Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254750 | XP_003596301.1 | 91.640 | 311 | 25 | 1 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254750 | sp|K4BIZ9|WRK70_SOLLC | 35.593 | 177 | 102 | 4 | 52 | 226 | 34 | 200 | 8.21e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254750 | G7IR31 | 91.640 | 311 | 25 | 1 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0254750 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0214360 | Msa0254750 | 0.841430 | 4.774109e-58 | -8.615850e-47 |
| Msa0254750 | Msa0294020 | 0.842880 | 1.973817e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254750 | MtrunA17_Chr2g0315381 | 91.640 | 311 | 25 | 1 | 1 | 311 | 1 | 310 | 0.0 | 567 |
| Msa0254750 | MtrunA17_Chr2g0315361 | 75.570 | 307 | 67 | 7 | 1 | 300 | 1 | 306 | 3.76e-148 | 418 |
| Msa0254750 | MtrunA17_Chr2g0315371 | 68.932 | 309 | 78 | 6 | 1 | 300 | 1 | 300 | 1.32e-142 | 404 |
| Msa0254750 | MtrunA17_Chr7g0244981 | 39.700 | 267 | 132 | 5 | 7 | 273 | 6 | 243 | 1.40e-53 | 176 |
| Msa0254750 | MtrunA17_Chr7g0244971 | 39.568 | 278 | 121 | 8 | 10 | 273 | 10 | 254 | 3.18e-52 | 173 |
| Msa0254750 | MtrunA17_Chr8g0334541 | 41.150 | 226 | 97 | 5 | 17 | 242 | 7 | 196 | 5.44e-44 | 151 |
| Msa0254750 | MtrunA17_Chr8g0350621 | 37.450 | 251 | 119 | 9 | 10 | 255 | 3 | 220 | 6.89e-40 | 140 |
| Msa0254750 | MtrunA17_Chr2g0315401 | 44.776 | 134 | 67 | 3 | 173 | 306 | 20 | 146 | 2.17e-28 | 107 |
| Msa0254750 | MtrunA17_Chr3g0128671 | 39.333 | 150 | 85 | 2 | 60 | 209 | 49 | 192 | 3.77e-27 | 108 |
| Msa0254750 | MtrunA17_Chr2g0315341 | 45.600 | 125 | 62 | 3 | 180 | 302 | 1 | 121 | 1.93e-25 | 98.6 |
| Msa0254750 | MtrunA17_Chr8g0387981 | 32.828 | 198 | 100 | 6 | 18 | 203 | 15 | 191 | 1.85e-24 | 101 |
| Msa0254750 | MtrunA17_Chr5g0428351 | 32.812 | 192 | 92 | 5 | 12 | 203 | 88 | 242 | 8.87e-23 | 96.3 |
| Msa0254750 | MtrunA17_Chr7g0275531 | 47.674 | 86 | 35 | 2 | 127 | 203 | 93 | 177 | 3.15e-20 | 89.4 |
| Msa0254750 | MtrunA17_Chr3g0126391 | 28.436 | 211 | 108 | 7 | 13 | 203 | 5 | 192 | 3.07e-19 | 86.7 |
| Msa0254750 | MtrunA17_Chr8g0347251 | 43.678 | 87 | 40 | 2 | 125 | 203 | 110 | 195 | 6.64e-19 | 85.9 |
| Msa0254750 | MtrunA17_Chr8g0350631 | 48.750 | 80 | 37 | 2 | 163 | 242 | 3 | 78 | 4.32e-17 | 77.0 |
| Msa0254750 | MtrunA17_Chr2g0315391 | 41.129 | 124 | 58 | 7 | 8 | 129 | 6 | 116 | 2.37e-16 | 73.9 |
| Msa0254750 | MtrunA17_Chr2g0315351 | 42.342 | 111 | 54 | 6 | 8 | 116 | 6 | 108 | 8.02e-16 | 72.4 |
| Msa0254750 | MtrunA17_Chr7g0224801 | 47.368 | 76 | 37 | 1 | 137 | 212 | 86 | 158 | 8.68e-15 | 71.2 |
| Msa0254750 | MtrunA17_Chr8g0383351 | 44.444 | 81 | 37 | 2 | 142 | 222 | 158 | 230 | 5.78e-14 | 70.1 |
| Msa0254750 | MtrunA17_Chr7g0270191 | 41.111 | 90 | 45 | 2 | 113 | 202 | 119 | 200 | 1.60e-13 | 69.7 |
| Msa0254750 | MtrunA17_Chr3g0129361 | 50.820 | 61 | 27 | 1 | 142 | 202 | 142 | 199 | 2.80e-13 | 68.2 |
| Msa0254750 | MtrunA17_Chr5g0431811 | 45.312 | 64 | 35 | 0 | 144 | 207 | 672 | 735 | 4.86e-13 | 69.7 |
| Msa0254750 | MtrunA17_Chr5g0418191 | 31.667 | 180 | 103 | 5 | 72 | 243 | 254 | 421 | 7.03e-13 | 68.9 |
| Msa0254750 | MtrunA17_Chr7g0263531 | 38.614 | 101 | 55 | 3 | 104 | 201 | 319 | 415 | 7.30e-13 | 68.6 |
| Msa0254750 | MtrunA17_Chr4g0068541 | 47.458 | 59 | 28 | 1 | 143 | 201 | 207 | 262 | 1.15e-12 | 68.2 |
| Msa0254750 | MtrunA17_Chr4g0051881 | 37.000 | 100 | 58 | 2 | 137 | 234 | 171 | 267 | 2.28e-12 | 66.6 |
| Msa0254750 | MtrunA17_Chr1g0194481 | 39.773 | 88 | 50 | 1 | 115 | 202 | 129 | 213 | 2.99e-12 | 66.2 |
| Msa0254750 | MtrunA17_Chr5g0443131 | 49.153 | 59 | 27 | 1 | 143 | 201 | 156 | 211 | 3.70e-12 | 65.9 |
| Msa0254750 | MtrunA17_Chr5g0418781 | 47.458 | 59 | 28 | 1 | 143 | 201 | 123 | 178 | 5.21e-12 | 65.1 |
| Msa0254750 | MtrunA17_Chr8g0386241 | 32.394 | 142 | 80 | 4 | 69 | 201 | 23 | 157 | 9.06e-12 | 62.8 |
| Msa0254750 | MtrunA17_Chr8g0335811 | 50.000 | 60 | 27 | 1 | 142 | 201 | 152 | 208 | 9.93e-12 | 63.5 |
| Msa0254750 | MtrunA17_Chr2g0294231 | 46.667 | 60 | 29 | 1 | 143 | 202 | 202 | 258 | 1.24e-11 | 64.7 |
| Msa0254750 | MtrunA17_Chr7g0248721 | 47.692 | 65 | 30 | 2 | 137 | 201 | 134 | 194 | 1.48e-11 | 63.2 |
| Msa0254750 | MtrunA17_Chr4g0042831 | 37.755 | 98 | 45 | 3 | 142 | 234 | 276 | 362 | 2.09e-11 | 64.3 |
| Msa0254750 | MtrunA17_Chr7g0238921 | 51.667 | 60 | 26 | 1 | 142 | 201 | 122 | 178 | 2.44e-11 | 63.5 |
| Msa0254750 | MtrunA17_Chr7g0218081 | 46.667 | 60 | 29 | 1 | 142 | 201 | 408 | 464 | 3.36e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0254750 | AT5G22570.1 | 32.524 | 206 | 118 | 6 | 28 | 229 | 9 | 197 | 1.46e-25 | 103 |
