AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251690 MtrunA17_Chr2g0310081 96.488 541 19 0 1 541 39 579 0.0 1070
Msa0251690 MtrunA17_Chr2g0309191 61.302 553 189 8 3 541 12 553 0.0 671
Msa0251690 MtrunA17_Chr2g0309181 58.182 550 202 8 10 541 47 586 0.0 640
Msa0251690 MtrunA17_Chr4g0074491 56.962 553 200 10 15 541 7 547 0.0 613
Msa0251690 MtrunA17_Chr2g0309171 52.931 580 210 9 15 541 583 1152 0.0 599
Msa0251690 MtrunA17_Chr2g0309171 53.558 534 217 8 24 536 6 529 0.0 565
Msa0251690 MtrunA17_Chr2g0309131 53.285 548 184 9 1 540 2 485 0.0 561
Msa0251690 MtrunA17_Chr4g0039581 47.865 562 264 9 3 540 11 567 5.30e-180 518
Msa0251690 MtrunA17_Chr5g0395701 48.043 562 258 10 8 540 49 605 2.97e-174 505
Msa0251690 MtrunA17_Chr1g0190341 46.196 552 260 10 13 540 20 558 9.84e-171 494
Msa0251690 MtrunA17_Chr1g0190371 46.196 552 260 10 13 540 20 558 9.84e-171 494
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251690 AT2G44230.1 55.935 556 216 9 1 541 1 542 0.0 626
Msa0251690 AT2G44260.1 54.982 562 221 8 1 540 1 552 0.0 623
Msa0251690 AT2G44260.2 52.196 592 221 9 1 540 1 582 0.0 607
Msa0251690 AT3G01880.1 49.908 545 244 8 14 540 56 589 0.0 542
Msa0251690 AT3G01870.1 49.816 544 244 8 14 540 52 583 0.0 533
Msa0251690 AT5G43950.1 47.818 550 263 10 13 540 17 564 6.34e-173 501
Msa0251690 AT5G18490.1 46.140 544 255 12 20 541 25 552 1.66e-165 481
Msa0251690 AT1G04090.1 46.071 560 264 14 13 540 17 570 6.12e-162 473
Msa0251690 AT3G04350.1 44.207 561 276 13 6 541 18 566 3.79e-161 471
Msa0251690 AT3G04350.2 44.238 538 269 12 29 541 13 544 3.53e-155 454

Find 148 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAAATTACTTATAATTT+AGG 0.099121 2_2:-41903725 Msa0251690:CDS
AATTGTTTCTGGGGAGTATT+TGG 0.144902 2_2:-41903798 Msa0251690:CDS
AGTGATTTGGGTATTGATTT+TGG 0.158866 2_2:-41903833 Msa0251690:CDS
ATTGGGAGCATGTAACTTTA+AGG 0.195232 2_2:-41904060 Msa0251690:CDS
CCTAATGGTTATAGCCCTTT+AGG 0.202069 2_2:-41904787 Msa0251690:CDS
TGAGATTAATTCATGGATTT+GGG 0.203465 2_2:-41904686 Msa0251690:CDS
GTGAGATTAATTCATGGATT+TGG 0.207795 2_2:-41904687 Msa0251690:CDS
GCCTAATTTACCTCAAATTA+AGG 0.217513 2_2:-41904482 Msa0251690:CDS
CCAAACAACAAACCTCTATT+TGG 0.232926 2_2:-41904940 Msa0251690:CDS
ATATACCTTCACAATCATTT+TGG 0.238103 2_2:+41905503 None:intergenic
TCTCTATTAGCTTTATCTTT+TGG 0.243499 2_2:+41904262 None:intergenic
GTGGCTTATTCTTCATTAAA+TGG 0.252619 2_2:-41903932 Msa0251690:CDS
GCCTTAATTTGAGGTAAATT+AGG 0.267099 2_2:+41904481 None:intergenic
TGAAGAACCAATCCAGCTTT+TGG 0.276809 2_2:+41903896 None:intergenic
TGCTCCATTTGACTCATCTT+TGG 0.277282 2_2:+41904903 None:intergenic
AATGTGCCAGGCCCATTAAA+AGG 0.295091 2_2:+41904139 None:intergenic
AACATTTCACTTGGTAAGAT+TGG 0.300208 2_2:-41904097 Msa0251690:CDS
GTCACCTTGTCCACCTTCTA+AGG 0.306809 2_2:+41905032 None:intergenic
ATCTAAAGTAAGCTCAATAA+TGG 0.307113 2_2:-41905401 Msa0251690:exon
AGGTGATGAGTTGGAGAAGT+TGG 0.308524 2_2:-41903705 Msa0251690:CDS
GCGTGTCAAGTGGCATTATT+AGG 0.311758 2_2:-41903170 None:intergenic
TGAAACTAAGAAGAGTGATT+TGG 0.317355 2_2:-41903846 Msa0251690:CDS
ATTGTTTCTGGGGAGTATTT+GGG 0.326850 2_2:-41903797 Msa0251690:CDS
CTAATGGTTATAGCCCTTTA+GGG 0.328617 2_2:-41904786 Msa0251690:CDS
TCTAAAGTAAGCTCAATAAT+GGG 0.334118 2_2:-41905400 Msa0251690:exon
CCTCAAGGTTTCTTCACATT+AGG 0.335790 2_2:-41904976 Msa0251690:CDS
GAAGCAATGATGGTGCTTAT+TGG 0.344274 2_2:-41904294 Msa0251690:CDS
CAATTGATTACACACTTGTT+TGG 0.344510 2_2:-41904870 Msa0251690:CDS
CCAAATAGAGGTTTGTTGTT+TGG 0.344691 2_2:+41904940 None:intergenic
GGCCTAAGGAGAAGAGAAAT+TGG 0.349249 2_2:-41903622 Msa0251690:CDS
CAAGCTCCTAGTGTTCTTGT+TGG 0.352506 2_2:-41904595 Msa0251690:CDS
GAAACTAAGAAGAGTGATTT+GGG 0.354458 2_2:-41903845 Msa0251690:CDS
ACCAAATGGTATTTCACAAA+TGG 0.357573 2_2:-41904394 Msa0251690:CDS
TATCAACATTCAACAAAATC+TGG 0.360229 2_2:-41905059 Msa0251690:CDS
TGAGGAAGATTTGAGCCTAA+TGG 0.365782 2_2:+41904322 None:intergenic
TGGTGGAACATTTACTGATT+TGG 0.371624 2_2:-41904179 Msa0251690:CDS
GGTAATGGAATCATTGATCT+AGG 0.375117 2_2:-41905102 Msa0251690:CDS
AAGTTGGAGAAGGTGGTTCC+TGG 0.379444 2_2:-41903689 Msa0251690:CDS
CAAACAAGTGTGTAATCAAT+TGG 0.381962 2_2:+41904871 None:intergenic
AAAATCTGGACAACCTTAGA+AGG 0.384268 2_2:-41905045 Msa0251690:CDS
TTCTTCACCTATCAACTCAT+TGG 0.384297 2_2:+41903655 None:intergenic
AAGATAAAGATGGTTACATT+TGG 0.391775 2_2:-41904822 Msa0251690:CDS
TTTCATGTAAAACCAATGTT+TGG 0.395827 2_2:-41904199 Msa0251690:CDS
CTTCAAGGTACTAGTGAGAT+TGG 0.399867 2_2:-41903878 Msa0251690:CDS
ACAACAAACCTCTATTTGGT+TGG 0.404911 2_2:-41904936 Msa0251690:CDS
TGTGCTAGTGCCTTAATTTG+AGG 0.408224 2_2:+41904472 None:intergenic
ATCAATGTGAGATTAATTCA+TGG 0.409369 2_2:-41904693 Msa0251690:CDS
CTCTTCTCCTTAGGCCCAGT+GGG 0.410262 2_2:+41903629 None:intergenic
CAACAAACCTCTATTTGGTT+GGG 0.411127 2_2:-41904935 Msa0251690:CDS
CCAAATGGTATTTCACAAAT+GGG 0.412235 2_2:-41904393 Msa0251690:CDS
TTGAAACAAGAAATAGGAAG+AGG 0.416458 2_2:+41904535 None:intergenic
CACAACATAGTAATGGTCAA+TGG 0.421062 2_2:-41903997 Msa0251690:CDS
TGGTTACCAATAGCACCTAA+TGG 0.422006 2_2:-41904802 Msa0251690:CDS
GGTAAGATTGGTGAACATAT+TGG 0.424618 2_2:-41904085 Msa0251690:CDS
CTATAACCATTAGGTGCTAT+TGG 0.424957 2_2:+41904796 None:intergenic
GTTTGTATAGGTGGTGGATT+TGG 0.429168 2_2:-41905123 Msa0251690:intron
GCTTGAATACCTCTATTGAT+TGG 0.429359 2_2:+41904613 None:intergenic
GCAACTTTCTTTGAACCAAC+AGG 0.429396 2_2:-41905003 Msa0251690:CDS
