AlfalfaGEDB | Msa0252230

M. sativa cultivar zhongmu-4 / Msa0252230

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00564.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252230	XP_039686569.1	96.368	1129	39	1	1	1129	1	1127	0.0	2260

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252230	sp\|Q9C9U5\|SIS8_ARATH	39.100	289	155	7	842	1123	743	1017	2.62e-51	200

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252230	A0A396J889	96.368	1129	39	1	1	1129	1	1127	0.0	2260

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0252230	Msa1432690	0.989869	5.195774e-180	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252230	MtrunA17_Chr2g0310781	96.368	1129	39	1	1	1129	1	1127	0.0	2260
Msa0252230	MtrunA17_Chr2g0310761	56.653	1225	423	25	1	1129	9	1221	0.0	1249
Msa0252230	MtrunA17_Chr8g0357611	57.430	895	277	15	313	1129	784	1652	0.0	949
Msa0252230	MtrunA17_Chr8g0357611	52.493	381	156	6	1	356	15	395	4.64e-104	360
Msa0252230	MtrunA17_Chr1g0196631	78.007	291	63	1	833	1123	886	1175	1.11e-157	500
Msa0252230	MtrunA17_Chr1g0196631	37.237	333	156	8	43	322	36	368	1.50e-45	179
Msa0252230	MtrunA17_Chr6g0461841	80.142	282	56	0	833	1114	953	1234	6.09e-156	497
Msa0252230	MtrunA17_Chr6g0461841	52.542	177	79	3	127	298	165	341	1.11e-43	173
Msa0252230	MtrunA17_Chr2g0305141	75.088	285	71	0	835	1119	1071	1355	9.29e-145	470
Msa0252230	MtrunA17_Chr2g0305141	47.853	163	77	2	151	305	171	333	1.17e-35	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0252230	AT1G79570.2	47.604	1273	485	32	1	1129	14	1248	0.0	1016
Msa0252230	AT1G79570.1	47.604	1273	485	32	1	1129	14	1248	0.0	1016
Msa0252230	AT1G16270.1	48.637	1211	403	34	32	1129	43	1147	0.0	963
Msa0252230	AT1G16270.2	48.637	1211	403	34	32	1129	43	1147	0.0	963
Msa0252230	AT1G16270.3	48.637	1211	403	34	32	1129	43	1147	0.0	963
Msa0252230	AT1G79570.4	44.877	1181	471	31	1	1039	14	1156	0.0	850
Msa0252230	AT1G79570.5	44.877	1181	471	31	1	1039	14	1156	0.0	850
Msa0252230	AT2G35050.1	54.880	625	221	12	504	1121	677	1247	0.0	635
Msa0252230	AT2G35050.1	38.574	477	227	15	2	427	16	477	6.49e-64	238
Msa0252230	AT2G35050.2	54.880	625	221	12	504	1121	677	1247	0.0	635