| Msa0254750 | AT5G01900.1 | 33.679 | 193 | 100 | 4 | 12 | 204 | 6 | 170 | 1.95e-23 | 97.4 |
| Msa0254750 | AT1G66560.1 | 58.904 | 73 | 29 | 1 | 144 | 215 | 103 | 175 | 4.64e-23 | 95.9 |
| Msa0254750 | AT1G66600.1 | 53.012 | 83 | 33 | 2 | 143 | 219 | 102 | 184 | 1.61e-22 | 94.4 |
| Msa0254750 | AT1G66550.2 | 45.918 | 98 | 42 | 2 | 138 | 234 | 97 | 184 | 2.91e-22 | 94.0 |
| Msa0254750 | AT1G66550.1 | 45.918 | 98 | 42 | 2 | 138 | 234 | 102 | 189 | 3.73e-22 | 93.6 |
| Msa0254750 | AT3G56400.1 | 31.373 | 204 | 114 | 6 | 7 | 206 | 1 | 182 | 1.58e-21 | 92.8 |
| Msa0254750 | AT1G80590.1 | 45.556 | 90 | 43 | 2 | 145 | 234 | 86 | 169 | 3.11e-20 | 88.2 |
| Msa0254750 | AT4G11070.1 | 28.571 | 161 | 105 | 2 | 57 | 207 | 44 | 204 | 4.40e-19 | 86.3 |
| Msa0254750 | AT2G40750.1 | 30.918 | 207 | 121 | 6 | 12 | 203 | 12 | 211 | 4.82e-19 | 86.7 |
| Msa0254750 | AT2G46400.1 | 29.231 | 195 | 98 | 6 | 15 | 203 | 3 | 163 | 6.25e-19 | 85.5 |
| Msa0254750 | AT2G40740.1 | 55.000 | 60 | 27 | 0 | 144 | 203 | 173 | 232 | 7.02e-18 | 82.8 |
| Msa0254750 | AT2G40740.3 | 55.000 | 60 | 27 | 0 | 144 | 203 | 182 | 241 | 9.57e-18 | 82.4 |
| Msa0254750 | AT4G11070.2 | 29.655 | 145 | 92 | 2 | 73 | 207 | 28 | 172 | 1.78e-17 | 81.3 |
| Msa0254750 | AT5G24110.1 | 28.646 | 192 | 104 | 4 | 12 | 203 | 14 | 172 | 2.37e-17 | 81.3 |
| Msa0254750 | AT4G23810.1 | 35.433 | 127 | 74 | 1 | 85 | 203 | 91 | 217 | 2.62e-17 | 81.3 |
| Msa0254750 | AT5G49520.1 | 50.000 | 60 | 27 | 1 | 143 | 202 | 220 | 276 | 2.09e-13 | 70.5 |
| Msa0254750 | AT2G37260.1 | 50.847 | 59 | 26 | 1 | 143 | 201 | 348 | 403 | 6.01e-13 | 69.3 |
| Msa0254750 | AT2G37260.3 | 50.847 | 59 | 26 | 1 | 143 | 201 | 268 | 323 | 7.79e-13 | 68.6 |
| Msa0254750 | AT2G46130.1 | 50.000 | 66 | 28 | 2 | 137 | 201 | 23 | 84 | 8.40e-13 | 64.3 |
| Msa0254750 | AT2G37260.2 | 50.847 | 59 | 26 | 1 | 143 | 201 | 266 | 321 | 8.46e-13 | 68.6 |
| Msa0254750 | AT3G01970.1 | 44.156 | 77 | 40 | 1 | 137 | 213 | 58 | 131 | 9.03e-13 | 65.5 |
| Msa0254750 | AT1G64000.1 | 50.000 | 60 | 27 | 1 | 142 | 201 | 112 | 168 | 2.21e-12 | 65.5 |
| Msa0254750 | AT4G18170.1 | 50.847 | 59 | 26 | 1 | 143 | 201 | 171 | 226 | 4.43e-12 | 66.2 |
| Msa0254750 | AT2G44745.1 | 49.231 | 65 | 30 | 1 | 137 | 201 | 138 | 199 | 5.28e-12 | 64.7 |
| Msa0254750 | AT1G69310.4 | 44.444 | 63 | 32 | 1 | 143 | 205 | 146 | 205 | 5.48e-12 | 65.5 |
| Msa0254750 | AT1G69310.2 | 44.444 | 63 | 32 | 1 | 143 | 205 | 146 | 205 | 5.48e-12 | 65.5 |
| Msa0254750 | AT1G69310.1 | 44.444 | 63 | 32 | 1 | 143 | 205 | 146 | 205 | 5.48e-12 | 65.5 |
| Msa0254750 | AT4G39410.1 | 42.105 | 76 | 41 | 1 | 142 | 217 | 221 | 293 | 7.62e-12 | 65.5 |
| Msa0254750 | AT2G47260.1 | 37.374 | 99 | 59 | 1 | 115 | 213 | 145 | 240 | 8.33e-12 | 65.5 |
| Msa0254750 | AT2G03340.1 | 30.986 | 142 | 84 | 3 | 63 | 201 | 339 | 469 | 9.68e-12 | 65.9 |
| Msa0254750 | AT1G29860.1 | 49.153 | 59 | 27 | 1 | 143 | 201 | 135 | 190 | 1.02e-11 | 64.7 |
| Msa0254750 | AT5G13080.1 | 43.662 | 71 | 37 | 1 | 142 | 212 | 65 | 132 | 1.29e-11 | 62.0 |
| Msa0254750 | AT1G13960.1 | 48.333 | 60 | 28 | 1 | 142 | 201 | 407 | 463 | 1.46e-11 | 65.5 |
| Msa0254750 | AT5G46350.1 | 49.153 | 59 | 27 | 1 | 143 | 201 | 182 | 237 | 1.55e-11 | 64.7 |
| Msa0254750 | AT5G41570.1 | 46.154 | 65 | 32 | 1 | 137 | 201 | 91 | 152 | 1.73e-11 | 62.4 |
| Msa0254750 | AT1G13960.2 | 48.333 | 60 | 28 | 1 | 142 | 201 | 254 | 310 | 5.98e-11 | 63.2 |
Find 54 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGATCTCCAGCAATTA+AGG | 0.210019 | 2_2:+48335971 | None:intergenic |
| CCAATATTTGACCTAGTTAT+AGG | 0.212247 | 2_2:-48336160 | Msa0254750:five_prime_UTR |
| GCATTCAGATAATATAAATT+TGG | 0.219153 | 2_2:-48331350 | Msa0254750:CDS |
| CAACAAGCTTGAGGAGGATT+TGG | 0.242987 | 2_2:-48335835 | Msa0254750:CDS |
| AGCCACATCATTGGAGTCTT+TGG | 0.282004 | 2_2:+48335899 | None:intergenic |
| TTGACCTAGTTATAGGATAA+TGG | 0.321930 | 2_2:-48336153 | Msa0254750:exon |
| CCTATAACTAGGTCAAATAT+TGG | 0.336321 | 2_2:+48336160 | None:intergenic |
| ATTGCTTTCTTGCCATTTGT+TGG | 0.339828 | 2_2:+48336113 | None:intergenic |
| TGACTTATCATCATATGTTA+TGG | 0.341599 | 2_2:+48336040 | None:intergenic |
| CCAGCAATTAAGGGTAAAAC+TGG | 0.365538 | 2_2:+48335981 | None:intergenic |
| GAGAATGTTTATGACCAGTT+AGG | 0.367450 | 2_2:-48331064 | Msa0254750:CDS |
| GTGTACCGGACTACATATTA+TGG | 0.389234 | 2_2:-48331397 | Msa0254750:CDS |
| CTGCTTTGGCTTCCAACAAA+TGG | 0.408980 | 2_2:-48336125 | Msa0254750:CDS |
| ATAACCATCAAAATCCTAAC+TGG | 0.409349 | 2_2:+48331050 | None:intergenic |
| ATCATCATGGATCTCTTCCT+TGG | 0.411162 | 2_2:+48331204 | None:intergenic |
| GGTCATACTTGGAGAAAGTA+TGG | 0.428672 | 2_2:-48331910 | Msa0254750:CDS |