TTGGGAGCATGTAACTTTAA+GGG 0.436876 2_2:-41904059 Msa0251690:CDS
TTAAGGGTAAGTAATTTCAA+TGG 0.437250 2_2:-41904043 Msa0251690:CDS
AAATTGCCCAATGAGTTGAT+AGG 0.438715 2_2:-41903662 Msa0251690:CDS
GAAATGACTAAAAGATTTAA+CGG 0.441056 2_2:+41903457 None:intergenic
CCTAAAGGGCTATAACCATT+AGG 0.444178 2_2:+41904787 None:intergenic
CCTAATGGATCAATTTCCAT+TGG 0.445375 2_2:+41904337 None:intergenic
TATTTATCCAAAAGCTGGAT+TGG 0.447098 2_2:-41903903 Msa0251690:CDS
CCCATTTGTGAAATACCATT+TGG 0.451941 2_2:+41904393 None:intergenic
CATGTAAAACCAATGTTTGG+TGG 0.453406 2_2:-41904196 Msa0251690:CDS
CATGCTATTTATCCAAAAGC+TGG 0.456591 2_2:-41903908 Msa0251690:CDS
TTGGTGAACATATTGGTGAT+TGG 0.457143 2_2:-41904078 Msa0251690:CDS
ATCAAATTGTTGAGCCAGGT+TGG 0.457896 2_2:-41903772 Msa0251690:CDS
AAAGCTGGATTGGTTCTTCA+AGG 0.458586 2_2:-41903893 Msa0251690:CDS
ATCCAATTTCTCTTCTCCTT+AGG 0.459375 2_2:+41903620 None:intergenic
GGGGCATTGCTTTATAAGAA+AGG 0.466177 2_2:-41904373 Msa0251690:CDS
TTCAACCAAGTTCAACCAAA+TGG 0.469839 2_2:-41904408 Msa0251690:CDS
TTATAATTTAGGTGATGAGT+TGG 0.471376 2_2:-41903714 Msa0251690:CDS
TCAAATTGTTGAGCCAGGTT+GGG 0.471665 2_2:-41903771 Msa0251690:CDS
GGGCCTGGCACATTAAAAGT+TGG 0.476627 2_2:-41904130 Msa0251690:CDS
CCTCAAGGTGGAAGCAATGA+TGG 0.478383 2_2:-41904304 Msa0251690:CDS
ACAACATAGTAATGGTCAAT+GGG 0.479231 2_2:-41903996 Msa0251690:CDS
TGAGTACCTTGTGGCAAAGT+TGG 0.484565 2_2:+41905304 None:intergenic
CCAATGGAAATTGATCCATT+AGG 0.485356 2_2:-41904337 Msa0251690:CDS
GGGAATCAAATTGTTGAGCC+AGG 0.489502 2_2:-41903776 Msa0251690:CDS
TCTTCACCTATCAACTCATT+GGG 0.491681 2_2:+41903656 None:intergenic
TGGTGAACATATTGGTGATT+GGG 0.492344 2_2:-41904077 Msa0251690:CDS
GTTGGAGAAGTTGGAGAAGG+TGG 0.493198 2_2:-41903696 Msa0251690:CDS
GGCCTGGCACATTAAAAGTT+GGG 0.493640 2_2:-41904129 Msa0251690:CDS
CTCATAGATAACATTTCACT+TGG 0.495794 2_2:-41904106 Msa0251690:CDS
AAGCTTAAATGTGGTGTCAA+TGG 0.498242 2_2:+41905339 None:intergenic
GAAGGTGGACAAGGTGACTT+AGG 0.499268 2_2:-41905027 Msa0251690:CDS
GGCAAAGTTGGTATGTTAGC+TGG 0.501820 2_2:+41905316 None:intergenic
GGGGCAAGTGTGTGACTAAT+TGG 0.508245 2_2:+41905445 None:intergenic
ATGTGCCAGGCCCATTAAAA+GGG 0.511536 2_2:+41904140 None:intergenic
AAATACCATTTGGTTGAACT+TGG 0.513234 2_2:+41904403 None:intergenic
TTGTGACAATATGCCCTAAA+GGG 0.516168 2_2:+41904773 None:intergenic
ATAGGTGGTGGATTTGGTAA+TGG 0.516311 2_2:-41905117 Msa0251690:intron
TGATGAAATTTGAAATAAGA+AGG 0.518349 2_2:-41903594 Msa0251690:exon
TTGTTTCTGGGGAGTATTTG+GGG 0.519147 2_2:-41903796 Msa0251690:CDS
AGAAGGGCCCACTGGGCCTA+AGG 0.528288 2_2:-41903636 Msa0251690:CDS
AGCTTAAATGTGGTGTCAAT+GGG 0.528640 2_2:+41905340 None:intergenic
ATAGGTGAAGAAGGGCCCAC+TGG 0.531158 2_2:-41903644 Msa0251690:CDS
GTTGCCAAAGATGAGTCAAA+TGG 0.531167 2_2:-41904907 Msa0251690:CDS
ACTAGAACCCAACCAAATAG+AGG 0.532608 2_2:+41904928 None:intergenic
TTTAATGAAGAATAAGCCAC+TGG 0.534311 2_2:+41903935 None:intergenic
TAATGCCACTTGACACGCCA+TGG 0.535970 2_2:+41903175 None:intergenic
TAAAATGCTCTCATCGTGGT+TGG 0.543985 2_2:-41903209 Msa0251690:three_prime_UTR
AATGAGTTGATAGGTGAAGA+AGG 0.545267 2_2:-41903653 Msa0251690:CDS
TCATTGGGCAATTTAAAGCC+AGG 0.545632 2_2:+41903671 None:intergenic
AAACCTTGAGGTATTCCTGT+TGG 0.546596 2_2:+41904988 None:intergenic
AAAATCAAACAAGATAAAGA+TGG 0.551254 2_2:-41904832 Msa0251690:CDS
CAATGATGGTGCTTATTGGT+TGG 0.558172 2_2:-41904290 Msa0251690:CDS
TCAGAAGTTGAGTTTCAAAG+TGG 0.559064 2_2:-41903965 Msa0251690:CDS
GTAAATGTTCCACCAAACAT+TGG 0.562694 2_2:+41904187 None:intergenic
TGAAACAAGAAATAGGAAGA+GGG 0.564288 2_2:+41904536 None:intergenic
AAGGAGAAGAGAAATTGGAT+TGG 0.569043 2_2:-41903617 Msa0251690:CDS
AGGAGAAGAATCAAATCCAA+TGG 0.569336 2_2:-41904353 Msa0251690:CDS
TCTCTTCTCCTTAGGCCCAG+TGG 0.570564 2_2:+41903628 None:intergenic
TAAAACCATGGCGTGTCAAG+TGG 0.571802 2_2:-41903180 Msa0251690:three_prime_UTR
GTTGTGACAATATGCCCTAA+AGG 0.575356 2_2:+41904772 None:intergenic
CATTTACTGATTTGGCCATG+TGG 0.588074 2_2:-41904171 Msa0251690:CDS
TAGGTGAAGAAGGGCCCACT+GGG 0.591222 2_2:-41903643 Msa0251690:CDS
TATGTTAGACCAATCAATAG+AGG 0.593203 2_2:-41904622 Msa0251690:CDS
GAACCAACAGGAATACCTCA+AGG 0.594921 2_2:-41904991 Msa0251690:CDS
GGTTGGCAAATTTAAAACCA+TGG 0.594957 2_2:-41903192 Msa0251690:three_prime_UTR
AATGTGGTGTCAATGGGAAG+AGG 0.596119 2_2:+41905346 None:intergenic
AAAGTTCCAACAAGAACACT+AGG 0.596544 2_2:+41904589 None:intergenic
ACACGCCAAAATGATTGTGA+AGG 0.597576 2_2:-41905508 Msa0251690:five_prime_UTR
CCATCATTGCTTCCACCTTG+AGG 0.597806 2_2:+41904304 None:intergenic
AGAGATTGAATGCTGTGTGT+GGG 0.600508 2_2:+41905425 None:intergenic
TTAGGATGCAAGTACATGAA+AGG 0.602433 2_2:+41904439 None:intergenic
ATGAGTTGATAGGTGAAGAA+GGG 0.608495 2_2:-41903652 Msa0251690:CDS
CATTGGATTCTATCAAGTGA+AGG 0.610351 2_2:+41904736 None:intergenic
TTAGGCTCAAATCTTCCTCA+AGG 0.614815 2_2:-41904319 Msa0251690:CDS
GAGATTAATTCATGGATTTG+GGG 0.616547 2_2:-41904685 Msa0251690:CDS
ATCTGGACAACCTTAGAAGG+TGG 0.616813 2_2:-41905042 Msa0251690:CDS
TGAGTTGGAGAAGTTGGAGA+AGG 0.616966 2_2:-41903699 Msa0251690:CDS
GGCTCAAATCTTCCTCAAGG+TGG 0.618174 2_2:-41904316 Msa0251690:CDS
CTAAAGTAAGCTCAATAATG+GGG 0.624341 2_2:-41905399 Msa0251690:exon
AACATACCAACTTTGCCACA+AGG 0.638221 2_2:-41905310 Msa0251690:intron
TGAGATCTGATCTCACACAT+TGG 0.647996 2_2:+41904719 None:intergenic
AAGAGATTGAATGCTGTGTG+TGG 0.651832 2_2:+41905424 None:intergenic
