AlfalfaGEDB | Msa0250130

M. sativa cultivar zhongmu-4 / Msa0250130

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250130	RHN74777.1	28.755	233	125	3	4	195	157	389	1.25e-13	87.4
Msa0250130	RHN74777.1	29.508	244	117	2	3	191	204	447	1.95e-12	83.6
Msa0250130	RHN74777.1	33.889	180	118	1	1	180	82	260	2.09e-12	83.2
Msa0250130	RHN74777.1	34.463	177	114	2	5	180	110	285	2.54e-15	92.8
Msa0250130	RHN74777.1	37.736	159	98	1	22	180	79	236	1.84e-12	83.6
Msa0250130	RHN74777.1	85.759	632	55	1	1	597	378	1009	0.0	1082

Showing 1 to 6 of 6 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250130	sp\|C0LGP4\|Y3475_ARATH	43.239	636	308	10	6	595	373	1001	1.43e-156	478
Msa0250130	sp\|C0LGP4\|Y3475_ARATH	41.520	171	97	2	23	191	71	240	2.44e-20	99.4
Msa0250130	sp\|C0LGP4\|Y3475_ARATH	29.289	239	115	3	1	185	193	431	1.56e-16	87.4
Msa0250130	sp\|C0LGP4\|Y3475_ARATH	33.333	174	114	2	8	180	104	276	2.72e-16	86.7
Msa0250130	sp\|C0LGP4\|Y3475_ARATH	33.333	180	96	3	1	156	121	300	8.27e-15	81.6

Showing 1 to 5 of 5 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250130	A0A396JI73	28.755	233	125	3	4	195	157	389	5.97e-14	87.4
Msa0250130	A0A396JI73	29.508	244	117	2	3	191	204	447	9.33e-13	83.6
Msa0250130	A0A396JI73	33.889	180	118	1	1	180	82	260	1.00e-12	83.2
Msa0250130	A0A396JI73	34.463	177	114	2	5	180	110	285	1.22e-15	92.8
Msa0250130	A0A396JI73	37.736	159	98	1	22	180	79	236	8.78e-13	83.6
Msa0250130	A0A396JI73	85.759	632	55	1	1	597	378	1009	0.0	1082

Showing 1 to 6 of 6 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0250130	Msa0293130	0.811487	6.829734e-51	-8.615850e-47
Msa0250130	Msa0293140	0.846288	2.386855e-59	-8.615850e-47
Msa0250130	Msa0293200	0.882015	1.483671e-70	-8.615850e-47
Msa0250130	Msa0331210	0.871213	8.111405e-67	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250130	MtrunA17_Chr2g0314001	85.759	632	55	1	1	597	378	1009	0.0	1082
Msa0250130	MtrunA17_Chr2g0314001	34.463	177	114	2	5	180	110	285	2.34e-19	92.8
Msa0250130	MtrunA17_Chr2g0314001	28.755	233	125	3	4	195	157	389	1.15e-17	87.4
Msa0250130	MtrunA17_Chr2g0314001	37.736	159	98	1	22	180	79	236	1.69e-16	83.6
Msa0250130	MtrunA17_Chr2g0314001	29.508	244	117	2	3	191	204	447	1.80e-16	83.6
Msa0250130	MtrunA17_Chr2g0314001	33.889	180	118	1	1	180	82	260	1.93e-16	83.2
Msa0250130	MtrunA17_Chr2g0314001	30.645	186	121	3	3	184	132	313	3.11e-14	76.3
Msa0250130	MtrunA17_Chr2g0314001	39.167	120	72	1	70	189	79	197	6.24e-11	65.9
Msa0250130	MtrunA17_Chr2g0314021	86.551	632	50	1	1	597	378	1009	0.0	1068
Msa0250130	MtrunA17_Chr2g0314021	33.333	177	116	2	5	180	110	285	5.31e-18	88.2

Showing 1 to 10 of 1,276 entries

Previous1 2 3 4 5…128Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250130	AT3G47570.1	43.239	636	308	10	6	595	373	1001	1.45e-157	478
Msa0250130	AT3G47570.1	41.520	171	97	2	23	191	71	240	2.48e-21	99.4
Msa0250130	AT3G47570.1	29.289	239	115	3	1	185	193	431	1.59e-17	87.4
Msa0250130	AT3G47570.1	33.333	174	114	2	8	180	104	276	2.77e-17	86.7
Msa0250130	AT3G47570.1	33.333	180	96	3	1	156	121	300	8.41e-16	81.6
Msa0250130	AT3G47090.1	40.063	639	332	10	1	595	369	1000	1.04e-146	449
Msa0250130	AT3G47090.1	34.234	222	134	4	9	219	81	301	1.04e-18	90.9
Msa0250130	AT3G47090.1	34.536	194	123	3	1	191	97	289	4.58e-17	85.9
Msa0250130	AT3G47090.1	33.529	170	105	2	23	185	264	432	3.18e-15	80.1
Msa0250130	AT3G47090.1	29.381	194	113	1	4	173	124	317	8.32e-11	65.9

