Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254320 | XP_024632343.1 | 93.018 | 444 | 27 | 2 | 1 | 441 | 1 | 443 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254320 | sp|Q9SYM4|TPS1_ARATH | 72.831 | 438 | 88 | 5 | 9 | 441 | 1 | 412 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254320 | A0A396JEH8 | 93.018 | 444 | 27 | 2 | 1 | 441 | 1 | 443 | 0.0 | 816 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0254320 | Msa0293500 | 0.809551 | 1.789383e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254320 | MtrunA17_Chr2g0314621 | 93.018 | 444 | 27 | 2 | 1 | 441 | 1 | 443 | 0.0 | 816 |
| Msa0254320 | MtrunA17_Chr8g0359371 | 70.843 | 439 | 87 | 5 | 9 | 441 | 1 | 404 | 0.0 | 597 |
| Msa0254320 | MtrunA17_Chr8g0380051 | 80.488 | 328 | 56 | 1 | 115 | 442 | 70 | 389 | 0.0 | 569 |
| Msa0254320 | MtrunA17_Chr1g0209251 | 40.988 | 344 | 186 | 10 | 120 | 450 | 58 | 397 | 1.39e-74 | 250 |
| Msa0254320 | MtrunA17_Chr8g0391971 | 41.566 | 332 | 176 | 9 | 120 | 436 | 59 | 387 | 1.48e-74 | 250 |
| Msa0254320 | MtrunA17_Chr1g0161531 | 40.426 | 329 | 182 | 7 | 120 | 436 | 61 | 387 | 1.17e-72 | 245 |
| Msa0254320 | MtrunA17_Chr4g0041381 | 37.615 | 327 | 186 | 8 | 122 | 436 | 67 | 387 | 7.28e-70 | 237 |
| Msa0254320 | MtrunA17_Chr8g0364961 | 40.116 | 344 | 175 | 12 | 120 | 443 | 52 | 384 | 5.23e-69 | 235 |
| Msa0254320 | MtrunA17_Chr4g0073041 | 39.412 | 340 | 186 | 10 | 120 | 444 | 55 | 389 | 3.12e-68 | 233 |
| Msa0254320 | MtrunA17_Chr3g0117891 | 38.246 | 285 | 166 | 6 | 160 | 438 | 21 | 301 | 4.53e-57 | 201 |
| Msa0254320 | MtrunA17_Chr3g0107401 | 34.969 | 326 | 197 | 8 | 123 | 438 | 1 | 321 | 2.13e-48 | 174 |
| Msa0254320 | MtrunA17_Chr3g0107421 | 38.168 | 131 | 77 | 1 | 312 | 438 | 1 | 131 | 3.01e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254320 | AT1G78580.4 | 72.831 | 438 | 88 | 5 | 9 | 441 | 1 | 412 | 0.0 | 629 |
| Msa0254320 | AT1G78580.1 | 72.831 | 438 | 88 | 5 | 9 | 441 | 1 | 412 | 0.0 | 629 |
| Msa0254320 | AT1G78580.2 | 72.831 | 438 | 88 | 5 | 9 | 441 | 1 | 412 | 0.0 | 629 |
| Msa0254320 | AT1G78580.3 | 72.831 | 438 | 88 | 5 | 9 | 441 | 1 | 412 | 0.0 | 629 |
| Msa0254320 | AT1G16980.2 | 66.767 | 331 | 108 | 2 | 114 | 443 | 5 | 334 | 6.15e-164 | 478 |
| Msa0254320 | AT1G16980.1 | 66.767 | 331 | 108 | 2 | 114 | 443 | 5 | 334 | 1.08e-162 | 479 |
| Msa0254320 | AT4G27550.1 | 67.081 | 322 | 105 | 1 | 120 | 441 | 3 | 323 | 1.24e-156 | 463 |
| Msa0254320 | AT4G27550.2 | 67.081 | 322 | 105 | 1 | 120 | 441 | 3 | 323 | 1.70e-156 | 462 |
| Msa0254320 | AT1G68020.1 | 36.883 | 385 | 213 | 9 | 93 | 450 | 26 | 407 | 3.44e-75 | 249 |
| Msa0254320 | AT4G17770.1 | 41.718 | 326 | 179 | 8 | 119 | 436 | 58 | 380 | 2.51e-74 | 250 |
| Msa0254320 | AT4G17770.2 | 41.718 | 326 | 179 | 8 | 119 | 436 | 58 | 380 | 2.51e-74 | 250 |
| Msa0254320 | AT1G68020.2 | 36.883 | 385 | 213 | 9 | 93 | 450 | 26 | 407 | 7.53e-74 | 248 |
| Msa0254320 | AT1G68020.3 | 36.883 | 385 | 213 | 9 | 93 | 450 | 26 | 407 | 7.53e-74 | 248 |
| Msa0254320 | AT1G23870.1 | 40.000 | 345 | 186 | 8 | 120 | 449 | 58 | 396 | 8.52e-72 | 243 |
| Msa0254320 | AT1G06410.3 | 37.838 | 333 | 192 | 8 | 122 | 443 | 60 | 388 | 1.62e-70 | 239 |
| Msa0254320 | AT1G06410.1 | 37.838 | 333 | 192 | 8 | 122 | 443 | 60 | 388 | 1.62e-70 | 239 |
| Msa0254320 | AT1G06410.2 | 37.838 | 333 | 192 | 8 | 122 | 443 | 60 | 388 | 1.62e-70 | 239 |
| Msa0254320 | AT2G18700.1 | 41.716 | 338 | 166 | 10 | 117 | 437 | 49 | 372 | 2.45e-70 | 239 |
| Msa0254320 | AT1G60140.3 | 38.017 | 363 | 198 | 10 | 109 | 450 | 41 | 397 | 7.09e-70 | 236 |
| Msa0254320 | AT1G60140.6 | 38.292 | 363 | 197 | 10 | 109 | 450 | 41 | 397 | 1.48e-69 | 237 |
| Msa0254320 | AT1G60140.1 | 38.292 | 363 | 197 | 10 | 109 | 450 | 41 | 397 | 1.48e-69 | 237 |
| Msa0254320 | AT1G60140.2 | 38.292 | 363 | 197 | 10 | 109 | 450 | 41 | 397 | 1.48e-69 | 237 |
| Msa0254320 | AT1G60140.5 | 38.292 | 363 | 197 | 10 | 109 | 450 | 41 | 397 | 1.48e-69 | 237 |
| Msa0254320 | AT1G60140.4 | 38.292 | 363 | 197 | 10 | 109 | 450 | 41 | 397 | 1.48e-69 | 237 |
| Msa0254320 | AT1G70290.1 | 38.192 | 343 | 195 | 7 | 120 | 449 | 56 | 394 | 1.59e-67 | 231 |
| Msa0254320 | AT1G70290.2 | 33.038 | 339 | 180 | 7 | 120 | 449 | 56 | 356 | 3.31e-47 | 174 |
Find 107 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCGCCTTGATATGATTAA+AGG | 0.212944 | 2_2:-47240259 | Msa0254320:CDS |
| TTGCTGCTGCGGCACCTTCC+AGG | 0.216150 | 2_2:+47244706 | None:intergenic |
| TTGAATGGAGCTTGGACTTT+AGG | 0.225427 | 2_2:+47242891 | None:intergenic |
| CCTTGATCCTCAACCCCTTC+TGG | 0.232175 | 2_2:+47243148 | None:intergenic |
| GACTTAGTAGAAAGATTTAA+AGG | 0.246177 | 2_2:-47242867 | Msa0254320:CDS |
| ATCTCTTCAGTAAGAAATAC+TGG | 0.261585 | 2_2:+47243944 | None:intergenic |
| GAAGTCCAAGGTAATGAAAA+AGG | 0.305878 | 2_2:+47243876 | None:intergenic |
| ACCAAAAGCCGTTGTCTAAC+AGG | 0.312325 | 2_2:+47244645 | None:intergenic |
| CTTGATTGACAGGTAATGTT+AGG | 0.321743 | 2_2:-47240286 | Msa0254320:intron |
| TGCAGTTCTTGCTGCTGATT+TGG | 0.326704 | 2_2:-47243591 | Msa0254320:CDS |
| ACCTGTTAGACAACGGCTTT+TGG | 0.329060 | 2_2:-47244646 | Msa0254320:CDS |
| AGTGCGTGTACTCGCATTCT+TGG | 0.329884 | 2_2:-47243184 | Msa0254320:CDS |
| GTCTCAGTTTGATTCGTATC+AGG | 0.339640 | 2_2:-47243816 | Msa0254320:CDS |
| TTCCATCTTCTGAAATTCAT+AGG | 0.354834 | 2_2:-47243643 | Msa0254320:CDS |
| TTCTTGCTGCTGATTTGGTT+GGG | 0.357058 | 2_2:-47243586 | Msa0254320:intron |