CAAATGGTATTTCACAAATG+GGG 0.665695 2_2:-41904392 Msa0251690:CDS
ACAACCTTAGAAGGTGGACA+AGG 0.671477 2_2:-41905036 Msa0251690:CDS
TTTGTAAAATGCTCTCATCG+TGG 0.673042 2_2:-41903213 Msa0251690:three_prime_UTR
GAGATTGAATGCTGTGTGTG+GGG 0.676837 2_2:+41905426 None:intergenic
TCAAAGTGGAAATAAACCAG+TGG 0.680780 2_2:-41903951 Msa0251690:CDS
CCTAATGTGAAGAAACCTTG+AGG 0.683221 2_2:+41904976 None:intergenic
AATGGAATCATTGATCTAGG+TGG 0.694511 2_2:-41905099 Msa0251690:CDS
GTTAGCTGGAAGCTTAAATG+TGG 0.712615 2_2:+41905330 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAAAAATTGATGAAAA+AGG - chr2_2:41904030-41904049 Msa0251690:CDS 15.0%
!!! TTAATTTTGAAATTGTTTCT+GGG - chr2_2:41904880-41904899 Msa0251690:CDS 15.0%
!!! CCTAAATTATAAGTAATTTT+AGG + chr2_2:41904966-41904985 None:intergenic 15.0%
!! CCTAAAATTACTTATAATTT+AGG - chr2_2:41904963-41904982 Msa0251690:CDS 15.0%
!! AATGACTAAAAAAATCATAA+CGG - chr2_2:41905158-41905177 Msa0251690:intron 15.0%
!!! AACAATTTTCTTGAAATAAT+TGG - chr2_2:41905287-41905306 Msa0251690:intron 15.0%
!! GATAAAAAAATTGATGAAAA+AGG - chr2_2:41904030-41904049 Msa0251690:CDS 15.0%
!!! TTAATTTTGAAATTGTTTCT+GGG - chr2_2:41904880-41904899 Msa0251690:CDS 15.0%
!!! CCTAAATTATAAGTAATTTT+AGG + chr2_2:41904966-41904985 None:intergenic 15.0%
!! CCTAAAATTACTTATAATTT+AGG - chr2_2:41904963-41904982 Msa0251690:CDS 15.0%
!! AATGACTAAAAAAATCATAA+CGG - chr2_2:41905158-41905177 Msa0251690:intron 15.0%
!!! AACAATTTTCTTGAAATAAT+TGG - chr2_2:41905287-41905306 Msa0251690:intron 15.0%
!! AAAATCAAACAAGATAAAGA+TGG - chr2_2:41903856-41903875 Msa0251690:CDS 20.0%
!!! AGATTTTTGAAACAAGAAAT+AGG + chr2_2:41904162-41904181 None:intergenic 20.0%
!!! TATTTTTCACAACATAGTAA+TGG - chr2_2:41904684-41904703 Msa0251690:CDS 20.0%
!!! GTTAATTTTGAAATTGTTTC+TGG - chr2_2:41904879-41904898 Msa0251690:CDS 20.0%
!!! TAATTTTGAAATTGTTTCTG+GGG - chr2_2:41904881-41904900 Msa0251690:CDS 20.0%
!!! TGATGAAATTTGAAATAAGA+AGG - chr2_2:41905094-41905113 Msa0251690:CDS 20.0%
!! GAAATGACTAAAAGATTTAA+CGG + chr2_2:41905234-41905253 None:intergenic 20.0%
!! AAAATCAAACAAGATAAAGA+TGG - chr2_2:41903856-41903875 Msa0251690:CDS 20.0%
!!! AGATTTTTGAAACAAGAAAT+AGG + chr2_2:41904162-41904181 None:intergenic 20.0%
!!! TATTTTTCACAACATAGTAA+TGG - chr2_2:41904684-41904703 Msa0251690:CDS 20.0%
!!! GTTAATTTTGAAATTGTTTC+TGG - chr2_2:41904879-41904898 Msa0251690:CDS 20.0%
!!! TAATTTTGAAATTGTTTCTG+GGG - chr2_2:41904881-41904900 Msa0251690:CDS 20.0%
!!! TGATGAAATTTGAAATAAGA+AGG - chr2_2:41905094-41905113 Msa0251690:CDS 20.0%
!! GAAATGACTAAAAGATTTAA+CGG + chr2_2:41905234-41905253 None:intergenic 20.0%
!! ATATACCTTCACAATCATTT+TGG + chr2_2:41903188-41903207 None:intergenic 25.0%
!! ATCTAAAGTAAGCTCAATAA+TGG - chr2_2:41903287-41903306 Msa0251690:three_prime_UTR 25.0%
!! TCTAAAGTAAGCTCAATAAT+GGG - chr2_2:41903288-41903307 Msa0251690:three_prime_UTR 25.0%
!! TTGATATTTGTGACACTTTT+AGG + chr2_2:41903615-41903634 None:intergenic 25.0%
! TATCAACATTCAACAAAATC+TGG - chr2_2:41903629-41903648 Msa0251690:CDS 25.0%
! AAGATAAAGATGGTTACATT+TGG - chr2_2:41903866-41903885 Msa0251690:CDS 25.0%
! ATCAATGTGAGATTAATTCA+TGG - chr2_2:41903995-41904014 Msa0251690:CDS 25.0%
! TGAGATTAATTCATGGATTT+GGG - chr2_2:41904002-41904021 Msa0251690:CDS 25.0%
!!! TCTCTATTAGCTTTATCTTT+TGG + chr2_2:41904429-41904448 None:intergenic 25.0%
! AATAGAGAAAGAGTCAAAAA+AGG - chr2_2:41904441-41904460 Msa0251690:CDS 25.0%
! TTTCATGTAAAACCAATGTT+TGG - chr2_2:41904489-41904508 Msa0251690:CDS 25.0%
!!! TGGATTTTTTACCCTTTTAA+TGG - chr2_2:41904537-41904556 Msa0251690:CDS 25.0%
!!! GGATTTTTTACCCTTTTAAT+GGG - chr2_2:41904538-41904557 Msa0251690:CDS 25.0%
! TTAAGGGTAAGTAATTTCAA+TGG - chr2_2:41904645-41904664 Msa0251690:CDS 25.0%
!!! GGTGAATTTTTTTAGACAAT+GGG - chr2_2:41904938-41904957 Msa0251690:CDS 25.0%
!!! GTGAATTTTTTTAGACAATG+GGG - chr2_2:41904939-41904958 Msa0251690:CDS 25.0%
! TTATAATTTAGGTGATGAGT+TGG - chr2_2:41904974-41904993 Msa0251690:CDS 25.0%
!! TTTTTAAACCACTTCTTATG+TGG + chr2_2:41905130-41905149 None:intergenic 25.0%
!!! TTTTTAAGTAACTTCTTAGG+TGG - chr2_2:41905260-41905279 Msa0251690:intron 25.0%
!!! TTTTAAGTAACTTCTTAGGT+GGG - chr2_2:41905261-41905280 Msa0251690:intron 25.0%
!! ATATACCTTCACAATCATTT+TGG + chr2_2:41903188-41903207 None:intergenic 25.0%
!! ATCTAAAGTAAGCTCAATAA+TGG - chr2_2:41903287-41903306 Msa0251690:three_prime_UTR 25.0%
!! TCTAAAGTAAGCTCAATAAT+GGG - chr2_2:41903288-41903307 Msa0251690:three_prime_UTR 25.0%
!! TTGATATTTGTGACACTTTT+AGG + chr2_2:41903615-41903634 None:intergenic 25.0%
! TATCAACATTCAACAAAATC+TGG - chr2_2:41903629-41903648 Msa0251690:CDS 25.0%
! AAGATAAAGATGGTTACATT+TGG - chr2_2:41903866-41903885 Msa0251690:CDS 25.0%
! ATCAATGTGAGATTAATTCA+TGG - chr2_2:41903995-41904014 Msa0251690:CDS 25.0%
! TGAGATTAATTCATGGATTT+GGG - chr2_2:41904002-41904021 Msa0251690:CDS 25.0%
!!! TCTCTATTAGCTTTATCTTT+TGG + chr2_2:41904429-41904448 None:intergenic 25.0%
! AATAGAGAAAGAGTCAAAAA+AGG - chr2_2:41904441-41904460 Msa0251690:CDS 25.0%
! TTTCATGTAAAACCAATGTT+TGG - chr2_2:41904489-41904508 Msa0251690:CDS 25.0%
!!! TGGATTTTTTACCCTTTTAA+TGG - chr2_2:41904537-41904556 Msa0251690:CDS 25.0%
!!! GGATTTTTTACCCTTTTAAT+GGG - chr2_2:41904538-41904557 Msa0251690:CDS 25.0%
! TTAAGGGTAAGTAATTTCAA+TGG - chr2_2:41904645-41904664 Msa0251690:CDS 25.0%
!!! GGTGAATTTTTTTAGACAAT+GGG - chr2_2:41904938-41904957 Msa0251690:CDS 25.0%