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Find 272 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACGAACCTAAAAGT+TGG	0.545075	2_2:-43140163	Msa0252230:CDS
AAAATCCCTTGTTGAGTATT+CGG	0.284776	2_2:+43141094	None:intergenic
AAACAAAATACTGATGGCAT+TGG	0.515839	2_2:-43135954	Msa0252230:three_prime_UTR
AAACGAAATACATTGGTTTC+TGG	0.153342	2_2:-43136929	Msa0252230:CDS
AAACGATATAAATGAATTGG+AGG	0.536578	2_2:-43141368	Msa0252230:CDS
AAAGTTGAAAAGTTGCAGTT+TGG	0.348108	2_2:+43143479	None:intergenic
AAAGTTGATCACCAAGGGCA+AGG	0.530160	2_2:-43140326	Msa0252230:CDS
AAATACATTGGTTTCTGGTG+GGG	0.544465	2_2:-43136924	Msa0252230:CDS
AAATACTGATGGCATTGGCA+TGG	0.588181	2_2:-43135949	Msa0252230:three_prime_UTR
AAATATTGACCATGAGCGTT+AGG	0.470599	2_2:+43141190	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAACAACAACTTGATT+TGG	-	chr2_2:43135905-43135924	Msa0252230:three_prime_UTR	30.0%
AAAGTTGAAAAGTTGCAGTT+TGG	+	chr2_2:43136068-43136087	None:intergenic	30.0%
AACCCTAGATTGATAAATCT+TGG	-	chr2_2:43136260-43136279	Msa0252230:intron	30.0%
ACCCTAGATTGATAAATCTT+GGG	-	chr2_2:43136261-43136280	Msa0252230:intron	30.0%
ACCCAAGATTTATCAATCTA+GGG	+	chr2_2:43136265-43136284	None:intergenic	30.0%
AACCCAAGATTTATCAATCT+AGG	+	chr2_2:43136266-43136285	None:intergenic	30.0%
TCCAATGATGTTTCATGTTT+AGG	-	chr2_2:43136360-43136379	Msa0252230:CDS	30.0%
TCCTAAACATGAAACATCAT+TGG	+	chr2_2:43136364-43136383	None:intergenic	30.0%
TTTCCTGATTTACTCTTGAA+TGG	-	chr2_2:43136420-43136439	Msa0252230:intron	30.0%
AATCCATTCAAGAGTAAATC+AGG	+	chr2_2:43136426-43136445	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	43135786	43143780	43135786	ID=Msa0252230;Name=Msa0252230
chr2_2	mRNA	43135786	43143780	43135786	ID=Msa0252230-mRNA-1;Parent=Msa0252230;Name=Msa0252230-mRNA-1;_AED=0.22;_eAED=0.22;_QI=492\|1\|1\|1\|0.77\|0.7\|10\|194\|1129
chr2_2	exon	43135786	43136173	43135786	ID=Msa0252230-mRNA-1:exon:13390;Parent=Msa0252230-mRNA-1
chr2_2	exon	43136322	43136409	43136322	ID=Msa0252230-mRNA-1:exon:13389;Parent=Msa0252230-mRNA-1
chr2_2	exon	43136856	43136978	43136856	ID=Msa0252230-mRNA-1:exon:13388;Parent=Msa0252230-mRNA-1
chr2_2	exon	43137064	43137211	43137064	ID=Msa0252230-mRNA-1:exon:13387;Parent=Msa0252230-mRNA-1
chr2_2	exon	43137896	43138059	43137896	ID=Msa0252230-mRNA-1:exon:13386;Parent=Msa0252230-mRNA-1
chr2_2	exon	43138151	43138303	43138151	ID=Msa0252230-mRNA-1:exon:13385;Parent=Msa0252230-mRNA-1
chr2_2	exon	43139668	43139748	43139668	ID=Msa0252230-mRNA-1:exon:13384;Parent=Msa0252230-mRNA-1
chr2_2	exon	43139842	43142412	43139842	ID=Msa0252230-mRNA-1:exon:13383;Parent=Msa0252230-mRNA-1
chr2_2	exon	43142455	43142502	43142455	ID=Msa0252230-mRNA-1:exon:13382;Parent=Msa0252230-mRNA-1
chr2_2	exon	43143469	43143780	43143469	ID=Msa0252230-mRNA-1:exon:13381;Parent=Msa0252230-mRNA-1
chr2_2	five_prime_UTR	43143469	43143780	43143469	ID=Msa0252230-mRNA-1:five_prime_utr;Parent=Msa0252230-mRNA-1
chr2_2	five_prime_UTR	43142455	43142502	43142455	ID=Msa0252230-mRNA-1:five_prime_utr;Parent=Msa0252230-mRNA-1
chr2_2	five_prime_UTR	43142281	43142412	43142281	ID=Msa0252230-mRNA-1:five_prime_utr;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43139842	43142280	43139842	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43139668	43139748	43139668	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43138151	43138303	43138151	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43137896	43138059	43137896	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43137064	43137211	43137064	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43136856	43136978	43136856	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43136322	43136409	43136322	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	CDS	43135980	43136173	43135980	ID=Msa0252230-mRNA-1:cds;Parent=Msa0252230-mRNA-1
chr2_2	three_prime_UTR	43135786	43135979	43135786	ID=Msa0252230-mRNA-1:three_prime_utr;Parent=Msa0252230-mRNA-1