| GATTGCCAGTTTCAGCTGTT+AGG | 0.366327 | 2_2:-47244611 | Msa0254320:CDS |
| TTCCCATGTTGAACGATTCC+TGG | 0.370441 | 2_2:-47244724 | Msa0254320:CDS |
| CTTTCTACTAAGTCTTTGAA+TGG | 0.373848 | 2_2:+47242876 | None:intergenic |
| GTTTGCGGATGTTGTAAATC+AGG | 0.385216 | 2_2:-47243780 | Msa0254320:CDS |
| TGAATTTCAGAAGATGGAAA+TGG | 0.390033 | 2_2:+47243647 | None:intergenic |
| GTTCTTGCTGCTGATTTGGT+TGG | 0.402449 | 2_2:-47243587 | Msa0254320:CDS |
| TTACCATTACACTTGTTTCC+AGG | 0.408430 | 2_2:+47244969 | None:intergenic |
| TTACAACATCCGCAAACATT+TGG | 0.414964 | 2_2:+47243786 | None:intergenic |
| CCTTTCCTAACAGCTGAAAC+TGG | 0.418083 | 2_2:+47244606 | None:intergenic |
| CACTGAAGCATTAGCTGAAA+AGG | 0.418571 | 2_2:-47244099 | Msa0254320:intron |
| CGATCCGAGTCTATACCAAT+TGG | 0.433553 | 2_2:+47242936 | None:intergenic |
| AAAATTCTTGGAAGAGAATG+AGG | 0.435584 | 2_2:-47240209 | Msa0254320:CDS |
| TATTAAATTCTTTGAAGCAT+TGG | 0.436111 | 2_2:+47244757 | None:intergenic |
| TGGTAATTATAATAGTGATC+CGG | 0.437092 | 2_2:-47244952 | Msa0254320:CDS |
| ATGAAGAGGGAGATATTGTT+TGG | 0.437803 | 2_2:-47243754 | Msa0254320:CDS |
| TTTAACAGCAAAATGAAAGT+TGG | 0.437983 | 2_2:-47243686 | Msa0254320:CDS |
| GTCCTATGAATTTCAGAAGA+TGG | 0.441112 | 2_2:+47243641 | None:intergenic |
| CTTGCATGTCAGTTTCCAAT+TGG | 0.441982 | 2_2:-47242951 | Msa0254320:intron |
| GAATTTCAGAAGATGGAAAT+GGG | 0.443331 | 2_2:+47243648 | None:intergenic |
| TTAGGAAAGGCGAGGATACT+TGG | 0.444413 | 2_2:-47244593 | Msa0254320:CDS |
| TCGGGAACATCTGTTCTTGT+TGG | 0.449907 | 2_2:+47240148 | None:intergenic |
| TGAAGCGAGGTGGATAGGTT+GGG | 0.453162 | 2_2:-47244162 | Msa0254320:CDS |
| CGGTGTCAATGTGGCGGATG+CGG | 0.453973 | 2_2:-47244138 | Msa0254320:CDS |
| TTCAAAGAATTTAATAACTC+TGG | 0.455378 | 2_2:-47244750 | Msa0254320:CDS |
| CTAAGTCTTTGAATGGAGCT+TGG | 0.459614 | 2_2:+47242883 | None:intergenic |
| TTCCAGAGTGAACATATGCC+TGG | 0.460294 | 2_2:-47244987 | Msa0254320:CDS |
| ATTGTTCATCAGTACTATAA+TGG | 0.460975 | 2_2:-47243923 | Msa0254320:CDS |
| AGGCGAGGATACTTGGTCTC+TGG | 0.462609 | 2_2:-47244586 | Msa0254320:CDS |
| TTGAAGCGAGGTGGATAGGT+TGG | 0.466195 | 2_2:-47244163 | Msa0254320:CDS |
| CCAGAAGGGGTTGAGGATCA+AGG | 0.471812 | 2_2:-47243148 | Msa0254320:CDS |
| AAATTGATATTCAACTTCAA+TGG | 0.475514 | 2_2:-47245015 | Msa0254320:exon |
| GGACTTGAGGCCACGCCAGA+AGG | 0.476564 | 2_2:-47243163 | Msa0254320:CDS |
| AGAAAGATTTAAAGGCAGAA+AGG | 0.479289 | 2_2:-47242859 | Msa0254320:intron |
| TGATATTCAACTTCAATGGT+GGG | 0.482495 | 2_2:-47245011 | Msa0254320:exon |
| GGAGATCAGTGCTGGCGGCT+TGG | 0.485506 | 2_2:-47244565 | Msa0254320:CDS |
| GATACGAATCAAACTGAGAC+TGG | 0.490005 | 2_2:+47243819 | None:intergenic |
| TTAAATTTCTTTAAGCATTG+AGG | 0.493141 | 2_2:+47243704 | None:intergenic |
| AATGGATATGAAAGGGAAGA+TGG | 0.497447 | 2_2:-47244672 | Msa0254320:CDS |
| GAATTCCTTTAATCATATCA+AGG | 0.502541 | 2_2:+47240254 | None:intergenic |
| GGTAATTATAATAGTGATCC+GGG | 0.502786 | 2_2:-47244951 | Msa0254320:CDS |
| GAATGAGGATTGGCGAGAAA+AGG | 0.505063 | 2_2:-47240194 | Msa0254320:CDS |
| CAGAAGATGGAAATGGGGTA+TGG | 0.509576 | 2_2:+47243654 | None:intergenic |
| GGAAGGTGCCGCAGCAGCAA+AGG | 0.512611 | 2_2:-47244703 | Msa0254320:CDS |
| GACTTGAGGCCACGCCAGAA+GGG | 0.513844 | 2_2:-47243162 | Msa0254320:CDS |
| CTAGATTTATACAATGAAGA+TGG | 0.514117 | 2_2:+47240102 | None:intergenic |
| AATAGTGATCCGGGTCGTGT+TGG | 0.515868 | 2_2:-47244942 | Msa0254320:CDS |
| TTGATATTCAACTTCAATGG+TGG | 0.520446 | 2_2:-47245012 | Msa0254320:exon |
| GGCCACGCCAGAAGGGGTTG+AGG | 0.529309 | 2_2:-47243155 | Msa0254320:CDS |
| ATGCCTGGAAACAAGTGTAA+TGG | 0.529388 | 2_2:-47244972 | Msa0254320:CDS |
| ACAGCAAAATGAAAGTTGGT+TGG | 0.530544 | 2_2:-47243682 | Msa0254320:CDS |
| TTCCAGGCATATGTTCACTC+TGG | 0.531508 | 2_2:+47244985 | None:intergenic |
| TGTAAATCAGGTCTATGAAG+AGG | 0.532180 | 2_2:-47243768 | Msa0254320:CDS |
| GTCGCTAGACGATCTTCTTG+TGG | 0.532325 | 2_2:+47243854 | None:intergenic |
| CCAGTTTCAGCTGTTAGGAA+AGG | 0.533915 | 2_2:-47244606 | Msa0254320:CDS |
| ACTAAGAGCCTTTGCTGCTG+CGG | 0.538437 | 2_2:+47244695 | None:intergenic |
| TCTTAGTAATGGATATGAAA+GGG | 0.539030 | 2_2:-47244679 | Msa0254320:CDS |
| GGAGGCAAACCAAATGTTTG+CGG | 0.544266 | 2_2:-47243795 | Msa0254320:CDS |
| TGGTCTCTGGAGATCAGTGC+TGG | 0.544600 | 2_2:-47244573 | Msa0254320:CDS |
| TACTCGCATTCTTGGACTTG+AGG | 0.552286 | 2_2:-47243176 | Msa0254320:CDS |
| ATCCTCAACCCCTTCTGGCG+TGG | 0.552479 | 2_2:+47243153 | None:intergenic |
| TCTTGGAAGAGAATGAGGAT+TGG | 0.554535 | 2_2:-47240204 | Msa0254320:CDS |
| GATCGTCTAGCGACAACACG+TGG | 0.557259 | 2_2:-47243845 | Msa0254320:CDS |
| GTCAATGTGGCGGATGCGGT+TGG | 0.559432 | 2_2:-47244134 | Msa0254320:CDS |
| GCAGCAAAGGCTCTTAGTAA+TGG | 0.562025 | 2_2:-47244690 | Msa0254320:CDS |
| CTCTTAGTAATGGATATGAA+AGG | 0.562661 | 2_2:-47244680 | Msa0254320:CDS |
| GCGAGGTGGATAGGTTGGGC+CGG | 0.566610 | 2_2:-47244158 | Msa0254320:CDS |
| CGCATCCGCCACATTGACAC+CGG | 0.567778 | 2_2:+47244139 | None:intergenic |
| ATGGAGCTTGGACTTTAGGA+TGG | 0.572993 | 2_2:+47242895 | None:intergenic |
| GATATTCAACTTCAATGGTG+GGG | 0.579481 | 2_2:-47245010 | Msa0254320:exon |
| CAGAAGGGGTTGAGGATCAA+GGG | 0.582737 | 2_2:-47243147 | Msa0254320:CDS |
| CTTCCAGGAATCGTTCAACA+TGG | 0.586448 | 2_2:+47244721 | None:intergenic |
| ACTTGAGGCCACGCCAGAAG+GGG | 0.590289 | 2_2:-47243161 | Msa0254320:CDS |
