AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258230 MtrunA17_Chr2g0320741 81.530 1294 115 5 1 1171 432 1724 0.0 2136
Msa0258230 MtrunA17_Chr2g0320731 86.593 1171 100 4 1 1171 415 1528 0.0 2002
Msa0258230 MtrunA17_Chr4g0027391 50.935 909 380 21 118 973 672 1567 0.0 791
Msa0258230 MtrunA17_Chr4g0027391 61.151 139 47 1 1 132 448 586 8.70e-47 184
Msa0258230 MtrunA17_Chr4g0038871 27.130 763 445 23 3 679 733 1470 3.16e-58 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258230 AT5G22760.3 42.994 942 497 17 1 908 170 1105 0.0 690
Msa0258230 AT5G22760.3 32.824 262 154 6 915 1170 1045 1290 1.72e-22 105
Msa0258230 AT5G22760.1 42.994 942 497 17 1 908 445 1380 0.0 690
Msa0258230 AT5G22760.1 32.824 262 154 6 915 1170 1320 1565 2.32e-22 105
Msa0258230 AT5G35210.1 42.677 949 490 25 1 908 443 1378 0.0 675
Msa0258230 AT5G35210.1 30.038 263 138 11 914 1168 1312 1536 1.58e-16 86.3
Msa0258230 AT5G35210.2 42.677 949 490 25 1 908 443 1378 0.0 674
Msa0258230 AT5G35210.2 30.451 266 139 10 914 1171 1312 1539 5.51e-19 94.0
Msa0258230 AT5G22760.2 45.038 655 330 11 1 629 445 1095 1.33e-157 499
Msa0258230 AT5G12400.1 27.495 531 344 14 174 684 878 1387 1.65e-45 180

Find 256 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGCTTCTTGTCAGAATT+TGG 0.130844 2_2:+54459054 None:intergenic
TCCCCAAGTTAACACCTTTA+TGG 0.133420 2_2:+54459373 None:intergenic
TTCAACATATATCATATATT+TGG 0.138739 2_2:-54458863 Msa0258230:CDS
TAAACTTATAGAATGCATTT+TGG 0.174551 2_2:+54455016 None:intergenic
AGGTGGTATGAGGAAAATTT+TGG 0.189884 2_2:-54457874 Msa0258230:CDS
TCATCTATCTTTGCACTCTC+TGG 0.218644 2_2:+54459402 None:intergenic
CTTGTCAGATTTGTCGCATT+TGG 0.218826 2_2:-54455204 Msa0258230:CDS
AAAATACAGGCATTGATTTC+AGG 0.218940 2_2:-54456451 Msa0258230:CDS
AGTTGTCAAATTTGTTTAAT+AGG 0.227435 2_2:-54460087 Msa0258230:five_prime_UTR
TTTGCACCAGGTTCGATATC+TGG 0.232068 2_2:-54457668 Msa0258230:intron
AAAATGCATTCTATAAGTTT+AGG 0.235167 2_2:-54455014 Msa0258230:three_prime_UTR
GCCGAGCACAGAAAATATTT+TGG 0.236187 2_2:+54456188 None:intergenic
TGCATCTGCTGCTGCTAGTT+TGG 0.236720 2_2:-54459199 Msa0258230:CDS
AGCAAGACCGGAAAGTATTT+TGG 0.247537 2_2:+54458921 None:intergenic
ATTCCTTCTCCACTCCTTAC+AGG 0.247869 2_2:+54458898 None:intergenic
GCACGTGGAACATCTCTTAA+AGG 0.249792 2_2:-54459912 Msa0258230:CDS
AATCCTCTTGGGGTATTATA+TGG 0.256435 2_2:-54456490 Msa0258230:CDS
CAGGGGCGTGAAGAGCTTTC+TGG 0.258245 2_2:+54459450 None:intergenic
TGCCAGAAGGAGAGAAGTTT+TGG 0.263755 2_2:-54457441 Msa0258230:CDS
GGGCAATGCCATGGCCCTTC+TGG 0.266388 2_2:+54459969 None:intergenic