| TAAGGTCAATTTCACCAACT+TGG | 0.438783 | 2_2:-48331963 | Msa0254750:intron |
| CTTCAAAGTTACATGATATG+AGG | 0.441570 | 2_2:+48331146 | None:intergenic |
| TGATTGATGACGGTCATACT+TGG | 0.450773 | 2_2:-48331921 | Msa0254750:CDS |
| TATTGGAACAGCCACATCAT+TGG | 0.456556 | 2_2:+48335890 | None:intergenic |
| TATATTATCTGAATGCAAAT+CGG | 0.462264 | 2_2:+48331357 | None:intergenic |
| GGATAATGGAGAATCTGCTT+TGG | 0.464816 | 2_2:-48336139 | Msa0254750:exon |
| ATTTCTTGCATCTACAAAAG+AGG | 0.469251 | 2_2:-48331230 | Msa0254750:CDS |
| ACAAGATCTCCAGCAATTAA+GGG | 0.474137 | 2_2:+48335972 | None:intergenic |
| AAGGTCAATTTCACCAACTT+GGG | 0.485800 | 2_2:-48331962 | Msa0254750:CDS |
| ATGTATGCAGGAGCTACTAT+AGG | 0.489699 | 2_2:-48331489 | Msa0254750:intron |
| TCATCATGGATCTCTTCCTT+GGG | 0.495757 | 2_2:+48331205 | None:intergenic |
| TTTGAGAAGAATAATCATCA+TGG | 0.510633 | 2_2:+48331191 | None:intergenic |
| ATGGAAGAAGAGCTTATAAG+AGG | 0.516162 | 2_2:-48336092 | Msa0254750:CDS |
| TAATATGTAGTCCGGTACAC+TGG | 0.547102 | 2_2:+48331400 | None:intergenic |
| AGTCAAATATAGAAGTGAAA+GGG | 0.551702 | 2_2:-48336022 | Msa0254750:CDS |
| AAGTCAAATATAGAAGTGAA+AGG | 0.557104 | 2_2:-48336023 | Msa0254750:CDS |
| AAGAGAACCCTCCAGTGTAC+CGG | 0.558936 | 2_2:-48331411 | Msa0254750:CDS |
| GATGGCCATAATATGTAGTC+CGG | 0.559159 | 2_2:+48331392 | None:intergenic |
| AAGCTTGAGGAGGATTTGGA+TGG | 0.559719 | 2_2:-48335831 | Msa0254750:CDS |
| TCGCAAATACGAAATACTAC+AGG | 0.562971 | 2_2:-48331876 | Msa0254750:intron |
| TTCTCCATTATCCTATAACT+AGG | 0.575535 | 2_2:+48336149 | None:intergenic |
| ACTTCAATATTGATTGATGA+CGG | 0.580045 | 2_2:-48331931 | Msa0254750:CDS |
| AACGAATTGCAACAAGCTTG+AGG | 0.590596 | 2_2:-48335844 | Msa0254750:CDS |
| AGAAATTGTGATGGTGATGG+TGG | 0.592211 | 2_2:+48331247 | None:intergenic |
| ATCTACAAAAGAGGATCCCA+AGG | 0.594636 | 2_2:-48331221 | Msa0254750:CDS |
| TTTCTCTTGTTCGACCCTGT+AGG | 0.601177 | 2_2:+48335771 | None:intergenic |
| AACAAATGGCAAGAAAGCAA+TGG | 0.602679 | 2_2:-48336111 | Msa0254750:CDS |
| AGAGTCATCACATGACAAAG+TGG | 0.606996 | 2_2:+48331324 | None:intergenic |
| TTCAATCGATGATAGCATAG+TGG | 0.608625 | 2_2:+48331099 | None:intergenic |
| CGCCAAAGACTCCAATGATG+TGG | 0.609286 | 2_2:-48335901 | Msa0254750:CDS |
| GCTTATAAGAGGACGTGACA+TGG | 0.611904 | 2_2:-48336081 | Msa0254750:CDS |
| ATGTAGTCCGGTACACTGGA+GGG | 0.612544 | 2_2:+48331404 | None:intergenic |
| TCAATGATTTAAGTACCTCA+CGG | 0.616583 | 2_2:+48335949 | None:intergenic |
| TATGTAGTCCGGTACACTGG+AGG | 0.631274 | 2_2:+48331403 | None:intergenic |
| GTAGATGCAAGAAATTGTGA+TGG | 0.639121 | 2_2:+48331238 | None:intergenic |
| TGCTGGAGATCTTGTCCGTG+AGG | 0.652783 | 2_2:-48335964 | Msa0254750:CDS |
| GCAAGAAATTGTGATGGTGA+TGG | 0.652959 | 2_2:+48331244 | None:intergenic |
| GAATTGCAACAAGCTTGAGG+AGG | 0.664236 | 2_2:-48335841 | Msa0254750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTTATTTTATTT+AGG | - | chr2_2:48331679-48331698 | Msa0254750:intron | 0.0% |
| !!! | TAAATTAATATTTTATTTTT+TGG | + | chr2_2:48333051-48333070 | None:intergenic | 0.0% |
| !!! | TATTTTTATTTATAAAATAA+AGG | + | chr2_2:48334517-48334536 | None:intergenic | 0.0% |
| !! | TATTTCATATATAATTTAGA+TGG | - | chr2_2:48331581-48331600 | Msa0254750:intron | 10.0% |
| !!! | AATAACACTAATTTAATTTT+AGG | + | chr2_2:48331758-48331777 | None:intergenic | 10.0% |
| !! | AGATTGTAATAAATTATAAA+GGG | + | chr2_2:48332586-48332605 | None:intergenic | 10.0% |
| !!! | TATTTTTGTTTTTTAACATA+TGG | - | chr2_2:48332976-48332995 | Msa0254750:intron | 10.0% |
| !! | TAAAAGTAAAATTACATAAA+AGG | + | chr2_2:48333174-48333193 | None:intergenic | 10.0% |
| !!! | AAAAAAAGTCTATTATTTTA+GGG | + | chr2_2:48333670-48333689 | None:intergenic | 10.0% |
| !!! | AAAAAAAAGTCTATTATTTT+AGG | + | chr2_2:48333671-48333690 | None:intergenic | 10.0% |
| !! | CTAAAAATAAAGTTAAATTA+GGG | + | chr2_2:48334294-48334313 | None:intergenic | 10.0% |
| !!! | ATAGTTTATTTATATTTTTC+TGG | - | chr2_2:48335154-48335173 | Msa0254750:intron | 10.0% |
| !! | AAGATAAAAATGAAAAATGA+AGG | - | chr2_2:48331713-48331732 | Msa0254750:intron | 15.0% |
| !! | AGATAAAAATGAAAAATGAA+GGG | - | chr2_2:48331714-48331733 | Msa0254750:intron | 15.0% |
| !! | AAAACTTCTTGTTAAATTTA+TGG | + | chr2_2:48331794-48331813 | None:intergenic | 15.0% |
| !!! | AAAGTAAGTTTTATAAAGTA+GGG | + | chr2_2:48332110-48332129 | None:intergenic | 15.0% |
| !!! | TAAAGTAAGTTTTATAAAGT+AGG | + | chr2_2:48332111-48332130 | None:intergenic | 15.0% |
| !! | TTTAAACATTTGTTTATAAG+TGG | + | chr2_2:48332149-48332168 | None:intergenic | 15.0% |
| !! | TAAATTATAAAGGGTAAAAA+GGG | + | chr2_2:48332577-48332596 | None:intergenic | 15.0% |