| CATGTTGAACGATTCCTGGA+AGG | 0.590366 | 2_2:-47244720 | Msa0254320:CDS |
| GATCTTCTTGTGGAAGTCCA+AGG | 0.596055 | 2_2:+47243864 | None:intergenic |
| GTAAATCAGGTCTATGAAGA+GGG | 0.598355 | 2_2:-47243767 | Msa0254320:CDS |
| ACAAGTCGTCCAACACGACC+CGG | 0.600832 | 2_2:+47244933 | None:intergenic |
| GTTTCCAATTGGTATAGACT+CGG | 0.607049 | 2_2:-47242940 | Msa0254320:CDS |
| TCTCTTCAGTAAGAAATACT+GGG | 0.616418 | 2_2:+47243945 | None:intergenic |
| TCAGTTTGATTCGTATCAGG+AGG | 0.618280 | 2_2:-47243813 | Msa0254320:CDS |
| TTGGGCCGGTGTCAATGTGG+CGG | 0.618592 | 2_2:-47244144 | Msa0254320:CDS |
| CGCAAGAGTTCTGAACGAGA+TGG | 0.639238 | 2_2:+47243614 | None:intergenic |
| GAAACTGACTCGAGTTGCTG+CGG | 0.639800 | 2_2:-47243125 | Msa0254320:intron |
| GTATAAGTAGAACTTACACT+CGG | 0.645079 | 2_2:+47240129 | None:intergenic |
| AATTTCAGAAGATGGAAATG+GGG | 0.647741 | 2_2:+47243649 | None:intergenic |
| GTCGTGCATAATCATATGTG+TGG | 0.650384 | 2_2:+47243215 | None:intergenic |
| TTCCAGGAATCGTTCAACAT+GGG | 0.651644 | 2_2:+47244722 | None:intergenic |
| TTCAGCTGTTAGGAAAGGCG+AGG | 0.653116 | 2_2:-47244601 | Msa0254320:CDS |
| AGGTTGGGCCGGTGTCAATG+TGG | 0.661056 | 2_2:-47244147 | Msa0254320:CDS |
| TAATGATAGTGATAAACATG+TGG | 0.673104 | 2_2:-47244802 | Msa0254320:CDS |
| TATAAGTAGAACTTACACTC+GGG | 0.696504 | 2_2:+47240130 | None:intergenic |
| ATGGAAAACCTGTTAGACAA+CGG | 0.704226 | 2_2:-47244653 | Msa0254320:CDS |
| TCTCTGGAGATCAGTGCTGG+CGG | 0.731524 | 2_2:-47244570 | Msa0254320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAAAATATTAAA+AGG | + | chr2_2:47242680-47242699 | None:intergenic | 0.0% |
| !! | TAATAAGACAAAATATTATA+GGG | + | chr2_2:47244156-47244175 | None:intergenic | 10.0% |
| !! | TTAATAAGACAAAATATTAT+AGG | + | chr2_2:47244157-47244176 | None:intergenic | 10.0% |
| !! | ACTATTATTTGATAAAAATA+AGG | - | chr2_2:47244657-47244676 | Msa0254320:CDS | 10.0% |
| !!! | GGTCTTTTTTTTTAAATATT+TGG | - | chr2_2:47240637-47240656 | Msa0254320:intron | 15.0% |
| !! | TGTGATTAATAATCTTATTA+TGG | - | chr2_2:47242345-47242364 | Msa0254320:intron | 15.0% |
| !!! | CAATCTAATTTTAAATCAAA+AGG | + | chr2_2:47243292-47243311 | None:intergenic | 15.0% |
| !!! | TGTTTTTAATTGTATCATTA+GGG | + | chr2_2:47243544-47243563 | None:intergenic | 15.0% |
| !!! | ATGTTTTTAATTGTATCATT+AGG | + | chr2_2:47243545-47243564 | None:intergenic | 15.0% |
| !!! | TTTTTGAACAAGAAATTAAA+AGG | + | chr2_2:47243899-47243918 | None:intergenic | 15.0% |
| !! | TACCAATAATTATTTGTTTA+AGG | - | chr2_2:47244249-47244268 | Msa0254320:intron | 15.0% |
| !!! | ATTTTTATCAAATAATAGTG+TGG | + | chr2_2:47244656-47244675 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTAATCTTTTGTA+TGG | - | chr2_2:47244692-47244711 | Msa0254320:CDS | 15.0% |
| !! | AAATTGATATTCAACTTCAA+TGG | - | chr2_2:47240137-47240156 | Msa0254320:CDS | 20.0% |
| !!! | TATTAAATTCTTTGAAGCAT+TGG | + | chr2_2:47240398-47240417 | None:intergenic | 20.0% |
| !! | TTCAAAGAATTTAATAACTC+TGG | - | chr2_2:47240402-47240421 | Msa0254320:intron | 20.0% |
| !!! | TTGCATTTTGAAATGAATTT+GGG | - | chr2_2:47240756-47240775 | Msa0254320:intron | 20.0% |
| !!! | TTAAATTTCTTTAAGCATTG+AGG | + | chr2_2:47241451-47241470 | None:intergenic | 20.0% |
| !!! | AGTTTCATTCAAAACATTTT+AGG | + | chr2_2:47242115-47242134 | None:intergenic | 20.0% |
| !!! | TTTTGAATGAAACTTATCTT+AGG | - | chr2_2:47242121-47242140 | Msa0254320:intron | 20.0% |
| !! | GAAATAATCTCAAAATTCAT+AGG | + | chr2_2:47242386-47242405 | None:intergenic | 20.0% |
| !!! | CAATAGTATATTTTTTCAAG+TGG | + | chr2_2:47242735-47242754 | None:intergenic | 20.0% |
| !!! | AATATTAGTTCACACATTTT+TGG | - | chr2_2:47242896-47242915 | Msa0254320:CDS | 20.0% |
| !!! | ATTTATGTACTTGTTTTTAG+AGG | + | chr2_2:47243027-47243046 | None:intergenic | 20.0% |
| !!! | TCTATAATCTATGATTTGTA+GGG | + | chr2_2:47243229-47243248 | None:intergenic | 20.0% |
| !!! | ATCTATAATCTATGATTTGT+AGG | + | chr2_2:47243230-47243249 | None:intergenic | 20.0% |
| !! | TACAAATCATAGATTATAGA+TGG | - | chr2_2:47243229-47243248 | Msa0254320:intron | 20.0% |
| !! | ACAAATCATAGATTATAGAT+GGG | - | chr2_2:47243230-47243249 | Msa0254320:intron | 20.0% |
| !! | GAAAAGAAAGAAAGAAAAAA+AGG | - | chr2_2:47243315-47243334 | Msa0254320:intron | 20.0% |
| !! | AATTCAAAACAACTAATAAC+TGG | + | chr2_2:47243853-47243872 | None:intergenic | 20.0% |
| !! | TGTATAGATAAACAAATATC+AGG | + | chr2_2:47244201-47244220 | None:intergenic | 20.0% |
| !! | CACCTTAAACAAATAATTAT+TGG | + | chr2_2:47244254-47244273 | None:intergenic | 20.0% |
| !! | CTCAAATTTCTATGTTTATA+AGG | - | chr2_2:47244366-47244385 | Msa0254320:intron | 20.0% |
| !!! | TTTTCCAACTATTTATACAA+TGG | - | chr2_2:47244503-47244522 | Msa0254320:intron | 20.0% |
| !! | ATTATAGAACCAATTAAAGT+AGG | + | chr2_2:47244824-47244843 | None:intergenic | 20.0% |
| ! | TGGTAATTATAATAGTGATC+CGG | - | chr2_2:47240200-47240219 | Msa0254320:CDS | 25.0% |
| !! | TAATGATAGTGATAAACATG+TGG | - | chr2_2:47240350-47240369 | Msa0254320:intron | 25.0% |
| !!! | TCTTAGTAATGGATATGAAA+GGG | - | chr2_2:47240473-47240492 | Msa0254320:intron | 25.0% |
| ! | TGCATGAATTTAACTGTTAT+TGG | - | chr2_2:47240704-47240723 | Msa0254320:intron | 25.0% |
| !!! | TTAACTGTTATTGGTTTTTG+AGG | - | chr2_2:47240713-47240732 | Msa0254320:intron | 25.0% |
| !!! | GTTGCATTTTGAAATGAATT+TGG | - | chr2_2:47240755-47240774 | Msa0254320:intron | 25.0% |
| !!! | AGTTATTTCTAACATTGTGA+TGG | + | chr2_2:47241092-47241111 | None:intergenic | 25.0% |