Showing 1 to 10 of 925 entries

Previous1 2 3 4 5…93Next

Find 135 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATTGGACAACTAAT+TGG	0.212930	2_2:-38030377	Msa0250130:CDS
AAACATGGAGGAAGCTTCAA+TGG	0.452120	2_2:+38029644	None:intergenic
AAACTCTGAAGGAATGGGGC+CGG	0.579380	2_2:+38030028	None:intergenic
AAAGAGGAACCAAAGAACAA+AGG	0.665963	2_2:+38029873	None:intergenic
AATAATCAAAACTGCAAATG+AGG	0.505172	2_2:+38029544	None:intergenic
AATTGTTCCCTCAATGAAAT+TGG	0.199825	2_2:+38030331	None:intergenic
ACAAGCAACGGATCCTAGCA+TGG	0.614579	2_2:+38028230	None:intergenic
ACAGCTGAATGCAAAGCTTT+GGG	0.363201	2_2:-38029287	Msa0250130:CDS
ACCAAAGTTCTGTCAATGCT+AGG	0.596874	2_2:+38029925	None:intergenic
ACCGGAAACAAGAACCTTTG+TGG	0.476227	2_2:-38029677	Msa0250130:CDS

Showing 1 to 10 of 135 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGATTCCAATTTCATTG+AGG	-	chr2_2:38028180-38028199	Msa0250130:three_prime_UTR	30.0%
CTTGATTCCAATTTCATTGA+GGG	-	chr2_2:38028181-38028200	Msa0250130:three_prime_UTR	30.0%
AATTGTTCCCTCAATGAAAT+TGG	+	chr2_2:38028191-38028210	None:intergenic	30.0%
TTAAGCTTTCCAATTGAATC+TGG	+	chr2_2:38028214-38028233	None:intergenic	30.0%
ATTGGAAAGCTTAAGAATCT+AGG	-	chr2_2:38028220-38028239	Msa0250130:three_prime_UTR	30.0%
GTGCAATTTCTTATGGTAAA+TGG	+	chr2_2:38028358-38028377	None:intergenic	30.0%
CAATATGGTGCAATTTCTTA+TGG	+	chr2_2:38028365-38028384	None:intergenic	30.0%
CAGATATAATCTCTGCAATA+TGG	+	chr2_2:38028380-38028399	None:intergenic	30.0%
CATATTGCAGAGATTATATC+TGG	-	chr2_2:38028378-38028397	Msa0250130:CDS	30.0%
TTTCTTCATCCAATTTGGTA+GGG	-	chr2_2:38029104-38029123	Msa0250130:CDS	30.0%

Showing 1 to 10 of 357 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	38028109	38030432	38028109	ID=Msa0250130;Name=Msa0250130
chr2_2	mRNA	38028109	38030432	38028109	ID=Msa0250130-mRNA-1;Parent=Msa0250130;Name=Msa0250130-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|135\|597
chr2_2	exon	38028109	38028599	38028109	ID=Msa0250130-mRNA-1:exon:11979;Parent=Msa0250130-mRNA-1
chr2_2	exon	38028883	38029757	38028883	ID=Msa0250130-mRNA-1:exon:11978;Parent=Msa0250130-mRNA-1
chr2_2	exon	38029870	38030432	38029870	ID=Msa0250130-mRNA-1:exon:11977;Parent=Msa0250130-mRNA-1
chr2_2	CDS	38029870	38030432	38029870	ID=Msa0250130-mRNA-1:cds;Parent=Msa0250130-mRNA-1
chr2_2	CDS	38028883	38029757	38028883	ID=Msa0250130-mRNA-1:cds;Parent=Msa0250130-mRNA-1
chr2_2	CDS	38028244	38028599	38028244	ID=Msa0250130-mRNA-1:cds;Parent=Msa0250130-mRNA-1
chr2_2	three_prime_UTR	38028109	38028243	38028109	ID=Msa0250130-mRNA-1:three_prime_utr;Parent=Msa0250130-mRNA-1

