGTATACGA+AGG | + | chr2_2:36720833-36720852 | None:intergenic | 40.0% | |
! | GTGGCATAAATTGGTGACAT+CGG | + | chr2_2:36721336-36721355 | None:intergenic | 40.0% |
! | GTCACCAATTTATGCCACTT+CGG | - | chr2_2:36721338-36721357 | Msa0249640:intron | 40.0% |
TCATCCGAAGTGGCATAAAT+TGG | + | chr2_2:36721345-36721364 | None:intergenic | 40.0% | |
TTATGGTGTGTTCGGATTCA+CGG | - | chr2_2:36721374-36721393 | Msa0249640:intron | 40.0% | |
TTAAAAATTACCTCGGGACG+TGG | + | chr2_2:36721414-36721433 | None:intergenic | 40.0% | |
! | GTTCTTTAAAAGCACAGAGC+AGG | + | chr2_2:36722242-36722261 | None:intergenic | 40.0% |
GTTCATGCATGCATCATGTA+TGG | + | chr2_2:36722430-36722449 | None:intergenic | 40.0% | |
TACATGATGCATGCATGAAC+AGG | - | chr2_2:36722430-36722449 | Msa0249640:CDS | 40.0% | |
TCACTTTCAGTAGGAACAAG+AGG | + | chr2_2:36722574-36722593 | None:intergenic | 40.0% | |
GATCTTTAATGGAACGTGTG+AGG | - | chr2_2:36722596-36722615 | Msa0249640:intron | 40.0% | |
GGGTTACAAGAGTAAGATTG+TGG | - | chr2_2:36722829-36722848 | Msa0249640:intron | 40.0% | |
AATTCTACGGAAGAGAAGAG+CGG | - | chr2_2:36722865-36722884 | Msa0249640:intron | 40.0% | |
TTTGTTAGGCGACAAGCTAA+CGG | + | chr2_2:36723343-36723362 | None:intergenic | 40.0% | |
TAATGGAACAAGTTCCCATG+AGG | - | chr2_2:36723761-36723780 | Msa0249640:intron | 40.0% | |
AATGGAACAAGTTCCCATGA+GGG | - | chr2_2:36723762-36723781 | Msa0249640:intron | 40.0% | |
! | ACACCCCCTCTATTTTCTAA+TGG | - | chr2_2:36723978-36723997 | Msa0249640:intron | 40.0% |
! | CACCCCCTCTATTTTCTAAT+GGG | - | chr2_2:36723979-36723998 | Msa0249640:intron | 40.0% |
GTCCCATTAGAAAATAGAGG+GGG | + | chr2_2:36723984-36724003 | None:intergenic | 40.0% | |
AGACTCGTGAATGTACTTCT+AGG | - | chr2_2:36724738-36724757 | Msa0249640:CDS | 40.0% | |
! | GTACTTCTAGGAAGAAGACA+AGG | - | chr2_2:36724750-36724769 | Msa0249640:CDS | 40.0% |
TAAAACTCACCTCTTGCGTT+TGG | + | chr2_2:36724887-36724906 | None:intergenic | 40.0% | |
TGCCAAATCACATGAAACTC+TGG | + | chr2_2:36725025-36725044 | None:intergenic | 40.0% | |
AAAACATGAAACTCGTGTGG+TGG | - | chr2_2:36725159-36725178 | Msa0249640:five_prime_UTR | 40.0% | |
GAGAGGAGTTAGAACTAGGT+AGG | + | chr2_2:36719470-36719489 | None:intergenic | 45.0% | |
GAAAATTGTAGGTGTGGGAG+AGG | + | chr2_2:36719487-36719506 | None:intergenic | 45.0% | |
GGTGGGAAAATTGTAGGTGT+GGG | + | chr2_2:36719492-36719511 | None:intergenic | 45.0% | |
TGGTGGGAAAATTGTAGGTG+TGG | + | chr2_2:36719493-36719512 | None:intergenic | 45.0% | |