| ! | ATTGTTCATCAGTACTATAA+TGG | - | chr2_2:47241229-47241248 | Msa0254320:intron | 25.0% |
| ! | TTTAACAGCAAAATGAAAGT+TGG | - | chr2_2:47241466-47241485 | Msa0254320:intron | 25.0% |
| !! | TTTCTGTACATTTGTTACAT+TGG | - | chr2_2:47241642-47241661 | Msa0254320:intron | 25.0% |
| !! | TTCTGTACATTTGTTACATT+GGG | - | chr2_2:47241643-47241662 | Msa0254320:intron | 25.0% |
| ! | CTATTAAGGACAAGATATAT+AGG | + | chr2_2:47241847-47241866 | None:intergenic | 25.0% |
| ! | AGAGAGTGAATAAACTATTA+AGG | + | chr2_2:47241861-47241880 | None:intergenic | 25.0% |
| !!! | TTTGAAAGTATCGATCATAA+AGG | + | chr2_2:47242072-47242091 | None:intergenic | 25.0% |
| ! | GACTTAGTAGAAAGATTTAA+AGG | - | chr2_2:47242285-47242304 | Msa0254320:intron | 25.0% |
| ! | TTTCCTGTTACAAATCATTA+GGG | - | chr2_2:47242425-47242444 | Msa0254320:intron | 25.0% |
| !!! | TTTAAAGTTTTCGAACAACT+CGG | - | chr2_2:47242570-47242589 | Msa0254320:intron | 25.0% |
| ! | TAGATTATAGATGGGAAATT+AGG | - | chr2_2:47243238-47243257 | Msa0254320:intron | 25.0% |
| ! | GTTATTTAACAACACTGTAA+CGG | + | chr2_2:47243358-47243377 | None:intergenic | 25.0% |
| !! | TTACAGTGTTGTTAAATAAC+TGG | - | chr2_2:47243358-47243377 | Msa0254320:intron | 25.0% |
| ! | AATGGTTATTGCTTACATAT+CGG | - | chr2_2:47243499-47243518 | Msa0254320:intron | 25.0% |
| !!! | TTCCTTTTAATTTCTGTTCT+TGG | - | chr2_2:47243920-47243939 | Msa0254320:CDS | 25.0% |
| ! | AACCAAGAACAGAAATTAAA+AGG | + | chr2_2:47243925-47243944 | None:intergenic | 25.0% |
| !!! | AGCAATGGTGTTATTAATAT+CGG | + | chr2_2:47244126-47244145 | None:intergenic | 25.0% |
| !! | CAAATAATTATTGGTAACTG+TGG | + | chr2_2:47244245-47244264 | None:intergenic | 25.0% |
| !! | TAGAAATTTGAGATCATAAC+AGG | + | chr2_2:47244358-47244377 | None:intergenic | 25.0% |
| ! | AAGACCATTGTATAAATAGT+TGG | + | chr2_2:47244510-47244529 | None:intergenic | 25.0% |
| ! | AAAACACAAATACAACTTCT+AGG | + | chr2_2:47244780-47244799 | None:intergenic | 25.0% |
| !!! | AACATTTTTTCTTGATTGAC+AGG | - | chr2_2:47244856-47244875 | Msa0254320:CDS | 25.0% |
| ! | GAATTCCTTTAATCATATCA+AGG | + | chr2_2:47244901-47244920 | None:intergenic | 25.0% |
| !!! | TCTTGCTTTTGAAAAATTCT+TGG | - | chr2_2:47244931-47244950 | Msa0254320:CDS | 25.0% |
| TTGATATTCAACTTCAATGG+TGG | - | chr2_2:47240140-47240159 | Msa0254320:CDS | 30.0% | |
| TGATATTCAACTTCAATGGT+GGG | - | chr2_2:47240141-47240160 | Msa0254320:CDS | 30.0% | |
| GGTAATTATAATAGTGATCC+GGG | - | chr2_2:47240201-47240220 | Msa0254320:CDS | 30.0% | |
| !! | CTCTTAGTAATGGATATGAA+AGG | - | chr2_2:47240472-47240491 | Msa0254320:intron | 30.0% |
| ATCAGACAATACACTAAAAC+TGG | + | chr2_2:47240676-47240695 | None:intergenic | 30.0% | |
| !!! | TGTTATTGGTTTTTGAGGAT+GGG | - | chr2_2:47240718-47240737 | Msa0254320:intron | 30.0% |
| TACATTCTGTAGCAATATCA+TGG | - | chr2_2:47240845-47240864 | Msa0254320:intron | 30.0% | |
| ! | TGTAATTTGGAACCATGATT+TGG | - | chr2_2:47240905-47240924 | Msa0254320:intron | 30.0% |
| ! | GGTTACATAGAGTTTTCTAA+CGG | - | chr2_2:47240934-47240953 | Msa0254320:intron | 30.0% |
| ! | GTTACATAGAGTTTTCTAAC+GGG | - | chr2_2:47240935-47240954 | Msa0254320:intron | 30.0% |
| ! | TTACATAGAGTTTTCTAACG+GGG | - | chr2_2:47240936-47240955 | Msa0254320:intron | 30.0% |
| ! | ATTCTTTTGTATAGGTGTGA+AGG | - | chr2_2:47240963-47240982 | Msa0254320:intron | 30.0% |
| TCTCTTCAGTAAGAAATACT+GGG | + | chr2_2:47241210-47241229 | None:intergenic | 30.0% | |
| ATCTCTTCAGTAAGAAATAC+TGG | + | chr2_2:47241211-47241230 | None:intergenic | 30.0% | |
| ! | GCTATTGCAATAACATTTTG+TGG | - | chr2_2:47241251-47241270 | Msa0254320:intron | 30.0% |
| AAGTCCAAGGTAATGAAAAA+GGG | + | chr2_2:47241278-47241297 | None:intergenic | 30.0% | |
| AATTTCAGAAGATGGAAATG+GGG | + | chr2_2:47241506-47241525 | None:intergenic | 30.0% | |
| GAATTTCAGAAGATGGAAAT+GGG | + | chr2_2:47241507-47241526 | None:intergenic | 30.0% | |
| TGAATTTCAGAAGATGGAAA+TGG | + | chr2_2:47241508-47241527 | None:intergenic | 30.0% | |
| !! | TTCCATCTTCTGAAATTCAT+AGG | - | chr2_2:47241509-47241528 | Msa0254320:intron | 30.0% |
| TGTACAGAAAATAGAGTTTG+AGG | + | chr2_2:47241632-47241651 | None:intergenic | 30.0% | |
| ! | TCTGTACATTTGTTACATTG+GGG | - | chr2_2:47241644-47241663 | Msa0254320:intron | 30.0% |
| ATTGTGCATTCTTAATCTTG+AGG | - | chr2_2:47241733-47241752 | Msa0254320:intron | 30.0% | |
| TTGTGCATTCTTAATCTTGA+GGG | - | chr2_2:47241734-47241753 | Msa0254320:intron | 30.0% | |
| ATAACGAATGAATTCACGAT+TGG | - | chr2_2:47241787-47241806 | Msa0254320:intron | 30.0% | |
| CTTTCTACTAAGTCTTTGAA+TGG | + | chr2_2:47242279-47242298 | None:intergenic | 30.0% | |
| AGAAAGATTTAAAGGCAGAA+AGG | - | chr2_2:47242293-47242312 | Msa0254320:intron | 30.0% | |
| AGCAGTTAATACAGAGTAAA+AGG | + | chr2_2:47242323-47242342 | None:intergenic | 30.0% | |
| CTTTCCTGTTACAAATCATT+AGG | - | chr2_2:47242424-47242443 | Msa0254320:intron | 30.0% | |
| !!! | CCTTTTTTTTAACTCGAGTT+CGG | - | chr2_2:47242543-47242562 | Msa0254320:intron | 30.0% |
| TACTACTGTAGCAATACATA+AGG | - | chr2_2:47242769-47242788 | Msa0254320:intron | 30.0% | |
| GTTGAAAAACATTAGATAGG+CGG | + | chr2_2:47242860-47242879 | None:intergenic | 30.0% | |
| GGAGTTGAAAAACATTAGAT+AGG | + | chr2_2:47242863-47242882 | None:intergenic | 30.0% | |
| AACTAATATTAGTCCCACAT+CGG | + | chr2_2:47242886-47242905 | None:intergenic | 30.0% | |
| CTAATAACATACTCTTGTGT+AGG | + | chr2_2:47242929-47242948 | None:intergenic | 30.0% | |