Gene Sequence

>Msa0252230

ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAATAATGCATGACCACATGGATGGAATTTATATGAGTAGAAAACCACATGAACTCAATACATCGGAAGTTAAACCTGTACAGCATTATTCAATACAGACGGGTGAGGAATTCTCTCTTGAGTTTATGAGAGATAGGGCAAATATCGGGAAGCCTGTATTTTCAAATGTCAGTGATCCTAATTATACAACTGGTTATATGGAACTGAAAGGCATTTTAGGAATCAGTCATGGAGGATCTGAAACTGGATCAGACATGTCCATGCTATCAATGATGGATAAATATCCTAAAGAGTTTGATCGAAGCAACTACGGATCGATTCGATCGATACCAAGAACTTCGCTGCATCAGGACAACAGACAGTTTGTGCATGGATATGGCTCTTCCGAAAGTTATGATAACTCGTCAATTATGATGAAGTTTCTTTGTAGCTTCGGTGGTAGAATATTGCCACGGCCAAGTGATGGAAAGCTAAGGTATGTTGGAGGTCAAACGCGCATTCTCCGTATAAGAAAGGACATATCTTATCACGAGCTTATTCAAAAAGCGTTGATGATCTATAATCAGGTTCAGACAATTAAGTACCAGCTTCCCGGGGAAGATCTCGATGCCCTGGTATCTGTATCATCTGATGAGGATATACAGAACATGATGGAAGAATGTAATCATCTAGAAGATAGAGAAGGATCACAAAAGCTTAGGATGTTTTTGTTCTCAATCAGTGATTTGCAGGATGCTCAGTTTGGTCTCACCTCCATGGGCGATGATTCTGAAGTCCAGTATGTTATTGCTGTTAATGGCATGGACTTGGAGTCGAGAAAAAACTCAACTATGGTTGGTTTGAGCTTTTCTGCAAACGATATAAATGAATTGGAGGGGGAAAATATTGACAGACAGGGCAATGCTCCCCAGACGAACAATTTCGACTCATCATTGGCAACTCATTTTTCACAACCAATGCTACCAACTTCCTCGAATTCATACGGAATGTATCCAGTATTTTATGGCGATCAAATGATACGCCACGGTGAACCTAACGCTCATGGTCAATATTTTATGAATCATGGTGTTGATCCTTCTTATAAACCTTTTATGGAAGGGGCTCCTATTAACATGCTTCCTCATATGCCGAATACTCAACAAGGGATTTTTAATGAAGGCTATCCTCCTGGTGGAGTACAAGTGCAAAATTCAGAAGTACCTGAATCTTTGGCGAGAATGATGGCTGACAGTTCAATTCAGCAAGAAACACTATCGCTGTCTCCTTCTCAACTGTTTGACGGTTATATGAAAAATGATTTTCCAGAAGCATCCGTCGTAGTTACTGCTCCAGAGGGGAATTCATTGCCTCCGACAAGAACAAACCAACTCTCAGATAATGACGAGGTTTCTTCTACTTCCAGCAGTGCATTTGTTGCTGGTCCTTATGTTGATTCTCGCAACAATGCAGTTGACTTGAGTTGTCTTCACCCTCCTCCTCTTCCTAAAAGAGTTTATTATTCAGAAAGAATTCCAAGGGAGCAAGTAGAGTCGCTGAATCGATCCACAAAGTCAGATGACGCGGTCAATACTCAGTTTCAAGTTTCAGATTTACTTTCTGGTGTCAATTCGCAGGACTCAGCTATAGACTCGGGTAACACCTTGCATGATGGAAATCCGTCTAATCTAGCCAAGGAAATGAACATCACAGCGAAGCCCTTGCCTGCAGATGGCGAAGGAACCAAAGATATCTTAAATAAGGAGAATGCTGTTGTTATGTTGGGAACAGAAAATTATCGTAACGATAACCACAAAGAATCCCTGCTTGAAGGTAAATCAGACATCCCTGTGAAAGAATCAAATGGTGATTTTAACATGCAAGCACCAGCTGTTCCTTTGAATGCGAACACAACTGCGAAAGTTGATCACCAAGGGCAAGGGGACATTCTTATTGATATTAATGATCGATTTCCACGCGAATTGCTTAATGATATGTTCTCCAAAGCAATACTAGAAGAAGAAGATTCCTCTAGTCAACATCCATTAGCTTCAGATGGAATGGGTTTAAGTATAAACATGGAAAATCACGAACCTAAAAGTTGGTCGTATTTTCAAAAATTGGCGCAAGAAGGGCACGACAATGCATCTCTTATTGATCAGGATCATCTTGGTTTTTCACCTGGTGTAGTTGGAGATAATAGAGCTCAACATGTTGCACCTTTAACAACTGATGAAGTTCCACTAAACCATGCAGAATTCCATCTCAATTTTGGTGAAGAAATTCAGAAAGACTTGCATGGAGAAAATGAAGCTGAAACTACTGTTCTGAAATCAAATTTTGATCAGTCTCAAATTAATGACACTGAAAGTATGCAATTTGGTGCTATGATAGAAAACCTAAGAGCAGAAGAGTCAGAATATGAGGTCGAAAAGTTTGAAAAGAAAAATAGCAGTCTACCTCCTCTTGATCCTTCTTTAGGAGAATTTGATATGAGTACTTTGCAGGTCATAATGAATGAAGATCTTGAAGAGCTGAAGGAACTAGGTTCCGGTACCTTTGGAACTGTATATCATGGAAAATGGCGAGGAACAGACGTTGCAATTAAGAGAATAAAGAAGACTTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTTGAGTTTTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCGTTTTATGGTGTAGTTCAAAATGGACCAGGAGGAACAATGGCAACTGTTACAGAGTATATGGTTGATGGTTCTCTTAGGCATGTCTTGCTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCCAAAAATATTGTGCATTTTGACTTAAAATGTGACAATTTACTTGTAAACTTAAAAGATCCATTACGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAACGAAATACATTGGTTTCTGGTGGGGTGCGAGGCACTTTACCTTGGATGGCACCAGAGCTGCTGAATGGTAGCAGCAGCAAGGTCTCCGAAAAGGTTGACGTGTTCTCGTTTGGCATAGTACTATGGGAGATTCTTACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGAATTGTCAACAACACACTAAGGCCAACAATTCCAAATTATTGTGATATTGAATGGAGAACACTTATGGAGCAATGTTGGGCACCAAATCCTGCAGTTAGGCCATCCTTCACAGAAATAGCGAGTCGACTACGCACTATGACAACTGCAGCCGTCCCAACCAAATCACCAGGTCACAAGGCATCCAAATGA