| !! | ATAAATTATAAAGGGTAAAA+AGG | + | chr2_2:48332578-48332597 | None:intergenic | 15.0% |
| !! | CAGATTGTAATAAATTATAA+AGG | + | chr2_2:48332587-48332606 | None:intergenic | 15.0% |
| !! | TATAAGTAAATTATGTTTGT+TGG | - | chr2_2:48332750-48332769 | Msa0254750:intron | 15.0% |
| !!! | AAAAAAGTCTATTATTTTAG+GGG | + | chr2_2:48333669-48333688 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTGTAGAAAAG+AGG | - | chr2_2:48333687-48333706 | Msa0254750:intron | 15.0% |
| !!! | TTTTTTTTTTGTAGAAAAGA+GGG | - | chr2_2:48333688-48333707 | Msa0254750:intron | 15.0% |
| !!! | TTTATAACTTTTTTTTTGAG+GGG | + | chr2_2:48334240-48334259 | None:intergenic | 15.0% |
| !!! | GTTTATAACTTTTTTTTTGA+GGG | + | chr2_2:48334241-48334260 | None:intergenic | 15.0% |
| !! | CCTAAAAATAAAGTTAAATT+AGG | + | chr2_2:48334295-48334314 | None:intergenic | 15.0% |
| !!! | CCTAATTTAACTTTATTTTT+AGG | - | chr2_2:48334292-48334311 | Msa0254750:intron | 15.0% |
| !! | ATAAGTATAAAATTATCACA+AGG | + | chr2_2:48335523-48335542 | None:intergenic | 15.0% |
| !! | CTTCAAAACTAATAATTAAT+TGG | - | chr2_2:48335700-48335719 | Msa0254750:intron | 15.0% |
| !!! | AAATAACTCTTTTTTTACTG+GGG | + | chr2_2:48331566-48331585 | None:intergenic | 20.0% |
| !!! | GAAATAACTCTTTTTTTACT+GGG | + | chr2_2:48331567-48331586 | None:intergenic | 20.0% |
| !!! | TGAAATAACTCTTTTTTTAC+TGG | + | chr2_2:48331568-48331587 | None:intergenic | 20.0% |
| !! | AAAATGAGTTACTTATGAAA+GGG | + | chr2_2:48331851-48331870 | None:intergenic | 20.0% |
| !! | AATAGATGTGTTTATAAGTA+GGG | + | chr2_2:48331967-48331986 | None:intergenic | 20.0% |
| !! | TAATAGATGTGTTTATAAGT+AGG | + | chr2_2:48331968-48331987 | None:intergenic | 20.0% |
| !!! | GATTTTAGATAAAATAGCAA+GGG | + | chr2_2:48332555-48332574 | None:intergenic | 20.0% |
| !! | CAAAAATATTAAAAGTGAAG+AGG | + | chr2_2:48332964-48332983 | None:intergenic | 20.0% |
| !! | GAAATATTTGATATGTAAGT+TGG | - | chr2_2:48333575-48333594 | Msa0254750:intron | 20.0% |
| !! | TGACAAATAAATCACAAATA+AGG | - | chr2_2:48333809-48333828 | Msa0254750:intron | 20.0% |
| !!! | GGTTTATAACTTTTTTTTTG+AGG | + | chr2_2:48334242-48334261 | None:intergenic | 20.0% |
| !!! | AGTAGTTTGTATAAAAAAAG+TGG | - | chr2_2:48334386-48334405 | Msa0254750:intron | 20.0% |
| !! | TTAAAATGAAAACTTGAGTT+TGG | - | chr2_2:48334777-48334796 | Msa0254750:intron | 20.0% |
| !! | GTATAAAAGAATGAAAAGAT+TGG | + | chr2_2:48334880-48334899 | None:intergenic | 20.0% |
| !!! | AGTATACTTTTGTTTTGTTA+GGG | + | chr2_2:48334918-48334937 | None:intergenic | 20.0% |
| !!! | AAGTATACTTTTGTTTTGTT+AGG | + | chr2_2:48334919-48334938 | None:intergenic | 20.0% |
| !! | TAATGATAATTATGTATGTC+TGG | + | chr2_2:48335095-48335114 | None:intergenic | 20.0% |
| !! | TATTATTGTCTTCATACTTA+AGG | - | chr2_2:48335235-48335254 | Msa0254750:intron | 20.0% |
| !! | TTGTGTTTAAGAAAATTGAT+TGG | + | chr2_2:48335610-48335629 | None:intergenic | 20.0% |
| !! | TATATTATCTGAATGCAAAT+CGG | + | chr2_2:48335862-48335881 | None:intergenic | 20.0% |
| !! | GCATTCAGATAATATAAATT+TGG | - | chr2_2:48335866-48335885 | Msa0254750:CDS | 20.0% |
| ! | TGACTTATCATCATATGTTA+TGG | + | chr2_2:48331179-48331198 | None:intergenic | 25.0% |
| ! | AAGTCAAATATAGAAGTGAA+AGG | - | chr2_2:48331193-48331212 | Msa0254750:CDS | 25.0% |
| ! | AGTCAAATATAGAAGTGAAA+GGG | - | chr2_2:48331194-48331213 | Msa0254750:CDS | 25.0% |
| ! | GAAAAATCACTAACACTTAT+TGG | + | chr2_2:48331346-48331365 | None:intergenic | 25.0% |
| !! | GAGTATTTGACTTATTTCAA+AGG | - | chr2_2:48331514-48331533 | Msa0254750:intron | 25.0% |
| ! | GAAAATGAGTTACTTATGAA+AGG | + | chr2_2:48331852-48331871 | None:intergenic | 25.0% |
| ! | TATGTCAAAAACGATTTGTA+TGG | - | chr2_2:48331931-48331950 | Msa0254750:CDS | 25.0% |
| ! | AAACACATCTATTATGTCTA+TGG | - | chr2_2:48331974-48331993 | Msa0254750:intron | 25.0% |
| ! | ATGTGATCTAACAGATTATA+TGG | - | chr2_2:48332044-48332063 | Msa0254750:intron | 25.0% |
| ! | TACTATATTGGACTTTAGAT+CGG | - | chr2_2:48332078-48332097 | Msa0254750:intron | 25.0% |
| ! | ATCTCACATTTGATGAAATA+AGG | + | chr2_2:48332172-48332191 | None:intergenic | 25.0% |
| ! | ATGTTGGATATATATAAGAG+AGG | - | chr2_2:48332296-48332315 | Msa0254750:intron | 25.0% |
| !! | GGATTTTAGATAAAATAGCA+AGG | + | chr2_2:48332556-48332575 | None:intergenic | 25.0% |
| !! | AAAGTGTTTGGTAAAAATAG+CGG | + | chr2_2:48333210-48333229 | None:intergenic | 25.0% |
| !! | GATAAGCTAATTAAAGTGTT+TGG | + | chr2_2:48333222-48333241 | None:intergenic | 25.0% |
| !! | CCTTTATGTCTTAAGATTTT+GGG | - | chr2_2:48333348-48333367 | Msa0254750:intron | 25.0% |
| ! | ATCCAAATTCTATCCAAAAT+CGG | + | chr2_2:48333620-48333639 | None:intergenic | 25.0% |