| GAACTGTATATAGTTCGATT+CGG | + | chr2_2:47243072-47243091 | None:intergenic | 30.0% | |
| GATAATTAACTCGTTGAACT+TGG | + | chr2_2:47243160-47243179 | None:intergenic | 30.0% | |
| ! | TCTTTTCCACTAGAGAAAAT+TGG | - | chr2_2:47243264-47243283 | Msa0254320:intron | 30.0% |
| AGAAAGAAAAAAAGGCTTCA+AGG | - | chr2_2:47243323-47243342 | Msa0254320:intron | 30.0% | |
| ! | TTTTTGCATATCGGTGATAA+TGG | - | chr2_2:47243481-47243500 | Msa0254320:intron | 30.0% |
| GGATTCATTGAAAAAGTTGA+AGG | - | chr2_2:47243735-47243754 | Msa0254320:CDS | 30.0% | |
| TATGAGGATAATGATTATGC+TGG | - | chr2_2:47243776-47243795 | Msa0254320:CDS | 30.0% | |
| ATGAGGATAATGATTATGCT+GGG | - | chr2_2:47243777-47243796 | Msa0254320:CDS | 30.0% | |
| !! | TGTTTATATCAACCGATTTG+CGG | - | chr2_2:47244025-47244044 | Msa0254320:intron | 30.0% |
| AATAGCAAAAATCCGCAAAT+CGG | + | chr2_2:47244040-47244059 | None:intergenic | 30.0% | |
| !!! | TATTTCTCTTAGCGGATTTT+TGG | - | chr2_2:47244079-47244098 | Msa0254320:intron | 30.0% |
| ! | GTGTTATTAATATCGGATCA+TGG | + | chr2_2:47244119-47244138 | None:intergenic | 30.0% |
| GATATTAATAACACCATTGC+TGG | - | chr2_2:47244125-47244144 | Msa0254320:CDS | 30.0% | |
| ! | TGTCTTATTAAACATGCGAA+AGG | - | chr2_2:47244166-47244185 | Msa0254320:CDS | 30.0% |
| GGTATAGTATATTAACTGTG+AGG | + | chr2_2:47244224-47244243 | None:intergenic | 30.0% | |
| ! | ATGAGTGACTTATAAGTTGA+AGG | + | chr2_2:47244283-47244302 | None:intergenic | 30.0% |
| TCAACTTATAAGTCACTCAT+AGG | - | chr2_2:47244283-47244302 | Msa0254320:intron | 30.0% | |
| CAGGTAAAAATCACAATATG+TGG | + | chr2_2:47244339-47244358 | None:intergenic | 30.0% | |
| TAACATGATAAAGACTCTAC+AGG | + | chr2_2:47244400-47244419 | None:intergenic | 30.0% | |
| !! | ATGTGCTTTTTGTCAGAAAA+AGG | + | chr2_2:47244484-47244503 | None:intergenic | 30.0% |
| !! | TATACAATGGTCTTGTGTAA+TGG | - | chr2_2:47244516-47244535 | Msa0254320:intron | 30.0% |
| TAGTCTAATGGAAAGAAGTA+GGG | + | chr2_2:47244560-47244579 | None:intergenic | 30.0% | |
| ATAGTCTAATGGAAAGAAGT+AGG | + | chr2_2:47244561-47244580 | None:intergenic | 30.0% | |
| TGAAATGGAAGATAGTCTAA+TGG | + | chr2_2:47244572-47244591 | None:intergenic | 30.0% | |
| GAACCAATTAAAGTAGGATT+TGG | + | chr2_2:47244818-47244837 | None:intergenic | 30.0% | |
| ! | TCAAAAGCAAGAAGTTTTTG+AGG | + | chr2_2:47244923-47244942 | None:intergenic | 30.0% |
| AAAATTCTTGGAAGAGAATG+AGG | - | chr2_2:47244943-47244962 | Msa0254320:CDS | 30.0% | |
| TATAAGTAGAACTTACACTC+GGG | + | chr2_2:47245025-47245044 | None:intergenic | 30.0% | |
| GTATAAGTAGAACTTACACT+CGG | + | chr2_2:47245026-47245045 | None:intergenic | 30.0% | |
| GATATTCAACTTCAATGGTG+GGG | - | chr2_2:47240142-47240161 | Msa0254320:CDS | 35.0% | |
| TTACCATTACACTTGTTTCC+AGG | + | chr2_2:47240186-47240205 | None:intergenic | 35.0% | |
| AGAACAGATAAAAAGCAGCA+GGG | - | chr2_2:47240251-47240270 | Msa0254320:CDS | 35.0% | |
| AATGGATATGAAAGGGAAGA+TGG | - | chr2_2:47240480-47240499 | Msa0254320:intron | 35.0% | |
| ATGGAAAACCTGTTAGACAA+CGG | - | chr2_2:47240499-47240518 | Msa0254320:intron | 35.0% | |
| !!! | CTGTTATTGGTTTTTGAGGA+TGG | - | chr2_2:47240717-47240736 | Msa0254320:intron | 35.0% |
| TTGAAATGAATTTGGGCCAT+CGG | - | chr2_2:47240763-47240782 | Msa0254320:intron | 35.0% | |
| ! | AAACCACAATTTTAGACCGA+TGG | + | chr2_2:47240782-47240801 | None:intergenic | 35.0% |
| ! | GTCTAAAATTGTGGTTTGCA+AGG | - | chr2_2:47240785-47240804 | Msa0254320:intron | 35.0% |
| CTACAGAATGTAGACTAATG+TGG | + | chr2_2:47240837-47240856 | None:intergenic | 35.0% | |
| GAAAACTCTATGTAACCTAG+CGG | + | chr2_2:47240931-47240950 | None:intergenic | 35.0% | |
| ! | GCTTTTTACTTGTGTTACAG+AGG | - | chr2_2:47241179-47241198 | Msa0254320:intron | 35.0% |
| AGTCCAAGGTAATGAAAAAG+GGG | + | chr2_2:47241277-47241296 | None:intergenic | 35.0% | |
| GAAGTCCAAGGTAATGAAAA+AGG | + | chr2_2:47241279-47241298 | None:intergenic | 35.0% | |
| TTACAACATCCGCAAACATT+TGG | + | chr2_2:47241369-47241388 | None:intergenic | 35.0% | |
| TGTAAATCAGGTCTATGAAG+AGG | - | chr2_2:47241384-47241403 | Msa0254320:intron | 35.0% | |
| GTAAATCAGGTCTATGAAGA+GGG | - | chr2_2:47241385-47241404 | Msa0254320:intron | 35.0% | |
| ATGAAGAGGGAGATATTGTT+TGG | - | chr2_2:47241398-47241417 | Msa0254320:intron | 35.0% | |
| ! | ACAGCAAAATGAAAGTTGGT+TGG | - | chr2_2:47241470-47241489 | Msa0254320:intron | 35.0% |
| GTCCTATGAATTTCAGAAGA+TGG | + | chr2_2:47241514-47241533 | None:intergenic | 35.0% | |
| ! | TGCAATTTGACTCTGCATTT+TGG | - | chr2_2:47241594-47241613 | Msa0254320:intron | 35.0% |
| ! | GCAATTTGACTCTGCATTTT+GGG | - | chr2_2:47241595-47241614 | Msa0254320:intron | 35.0% |
| ! | CTGTACATTTGTTACATTGG+GGG | - | chr2_2:47241645-47241664 | Msa0254320:intron | 35.0% |
| TTGATCTAAGTCAGAAGCAA+TGG | + | chr2_2:47241891-47241910 | None:intergenic | 35.0% | |
| GTTTCCAATTGGTATAGACT+CGG | - | chr2_2:47242212-47242231 | Msa0254320:intron | 35.0% | |
| CCGAACTCGAGTTAAAAAAA+AGG | + | chr2_2:47242546-47242565 | None:intergenic | 35.0% | |
| GTAGCACAATATGTATATGC+AGG | - | chr2_2:47242813-47242832 | Msa0254320:intron | 35.0% | |
| ACTAATATTAGTCCCACATC+GGG | + | chr2_2:47242885-47242904 | None:intergenic | 35.0% | |
| !! | TGTATATAGTTCGATTCGGT+TGG | + | chr2_2:47243068-47243087 | None:intergenic | 35.0% |
| ! | TAATCTATGATTTGTAGGGC+TGG | + | chr2_2:47243225-47243244 | None:intergenic | 35.0% |