TCAACAACGCCGTAAACCTA+CGG | - | chr2_2:36719736-36719755 | Msa0249640:intron | 45.0% | |
ATTCTGCTGCCGTAGGTTTA+CGG | + | chr2_2:36719748-36719767 | None:intergenic | 45.0% | |
TCACAAAACGAGGACGTAAG+AGG | - | chr2_2:36719792-36719811 | Msa0249640:intron | 45.0% | |
! | GAACATGATGGAGAAAACCC+GGG | - | chr2_2:36719818-36719837 | Msa0249640:intron | 45.0% |
GTAACGTATACGAAGGGGAA+AGG | + | chr2_2:36720826-36720845 | None:intergenic | 45.0% | |
TTCCCCTTCGTATACGTTAC+TGG | - | chr2_2:36720826-36720845 | Msa0249640:intron | 45.0% | |
TCATGCCATGGAAGCTGTTA+TGG | - | chr2_2:36722284-36722303 | Msa0249640:intron | 45.0% | |
ACAAGCCATAACAGCTTCCA+TGG | + | chr2_2:36722292-36722311 | None:intergenic | 45.0% | |
! | TGGAAGCTGTTATGGCTTGT+TGG | - | chr2_2:36722292-36722311 | Msa0249640:intron | 45.0% |
!! | GGAAGCTGTTATGGCTTGTT+GGG | - | chr2_2:36722293-36722312 | Msa0249640:intron | 45.0% |
CAGTCTCTACAAAGCTTGAC+CGG | - | chr2_2:36722324-36722343 | Msa0249640:intron | 45.0% | |
GCAAATGGTACGTGGATGAT+TGG | + | chr2_2:36722395-36722414 | None:intergenic | 45.0% | |
AGTTTGCATTGCTCTCTGCT+TGG | + | chr2_2:36722507-36722526 | None:intergenic | 45.0% | |
TTTAATGGAACGTGTGAGGC+AGG | - | chr2_2:36722600-36722619 | Msa0249640:intron | 45.0% | |
GTTGAAGCACGAGCTAAAAC+AGG | - | chr2_2:36722624-36722643 | Msa0249640:intron | 45.0% | |
ATTCTACGGAAGAGAAGAGC+GGG | - | chr2_2:36722866-36722885 | Msa0249640:intron | 45.0% | |
TTGCCACCAAGCTTTCAGAA+GGG | + | chr2_2:36722915-36722934 | None:intergenic | 45.0% | |
ATTGCCACCAAGCTTTCAGA+AGG | + | chr2_2:36722916-36722935 | None:intergenic | 45.0% | |
GGTGGCAATCACACTCTAAA+TGG | - | chr2_2:36722927-36722946 | Msa0249640:intron | 45.0% | |
!! | ACTCTAGGGTGGAGTTTGTT+AGG | + | chr2_2:36723357-36723376 | None:intergenic | 45.0% |
TCTAGGAAGAAGACAAGGCT+AGG | - | chr2_2:36724755-36724774 | Msa0249640:CDS | 45.0% | |
ACTAATCCTTCGTCTTCCAC+TGG | - | chr2_2:36724853-36724872 | Msa0249640:CDS | 45.0% | |
!! | TCACCTCTTGCGTTTGGTTT+TGG | + | chr2_2:36724881-36724900 | None:intergenic | 45.0% |
! | CTTTTCAATAGTAGTGGCGC+AGG | - | chr2_2:36724987-36725006 | Msa0249640:CDS | 45.0% |
!!! | TTTTATTTTTAAAAAAATGT+TGG | - | chr2_2:36720530-36720549 | Msa0249640:intron | 5.0% |
!!! | AATAATACTTTTAATATTAA+TGG | - | chr2_2:36723744-36723763 | Msa0249640:intron | 5.0% |
GGTGGAAGAGAGAAGAGGTT+TGG | + | chr2_2:36719441-36719460 | None:intergenic | 50.0% | |
! | GAAGTGGTGGAAGAGAGAAG+AGG | + | chr2_2:36719446-36719465 | None:intergenic | 50.0% |