Protein sequence

>Msa0252230

MDPRNEYQPGSQSIMHDHMDGIYMSRKPHELNTSEVKPVQHYSIQTGEEFSLEFMRDRANIGKPVFSNVSDPNYTTGYMELKGILGISHGGSETGSDMSMLSMMDKYPKEFDRSNYGSIRSIPRTSLHQDNRQFVHGYGSSESYDNSSIMMKFLCSFGGRILPRPSDGKLRYVGGQTRILRIRKDISYHELIQKALMIYNQVQTIKYQLPGEDLDALVSVSSDEDIQNMMEECNHLEDREGSQKLRMFLFSISDLQDAQFGLTSMGDDSEVQYVIAVNGMDLESRKNSTMVGLSFSANDINELEGENIDRQGNAPQTNNFDSSLATHFSQPMLPTSSNSYGMYPVFYGDQMIRHGEPNAHGQYFMNHGVDPSYKPFMEGAPINMLPHMPNTQQGIFNEGYPPGGVQVQNSEVPESLARMMADSSIQQETLSLSPSQLFDGYMKNDFPEASVVVTAPEGNSLPPTRTNQLSDNDEVSSTSSSAFVAGPYVDSRNNAVDLSCLHPPPLPKRVYYSERIPREQVESLNRSTKSDDAVNTQFQVSDLLSGVNSQDSAIDSGNTLHDGNPSNLAKEMNITAKPLPADGEGTKDILNKENAVVMLGTENYRNDNHKESLLEGKSDIPVKESNGDFNMQAPAVPLNANTTAKVDHQGQGDILIDINDRFPRELLNDMFSKAILEEEDSSSQHPLASDGMGLSINMENHEPKSWSYFQKLAQEGHDNASLIDQDHLGFSPGVVGDNRAQHVAPLTTDEVPLNHAEFHLNFGEEIQKDLHGENEAETTVLKSNFDQSQINDTESMQFGAMIENLRAEESEYEVEKFEKKNSSLPPLDPSLGEFDMSTLQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKTCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQNGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDIEWRTLMEQCWAPNPAVRPSFTEIASRLRTMTTAAVPTKSPGHKASK*