| ! | AAGGAACCAATTTTCTCTAG+TGG | + | chr2_2:47243273-47243292 | None:intergenic | 35.0% |
| CAAATCCTGATAGGTAATAG+CGG | + | chr2_2:47243399-47243418 | None:intergenic | 35.0% | |
| ! | AGCGGTTTCTTTTTGCATAT+CGG | - | chr2_2:47243472-47243491 | Msa0254320:intron | 35.0% |
| TGAGGATAATGATTATGCTG+GGG | - | chr2_2:47243778-47243797 | Msa0254320:CDS | 35.0% | |
| AAATCCGCTAAGAGAAATAG+CGG | + | chr2_2:47244078-47244097 | None:intergenic | 35.0% | |
| TATCGGATCATGGAAAATAG+CGG | + | chr2_2:47244109-47244128 | None:intergenic | 35.0% | |
| CCTCCAAAACAAACTTAACT+GGG | + | chr2_2:47244309-47244328 | None:intergenic | 35.0% | |
| ! | AAAAAAGCCTTATCTACACG+AGG | - | chr2_2:47244435-47244454 | Msa0254320:intron | 35.0% |
| AGTCTAATGGAAAGAAGTAG+GGG | + | chr2_2:47244559-47244578 | None:intergenic | 35.0% | |
| ! | CATTTCATCCAATTTTCTGC+CGG | - | chr2_2:47244585-47244604 | Msa0254320:CDS | 35.0% |
| ! | ATTTCATCCAATTTTCTGCC+GGG | - | chr2_2:47244586-47244605 | Msa0254320:CDS | 35.0% |
| !! | TTAAAGTAGGATTTGGCTCT+AGG | + | chr2_2:47244811-47244830 | None:intergenic | 35.0% |
| GAGCCAAATCCTACTTTAAT+TGG | - | chr2_2:47244812-47244831 | Msa0254320:CDS | 35.0% | |
| CTTGATTGACAGGTAATGTT+AGG | - | chr2_2:47244866-47244885 | Msa0254320:CDS | 35.0% | |
| GATCGCCTTGATATGATTAA+AGG | - | chr2_2:47244893-47244912 | Msa0254320:CDS | 35.0% | |
| ATGCCTGGAAACAAGTGTAA+TGG | - | chr2_2:47240180-47240199 | Msa0254320:CDS | 40.0% | |
| GAGAACAGATAAAAAGCAGC+AGG | - | chr2_2:47240250-47240269 | Msa0254320:CDS | 40.0% | |
| TTCCAGGAATCGTTCAACAT+GGG | + | chr2_2:47240433-47240452 | None:intergenic | 40.0% | |
| CTGTGATCGCAACTGTAATT+TGG | - | chr2_2:47240892-47240911 | Msa0254320:intron | 40.0% | |
| ! | CACTGAAGCATTAGCTGAAA+AGG | - | chr2_2:47241053-47241072 | Msa0254320:intron | 40.0% |
| GATACGAATCAAACTGAGAC+TGG | + | chr2_2:47241336-47241355 | None:intergenic | 40.0% | |
| ! | GTCTCAGTTTGATTCGTATC+AGG | - | chr2_2:47241336-47241355 | Msa0254320:intron | 40.0% |
| ! | TCAGTTTGATTCGTATCAGG+AGG | - | chr2_2:47241339-47241358 | Msa0254320:intron | 40.0% |
| GTTTGCGGATGTTGTAAATC+AGG | - | chr2_2:47241372-47241391 | Msa0254320:intron | 40.0% | |
| !! | TTCTTGCTGCTGATTTGGTT+GGG | - | chr2_2:47241566-47241585 | Msa0254320:intron | 40.0% |
| TGTTATACCCCCAGATGATT+TGG | - | chr2_2:47241701-47241720 | Msa0254320:intron | 40.0% | |
| GTTATACCCCCAGATGATTT+GGG | - | chr2_2:47241702-47241721 | Msa0254320:intron | 40.0% | |
| TTCCCTTTCCCAAATCATCT+GGG | + | chr2_2:47241713-47241732 | None:intergenic | 40.0% | |
| TTTCCCTTTCCCAAATCATC+TGG | + | chr2_2:47241714-47241733 | None:intergenic | 40.0% | |
| ACAACGCTGAACTAGTGTTA+TGG | + | chr2_2:47241819-47241838 | None:intergenic | 40.0% | |
| GTCGTGCATAATCATATGTG+TGG | + | chr2_2:47241940-47241959 | None:intergenic | 40.0% | |
| CTTGCATGTCAGTTTCCAAT+TGG | - | chr2_2:47242201-47242220 | Msa0254320:intron | 40.0% | |
| TTGAATGGAGCTTGGACTTT+AGG | + | chr2_2:47242264-47242283 | None:intergenic | 40.0% | |
| CTAAGTCTTTGAATGGAGCT+TGG | + | chr2_2:47242272-47242291 | None:intergenic | 40.0% | |
| ! | CAGCCCTAATGATTTGTAAC+AGG | + | chr2_2:47242431-47242450 | None:intergenic | 40.0% |
| CTGTTACAAATCATTAGGGC+TGG | - | chr2_2:47242429-47242448 | Msa0254320:intron | 40.0% | |
| ! | AGTTTTCGAACAACTCGGTT+CGG | - | chr2_2:47242575-47242594 | Msa0254320:intron | 40.0% |
| CTAATATTAGTCCCACATCG+GGG | + | chr2_2:47242884-47242903 | None:intergenic | 40.0% | |
| ATTCCGAACTATTGTCGAGT+TGG | - | chr2_2:47243187-47243206 | Msa0254320:CDS | 40.0% | |
| GAACCAACTCGACAATAGTT+CGG | + | chr2_2:47243193-47243212 | None:intergenic | 40.0% | |
| !! | GAACTATTGTCGAGTTGGTT+CGG | - | chr2_2:47243192-47243211 | Msa0254320:CDS | 40.0% |
| GATAGGTAATAGCGGTATAG+CGG | + | chr2_2:47243391-47243410 | None:intergenic | 40.0% | |
| CTATACCGCTATTACCTATC+AGG | - | chr2_2:47243391-47243410 | Msa0254320:intron | 40.0% | |
| CGCTATTACCTATCAGGATT+TGG | - | chr2_2:47243397-47243416 | Msa0254320:intron | 40.0% | |
| TTCCGCTAACACTTCAATAG+CGG | - | chr2_2:47243454-47243473 | Msa0254320:intron | 40.0% | |
| ! | AACCGCTATTGAAGTGTTAG+CGG | + | chr2_2:47243459-47243478 | None:intergenic | 40.0% |
| TGAGAGGTTACCTATGTTGT+GGG | + | chr2_2:47243660-47243679 | None:intergenic | 40.0% | |
| ATGAGAGGTTACCTATGTTG+TGG | + | chr2_2:47243661-47243680 | None:intergenic | 40.0% | |
| CAATGTCTTGAAGGACATGA+AGG | + | chr2_2:47243708-47243727 | None:intergenic | 40.0% | |
| TATCCTCATACTAGATCGTG+AGG | + | chr2_2:47243766-47243785 | None:intergenic | 40.0% | |
| !! | AGAAATAGCGGATAGCATAG+CGG | + | chr2_2:47244066-47244085 | None:intergenic | 40.0% |
| !! | CTATCCGCTATTTCTCTTAG+CGG | - | chr2_2:47244071-47244090 | Msa0254320:intron | 40.0% |
| TTATAGGGATGATCCAGCAA+TGG | + | chr2_2:47244141-47244160 | None:intergenic | 40.0% | |
| !! | AGGCCCAGTTAAGTTTGTTT+TGG | - | chr2_2:47244303-47244322 | Msa0254320:intron | 40.0% |
| !!! | CCCAGTTAAGTTTGTTTTGG+AGG | - | chr2_2:47244306-47244325 | Msa0254320:intron | 40.0% |
| GCCTCCAAAACAAACTTAAC+TGG | + | chr2_2:47244310-47244329 | None:intergenic | 40.0% | |
| AAGTTGACCTCGTGTAGATA+AGG | + | chr2_2:47244445-47244464 | None:intergenic | 40.0% | |
| CGGCAGAAAATTGGATGAAA+TGG | + | chr2_2:47244587-47244606 | None:intergenic | 40.0% | |
| AGAAGAAGATCAACAGACAG+AGG | + | chr2_2:47244614-47244633 | None:intergenic | 40.0% | |
| ! | AGCGAACAAGGCATTAATAC+AGG | - | chr2_2:47244734-47244753 | Msa0254320:CDS | 40.0% |