| !! | TTTTGGATAGAATTTGGATT+AGG | - | chr2_2:48333621-48333640 | Msa0254750:intron | 25.0% |
| ! | ACATATAATAGCATATAGGT+GGG | + | chr2_2:48334007-48334026 | None:intergenic | 25.0% |
| ! | AACATATAATAGCATATAGG+TGG | + | chr2_2:48334008-48334027 | None:intergenic | 25.0% |
| ! | GCAAACATATAATAGCATAT+AGG | + | chr2_2:48334011-48334030 | None:intergenic | 25.0% |
| !! | CACTTTGATTTACAATATAG+CGG | - | chr2_2:48334081-48334100 | Msa0254750:intron | 25.0% |
| !! | TTAATGCCACTTATATATTG+TGG | + | chr2_2:48334131-48334150 | None:intergenic | 25.0% |
| ! | CACTGTCTTAACAATAATTA+GGG | + | chr2_2:48334263-48334282 | None:intergenic | 25.0% |
| ! | TCACTGTCTTAACAATAATT+AGG | + | chr2_2:48334264-48334283 | None:intergenic | 25.0% |
| ! | AAAGTGGTGTAATTATTGTT+AGG | - | chr2_2:48334402-48334421 | Msa0254750:intron | 25.0% |
| ! | CAAGAAAAAGTTTCTACTAA+TGG | - | chr2_2:48334448-48334467 | Msa0254750:intron | 25.0% |
| ! | ATATATAGCACATCTCTAAA+TGG | - | chr2_2:48334624-48334643 | Msa0254750:intron | 25.0% |
| ! | TTCATTAGACTTACTCAAAT+GGG | - | chr2_2:48334726-48334745 | Msa0254750:intron | 25.0% |
| ! | TTTGGATAATTCATTCATGT+GGG | - | chr2_2:48334795-48334814 | Msa0254750:intron | 25.0% |
| !!! | GTATACTTTTGTTTTGTTAG+GGG | + | chr2_2:48334917-48334936 | None:intergenic | 25.0% |
| !!! | ATGTCTGTATCCTTTTTTTT+AGG | - | chr2_2:48334965-48334984 | Msa0254750:intron | 25.0% |
| !! | ACTTCAATATTGATTGATGA+CGG | - | chr2_2:48335285-48335304 | Msa0254750:intron | 25.0% |
| !! | TTAATTGGTAATATGTATGC+AGG | - | chr2_2:48335715-48335734 | Msa0254750:intron | 25.0% |
| !! | AACGAGTTTTCTTCTTTAAT+TGG | + | chr2_2:48335948-48335967 | None:intergenic | 25.0% |
| ! | TTTGAGAAGAATAATCATCA+TGG | + | chr2_2:48336028-48336047 | None:intergenic | 25.0% |
| TTGACCTAGTTATAGGATAA+TGG | - | chr2_2:48331063-48331082 | Msa0254750:CDS | 30.0% | |
| TTCTCCATTATCCTATAACT+AGG | + | chr2_2:48331070-48331089 | None:intergenic | 30.0% | |
| TCAATGATTTAAGTACCTCA+CGG | + | chr2_2:48331270-48331289 | None:intergenic | 30.0% | |
| ! | CATCGAGTTAAGATTTTAGA+GGG | - | chr2_2:48331647-48331666 | Msa0254750:intron | 30.0% |
| !! | ATCGAGTTAAGATTTTAGAG+GGG | - | chr2_2:48331648-48331667 | Msa0254750:intron | 30.0% |
| GATAGACTCTGATACTATAT+TGG | - | chr2_2:48332066-48332085 | Msa0254750:intron | 30.0% | |
| ACTATATTGGACTTTAGATC+GGG | - | chr2_2:48332079-48332098 | Msa0254750:intron | 30.0% | |
| TTATACTTGAAACGCAAAAC+AGG | + | chr2_2:48332241-48332260 | None:intergenic | 30.0% | |
| ! | CGTTTCAAGTATAAGTGATT+AGG | - | chr2_2:48332247-48332266 | Msa0254750:intron | 30.0% |
| CTGATGAATGAGTAAAATGT+TGG | - | chr2_2:48332280-48332299 | Msa0254750:intron | 30.0% | |
| CTATAAGCTATAAGCTCATT+TGG | + | chr2_2:48332357-48332376 | None:intergenic | 30.0% | |
| TTGACAAAAAAAGCTCTGTT+TGG | - | chr2_2:48332397-48332416 | Msa0254750:intron | 30.0% | |
| AAAAATAGCTTATAAGCTCG+TGG | + | chr2_2:48332466-48332485 | None:intergenic | 30.0% | |
| ! | GCCTTTATGTCTTAAGATTT+TGG | - | chr2_2:48333347-48333366 | Msa0254750:intron | 30.0% |
| CCCAAAATCTTAAGACATAA+AGG | + | chr2_2:48333351-48333370 | None:intergenic | 30.0% | |
| ! | TTATGTCTTAAGATTTTGGG+TGG | - | chr2_2:48333351-48333370 | Msa0254750:intron | 30.0% |
| CAAATATTTCACCCACTTAT+AGG | + | chr2_2:48333565-48333584 | None:intergenic | 30.0% | |
| !! | TAGTTTTACCAAACCGATTT+TGG | - | chr2_2:48333604-48333623 | Msa0254750:intron | 30.0% |
| AATTCTATCCAAAATCGGTT+TGG | + | chr2_2:48333615-48333634 | None:intergenic | 30.0% | |
| !! | AACCGATTTTGGATAGAATT+TGG | - | chr2_2:48333615-48333634 | Msa0254750:intron | 30.0% |
| !! | CTTACATATACTGACTTGTA+AGG | + | chr2_2:48333863-48333882 | None:intergenic | 30.0% |
| CTTACAAGTCAGTATATGTA+AGG | - | chr2_2:48333861-48333880 | Msa0254750:intron | 30.0% | |
| AATCATCTTGCTGAAGATTT+AGG | + | chr2_2:48334052-48334071 | None:intergenic | 30.0% | |
| TACGATCCACAATATATAAG+TGG | - | chr2_2:48334122-48334141 | Msa0254750:intron | 30.0% | |
| ATAAGTGGCATTAAGTTACA+AGG | - | chr2_2:48334137-48334156 | Msa0254750:intron | 30.0% | |
| TAAGTGGCATTAAGTTACAA+GGG | - | chr2_2:48334138-48334157 | Msa0254750:intron | 30.0% | |
| CATTAAGTTACAAGGGTTTA+CGG | - | chr2_2:48334145-48334164 | Msa0254750:intron | 30.0% | |
| !!! | ATAACTTTTTTTTTGAGGGG+AGG | + | chr2_2:48334237-48334256 | None:intergenic | 30.0% |
| ! | TGTTATGTAGTTGATGTACT+AGG | + | chr2_2:48334565-48334584 | None:intergenic | 30.0% |
| !!! | TCTTTCGGTGTCAATTTTAA+TGG | + | chr2_2:48334657-48334676 | None:intergenic | 30.0% |
| TTGAGTAAGTCTAATGAAGT+TGG | + | chr2_2:48334724-48334743 | None:intergenic | 30.0% | |
| CTTCATTAGACTTACTCAAA+TGG | - | chr2_2:48334725-48334744 | Msa0254750:intron | 30.0% | |