!!! GTGAATTTTTTTAGACAATG+GGG - chr2_2:41904939-41904958 Msa0251690:CDS 25.0%
! TTATAATTTAGGTGATGAGT+TGG - chr2_2:41904974-41904993 Msa0251690:CDS 25.0%
!! TTTTTAAACCACTTCTTATG+TGG + chr2_2:41905130-41905149 None:intergenic 25.0%
!!! TTTTTAAGTAACTTCTTAGG+TGG - chr2_2:41905260-41905279 Msa0251690:intron 25.0%
!!! TTTTAAGTAACTTCTTAGGT+GGG - chr2_2:41905261-41905280 Msa0251690:intron 25.0%
CTAAAGTAAGCTCAATAATG+GGG - chr2_2:41903289-41903308 Msa0251690:three_prime_UTR 30.0%
GATAATTTCTTGTCGGAATT+TGG + chr2_2:41903442-41903461 None:intergenic 30.0%
TTCTGTCGATAATTTCTTGT+CGG + chr2_2:41903449-41903468 None:intergenic 30.0%
CTTTGCATATGTGTTTGTAT+AGG - chr2_2:41903553-41903572 Msa0251690:three_prime_UTR 30.0%
CAAACAAGTGTGTAATCAAT+TGG + chr2_2:41903820-41903839 None:intergenic 30.0%
CAATTGATTACACACTTGTT+TGG - chr2_2:41903818-41903837 Msa0251690:CDS 30.0%
GTGAGATTAATTCATGGATT+TGG - chr2_2:41904001-41904020 Msa0251690:CDS 30.0%
GAGATTAATTCATGGATTTG+GGG - chr2_2:41904003-41904022 Msa0251690:CDS 30.0%
TATGTTAGACCAATCAATAG+AGG - chr2_2:41904066-41904085 Msa0251690:CDS 30.0%
TGAAACAAGAAATAGGAAGA+GGG + chr2_2:41904155-41904174 None:intergenic 30.0%
TTGAAACAAGAAATAGGAAG+AGG + chr2_2:41904156-41904175 None:intergenic 30.0%
GCCTAATTTACCTCAAATTA+AGG - chr2_2:41904206-41904225 Msa0251690:CDS 30.0%
! GCCTTAATTTGAGGTAAATT+AGG + chr2_2:41904210-41904229 None:intergenic 30.0%
! CTTGGTTGAAACTTTTCATT+AGG + chr2_2:41904270-41904289 None:intergenic 30.0%
AAATACCATTTGGTTGAACT+TGG + chr2_2:41904288-41904307 None:intergenic 30.0%
ACCAAATGGTATTTCACAAA+TGG - chr2_2:41904294-41904313 Msa0251690:CDS 30.0%
CCAAATGGTATTTCACAAAT+GGG - chr2_2:41904295-41904314 Msa0251690:CDS 30.0%
CAAATGGTATTTCACAAATG+GGG - chr2_2:41904296-41904315 Msa0251690:CDS 30.0%
GGTGATTTCAAAAATTGTCA+AGG - chr2_2:41904462-41904481 Msa0251690:CDS 30.0%
AAAAGGGTAAAAAATCCACA+TGG + chr2_2:41904535-41904554 None:intergenic 30.0%
CTCATAGATAACATTTCACT+TGG - chr2_2:41904582-41904601 Msa0251690:CDS 30.0%
AACATTTCACTTGGTAAGAT+TGG - chr2_2:41904591-41904610 Msa0251690:CDS 30.0%
ACAACATAGTAATGGTCAAT+GGG - chr2_2:41904692-41904711 Msa0251690:CDS 30.0%
TTTAATGAAGAATAAGCCAC+TGG + chr2_2:41904756-41904775 None:intergenic 30.0%
GTGGCTTATTCTTCATTAAA+TGG - chr2_2:41904756-41904775 Msa0251690:CDS 30.0%
TATTTATCCAAAAGCTGGAT+TGG - chr2_2:41904785-41904804 Msa0251690:CDS 30.0%
TGAAACTAAGAAGAGTGATT+TGG - chr2_2:41904842-41904861 Msa0251690:CDS 30.0%
GAAACTAAGAAGAGTGATTT+GGG - chr2_2:41904843-41904862 Msa0251690:CDS 30.0%
!!! AGTGATTTGGGTATTGATTT+TGG - chr2_2:41904855-41904874 Msa0251690:CDS 30.0%
!!! GGGTGAATTTTTTTAGACAA+TGG - chr2_2:41904937-41904956 Msa0251690:CDS 30.0%
!!! GCGTTTTTAAGTAACTTCTT+AGG - chr2_2:41905257-41905276 Msa0251690:intron 30.0%
CTAAAGTAAGCTCAATAATG+GGG - chr2_2:41903289-41903308 Msa0251690:three_prime_UTR 30.0%
GATAATTTCTTGTCGGAATT+TGG + chr2_2:41903442-41903461 None:intergenic 30.0%
TTCTGTCGATAATTTCTTGT+CGG + chr2_2:41903449-41903468 None:intergenic 30.0%
CTTTGCATATGTGTTTGTAT+AGG - chr2_2:41903553-41903572 Msa0251690:three_prime_UTR 30.0%
CAAACAAGTGTGTAATCAAT+TGG + chr2_2:41903820-41903839 None:intergenic 30.0%
CAATTGATTACACACTTGTT+TGG - chr2_2:41903818-41903837 Msa0251690:CDS 30.0%
GTGAGATTAATTCATGGATT+TGG - chr2_2:41904001-41904020 Msa0251690:CDS 30.0%
GAGATTAATTCATGGATTTG+GGG - chr2_2:41904003-41904022 Msa0251690:CDS 30.0%
TATGTTAGACCAATCAATAG+AGG - chr2_2:41904066-41904085 Msa0251690:CDS 30.0%
TGAAACAAGAAATAGGAAGA+GGG + chr2_2:41904155-41904174 None:intergenic 30.0%
TTGAAACAAGAAATAGGAAG+AGG + chr2_2:41904156-41904175 None:intergenic 30.0%
GCCTAATTTACCTCAAATTA+AGG - chr2_2:41904206-41904225 Msa0251690:CDS 30.0%
! GCCTTAATTTGAGGTAAATT+AGG + chr2_2:41904210-41904229 None:intergenic 30.0%
! CTTGGTTGAAACTTTTCATT+AGG + chr2_2:41904270-41904289 None:intergenic 30.0%
AAATACCATTTGGTTGAACT+TGG + chr2_2:41904288-41904307 None:intergenic 30.0%
ACCAAATGGTATTTCACAAA+TGG - chr2_2:41904294-41904313 Msa0251690:CDS 30.0%
CCAAATGGTATTTCACAAAT+GGG - chr2_2:41904295-41904314 Msa0251690:CDS 30.0%
CAAATGGTATTTCACAAATG+GGG - chr2_2:41904296-41904315 Msa0251690:CDS 30.0%
GGTGATTTCAAAAATTGTCA+AGG - chr2_2:41904462-41904481 Msa0251690:CDS 30.0%
AAAAGGGTAAAAAATCCACA+TGG + chr2_2:41904535-41904554 None:intergenic 30.0%
CTCATAGATAACATTTCACT+TGG - chr2_2:41904582-41904601 Msa0251690:CDS 30.0%
AACATTTCACTTGGTAAGAT+TGG - chr2_2:41904591-41904610 Msa0251690:CDS 30.0%
ACAACATAGTAATGGTCAAT+GGG - chr2_2:41904692-41904711 Msa0251690:CDS 30.0%
TTTAATGAAGAATAAGCCAC+TGG + chr2_2:41904756-41904775 None:intergenic 30.0%
GTGGCTTATTCTTCATTAAA+TGG - chr2_2:41904756-41904775 Msa0251690:CDS 30.0%
TATTTATCCAAAAGCTGGAT+TGG - chr2_2:41904785-41904804 Msa0251690:CDS 30.0%
TGAAACTAAGAAGAGTGATT+TGG - chr2_2:41904842-41904861 Msa0251690:CDS 30.0%
GAAACTAAGAAGAGTGATTT+GGG - chr2_2:41904843-41904862 Msa0251690:CDS 30.0%
!!! AGTGATTTGGGTATTGATTT+TGG - chr2_2:41904855-41904874 Msa0251690:CDS 30.0%
!!! GGGTGAATTTTTTTAGACAA+TGG - chr2_2:41904937-41904956 Msa0251690:CDS 30.0%
!!! GCGTTTTTAAGTAACTTCTT+AGG - chr2_2:41905257-41905276 Msa0251690:intron 30.0%
! AGCTTAAATGTGGTGTCAAT+GGG + chr2_2:41903351-41903370 None:intergenic 35.0%
! AAGCTTAAATGTGGTGTCAA+TGG + chr2_2:41903352-41903371 None:intergenic 35.0%
TGGTGACAATACTATCAAGA+AGG + chr2_2:41903422-41903441 None:intergenic 35.0%