| TCTTGGAAGAGAATGAGGAT+TGG | - | chr2_2:47244948-47244967 | Msa0254320:CDS | 40.0% | |
| TTCCAGAGTGAACATATGCC+TGG | - | chr2_2:47240165-47240184 | Msa0254320:CDS | 45.0% | |
| TTCCAGGCATATGTTCACTC+TGG | + | chr2_2:47240170-47240189 | None:intergenic | 45.0% | |
| TTCCCATGTTGAACGATTCC+TGG | - | chr2_2:47240428-47240447 | Msa0254320:intron | 45.0% | |
| CTTCCAGGAATCGTTCAACA+TGG | + | chr2_2:47240434-47240453 | None:intergenic | 45.0% | |
| CATGTTGAACGATTCCTGGA+AGG | - | chr2_2:47240432-47240451 | Msa0254320:intron | 45.0% | |
| GCAGCAAAGGCTCTTAGTAA+TGG | - | chr2_2:47240462-47240481 | Msa0254320:intron | 45.0% | |
| ! | ACCTGTTAGACAACGGCTTT+TGG | - | chr2_2:47240506-47240525 | Msa0254320:intron | 45.0% |
| ACCAAAAGCCGTTGTCTAAC+AGG | + | chr2_2:47240510-47240529 | None:intergenic | 45.0% | |
| !! | TAGACAACGGCTTTTGGTTG+TGG | - | chr2_2:47240512-47240531 | Msa0254320:intron | 45.0% |
| GATTGCCAGTTTCAGCTGTT+AGG | - | chr2_2:47240541-47240560 | Msa0254320:intron | 45.0% | |
| CCTTTCCTAACAGCTGAAAC+TGG | + | chr2_2:47240549-47240568 | None:intergenic | 45.0% | |
| CCAGTTTCAGCTGTTAGGAA+AGG | - | chr2_2:47240546-47240565 | Msa0254320:intron | 45.0% | |
| TTAGGAAAGGCGAGGATACT+TGG | - | chr2_2:47240559-47240578 | Msa0254320:intron | 45.0% | |
| !! | TCAGCGCTCTTTTAGGTATG+CGG | - | chr2_2:47240610-47240629 | Msa0254320:intron | 45.0% |
| ! | GGGGCTGCATTCTTTTGTAT+AGG | - | chr2_2:47240955-47240974 | Msa0254320:intron | 45.0% |
| !!! | GTGTGAAGGATTTTGAAGCG+AGG | - | chr2_2:47240977-47240996 | Msa0254320:intron | 45.0% |
| !!! | TGAAGGATTTTGAAGCGAGG+TGG | - | chr2_2:47240980-47240999 | Msa0254320:intron | 45.0% |
| !!! | GATTTTGAAGCGAGGTGGAT+AGG | - | chr2_2:47240985-47241004 | Msa0254320:intron | 45.0% |
| !! | TGGCCCCTTTTTCATTACCT+TGG | - | chr2_2:47241271-47241290 | Msa0254320:intron | 45.0% |
| GATCTTCTTGTGGAAGTCCA+AGG | + | chr2_2:47241291-47241310 | None:intergenic | 45.0% | |
| GGAGGCAAACCAAATGTTTG+CGG | - | chr2_2:47241357-47241376 | Msa0254320:intron | 45.0% | |
| CAGAAGATGGAAATGGGGTA+TGG | + | chr2_2:47241501-47241520 | None:intergenic | 45.0% | |
| ! | TGCAGTTCTTGCTGCTGATT+TGG | - | chr2_2:47241561-47241580 | Msa0254320:intron | 45.0% |
| !! | GTTCTTGCTGCTGATTTGGT+TGG | - | chr2_2:47241565-47241584 | Msa0254320:intron | 45.0% |
| TCCCTTTCCCAAATCATCTG+GGG | + | chr2_2:47241712-47241731 | None:intergenic | 45.0% | |
| TACTCGCATTCTTGGACTTG+AGG | - | chr2_2:47241976-47241995 | Msa0254320:intron | 45.0% | |
| CGATCCGAGTCTATACCAAT+TGG | + | chr2_2:47242219-47242238 | None:intergenic | 45.0% | |
| ! | ATGGAGCTTGGACTTTAGGA+TGG | + | chr2_2:47242260-47242279 | None:intergenic | 45.0% |
| ! | CGACTCGACTCGATAAGAAT+TGG | - | chr2_2:47242486-47242505 | Msa0254320:intron | 45.0% |
| CGACTCGATAAGAATTGGCT+CGG | - | chr2_2:47242491-47242510 | Msa0254320:intron | 45.0% | |
| !! | TGTTTTTCAACTCCCCGATG+TGG | - | chr2_2:47242869-47242888 | Msa0254320:CDS | 45.0% |
| !! | GTTTTTCAACTCCCCGATGT+GGG | - | chr2_2:47242870-47242889 | Msa0254320:CDS | 45.0% |
| CAGCTTGAGTTCAGCTCATT+TGG | - | chr2_2:47243126-47243145 | Msa0254320:CDS | 45.0% | |
| CAGTTGCTCCAAATCCTGAT+AGG | + | chr2_2:47243408-47243427 | None:intergenic | 45.0% | |
| ATGCTGAGTCGATCATGAGA+TGG | - | chr2_2:47243613-47243632 | Msa0254320:CDS | 45.0% | |
| TGCTGAGTCGATCATGAGAT+GGG | - | chr2_2:47243614-47243633 | Msa0254320:CDS | 45.0% | |
| ACCTCTAAACCCCACAACAT+AGG | - | chr2_2:47243647-47243666 | Msa0254320:CDS | 45.0% | |
| ACCTATGTTGTGGGGTTTAG+AGG | + | chr2_2:47243651-47243670 | None:intergenic | 45.0% | |
| GAGAGGTTACCTATGTTGTG+GGG | + | chr2_2:47243659-47243678 | None:intergenic | 45.0% | |
| ACAGGCAGTTTAGTGATGAG+AGG | + | chr2_2:47243676-47243695 | None:intergenic | 45.0% | |
| TGTCTTGAAGGACATGAAGG+TGG | + | chr2_2:47243705-47243724 | None:intergenic | 45.0% | |
| CCTGAGAGTCAATGTCTTGA+AGG | + | chr2_2:47243717-47243736 | None:intergenic | 45.0% | |
| !! | CCTTCAAGACATTGACTCTC+AGG | - | chr2_2:47243714-47243733 | Msa0254320:CDS | 45.0% |
| ATGCCTCACGATCTAGTATG+AGG | - | chr2_2:47243760-47243779 | Msa0254320:CDS | 45.0% | |
| !! | GAAATAGCGGATAGCATAGC+GGG | + | chr2_2:47244065-47244084 | None:intergenic | 45.0% |
| TTCCACTCTTTCAGCGAACA+AGG | - | chr2_2:47244722-47244741 | Msa0254320:CDS | 45.0% | |
| ! | GAATGAGGATTGGCGAGAAA+AGG | - | chr2_2:47244958-47244977 | Msa0254320:CDS | 45.0% |
| TCGGGAACATCTGTTCTTGT+TGG | + | chr2_2:47245007-47245026 | None:intergenic | 45.0% | |
| AATAGTGATCCGGGTCGTGT+TGG | - | chr2_2:47240210-47240229 | Msa0254320:CDS | 50.0% | |
| ACTAAGAGCCTTTGCTGCTG+CGG | + | chr2_2:47240460-47240479 | None:intergenic | 50.0% | |
| TTCAGCTGTTAGGAAAGGCG+AGG | - | chr2_2:47240551-47240570 | Msa0254320:intron | 50.0% | |
| !! | CTCTTTTAGGTATGCGGCGA+TGG | - | chr2_2:47240616-47240635 | Msa0254320:intron | 50.0% |
| ! | GGGCCATCGGTCTAAAATTG+TGG | - | chr2_2:47240776-47240795 | Msa0254320:intron | 50.0% |
| GGTTTGCAAGGTCTCTGCAA+TGG | - | chr2_2:47240797-47240816 | Msa0254320:intron | 50.0% | |
| GTAACCTAGCGGCCAAATCA+TGG | + | chr2_2:47240920-47240939 | None:intergenic | 50.0% | |
| TTGAAGCGAGGTGGATAGGT+TGG | - | chr2_2:47240989-47241008 | Msa0254320:intron | 50.0% | |
| TGAAGCGAGGTGGATAGGTT+GGG | - | chr2_2:47240990-47241009 | Msa0254320:intron | 50.0% | |
| GTCGCTAGACGATCTTCTTG+TGG | + | chr2_2:47241301-47241320 | None:intergenic | 50.0% | |
| !! | CGCAAGAGTTCTGAACGAGA+TGG | + | chr2_2:47241541-47241560 | None:intergenic | 50.0% |