| GTTTGGATAATTCATTCATG+TGG | - | chr2_2:48334794-48334813 | Msa0254750:intron | 30.0% | |
| ATAATTCATTCATGTGGGAT+TGG | - | chr2_2:48334800-48334819 | Msa0254750:intron | 30.0% | |
| TAATTCATTCATGTGGGATT+GGG | - | chr2_2:48334801-48334820 | Msa0254750:intron | 30.0% | |
| ACATATATTCCCTAACGAAA+GGG | + | chr2_2:48334949-48334968 | None:intergenic | 30.0% | |
| TGATAATTATGTATGTCTGG+AGG | + | chr2_2:48335092-48335111 | None:intergenic | 30.0% | |
| ATTTCTTGCATCTACAAAAG+AGG | - | chr2_2:48335986-48336005 | Msa0254750:CDS | 30.0% | |
| CTTCAAAGTTACATGATATG+AGG | + | chr2_2:48336073-48336092 | None:intergenic | 30.0% | |
| ! | ATTGCTTTCTTGCCATTTGT+TGG | + | chr2_2:48331106-48331125 | None:intergenic | 35.0% |
| AACAAATGGCAAGAAAGCAA+TGG | - | chr2_2:48331105-48331124 | Msa0254750:CDS | 35.0% | |
| ATGGAAGAAGAGCTTATAAG+AGG | - | chr2_2:48331124-48331143 | Msa0254750:CDS | 35.0% | |
| ACAAGATCTCCAGCAATTAA+GGG | + | chr2_2:48331247-48331266 | None:intergenic | 35.0% | |
| TCAACACCAAAAATCCTACA+GGG | - | chr2_2:48331431-48331450 | Msa0254750:CDS | 35.0% | |
| TGATGTTAATGTCACGAAAC+TGG | - | chr2_2:48331616-48331635 | Msa0254750:intron | 35.0% | |
| !! | CCTCTAAAATCTTAACTCGA+TGG | + | chr2_2:48331649-48331668 | None:intergenic | 35.0% |
| ! | CCATCGAGTTAAGATTTTAG+AGG | - | chr2_2:48331646-48331665 | Msa0254750:intron | 35.0% |
| TACTCATTCATCAGTGATGT+GGG | + | chr2_2:48332274-48332293 | None:intergenic | 35.0% | |
| TTACTCATTCATCAGTGATG+TGG | + | chr2_2:48332275-48332294 | None:intergenic | 35.0% | |
| !! | CATTATACTTTGGCTCTGTT+TGG | - | chr2_2:48332323-48332342 | Msa0254750:intron | 35.0% |
| AAGCTATAAGCTCATTTGGT+GGG | + | chr2_2:48332353-48332372 | None:intergenic | 35.0% | |
| TAAGCTATAAGCTCATTTGG+TGG | + | chr2_2:48332354-48332373 | None:intergenic | 35.0% | |
| TGAAATAAGCTATAAGCTCG+TGG | + | chr2_2:48332436-48332455 | None:intergenic | 35.0% | |
| TAAAATAGCAAGGGCAAAAG+TGG | + | chr2_2:48332546-48332565 | None:intergenic | 35.0% | |
| GCTCTGTTTGGTAAAAATAG+CGG | + | chr2_2:48333329-48333348 | None:intergenic | 35.0% | |
| TAAGACATAAAGGCTCTGTT+TGG | + | chr2_2:48333341-48333360 | None:intergenic | 35.0% | |
| ! | TTGGATTAGGTCTAACTCAA+CGG | - | chr2_2:48333634-48333653 | Msa0254750:intron | 35.0% |
| ACCAATTAACGCTCTTATCA+CGG | - | chr2_2:48333920-48333939 | Msa0254750:intron | 35.0% | |
| AAAAATGAGTGAAGGGTTGT+GGG | + | chr2_2:48333949-48333968 | None:intergenic | 35.0% | |
| CTGTGACAAAAATGAGTGAA+GGG | + | chr2_2:48333956-48333975 | None:intergenic | 35.0% | |
| TCTGTGACAAAAATGAGTGA+AGG | + | chr2_2:48333957-48333976 | None:intergenic | 35.0% | |
| TAGTACTATTCCGTTCATCA+TGG | - | chr2_2:48334186-48334205 | Msa0254750:intron | 35.0% | |
| AGAATGCTAATGAGTACCTT+TGG | - | chr2_2:48334339-48334358 | Msa0254750:intron | 35.0% | |
| GAATGCTAATGAGTACCTTT+GGG | - | chr2_2:48334340-48334359 | Msa0254750:intron | 35.0% | |
| AATGCTAATGAGTACCTTTG+GGG | - | chr2_2:48334341-48334360 | Msa0254750:intron | 35.0% | |
| TACTTTAATCGATACCCCAA+AGG | + | chr2_2:48334358-48334377 | None:intergenic | 35.0% | |
| ! | AATCAGTACTCTAAGGGAAT+TGG | + | chr2_2:48334483-48334502 | None:intergenic | 35.0% |
| CATGCTAATCAGTACTCTAA+GGG | + | chr2_2:48334489-48334508 | None:intergenic | 35.0% | |
| ! | GTGTTTGGTTCGATTTCTTT+CGG | + | chr2_2:48334672-48334691 | None:intergenic | 35.0% |
| AGAAATCGAACCAAACACTT+TGG | - | chr2_2:48334674-48334693 | Msa0254750:intron | 35.0% | |
| !!! | TGTGCTTTTTCCAAAGTGTT+TGG | + | chr2_2:48334687-48334706 | None:intergenic | 35.0% |
| !!! | ACTTTTGTTTTGTTAGGGGA+GGG | + | chr2_2:48334913-48334932 | None:intergenic | 35.0% |
| !!! | TACTTTTGTTTTGTTAGGGG+AGG | + | chr2_2:48334914-48334933 | None:intergenic | 35.0% |
| GACATATATTCCCTAACGAA+AGG | + | chr2_2:48334950-48334969 | None:intergenic | 35.0% | |
| CAGCACATCTCCTAAAAAAA+AGG | + | chr2_2:48334978-48334997 | None:intergenic | 35.0% | |
| GAGATGTGCTGTATACTTAA+AGG | - | chr2_2:48334987-48335006 | Msa0254750:intron | 35.0% | |
| AAAGGATCAAATTCTACTCG+AGG | + | chr2_2:48335049-48335068 | None:intergenic | 35.0% | |
| TAAGGTCAATTTCACCAACT+TGG | - | chr2_2:48335253-48335272 | Msa0254750:intron | 35.0% | |
| AAGGTCAATTTCACCAACTT+GGG | - | chr2_2:48335254-48335273 | Msa0254750:intron | 35.0% | |
| TCGCAAATACGAAATACTAC+AGG | - | chr2_2:48335340-48335359 | Msa0254750:intron | 35.0% | |
| GTCCACTTAAAAAGACTTAG+CGG | + | chr2_2:48335588-48335607 | None:intergenic | 35.0% | |
| GTAGATGCAAGAAATTGTGA+TGG | + | chr2_2:48335981-48336000 | None:intergenic | 35.0% | |
| TTCAATCGATGATAGCATAG+TGG | + | chr2_2:48336120-48336139 | None:intergenic | 35.0% | |