GAACTAGGTAGGAGAAGTGG+TGG | + | chr2_2:36719459-36719478 | None:intergenic | 50.0% | |
GTGGGAGAGGAGTTAGAACT+AGG | + | chr2_2:36719474-36719493 | None:intergenic | 50.0% | |
ACGGCGTTGTTGAGCCAATT+CGG | + | chr2_2:36719729-36719748 | None:intergenic | 50.0% | |
GGAGAAAATTCTGCTGCCGT+AGG | + | chr2_2:36719755-36719774 | None:intergenic | 50.0% | |
TGATGGAGAAAACCCGGGAT+CGG | - | chr2_2:36719823-36719842 | Msa0249640:intron | 50.0% | |
!! | ATTCTGTGTTGCTTTCGGCC+CGG | + | chr2_2:36719851-36719870 | None:intergenic | 50.0% |
CAACTGCAGCATCCTAAGTC+AGG | + | chr2_2:36720655-36720674 | None:intergenic | 50.0% | |
CTTAGGATGCTGCAGTTGTG+AGG | - | chr2_2:36720657-36720676 | Msa0249640:intron | 50.0% | |
!!! | GGGACGTGGAAAAGGTGTTT+TGG | + | chr2_2:36721400-36721419 | None:intergenic | 50.0% |
ATTACCTCGGGACGTGGAAA+AGG | + | chr2_2:36721408-36721427 | None:intergenic | 50.0% | |
AGGTAGCTTCTCCTCAAACG+TGG | - | chr2_2:36721456-36721475 | Msa0249640:intron | 50.0% | |
GGTAGCTTCTCCTCAAACGT+GGG | - | chr2_2:36721457-36721476 | Msa0249640:intron | 50.0% | |
ACATGTCCGTGTTCATGCCA+TGG | - | chr2_2:36722272-36722291 | Msa0249640:intron | 50.0% | |
CAGCTTCCATGGCATGAACA+CGG | + | chr2_2:36722281-36722300 | None:intergenic | 50.0% | |
!! | TGTTATGGCTTGTTGGGAGC+TGG | - | chr2_2:36722299-36722318 | Msa0249640:intron | 50.0% |
GCATGAACAGGTGTATCTCC+TGG | - | chr2_2:36722442-36722461 | Msa0249640:CDS | 50.0% | |
ACAGGTGTATCTCCTGGTGA+AGG | - | chr2_2:36722448-36722467 | Msa0249640:CDS | 50.0% | |
CAGGTGTATCTCCTGGTGAA+GGG | - | chr2_2:36722449-36722468 | Msa0249640:CDS | 50.0% | |
AGGGAGTGGTGCAACAATGT+CGG | - | chr2_2:36722468-36722487 | Msa0249640:CDS | 50.0% | |
TATGAAGGAAGCCTTGACGG+CGG | - | chr2_2:36722529-36722548 | Msa0249640:intron | 50.0% | |
! | CAACCTCCCTTCTGAAAGCT+TGG | - | chr2_2:36722906-36722925 | Msa0249640:intron | 50.0% |
ATCAAGGAGACAGCCATGAC+TGG | - | chr2_2:36724606-36724625 | Msa0249640:intron | 50.0% | |
TCAAGGAGACAGCCATGACT+GGG | - | chr2_2:36724607-36724626 | Msa0249640:intron | 50.0% | |
GGAAGAAGACAAGGCTAGGT+TGG | - | chr2_2:36724759-36724778 | Msa0249640:CDS | 50.0% | |
GCTCCAAAACCAAACGCAAG+AGG | - | chr2_2:36724875-36724894 | Msa0249640:CDS | 50.0% | |
TTGGCACCCTGTTTCGAACA+AGG | - | chr2_2:36725039-36725058 | Msa0249640:CDS | 50.0% | |
CTACTACCATTCACCGGAGC+CGG | - | chr2_2:36719690-36719709 | Msa0249640:CDS | 55.0% | |