TGCATATGTGTTTGTATAGG+TGG - chr2_2:41903556-41903575 Msa0251690:three_prime_UTR 35.0%
ATATGTGTTTGTATAGGTGG+TGG - chr2_2:41903559-41903578 Msa0251690:three_prime_UTR 35.0%
!! GGTAATGGAATCATTGATCT+AGG - chr2_2:41903586-41903605 Msa0251690:exon 35.0%
AATGGAATCATTGATCTAGG+TGG - chr2_2:41903589-41903608 Msa0251690:exon 35.0%
AAAATCTGGACAACCTTAGA+AGG - chr2_2:41903643-41903662 Msa0251690:CDS 35.0%
!! CCAAATAGAGGTTTGTTGTT+TGG + chr2_2:41903751-41903770 None:intergenic 35.0%
CCAAACAACAAACCTCTATT+TGG - chr2_2:41903748-41903767 Msa0251690:CDS 35.0%
ACAACAAACCTCTATTTGGT+TGG - chr2_2:41903752-41903771 Msa0251690:CDS 35.0%
CAACAAACCTCTATTTGGTT+GGG - chr2_2:41903753-41903772 Msa0251690:CDS 35.0%
! CTATAACCATTAGGTGCTAT+TGG + chr2_2:41903895-41903914 None:intergenic 35.0%
CTAATGGTTATAGCCCTTTA+GGG - chr2_2:41903902-41903921 Msa0251690:CDS 35.0%
TTGTGACAATATGCCCTAAA+GGG + chr2_2:41903918-41903937 None:intergenic 35.0%
CATTGGATTCTATCAAGTGA+AGG + chr2_2:41903955-41903974 None:intergenic 35.0%
GCTTGAATACCTCTATTGAT+TGG + chr2_2:41904078-41904097 None:intergenic 35.0%
AAAGTTCCAACAAGAACACT+AGG + chr2_2:41904102-41904121 None:intergenic 35.0%
!!! GGAACTTTTTTAGCACATGT+TGG - chr2_2:41904114-41904133 Msa0251690:CDS 35.0%
TTAGGATGCAAGTACATGAA+AGG + chr2_2:41904252-41904271 None:intergenic 35.0%
TTCAACCAAGTTCAACCAAA+TGG - chr2_2:41904280-41904299 Msa0251690:CDS 35.0%
CCCATTTGTGAAATACCATT+TGG + chr2_2:41904298-41904317 None:intergenic 35.0%
AGGAGAAGAATCAAATCCAA+TGG - chr2_2:41904335-41904354 Msa0251690:CDS 35.0%
! CCTAATGGATCAATTTCCAT+TGG + chr2_2:41904354-41904373 None:intergenic 35.0%
CCAATGGAAATTGATCCATT+AGG - chr2_2:41904351-41904370 Msa0251690:CDS 35.0%
CATGTAAAACCAATGTTTGG+TGG - chr2_2:41904492-41904511 Msa0251690:CDS 35.0%
GTAAATGTTCCACCAAACAT+TGG + chr2_2:41904504-41904523 None:intergenic 35.0%
! TGGTGGAACATTTACTGATT+TGG - chr2_2:41904509-41904528 Msa0251690:CDS 35.0%
GGTAAGATTGGTGAACATAT+TGG - chr2_2:41904603-41904622 Msa0251690:CDS 35.0%
! TTGGTGAACATATTGGTGAT+TGG - chr2_2:41904610-41904629 Msa0251690:CDS 35.0%
! TGGTGAACATATTGGTGATT+GGG - chr2_2:41904611-41904630 Msa0251690:CDS 35.0%
! ATTGGGAGCATGTAACTTTA+AGG - chr2_2:41904628-41904647 Msa0251690:CDS 35.0%
! TTGGGAGCATGTAACTTTAA+GGG - chr2_2:41904629-41904648 Msa0251690:CDS 35.0%
CACAACATAGTAATGGTCAA+TGG - chr2_2:41904691-41904710 Msa0251690:CDS 35.0%
TCAGAAGTTGAGTTTCAAAG+TGG - chr2_2:41904723-41904742 Msa0251690:CDS 35.0%
TCAAAGTGGAAATAAACCAG+TGG - chr2_2:41904737-41904756 Msa0251690:CDS 35.0%
! CATGCTATTTATCCAAAAGC+TGG - chr2_2:41904780-41904799 Msa0251690:CDS 35.0%
!! AATTGTTTCTGGGGAGTATT+TGG - chr2_2:41904890-41904909 Msa0251690:CDS 35.0%
!! ATTGTTTCTGGGGAGTATTT+GGG - chr2_2:41904891-41904910 Msa0251690:CDS 35.0%
CTAAAAAAATTCACCCAACC+TGG + chr2_2:41904933-41904952 None:intergenic 35.0%
!! AAATTGCCCAATGAGTTGAT+AGG - chr2_2:41905026-41905045 Msa0251690:CDS 35.0%
TCTTCACCTATCAACTCATT+GGG + chr2_2:41905035-41905054 None:intergenic 35.0%
TTCTTCACCTATCAACTCAT+TGG + chr2_2:41905036-41905055 None:intergenic 35.0%
!! AATGAGTTGATAGGTGAAGA+AGG - chr2_2:41905035-41905054 Msa0251690:CDS 35.0%
!! ATGAGTTGATAGGTGAAGAA+GGG - chr2_2:41905036-41905055 Msa0251690:CDS 35.0%
ATCCAATTTCTCTTCTCCTT+AGG + chr2_2:41905071-41905090 None:intergenic 35.0%
AAGGAGAAGAGAAATTGGAT+TGG - chr2_2:41905071-41905090 Msa0251690:CDS 35.0%
!!! GCTTTTTTCCACATAAGAAG+TGG - chr2_2:41905119-41905138 Msa0251690:intron 35.0%
TTTGTAAAATGCTCTCATCG+TGG - chr2_2:41905475-41905494 Msa0251690:five_prime_UTR 35.0%
! GGTTGGCAAATTTAAAACCA+TGG - chr2_2:41905496-41905515 Msa0251690:five_prime_UTR 35.0%
! AGCTTAAATGTGGTGTCAAT+GGG + chr2_2:41903351-41903370 None:intergenic 35.0%
! AAGCTTAAATGTGGTGTCAA+TGG + chr2_2:41903352-41903371 None:intergenic 35.0%
TGGTGACAATACTATCAAGA+AGG + chr2_2:41903422-41903441 None:intergenic 35.0%
TGCATATGTGTTTGTATAGG+TGG - chr2_2:41903556-41903575 Msa0251690:three_prime_UTR 35.0%
ATATGTGTTTGTATAGGTGG+TGG - chr2_2:41903559-41903578 Msa0251690:three_prime_UTR 35.0%
!! GGTAATGGAATCATTGATCT+AGG - chr2_2:41903586-41903605 Msa0251690:exon 35.0%
AATGGAATCATTGATCTAGG+TGG - chr2_2:41903589-41903608 Msa0251690:exon 35.0%
AAAATCTGGACAACCTTAGA+AGG - chr2_2:41903643-41903662 Msa0251690:CDS 35.0%
!! CCAAATAGAGGTTTGTTGTT+TGG + chr2_2:41903751-41903770 None:intergenic 35.0%
CCAAACAACAAACCTCTATT+TGG - chr2_2:41903748-41903767 Msa0251690:CDS 35.0%
ACAACAAACCTCTATTTGGT+TGG - chr2_2:41903752-41903771 Msa0251690:CDS 35.0%
CAACAAACCTCTATTTGGTT+GGG - chr2_2:41903753-41903772 Msa0251690:CDS 35.0%
! CTATAACCATTAGGTGCTAT+TGG + chr2_2:41903895-41903914 None:intergenic 35.0%
CTAATGGTTATAGCCCTTTA+GGG - chr2_2:41903902-41903921 Msa0251690:CDS 35.0%
TTGTGACAATATGCCCTAAA+GGG + chr2_2:41903918-41903937 None:intergenic 35.0%
CATTGGATTCTATCAAGTGA+AGG + chr2_2:41903955-41903974 None:intergenic 35.0%
GCTTGAATACCTCTATTGAT+TGG + chr2_2:41904078-41904097 None:intergenic 35.0%
AAAGTTCCAACAAGAACACT+AGG + chr2_2:41904102-41904121 None:intergenic 35.0%
!!! GGAACTTTTTTAGCACATGT+TGG - chr2_2:41904114-41904133 Msa0251690:CDS 35.0%
TTAGGATGCAAGTACATGAA+AGG + chr2_2:41904252-41904271 None:intergenic 35.0%
TTCAACCAAGTTCAACCAAA+TGG - chr2_2:41904280-41904299 Msa0251690:CDS 35.0%
CCCATTTGTGAAATACCATT+TGG + chr2_2:41904298-41904317 None:intergenic 35.0%
AGGAGAAGAATCAAATCCAA+TGG - chr2_2:41904335-41904354 Msa0251690:CDS 35.0%