| ! | ACCCCCAGATGATTTGGGAA+AGG | - | chr2_2:47241707-47241726 | Msa0254320:intron | 50.0% |
| CCCTTTCCCAAATCATCTGG+GGG | + | chr2_2:47241711-47241730 | None:intergenic | 50.0% | |
| ! | CCCCCAGATGATTTGGGAAA+GGG | - | chr2_2:47241708-47241727 | Msa0254320:intron | 50.0% |
| AGTGCGTGTACTCGCATTCT+TGG | - | chr2_2:47241968-47241987 | Msa0254320:intron | 50.0% | |
| CAGAAGGGGTTGAGGATCAA+GGG | - | chr2_2:47242005-47242024 | Msa0254320:intron | 50.0% | |
| !! | GAAACTGACTCGAGTTGCTG+CGG | - | chr2_2:47242027-47242046 | Msa0254320:intron | 50.0% |
| CAACACTGTAACGGTCGTCT+TGG | + | chr2_2:47243349-47243368 | None:intergenic | 50.0% | |
| GCTGAGTCGATCATGAGATG+GGG | - | chr2_2:47243615-47243634 | Msa0254320:CDS | 50.0% | |
| ACATGAAGGTGGAGAGACAC+AGG | + | chr2_2:47243694-47243713 | None:intergenic | 50.0% | |
| ! | TGCCTTGTTCGCTGAAAGAG+TGG | + | chr2_2:47244727-47244746 | None:intergenic | 50.0% |
| !! | TAGGATTTGGCTCTAGGCAG+AGG | + | chr2_2:47244805-47244824 | None:intergenic | 50.0% |
| ACAAGTCGTCCAACACGACC+CGG | + | chr2_2:47240222-47240241 | None:intergenic | 55.0% | |
| AGGCGAGGATACTTGGTCTC+TGG | - | chr2_2:47240566-47240585 | Msa0254320:intron | 55.0% | |
| ! | TGGTCTCTGGAGATCAGTGC+TGG | - | chr2_2:47240579-47240598 | Msa0254320:intron | 55.0% |
| ! | TCTCTGGAGATCAGTGCTGG+CGG | - | chr2_2:47240582-47240601 | Msa0254320:intron | 55.0% |
| !! | GGCTTGGTCAGCGCTCTTTT+AGG | - | chr2_2:47240603-47240622 | Msa0254320:intron | 55.0% |
| ! | GGAACCATGATTTGGCCGCT+AGG | - | chr2_2:47240913-47240932 | Msa0254320:intron | 55.0% |
| GATCGTCTAGCGACAACACG+TGG | - | chr2_2:47241307-47241326 | Msa0254320:intron | 55.0% | |
| CCTTGATCCTCAACCCCTTC+TGG | + | chr2_2:47242007-47242026 | None:intergenic | 55.0% | |
| CCAGAAGGGGTTGAGGATCA+AGG | - | chr2_2:47242004-47242023 | Msa0254320:intron | 55.0% | |
| ! | ACTCGAGTTGCTGCGGTATG+TGG | - | chr2_2:47242034-47242053 | Msa0254320:intron | 55.0% |
| !! | ACAACTCGGTTCGGCTCGTT+AGG | - | chr2_2:47242584-47242603 | Msa0254320:intron | 55.0% |
| ! | GGTTCAGCTCGTTTTGCTCG+AGG | - | chr2_2:47242605-47242624 | Msa0254320:intron | 55.0% |
| AGAGGCTCCCGGCAGAAAAT+TGG | + | chr2_2:47244596-47244615 | None:intergenic | 55.0% | |
| GATCAACAGACAGAGGCTCC+CGG | + | chr2_2:47244607-47244626 | None:intergenic | 55.0% | |
| ! | AGGTTGGGCCGGTGTCAATG+TGG | - | chr2_2:47241005-47241024 | Msa0254320:intron | 60.0% |
| ! | TTGGGCCGGTGTCAATGTGG+CGG | - | chr2_2:47241008-47241027 | Msa0254320:intron | 60.0% |
| CGCATCCGCCACATTGACAC+CGG | + | chr2_2:47241016-47241035 | None:intergenic | 60.0% | |
| !! | CGGTGTCAATGTGGCGGATG+CGG | - | chr2_2:47241014-47241033 | Msa0254320:intron | 60.0% |
| !! | GTCAATGTGGCGGATGCGGT+TGG | - | chr2_2:47241018-47241037 | Msa0254320:intron | 60.0% |
| GACTTGAGGCCACGCCAGAA+GGG | - | chr2_2:47241990-47242009 | Msa0254320:intron | 60.0% | |
| ACTTGAGGCCACGCCAGAAG+GGG | - | chr2_2:47241991-47242010 | Msa0254320:intron | 60.0% | |
| ATCCTCAACCCCTTCTGGCG+TGG | + | chr2_2:47242002-47242021 | None:intergenic | 60.0% | |
| GAGTCGAGTCGAGCTCAGAC+AGG | + | chr2_2:47242477-47242496 | None:intergenic | 60.0% | |
| TTGCTGCTGCGGCACCTTCC+AGG | + | chr2_2:47240449-47240468 | None:intergenic | 65.0% | |
| !! | GGAAGGTGCCGCAGCAGCAA+AGG | - | chr2_2:47240449-47240468 | Msa0254320:intron | 65.0% |
| !! | GGAGATCAGTGCTGGCGGCT+TGG | - | chr2_2:47240587-47240606 | Msa0254320:intron | 65.0% |
| ! | GCGAGGTGGATAGGTTGGGC+CGG | - | chr2_2:47240994-47241013 | Msa0254320:intron | 65.0% |
| GGACTTGAGGCCACGCCAGA+AGG | - | chr2_2:47241989-47242008 | Msa0254320:intron | 65.0% | |
| GGCCACGCCAGAAGGGGTTG+AGG | - | chr2_2:47241997-47242016 | Msa0254320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 47240108 | 47245066 | 47240108 | ID=Msa0254320;Name=Msa0254320 |
| chr2_2 | mRNA | 47240108 | 47245066 | 47240108 | ID=Msa0254320-mRNA-1;Parent=Msa0254320;Name=Msa0254320-mRNA-1;_AED=0.05;_eAED=0.05;_QI=48|0.8|0.5|1|1|1|6|0|453 |
| chr2_2 | exon | 47240108 | 47240296 | 47240108 | ID=Msa0254320-mRNA-1:exon:14408;Parent=Msa0254320-mRNA-1 |
| chr2_2 | exon | 47242860 | 47242961 | 47242860 | ID=Msa0254320-mRNA-1:exon:14407;Parent=Msa0254320-mRNA-1 |
| chr2_2 | exon | 47243126 | 47243240 | 47243126 | ID=Msa0254320-mRNA-1:exon:14406;Parent=Msa0254320-mRNA-1 |
| chr2_2 | exon | 47243587 | 47243975 | 47243587 | ID=Msa0254320-mRNA-1:exon:14405;Parent=Msa0254320-mRNA-1 |
| chr2_2 | exon | 47244100 | 47244197 | 47244100 | ID=Msa0254320-mRNA-1:exon:14404;Parent=Msa0254320-mRNA-1 |
| chr2_2 | exon | 47244550 | 47245066 | 47244550 | ID=Msa0254320-mRNA-1:exon:14403;Parent=Msa0254320-mRNA-1 |
| chr2_2 | five_prime_UTR | 47245019 | 47245066 | 47245019 | ID=Msa0254320-mRNA-1:five_prime_utr;Parent=Msa0254320-mRNA-1 |
| chr2_2 | CDS | 47244550 | 47245018 | 47244550 | ID=Msa0254320-mRNA-1:cds;Parent=Msa0254320-mRNA-1 |
| chr2_2 | CDS | 47244100 | 47244197 | 47244100 | ID=Msa0254320-mRNA-1:cds;Parent=Msa0254320-mRNA-1 |
| chr2_2 | CDS | 47243587 | 47243975 | 47243587 | ID=Msa0254320-mRNA-1:cds;Parent=Msa0254320-mRNA-1 |
| chr2_2 | CDS | 47243126 | 47243240 | 47243126 | ID=Msa0254320-mRNA-1:cds;Parent=Msa0254320-mRNA-1 |
| chr2_2 | CDS | 47242860 | 47242961 | 47242860 | ID=Msa0254320-mRNA-1:cds;Parent=Msa0254320-mRNA-1 |
| chr2_2 | CDS | 47240108 | 47240296 | 47240108 | ID=Msa0254320-mRNA-1:cds;Parent=Msa0254320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