AGAAAACCCGGGATCGGAAC+CGG | - | chr2_2:36719829-36719848 | Msa0249640:intron | 55.0% | |
! | AACACCTTTTCCACGTCCCG+AGG | - | chr2_2:36721401-36721420 | Msa0249640:intron | 55.0% |
GCGGCAAAAACCCACGTTTG+AGG | + | chr2_2:36721470-36721489 | None:intergenic | 55.0% | |
GTATCTCCTGGTGAAGGGAG+TGG | - | chr2_2:36722454-36722473 | Msa0249640:CDS | 55.0% | |
TGAGACTATCACCGCCGTCA+AGG | + | chr2_2:36722543-36722562 | None:intergenic | 55.0% | |
GGCGGTGATAGTCTCAGCTT+TGG | - | chr2_2:36722547-36722566 | Msa0249640:intron | 55.0% | |
GAAGGGAGGTTGTGTCACCT+GGG | + | chr2_2:36722898-36722917 | None:intergenic | 55.0% | |
AGAAGGGAGGTTGTGTCACC+TGG | + | chr2_2:36722899-36722918 | None:intergenic | 55.0% | |
CCACCAAGCTTTCAGAAGGG+AGG | + | chr2_2:36722912-36722931 | None:intergenic | 55.0% | |
! | CCTCCCTTCTGAAAGCTTGG+TGG | - | chr2_2:36722909-36722928 | Msa0249640:intron | 55.0% |
!! | AGCGGGACTAGCTAGTAACG+TGG | - | chr2_2:36723291-36723310 | Msa0249640:intron | 55.0% |
TGGCTTCTCTAGCAAGAGCG+TGG | - | chr2_2:36723311-36723330 | Msa0249640:intron | 55.0% | |
! | GGCTTCTCTAGCAAGAGCGT+GGG | - | chr2_2:36723312-36723331 | Msa0249640:intron | 55.0% |
CAAGGAGACAGCCATGACTG+GGG | - | chr2_2:36724608-36724627 | Msa0249640:intron | 55.0% | |
!! | AGACAAGGCTAGGTTGGTCC+AGG | - | chr2_2:36724765-36724784 | Msa0249640:CDS | 55.0% |
!! | GCTAGGTTGGTCCAGGAAAC+AGG | - | chr2_2:36724772-36724791 | Msa0249640:CDS | 55.0% |
TTGGAGCCAGTGGAAGACGA+AGG | + | chr2_2:36724862-36724881 | None:intergenic | 55.0% | |
!!! | GCGTTTGGTTTTGGAGCCAG+TGG | + | chr2_2:36724872-36724891 | None:intergenic | 55.0% |
!! | GAGCCAATTCGGCGCTGATC+CGG | + | chr2_2:36719718-36719737 | None:intergenic | 60.0% |
GAAAACCCGGGATCGGAACC+GGG | - | chr2_2:36719830-36719849 | Msa0249640:CDS | 60.0% | |
ATCCGCGGAAGCTGATCGAC+GGG | + | chr2_2:36719972-36719991 | None:intergenic | 60.0% | |
GATCCGCGGAAGCTGATCGA+CGG | + | chr2_2:36719973-36719992 | None:intergenic | 60.0% | |
! | TGAAGCTGTGCGTCGATCCG+CGG | + | chr2_2:36719987-36720006 | None:intergenic | 60.0% |
GTTGCACCACTCCCTTCACC+AGG | + | chr2_2:36722463-36722482 | None:intergenic | 60.0% | |
AGAAGAGCGGGAAAGCTCCC+AGG | - | chr2_2:36722878-36722897 | Msa0249640:intron | 60.0% | |
!! | ATTCGGCGCTGATCCGGCAC+CGG | + | chr2_2:36719712-36719731 | None:intergenic | 65.0% |
! | GTGCCGGATCAGCGCCGAAT+TGG | - | chr2_2:36719712-36719731 | Msa0249640:intron | 65.0% |
TTTCGGCCCGGTTCCGATCC+CGG | + | chr2_2:36719839-36719858 | None:intergenic | 65.0% | |