| GAGAATGTTTATGACCAGTT+AGG | - | chr2_2:48336152-48336171 | Msa0254750:exon | 35.0% | |
| !! | GGATAATGGAGAATCTGCTT+TGG | - | chr2_2:48331077-48331096 | Msa0254750:CDS | 40.0% |
| CCAGCAATTAAGGGTAAAAC+TGG | + | chr2_2:48331238-48331257 | None:intergenic | 40.0% | |
| ! | CCAGTTTTACCCTTAATTGC+TGG | - | chr2_2:48331235-48331254 | Msa0254750:CDS | 40.0% |
| GACAAGATCTCCAGCAATTA+AGG | + | chr2_2:48331248-48331267 | None:intergenic | 40.0% | |
| TATTGGAACAGCCACATCAT+TGG | + | chr2_2:48331329-48331348 | None:intergenic | 40.0% | |
| AACGAATTGCAACAAGCTTG+AGG | - | chr2_2:48331372-48331391 | Msa0254750:CDS | 40.0% | |
| CTCAACACCAAAAATCCTAC+AGG | - | chr2_2:48331430-48331449 | Msa0254750:CDS | 40.0% | |
| TTAATGTCACGAAACTGGTC+TGG | - | chr2_2:48331621-48331640 | Msa0254750:intron | 40.0% | |
| ! | TAATGTCACGAAACTGGTCT+GGG | - | chr2_2:48331622-48331641 | Msa0254750:intron | 40.0% |
| GAGAGGTGAGCATTATACTT+TGG | - | chr2_2:48332313-48332332 | Msa0254750:intron | 40.0% | |
| TATCATAGCCCCAATATCCT+TGG | + | chr2_2:48333432-48333451 | None:intergenic | 40.0% | |
| GCTATGATACGATTCTATGG+AGG | - | chr2_2:48333443-48333462 | Msa0254750:intron | 40.0% | |
| ! | GTGGATCTTGGTATTGGATT+AGG | - | chr2_2:48333467-48333486 | Msa0254750:intron | 40.0% |
| ! | CTTGGTATTGGATTAGGTGT+AGG | - | chr2_2:48333473-48333492 | Msa0254750:intron | 40.0% |
| GAAGTGAGAACTCACACTTA+GGG | - | chr2_2:48333495-48333514 | Msa0254750:intron | 40.0% | |
| TGTTGGACTTCAAGTGTGAT+TGG | - | chr2_2:48333524-48333543 | Msa0254750:intron | 40.0% | |
| CTTTAGTAGAGCTAAGTGTG+AGG | - | chr2_2:48333764-48333783 | Msa0254750:intron | 40.0% | |
| !! | GTGGTGAAAGTATTGCAGTT+TGG | + | chr2_2:48333902-48333921 | None:intergenic | 40.0% |
| !! | GTGATAAGAGCGTTAATTGG+TGG | + | chr2_2:48333921-48333940 | None:intergenic | 40.0% |
| !! | ACCGTGATAAGAGCGTTAAT+TGG | + | chr2_2:48333924-48333943 | None:intergenic | 40.0% |
| CAAAAATGAGTGAAGGGTTG+TGG | + | chr2_2:48333950-48333969 | None:intergenic | 40.0% | |
| !! | AGGTGGGAAAAGTGTTTGAA+AGG | + | chr2_2:48333991-48334010 | None:intergenic | 40.0% |
| AGTTACAAGGGTTTACGGAA+TGG | - | chr2_2:48334150-48334169 | Msa0254750:intron | 40.0% | |
| TTAGCTAGAGCCATGATGAA+CGG | + | chr2_2:48334199-48334218 | None:intergenic | 40.0% | |
| GCATGCTAATCAGTACTCTA+AGG | + | chr2_2:48334490-48334509 | None:intergenic | 40.0% | |
| !!! | TTTTGTTTTGTTAGGGGAGG+GGG | + | chr2_2:48334911-48334930 | None:intergenic | 40.0% |
| !!! | CTTTTGTTTTGTTAGGGGAG+GGG | + | chr2_2:48334912-48334931 | None:intergenic | 40.0% |
| TTGTCAGTACCCTTTCGTTA+GGG | - | chr2_2:48334937-48334956 | Msa0254750:intron | 40.0% | |
| TAGCTGTGCTGCAGATTAAA+AGG | + | chr2_2:48335067-48335086 | None:intergenic | 40.0% | |
| !!! | GAAGTGCTTTTTTCCCAAGT+TGG | + | chr2_2:48335270-48335289 | None:intergenic | 40.0% |
| !! | TGATTGATGACGGTCATACT+TGG | - | chr2_2:48335295-48335314 | Msa0254750:intron | 40.0% |
| GGTCATACTTGGAGAAAGTA+TGG | - | chr2_2:48335306-48335325 | Msa0254750:intron | 40.0% | |
| ATGTATGCAGGAGCTACTAT+AGG | - | chr2_2:48335727-48335746 | Msa0254750:intron | 40.0% | |
| TAATATGTAGTCCGGTACAC+TGG | + | chr2_2:48335819-48335838 | None:intergenic | 40.0% | |
| GTGTACCGGACTACATATTA+TGG | - | chr2_2:48335819-48335838 | Msa0254750:CDS | 40.0% | |
| GATGGCCATAATATGTAGTC+CGG | + | chr2_2:48335827-48335846 | None:intergenic | 40.0% | |
| !! | AATCGGTTTTGCAAGTGTGA+TGG | + | chr2_2:48335845-48335864 | None:intergenic | 40.0% |
| AGAGTCATCACATGACAAAG+TGG | + | chr2_2:48335895-48335914 | None:intergenic | 40.0% | |
| !! | AGAAATTGTGATGGTGATGG+TGG | + | chr2_2:48335972-48335991 | None:intergenic | 40.0% |
| ! | GCAAGAAATTGTGATGGTGA+TGG | + | chr2_2:48335975-48335994 | None:intergenic | 40.0% |
| ATCTACAAAAGAGGATCCCA+AGG | - | chr2_2:48335995-48336014 | Msa0254750:CDS | 40.0% | |
| TCATCATGGATCTCTTCCTT+GGG | + | chr2_2:48336014-48336033 | None:intergenic | 40.0% | |
| ATCATCATGGATCTCTTCCT+TGG | + | chr2_2:48336015-48336034 | None:intergenic | 40.0% | |
| ! | CTGCTTTGGCTTCCAACAAA+TGG | - | chr2_2:48331091-48331110 | Msa0254750:CDS | 45.0% |
| GCTTATAAGAGGACGTGACA+TGG | - | chr2_2:48331135-48331154 | Msa0254750:CDS | 45.0% | |
| AGCCACATCATTGGAGTCTT+TGG | + | chr2_2:48331320-48331339 | None:intergenic | 45.0% | |
| GAATTGCAACAAGCTTGAGG+AGG | - | chr2_2:48331375-48331394 | Msa0254750:CDS | 45.0% | |
| CAACAAGCTTGAGGAGGATT+TGG | - | chr2_2:48331381-48331400 | Msa0254750:CDS | 45.0% | |
| AAGCTTGAGGAGGATTTGGA+TGG | - | chr2_2:48331385-48331404 | Msa0254750:CDS | 45.0% | |
| ! | GTTCGACCCTGTAGGATTTT+TGG | + | chr2_2:48331440-48331459 | None:intergenic | 45.0% |
| TTTCTCTTGTTCGACCCTGT+AGG | + | chr2_2:48331448-48331467 | None:intergenic | 45.0% | |