! CCTAATGGATCAATTTCCAT+TGG + chr2_2:41904354-41904373 None:intergenic 35.0%
CCAATGGAAATTGATCCATT+AGG - chr2_2:41904351-41904370 Msa0251690:CDS 35.0%
CATGTAAAACCAATGTTTGG+TGG - chr2_2:41904492-41904511 Msa0251690:CDS 35.0%
GTAAATGTTCCACCAAACAT+TGG + chr2_2:41904504-41904523 None:intergenic 35.0%
! TGGTGGAACATTTACTGATT+TGG - chr2_2:41904509-41904528 Msa0251690:CDS 35.0%
GGTAAGATTGGTGAACATAT+TGG - chr2_2:41904603-41904622 Msa0251690:CDS 35.0%
! TTGGTGAACATATTGGTGAT+TGG - chr2_2:41904610-41904629 Msa0251690:CDS 35.0%
! TGGTGAACATATTGGTGATT+GGG - chr2_2:41904611-41904630 Msa0251690:CDS 35.0%
! ATTGGGAGCATGTAACTTTA+AGG - chr2_2:41904628-41904647 Msa0251690:CDS 35.0%
! TTGGGAGCATGTAACTTTAA+GGG - chr2_2:41904629-41904648 Msa0251690:CDS 35.0%
CACAACATAGTAATGGTCAA+TGG - chr2_2:41904691-41904710 Msa0251690:CDS 35.0%
TCAGAAGTTGAGTTTCAAAG+TGG - chr2_2:41904723-41904742 Msa0251690:CDS 35.0%
TCAAAGTGGAAATAAACCAG+TGG - chr2_2:41904737-41904756 Msa0251690:CDS 35.0%
! CATGCTATTTATCCAAAAGC+TGG - chr2_2:41904780-41904799 Msa0251690:CDS 35.0%
!! AATTGTTTCTGGGGAGTATT+TGG - chr2_2:41904890-41904909 Msa0251690:CDS 35.0%
!! ATTGTTTCTGGGGAGTATTT+GGG - chr2_2:41904891-41904910 Msa0251690:CDS 35.0%
CTAAAAAAATTCACCCAACC+TGG + chr2_2:41904933-41904952 None:intergenic 35.0%
!! AAATTGCCCAATGAGTTGAT+AGG - chr2_2:41905026-41905045 Msa0251690:CDS 35.0%
TCTTCACCTATCAACTCATT+GGG + chr2_2:41905035-41905054 None:intergenic 35.0%
TTCTTCACCTATCAACTCAT+TGG + chr2_2:41905036-41905055 None:intergenic 35.0%
!! AATGAGTTGATAGGTGAAGA+AGG - chr2_2:41905035-41905054 Msa0251690:CDS 35.0%
!! ATGAGTTGATAGGTGAAGAA+GGG - chr2_2:41905036-41905055 Msa0251690:CDS 35.0%
ATCCAATTTCTCTTCTCCTT+AGG + chr2_2:41905071-41905090 None:intergenic 35.0%
AAGGAGAAGAGAAATTGGAT+TGG - chr2_2:41905071-41905090 Msa0251690:CDS 35.0%
!!! GCTTTTTTCCACATAAGAAG+TGG - chr2_2:41905119-41905138 Msa0251690:intron 35.0%
TTTGTAAAATGCTCTCATCG+TGG - chr2_2:41905475-41905494 Msa0251690:five_prime_UTR 35.0%
! GGTTGGCAAATTTAAAACCA+TGG - chr2_2:41905496-41905515 Msa0251690:five_prime_UTR 35.0%
ACACGCCAAAATGATTGTGA+AGG - chr2_2:41903180-41903199 Msa0251690:three_prime_UTR 40.0%
AGAGATTGAATGCTGTGTGT+GGG + chr2_2:41903266-41903285 None:intergenic 40.0%
AAGAGATTGAATGCTGTGTG+TGG + chr2_2:41903267-41903286 None:intergenic 40.0%
GTTAGCTGGAAGCTTAAATG+TGG + chr2_2:41903361-41903380 None:intergenic 40.0%
AACATACCAACTTTGCCACA+AGG - chr2_2:41903378-41903397 Msa0251690:three_prime_UTR 40.0%
TGAAAGAGATGAGTACCTTG+TGG + chr2_2:41903396-41903415 None:intergenic 40.0%
!! GTTTGTATAGGTGGTGGATT+TGG - chr2_2:41903565-41903584 Msa0251690:three_prime_UTR 40.0%
!! ATAGGTGGTGGATTTGGTAA+TGG - chr2_2:41903571-41903590 Msa0251690:three_prime_UTR 40.0%
GCAACTTTCTTTGAACCAAC+AGG - chr2_2:41903685-41903704 Msa0251690:CDS 40.0%
! AAACCTTGAGGTATTCCTGT+TGG + chr2_2:41903703-41903722 None:intergenic 40.0%
CCTAATGTGAAGAAACCTTG+AGG + chr2_2:41903715-41903734 None:intergenic 40.0%
CCTCAAGGTTTCTTCACATT+AGG - chr2_2:41903712-41903731 Msa0251690:CDS 40.0%
ACTAGAACCCAACCAAATAG+AGG + chr2_2:41903763-41903782 None:intergenic 40.0%
GTTGCCAAAGATGAGTCAAA+TGG - chr2_2:41903781-41903800 Msa0251690:CDS 40.0%
TGCTCCATTTGACTCATCTT+TGG + chr2_2:41903788-41903807 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_2:41903886-41903905 Msa0251690:CDS 40.0%
CCTAAAGGGCTATAACCATT+AGG + chr2_2:41903904-41903923 None:intergenic 40.0%
CCTAATGGTTATAGCCCTTT+AGG - chr2_2:41903901-41903920 Msa0251690:CDS 40.0%
GTTGTGACAATATGCCCTAA+AGG + chr2_2:41903919-41903938 None:intergenic 40.0%
! CTATCAAGTGAAGGCTTTTC+AGG + chr2_2:41903946-41903965 None:intergenic 40.0%
TGAGATCTGATCTCACACAT+TGG + chr2_2:41903972-41903991 None:intergenic 40.0%
! TGTGCTAGTGCCTTAATTTG+AGG + chr2_2:41904219-41904238 None:intergenic 40.0%
!! GGGGCATTGCTTTATAAGAA+AGG - chr2_2:41904315-41904334 Msa0251690:CDS 40.0%
TGAGGAAGATTTGAGCCTAA+TGG + chr2_2:41904369-41904388 None:intergenic 40.0%
TTAGGCTCAAATCTTCCTCA+AGG - chr2_2:41904369-41904388 Msa0251690:CDS 40.0%
! GAAGCAATGATGGTGCTTAT+TGG - chr2_2:41904394-41904413 Msa0251690:CDS 40.0%
! CAATGATGGTGCTTATTGGT+TGG - chr2_2:41904398-41904417 Msa0251690:CDS 40.0%
!! CATTTACTGATTTGGCCATG+TGG - chr2_2:41904517-41904536 Msa0251690:CDS 40.0%
!! TTTTACCCTTTTAATGGGCC+TGG - chr2_2:41904543-41904562 Msa0251690:CDS 40.0%
! TGAAGAACCAATCCAGCTTT+TGG + chr2_2:41904795-41904814 None:intergenic 40.0%
!! AAAGCTGGATTGGTTCTTCA+AGG - chr2_2:41904795-41904814 Msa0251690:CDS 40.0%
! CTTCAAGGTACTAGTGAGAT+TGG - chr2_2:41904810-41904829 Msa0251690:CDS 40.0%
!! TTGTTTCTGGGGAGTATTTG+GGG - chr2_2:41904892-41904911 Msa0251690:CDS 40.0%
ATCAAATTGTTGAGCCAGGT+TGG - chr2_2:41904916-41904935 Msa0251690:CDS 40.0%
TCAAATTGTTGAGCCAGGTT+GGG - chr2_2:41904917-41904936 Msa0251690:CDS 40.0%
! TCATTGGGCAATTTAAAGCC+AGG + chr2_2:41905020-41905039 None:intergenic 40.0%
TAAAATGCTCTCATCGTGGT+TGG - chr2_2:41905479-41905498 Msa0251690:five_prime_UTR 40.0%
ACACGCCAAAATGATTGTGA+AGG - chr2_2:41903180-41903199 Msa0251690:three_prime_UTR 40.0%
AGAGATTGAATGCTGTGTGT+GGG + chr2_2:41903266-41903285 None:intergenic 40.0%
AAGAGATTGAATGCTGTGTG+TGG + chr2_2:41903267-41903286 None:intergenic 40.0%
GTTAGCTGGAAGCTTAAATG+TGG + chr2_2:41903361-41903380 None:intergenic 40.0%
AACATACCAACTTTGCCACA+AGG - chr2_2:41903378-41903397 Msa0251690:three_prime_UTR 40.0%