CCATTCACCGGAGCCGGTGC+CGG | - | chr2_2:36719696-36719715 | Msa0249640:CDS | 70.0% | |
TTCGGCCCGGTTCCGATCCC+GGG | + | chr2_2:36719838-36719857 | None:intergenic | 70.0% | |
CGCCCGTCGATCAGCTTCCG+CGG | - | chr2_2:36719967-36719986 | Msa0249640:intron | 70.0% | |
GCTTCAGCAGTCGCAGCGCG+TGG | - | chr2_2:36720001-36720020 | Msa0249640:intron | 70.0% | |
TCAGCAGTCGCAGCGCGTGG+TGG | - | chr2_2:36720004-36720023 | Msa0249640:intron | 70.0% | |
!! | CCGGCACCGGCTCCGGTGAA+TGG | + | chr2_2:36719699-36719718 | None:intergenic | 75.0% |
!! | CGCTGATCCGGCACCGGCTC+CGG | + | chr2_2:36719706-36719725 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 36719353 | 36725373 | 36719353 | ID=Msa0249640;Name=Msa0249640 |
chr2_2 | mRNA | 36719353 | 36725373 | 36719353 | ID=Msa0249640-mRNA-1;Parent=Msa0249640;Name=Msa0249640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=244|1|1|1|1|1|6|336|370 |
chr2_2 | exon | 36719353 | 36719728 | 36719353 | ID=Msa0249640-mRNA-1:exon:11722;Parent=Msa0249640-mRNA-1 |
chr2_2 | exon | 36719830 | 36719966 | 36719830 | ID=Msa0249640-mRNA-1:exon:11721;Parent=Msa0249640-mRNA-1 |
chr2_2 | exon | 36721765 | 36721896 | 36721765 | ID=Msa0249640-mRNA-1:exon:11720;Parent=Msa0249640-mRNA-1 |
chr2_2 | exon | 36722081 | 36722274 | 36722081 | ID=Msa0249640-mRNA-1:exon:11719;Parent=Msa0249640-mRNA-1 |
chr2_2 | exon | 36722381 | 36722501 | 36722381 | ID=Msa0249640-mRNA-1:exon:11718;Parent=Msa0249640-mRNA-1 |
chr2_2 | exon | 36724641 | 36725373 | 36724641 | ID=Msa0249640-mRNA-1:exon:11717;Parent=Msa0249640-mRNA-1 |
chr2_2 | five_prime_UTR | 36725130 | 36725373 | 36725130 | ID=Msa0249640-mRNA-1:five_prime_utr;Parent=Msa0249640-mRNA-1 |
chr2_2 | CDS | 36724641 | 36725129 | 36724641 | ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1 |
chr2_2 | CDS | 36722381 | 36722501 | 36722381 | ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1 |
chr2_2 | CDS | 36722081 | 36722274 | 36722081 | ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1 |
chr2_2 | CDS | 36721765 | 36721896 | 36721765 | ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1 |
chr2_2 | CDS | 36719830 | 36719966 | 36719830 | ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1 |
chr2_2 | CDS | 36719689 | 36719728 | 36719689 | ID=Msa0249640-mRNA-1:cds;Parent=Msa0249640-mRNA-1 |
chr2_2 | three_prime_UTR | 36719353 | 36719688 | 36719353 | ID=Msa0249640-mRNA-1:three_prime_utr;Parent=Msa0249640-mRNA-1 |
Gene Sequence |
Protein sequence |