| ! | AATGTCACGAAACTGGTCTG+GGG | - | chr2_2:48331623-48331642 | Msa0254750:intron | 45.0% |
| TTTCCGCTATCGAACGACTT+GGG | + | chr2_2:48332015-48332034 | None:intergenic | 45.0% | |
| ATTTCCGCTATCGAACGACT+TGG | + | chr2_2:48332016-48332035 | None:intergenic | 45.0% | |
| ATGTCTAGACTTGAGCGTGA+GGG | + | chr2_2:48332207-48332226 | None:intergenic | 45.0% | |
| TGTGATGTCTTCGTCACTTG+TGG | - | chr2_2:48333377-48333396 | Msa0254750:intron | 45.0% | |
| AATATCCTTGGTGGGGAGTT+TGG | + | chr2_2:48333420-48333439 | None:intergenic | 45.0% | |
| AAACTCCCCACCAAGGATAT+TGG | - | chr2_2:48333419-48333438 | Msa0254750:intron | 45.0% | |
| AACTCCCCACCAAGGATATT+GGG | - | chr2_2:48333420-48333439 | Msa0254750:intron | 45.0% | |
| ATAGCCCCAATATCCTTGGT+GGG | + | chr2_2:48333428-48333447 | None:intergenic | 45.0% | |
| GGGGCTATGATACGATTCTA+TGG | - | chr2_2:48333440-48333459 | Msa0254750:intron | 45.0% | |
| GATACGATTCTATGGAGGAG+TGG | - | chr2_2:48333448-48333467 | Msa0254750:intron | 45.0% | |
| TTCTATGGAGGAGTGGATCT+TGG | - | chr2_2:48333455-48333474 | Msa0254750:intron | 45.0% | |
| GGAAGTGAGAACTCACACTT+AGG | - | chr2_2:48333494-48333513 | Msa0254750:intron | 45.0% | |
| CACACTTAGGGAGAGATTGT+TGG | - | chr2_2:48333507-48333526 | Msa0254750:intron | 45.0% | |
| CTTGTCAGTACCCTTTCGTT+AGG | - | chr2_2:48334936-48334955 | Msa0254750:intron | 45.0% | |
| !! | CGCCGCTAAGTCTTTTTAAG+TGG | - | chr2_2:48335583-48335602 | Msa0254750:intron | 45.0% |
| !! | AAATAAAAATAAAAATCAAT+TGG | + | chr2_2:48332926-48332945 | None:intergenic | 5.0% |
| !! | TATATTAAAATTACAAAAAT+TGG | + | chr2_2:48335429-48335448 | None:intergenic | 5.0% |
| !!! | ATAATTATTTAAATTTTGAA+AGG | + | chr2_2:48335672-48335691 | None:intergenic | 5.0% |
| CGCCAAAGACTCCAATGATG+TGG | - | chr2_2:48331315-48331334 | Msa0254750:CDS | 50.0% | |
| TGTCTAGACTTGAGCGTGAG+GGG | + | chr2_2:48332206-48332225 | None:intergenic | 50.0% | |
| GATGTCTAGACTTGAGCGTG+AGG | + | chr2_2:48332208-48332227 | None:intergenic | 50.0% | |
| CACGCTCAAGTCTAGACATC+TGG | - | chr2_2:48332208-48332227 | Msa0254750:intron | 50.0% | |
| ! | AAGTCTAGACATCTGGAGCG+TGG | - | chr2_2:48332215-48332234 | Msa0254750:intron | 50.0% |
| ACTCCCCACCAAGGATATTG+GGG | - | chr2_2:48333421-48333440 | Msa0254750:intron | 50.0% | |
| TAGCCCCAATATCCTTGGTG+GGG | + | chr2_2:48333427-48333446 | None:intergenic | 50.0% | |
| CATAGCCCCAATATCCTTGG+TGG | + | chr2_2:48333429-48333448 | None:intergenic | 50.0% | |
| GGAGGAGTGGATCTTGGTAT+TGG | - | chr2_2:48333461-48333480 | Msa0254750:intron | 50.0% | |
| AGTCCCACATCGCCTATAAG+TGG | - | chr2_2:48333550-48333569 | Msa0254750:intron | 50.0% | |
| GTCCCACATCGCCTATAAGT+GGG | - | chr2_2:48333551-48333570 | Msa0254750:intron | 50.0% | |
| CACCCACTTATAGGCGATGT+GGG | + | chr2_2:48333556-48333575 | None:intergenic | 50.0% | |
| TCACCCACTTATAGGCGATG+TGG | + | chr2_2:48333557-48333576 | None:intergenic | 50.0% | |
| AAGAGAACCCTCCAGTGTAC+CGG | - | chr2_2:48335805-48335824 | Msa0254750:CDS | 50.0% | |
| ATGTAGTCCGGTACACTGGA+GGG | + | chr2_2:48335815-48335834 | None:intergenic | 50.0% | |
| TATGTAGTCCGGTACACTGG+AGG | + | chr2_2:48335816-48335835 | None:intergenic | 50.0% | |
| TGCTGGAGATCTTGTCCGTG+AGG | - | chr2_2:48331252-48331271 | Msa0254750:CDS | 55.0% | |
| CGACCCAAGTCGTTCGATAG+CGG | - | chr2_2:48332009-48332028 | Msa0254750:intron | 55.0% | |
| GTCTAGACTTGAGCGTGAGG+GGG | + | chr2_2:48332205-48332224 | None:intergenic | 55.0% | |
| TGTCTCCAAACTCCCCACCA+AGG | - | chr2_2:48333412-48333431 | Msa0254750:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 48331057 | 48336181 | 48331057 | ID=Msa0254750;Name=Msa0254750 |
| chr2_2 | mRNA | 48331057 | 48336181 | 48331057 | ID=Msa0254750-mRNA-1;Parent=Msa0254750;Name=Msa0254750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=25|1|0.66|1|0|0.66|3|0|311 |
| chr2_2 | exon | 48331057 | 48331501 | 48331057 | ID=Msa0254750-mRNA-1:exon:14581;Parent=Msa0254750-mRNA-1 |
| chr2_2 | exon | 48331877 | 48331981 | 48331877 | ID=Msa0254750-mRNA-1:exon:14580;Parent=Msa0254750-mRNA-1 |
| chr2_2 | exon | 48335771 | 48336181 | 48335771 | ID=Msa0254750-mRNA-1:exon:14579;Parent=Msa0254750-mRNA-1 |
| chr2_2 | five_prime_UTR | 48336157 | 48336181 | 48336157 | ID=Msa0254750-mRNA-1:five_prime_utr;Parent=Msa0254750-mRNA-1 |
| chr2_2 | CDS | 48335771 | 48336156 | 48335771 | ID=Msa0254750-mRNA-1:cds;Parent=Msa0254750-mRNA-1 |
| chr2_2 | CDS | 48331877 | 48331981 | 48331877 | ID=Msa0254750-mRNA-1:cds;Parent=Msa0254750-mRNA-1 |
| chr2_2 | CDS | 48331057 | 48331501 | 48331057 | ID=Msa0254750-mRNA-1:cds;Parent=Msa0254750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