TGAAAGAGATGAGTACCTTG+TGG + chr2_2:41903396-41903415 None:intergenic 40.0%
!! GTTTGTATAGGTGGTGGATT+TGG - chr2_2:41903565-41903584 Msa0251690:three_prime_UTR 40.0%
!! ATAGGTGGTGGATTTGGTAA+TGG - chr2_2:41903571-41903590 Msa0251690:three_prime_UTR 40.0%
GCAACTTTCTTTGAACCAAC+AGG - chr2_2:41903685-41903704 Msa0251690:CDS 40.0%
! AAACCTTGAGGTATTCCTGT+TGG + chr2_2:41903703-41903722 None:intergenic 40.0%
CCTAATGTGAAGAAACCTTG+AGG + chr2_2:41903715-41903734 None:intergenic 40.0%
CCTCAAGGTTTCTTCACATT+AGG - chr2_2:41903712-41903731 Msa0251690:CDS 40.0%
ACTAGAACCCAACCAAATAG+AGG + chr2_2:41903763-41903782 None:intergenic 40.0%
GTTGCCAAAGATGAGTCAAA+TGG - chr2_2:41903781-41903800 Msa0251690:CDS 40.0%
TGCTCCATTTGACTCATCTT+TGG + chr2_2:41903788-41903807 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_2:41903886-41903905 Msa0251690:CDS 40.0%
CCTAAAGGGCTATAACCATT+AGG + chr2_2:41903904-41903923 None:intergenic 40.0%
CCTAATGGTTATAGCCCTTT+AGG - chr2_2:41903901-41903920 Msa0251690:CDS 40.0%
GTTGTGACAATATGCCCTAA+AGG + chr2_2:41903919-41903938 None:intergenic 40.0%
! CTATCAAGTGAAGGCTTTTC+AGG + chr2_2:41903946-41903965 None:intergenic 40.0%
TGAGATCTGATCTCACACAT+TGG + chr2_2:41903972-41903991 None:intergenic 40.0%
! TGTGCTAGTGCCTTAATTTG+AGG + chr2_2:41904219-41904238 None:intergenic 40.0%
!! GGGGCATTGCTTTATAAGAA+AGG - chr2_2:41904315-41904334 Msa0251690:CDS 40.0%
TGAGGAAGATTTGAGCCTAA+TGG + chr2_2:41904369-41904388 None:intergenic 40.0%
TTAGGCTCAAATCTTCCTCA+AGG - chr2_2:41904369-41904388 Msa0251690:CDS 40.0%
! GAAGCAATGATGGTGCTTAT+TGG - chr2_2:41904394-41904413 Msa0251690:CDS 40.0%
! CAATGATGGTGCTTATTGGT+TGG - chr2_2:41904398-41904417 Msa0251690:CDS 40.0%
!! CATTTACTGATTTGGCCATG+TGG - chr2_2:41904517-41904536 Msa0251690:CDS 40.0%
!! TTTTACCCTTTTAATGGGCC+TGG - chr2_2:41904543-41904562 Msa0251690:CDS 40.0%
! TGAAGAACCAATCCAGCTTT+TGG + chr2_2:41904795-41904814 None:intergenic 40.0%
!! AAAGCTGGATTGGTTCTTCA+AGG - chr2_2:41904795-41904814 Msa0251690:CDS 40.0%
! CTTCAAGGTACTAGTGAGAT+TGG - chr2_2:41904810-41904829 Msa0251690:CDS 40.0%
!! TTGTTTCTGGGGAGTATTTG+GGG - chr2_2:41904892-41904911 Msa0251690:CDS 40.0%
ATCAAATTGTTGAGCCAGGT+TGG - chr2_2:41904916-41904935 Msa0251690:CDS 40.0%
TCAAATTGTTGAGCCAGGTT+GGG - chr2_2:41904917-41904936 Msa0251690:CDS 40.0%
! TCATTGGGCAATTTAAAGCC+AGG + chr2_2:41905020-41905039 None:intergenic 40.0%
TAAAATGCTCTCATCGTGGT+TGG - chr2_2:41905479-41905498 Msa0251690:five_prime_UTR 40.0%
GAGATTGAATGCTGTGTGTG+GGG + chr2_2:41903265-41903284 None:intergenic 45.0%
!! CAATGGGAAGAGGCTTTTTC+TGG + chr2_2:41903335-41903354 None:intergenic 45.0%
! AATGTGGTGTCAATGGGAAG+AGG + chr2_2:41903345-41903364 None:intergenic 45.0%
!! GGCAAAGTTGGTATGTTAGC+TGG + chr2_2:41903375-41903394 None:intergenic 45.0%
TGAGTACCTTGTGGCAAAGT+TGG + chr2_2:41903387-41903406 None:intergenic 45.0%
ATCTGGACAACCTTAGAAGG+TGG - chr2_2:41903646-41903665 Msa0251690:CDS 45.0%
ACAACCTTAGAAGGTGGACA+AGG - chr2_2:41903652-41903671 Msa0251690:CDS 45.0%
GAACCAACAGGAATACCTCA+AGG - chr2_2:41903697-41903716 Msa0251690:CDS 45.0%
!!! AAGTGAAGGCTTTTCAGGTG+TGG + chr2_2:41903941-41903960 None:intergenic 45.0%
CAAGCTCCTAGTGTTCTTGT+TGG - chr2_2:41904093-41904112 Msa0251690:CDS 45.0%
ATGTGCCAGGCCCATTAAAA+GGG + chr2_2:41904551-41904570 None:intergenic 45.0%
AATGTGCCAGGCCCATTAAA+AGG + chr2_2:41904552-41904571 None:intergenic 45.0%
GGCCTGGCACATTAAAAGTT+GGG - chr2_2:41904559-41904578 Msa0251690:CDS 45.0%
! AGCCCAACTTTTAATGTGCC+AGG + chr2_2:41904564-41904583 None:intergenic 45.0%
GGGAATCAAATTGTTGAGCC+AGG - chr2_2:41904912-41904931 Msa0251690:CDS 45.0%
! AGGTGATGAGTTGGAGAAGT+TGG - chr2_2:41904983-41905002 Msa0251690:CDS 45.0%
! TGAGTTGGAGAAGTTGGAGA+AGG - chr2_2:41904989-41905008 Msa0251690:CDS 45.0%
GGCCTAAGGAGAAGAGAAAT+TGG - chr2_2:41905066-41905085 Msa0251690:CDS 45.0%
TAAAACCATGGCGTGTCAAG+TGG - chr2_2:41905508-41905527 Msa0251690:five_prime_UTR 45.0%
GAGATTGAATGCTGTGTGTG+GGG + chr2_2:41903265-41903284 None:intergenic 45.0%
!! CAATGGGAAGAGGCTTTTTC+TGG + chr2_2:41903335-41903354 None:intergenic 45.0%
! AATGTGGTGTCAATGGGAAG+AGG + chr2_2:41903345-41903364 None:intergenic 45.0%
!! GGCAAAGTTGGTATGTTAGC+TGG + chr2_2:41903375-41903394 None:intergenic 45.0%
TGAGTACCTTGTGGCAAAGT+TGG + chr2_2:41903387-41903406 None:intergenic 45.0%
ATCTGGACAACCTTAGAAGG+TGG - chr2_2:41903646-41903665 Msa0251690:CDS 45.0%
ACAACCTTAGAAGGTGGACA+AGG - chr2_2:41903652-41903671 Msa0251690:CDS 45.0%
GAACCAACAGGAATACCTCA+AGG - chr2_2:41903697-41903716 Msa0251690:CDS 45.0%
!!! AAGTGAAGGCTTTTCAGGTG+TGG + chr2_2:41903941-41903960 None:intergenic 45.0%
CAAGCTCCTAGTGTTCTTGT+TGG - chr2_2:41904093-41904112 Msa0251690:CDS 45.0%
ATGTGCCAGGCCCATTAAAA+GGG + chr2_2:41904551-41904570 None:intergenic 45.0%
AATGTGCCAGGCCCATTAAA+AGG + chr2_2:41904552-41904571 None:intergenic 45.0%
GGCCTGGCACATTAAAAGTT+GGG - chr2_2:41904559-41904578 Msa0251690:CDS 45.0%
! AGCCCAACTTTTAATGTGCC+AGG + chr2_2:41904564-41904583 None:intergenic 45.0%
GGGAATCAAATTGTTGAGCC+AGG - chr2_2:41904912-41904931 Msa0251690:CDS 45.0%
! AGGTGATGAGTTGGAGAAGT+TGG - chr2_2:41904983-41905002 Msa0251690:CDS 45.0%
! TGAGTTGGAGAAGTTGGAGA+AGG - chr2_2:41904989-41905008 Msa0251690:CDS 45.0%
GGCCTAAGGAGAAGAGAAAT+TGG - chr2_2:41905066-41905085 Msa0251690:CDS 45.0%
TAAAACCATGGCGTGTCAAG+TGG - chr2_2:41905508-41905527 Msa0251690:five_prime_UTR 45.0%