Gene Sequence

>Msa0250130

ATGGAGCATAATCAAATATATGGAGTGATCCCGAAAACAATTGGACAACTAATTGGTTTAGTTGTCTTAGAACTTGATTCCAATTTCATTGAGGGAACAATTCCAGATTCAATTGGAAAGCTTAAGAATCTAGGAGGATTGGCCATGGCTGGTAACAAATTCATCGGTAACATTCCATTAACCATTGGCAATCTTACTTTGTTGTATGGAGTAGATCTATCTAACAATAAATTAGAAGGAAGCATTCCATTTACCATAAGAAATTGCACCATATTGCAGAGATTATATCTGGATAGTAACAAATTGAGTGGTGATATACTCAATCAAACATTAGGCTATCTAGATGCTTTAATATTTCTTGACTTGTCCAACAACTTCTTGACCGGCCCCATTCCTTCAGAGTTTGGTAACTTGAAGCAACTTTCTCAATTGAATCTAACCTTGAATAAGTTGTCTGGTGAAATTCCTAAGGATTTAGCTTCTTGCCTAGCATTGACAGAACTTTGGTTGGGAGGAAACTTCTTCCATGGAGCTATACCTTTGTTCTTTGGTTCCTCTTTAAGTCTCTATGGCGAGGTTCCAAAAGGAGGTGTATTTAGCAATTTCTCAGCAATTTTACTAACCGGAAACAAGAACCTTTGTGGAGGAATATCTCCATTGAAGCTTCCTCCATGTTTTAAGGTGCACTCCAAGAAACATAAAAACCCTTTCAAAAAGAAACTTATCATTGGCAGTGTAGTTGGTGGCGTTTTAACCTCATTTGCAGTTTTGATTATTCTCCGTTTTTTCACGAGAAAGTCCAAAAGGCTACCTACTTCACCGTCTTTGCAAAAAGGGAACTTCAGAGTTACTTATGGTGAGATACATGAAGCCACCAATGGGTTTTCTTCATCCAATTTGGTAGGGACAGGAAGCTTTGCCTCTGTTTACAAAGGTTCTCTCCTTTACTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTCAAGCACGCGGAGCTACAAAGAGTTTCACAGCTGAATGCAAAGCTTTGGGAAATATGAAGCACCGGAATCTTGTCAAGATTCTTACATGTTGTTCAAGTGTTGATTATAAGGGTGATGAGTTCAAGGCTATTGTTTTTGAGTTCATGCCTAAGGGGAGTCTAGAAAACCTTCTGCACAATAATGAAGAGTCTGGAATTCATAATCTCAGCCTCACACAAAGGGTTGACATTGCTCTTGATGTAGCTCATGCATTGGATTACCTTCACAATGATACGGAGCATGTTGTAGTTCACTGTGATGTTAAGCCAAACAATGTTCTTCTTGATGATGACATGGTAGCCCACTTGGGAGACTTTGGATTATCTAGGTTAATTCATGGAGCCACACCATATTCAAGTGAAGGTCAAGTTAATTCATCCACAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCGGGTGGCCAAGTATCCCCTCATGGCGATATCTACAGCTACGGGATTCTTCTATTAGAAATGCTCACTGGAAAGCGACCAACAAATAGCATGTTTTCTGGAAATCTTAGTCTACATGCATTCTGTAAGATGAAAGTTCCAGAAGGAATCTTTGAGATAGTAGATTCACATTTGCTTTTGCCATTTGCTGAAGATGAGACTGGGATTGTGGAAAACAAGATTAGGAATTGTTTAGAGATGTTTGCAATAATTGGAGTTGCATGTTCTGAAGAGTTTCTTGCTCATCGAATGCTGATAAAAGATGTTATAGCAAAGTTGAATGAAATCAAATCAATGTTTCCATGCTAG

Protein sequence

>Msa0250130

MEHNQIYGVIPKTIGQLIGLVVLELDSNFIEGTIPDSIGKLKNLGGLAMAGNKFIGNIPLTIGNLTLLYGVDLSNNKLEGSIPFTIRNCTILQRLYLDSNKLSGDILNQTLGYLDALIFLDLSNNFLTGPIPSEFGNLKQLSQLNLTLNKLSGEIPKDLASCLALTELWLGGNFFHGAIPLFFGSSLSLYGEVPKGGVFSNFSAILLTGNKNLCGGISPLKLPPCFKVHSKKHKNPFKKKLIIGSVVGGVLTSFAVLIILRFFTRKSKRLPTSPSLQKGNFRVTYGEIHEATNGFSSSNLVGTGSFASVYKGSLLYFERPIVVKVLNLQARGATKSFTAECKALGNMKHRNLVKILTCCSSVDYKGDEFKAIVFEFMPKGSLENLLHNNEESGIHNLSLTQRVDIALDVAHALDYLHNDTEHVVVHCDVKPNNVLLDDDMVAHLGDFGLSRLIHGATPYSSEGQVNSSTIKGTIGYVPPEYGAGGQVSPHGDIYSYGILLLEMLTGKRPTNSMFSGNLSLHAFCKMKVPEGIFEIVDSHLLLPFAEDETGIVENKIRNCLEMFAIIGVACSEEFLAHRMLIKDVIAKLNEIKSMFPC*