GGGGCAAGTGTGTGACTAAT+TGG + chr2_2:41903246-41903265 None:intergenic 50.0%
GTCACCTTGTCCACCTTCTA+AGG + chr2_2:41903659-41903678 None:intergenic 50.0%
GAAGGTGGACAAGGTGACTT+AGG - chr2_2:41903661-41903680 Msa0251690:CDS 50.0%
GGCTCAAATCTTCCTCAAGG+TGG - chr2_2:41904372-41904391 Msa0251690:CDS 50.0%
CCATCATTGCTTCCACCTTG+AGG + chr2_2:41904387-41904406 None:intergenic 50.0%
CCTCAAGGTGGAAGCAATGA+TGG - chr2_2:41904384-41904403 Msa0251690:CDS 50.0%
GGGCCTGGCACATTAAAAGT+TGG - chr2_2:41904558-41904577 Msa0251690:CDS 50.0%
GTTGGAGAAGTTGGAGAAGG+TGG - chr2_2:41904992-41905011 Msa0251690:CDS 50.0%
AAGTTGGAGAAGGTGGTTCC+TGG - chr2_2:41904999-41905018 Msa0251690:CDS 50.0%
! TAATGCCACTTGACACGCCA+TGG + chr2_2:41905516-41905535 None:intergenic 50.0%
GGGGCAAGTGTGTGACTAAT+TGG + chr2_2:41903246-41903265 None:intergenic 50.0%
GTCACCTTGTCCACCTTCTA+AGG + chr2_2:41903659-41903678 None:intergenic 50.0%
GAAGGTGGACAAGGTGACTT+AGG - chr2_2:41903661-41903680 Msa0251690:CDS 50.0%
GGCTCAAATCTTCCTCAAGG+TGG - chr2_2:41904372-41904391 Msa0251690:CDS 50.0%
CCATCATTGCTTCCACCTTG+AGG + chr2_2:41904387-41904406 None:intergenic 50.0%
CCTCAAGGTGGAAGCAATGA+TGG - chr2_2:41904384-41904403 Msa0251690:CDS 50.0%
GGGCCTGGCACATTAAAAGT+TGG - chr2_2:41904558-41904577 Msa0251690:CDS 50.0%
GTTGGAGAAGTTGGAGAAGG+TGG - chr2_2:41904992-41905011 Msa0251690:CDS 50.0%
AAGTTGGAGAAGGTGGTTCC+TGG - chr2_2:41904999-41905018 Msa0251690:CDS 50.0%
! TAATGCCACTTGACACGCCA+TGG + chr2_2:41905516-41905535 None:intergenic 50.0%
ATAGGTGAAGAAGGGCCCAC+TGG - chr2_2:41905044-41905063 Msa0251690:CDS 55.0%
TAGGTGAAGAAGGGCCCACT+GGG - chr2_2:41905045-41905064 Msa0251690:CDS 55.0%
CTCTTCTCCTTAGGCCCAGT+GGG + chr2_2:41905062-41905081 None:intergenic 55.0%
TCTCTTCTCCTTAGGCCCAG+TGG + chr2_2:41905063-41905082 None:intergenic 55.0%
ATAGGTGAAGAAGGGCCCAC+TGG - chr2_2:41905044-41905063 Msa0251690:CDS 55.0%
TAGGTGAAGAAGGGCCCACT+GGG - chr2_2:41905045-41905064 Msa0251690:CDS 55.0%
CTCTTCTCCTTAGGCCCAGT+GGG + chr2_2:41905062-41905081 None:intergenic 55.0%
TCTCTTCTCCTTAGGCCCAG+TGG + chr2_2:41905063-41905082 None:intergenic 55.0%
AGAAGGGCCCACTGGGCCTA+AGG - chr2_2:41905052-41905071 Msa0251690:CDS 65.0%
AGAAGGGCCCACTGGGCCTA+AGG - chr2_2:41905052-41905071 Msa0251690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 41903172 41905538 41903172 ID=Msa0251690;Name=Msa0251690
chr2_2 mRNA 41903172 41905538 41903172 ID=Msa0251690-mRNA-1;Parent=Msa0251690;Name=Msa0251690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=134|1|1|1|1|1|2|432|541
chr2_2 exon 41903172 41905135 41903172 ID=Msa0251690-mRNA-1:exon:13099;Parent=Msa0251690-mRNA-1
chr2_2 exon 41905311 41905538 41905311 ID=Msa0251690-mRNA-1:exon:13098;Parent=Msa0251690-mRNA-1
chr2_2 five_prime_UTR 41905405 41905538 41905405 ID=Msa0251690-mRNA-1:five_prime_utr;Parent=Msa0251690-mRNA-1
chr2_2 CDS 41905311 41905404 41905311 ID=Msa0251690-mRNA-1:cds;Parent=Msa0251690-mRNA-1
chr2_2 CDS 41903604 41905135 41903604 ID=Msa0251690-mRNA-1:cds;Parent=Msa0251690-mRNA-1
chr2_2 three_prime_UTR 41903172 41903603 41903172 ID=Msa0251690-mRNA-1:three_prime_utr;Parent=Msa0251690-mRNA-1
Gene Sequence

>Msa0251690

ATGGGGAACAATTCATCTTCTTCTAACCAGAAAAAGCCTCTTCCCATTGACACCACATTTAAGCTTCCAGCTAACATACCAACTTTGCCACAAGGTGGTGGATTTGGTAATGGAATCATTGATCTAGGTGGCCTAAAAGTGTCACAAATATCAACATTCAACAAAATCTGGACAACCTTAGAAGGTGGACAAGGTGACTTAGGAGCAACTTTCTTTGAACCAACAGGAATACCTCAAGGTTTCTTCACATTAGGTCACTATAGTCAACCAAACAACAAACCTCTATTTGGTTGGGTTCTAGTTGCCAAAGATGAGTCAAATGGAGCATTGAAAAAACCAATTGATTACACACTTGTTTGGAGTAGCAAGTCAGAAAAAATCAAACAAGATAAAGATGGTTACATTTGGTTACCAATAGCACCTAATGGTTATAGCCCTTTAGGGCATATTGTCACAACCACACCTGAAAAGCCTTCACTTGATAGAATCCAATGTGTGAGATCAGATCTCACTGATCAATGTGAGATTAATTCATGGATTTGGGGTAAAGATAAAAAAATTGATGAAAAAGGTTTCAATGTTCATTATGTTAGACCAATCAATAGAGGTATTCAAGCTCCTAGTGTTCTTGTTGGAACTTTTTTAGCACATGTTGGTGAAATTACAAATAGCCCTCTTCCTATTTCTTGTTTCAAAAATCTCAACTTTATGAATTTTTCATCAATGCCTAATTTACCTCAAATTAAGGCACTAGCACAAGCTTATTCTCCTTTCATGTACTTGCATCCTAATGAAAAGTTTCAACCAAGTTCAACCAAATGGTATTTCACAAATGGGGCATTGCTTTATAAGAAAGGAGAAGAATCAAATCCAATGGAAATTGATCCATTAGGCTCAAATCTTCCTCAAGGTGGAAGCAATGATGGTGCTTATTGGTTGGATCTTCCAAAAGATAAAGCTAATAGAGAAAGAGTCAAAAAAGGTGATTTCAAAAATTGTCAAGGTTATTTTCATGTAAAACCAATGTTTGGTGGAACATTTACTGATTTGGCCATGTGGATTTTTTACCCTTTTAATGGGCCTGGCACATTAAAAGTTGGGCTCATAGATAACATTTCACTTGGTAAGATTGGTGAACATATTGGTGATTGGGAGCATGTAACTTTAAGGGTAAGTAATTTCAATGGAGAGTTAAAAAGTGTTTATTTTTCACAACATAGTAATGGTCAATGGGTTGATGCTTCAGAAGTTGAGTTTCAAAGTGGAAATAAACCAGTGGCTTATTCTTCATTAAATGGTCATGCTATTTATCCAAAAGCTGGATTGGTTCTTCAAGGTACTAGTGAGATTGGAATAAAGAATGAAACTAAGAAGAGTGATTTGGGTATTGATTTTGGAGTTAATTTTGAAATTGTTTCTGGGGAGTATTTGGGGAATCAAATTGTTGAGCCAGGTTGGGTGAATTTTTTTAGACAATGGGGTCCTAAAATTACTTATAATTTAGGTGATGAGTTGGAGAAGTTGGAGAAGGTGGTTCCTGGCTTTAAATTGCCCAATGAGTTGATAGGTGAAGAAGGGCCCACTGGGCCTAAGGAGAAGAGAAATTGGATTGGTGATGAAATTTGA
Protein sequence

>Msa0251690

MGNNSSSSNQKKPLPIDTTFKLPANIPTLPQGGGFGNGIIDLGGLKVSQISTFNKIWTTLEGGQGDLGATFFEPTGIPQGFFTLGHYSQPNNKPLFGWVLVAKDESNGALKKPIDYTLVWSSKSEKIKQDKDGYIWLPIAPNGYSPLGHIVTTTPEKPSLDRIQCVRSDLTDQCEINSWIWGKDKKIDEKGFNVHYVRPINRGIQAPSVLVGTFLAHVGEITNSPLPISCFKNLNFMNFSSMPNLPQIKALAQAYSPFMYLHPNEKFQPSSTKWYFTNGALLYKKGEESNPMEIDPLGSNLPQGGSNDGAYWLDLPKDKANRERVKKGDFKNCQGYFHVKPMFGGTFTDLAMWIFYPFNGPGTLKVGLIDNISLGKIGEHIGDWEHVTLRVSNFNGELKSVYFSQHSNGQWVDASEVEFQSGNKPVAYSSLNGHAIYPKAGLVLQGTSEIGIKNETKKSDLGIDFGVNFEIVSGEYLGNQIVEPGWVNFFRQWGPKITYNLGDELEKLEKVVPGFKLPNELIGEEGPTGPKEKRNWIGDEI*