ATTATGATTCTCAGTCATTC+TGG 0.270653 2_2:-54454936 Msa0258230:three_prime_UTR
TGCATCACAGCTTGCACTTC+AGG 0.271164 2_2:-54457769 Msa0258230:intron
GGTATTTGATCATCACATTT+AGG 0.277967 2_2:+54456599 None:intergenic
TCTCTGCATCTAACTCTAAC+TGG 0.283474 2_2:+54455905 None:intergenic
TTGAGGAAGCTGACGTGTTT+GGG 0.295577 2_2:-54455384 Msa0258230:CDS
AGTTTACATGGTTTAGTAGA+TGG 0.296450 2_2:-54458835 Msa0258230:CDS
AAAACGCATTCCTTTATATC+TGG 0.299845 2_2:-54457410 Msa0258230:CDS
AATGTATGACTGAGGTTTAT+AGG 0.301760 2_2:+54459248 None:intergenic
CCGAGATCTACCAGGGAAAA+TGG 0.306785 2_2:-54456578 Msa0258230:CDS
TAACAGCTTCACGCTTCTTT+TGG 0.309068 2_2:-54459077 Msa0258230:CDS
GGGGACAATAATAGCTCTTC+TGG 0.310856 2_2:-54455619 Msa0258230:CDS
GATCAGATCTATATGGATTA+TGG 0.312108 2_2:+54456363 None:intergenic
TCTGGAGAAGATTCTGGTTC+TGG 0.312256 2_2:-54455850 Msa0258230:CDS
AACCATTCTGGAGAAGATTC+TGG 0.315015 2_2:-54455856 Msa0258230:CDS
AAATGCATTCTATAAGTTTA+GGG 0.329046 2_2:-54455013 Msa0258230:three_prime_UTR
CCCGTGAAGGAATGTGCTTT+TGG 0.333523 2_2:+54457491 None:intergenic
ATAGTTTGAAACTGAGTAAA+AGG 0.334104 2_2:-54454901 Msa0258230:three_prime_UTR
TTGTTGACTGTATATTTGAT+AGG 0.339677 2_2:+54458468 None:intergenic
TGCTCGGCTTCAAATGTTGC+AGG 0.340419 2_2:-54456173 Msa0258230:CDS
TTTGAGGAAGCTGACGTGTT+TGG 0.341601 2_2:-54455385 Msa0258230:CDS
CTAGTAGTTGCACATTCTTC+AGG 0.342188 2_2:+54455319 None:intergenic
AACCAAAACTTCTCTCCTTC+TGG 0.344997 2_2:+54457439 None:intergenic
ATTGGAAGTGCGGGAATTGC+AGG 0.347807 2_2:-54455132 Msa0258230:CDS
AATTGTTGATAATGAATTCA+TGG 0.348521 2_2:-54455470 Msa0258230:CDS
TTTAAAAGTAAGGTACTGTT+TGG 0.348914 2_2:+54456656 None:intergenic
AACGGTGACCAGACTGGCTT+TGG 0.353733 2_2:-54459318 Msa0258230:CDS
CTTAAAGGGGCTGAAACATT+TGG 0.356550 2_2:-54459897 Msa0258230:CDS
AATTTGTTTAATAGGCTTGC+CGG 0.356593 2_2:-54460079 Msa0258230:five_prime_UTR
GCATGGCAATGTTACAATAC+TGG 0.360277 2_2:-54459479 Msa0258230:CDS
TAACATTGCCATGCAAATAC+TGG 0.371032 2_2:+54459488 None:intergenic
AAAGAAGCCGACAGCTGGTT+TGG 0.372152 2_2:-54457818 Msa0258230:CDS
GCTTCCAAGAGGAAGCATTC+TGG 0.374208 2_2:-54456069 Msa0258230:CDS
TACATTAGATCAGATCTATA+TGG 0.378673 2_2:+54456356 None:intergenic
TGCACTTTCCAAAGCCAGTC+TGG 0.379938 2_2:+54459310 None:intergenic
GAATGCAAAATAAATATGAT+TGG 0.385286 2_2:-54459945 Msa0258230:CDS
GACGTGTTTGGGGACTTGTC+AGG 0.386977 2_2:-54455373 Msa0258230:CDS
AGCTGCATTGCCAAAATTCA+TGG 0.390563 2_2:-54458388 Msa0258230:CDS
AATTTCAACACGGGATGAAA+TGG 0.392039 2_2:-54455575 Msa0258230:CDS
ACGTTCAAGCTTGCCTCAAT+TGG 0.395170 2_2:-54456405 Msa0258230:CDS
CATCTATCTTTGCACTCTCT+GGG 0.396216 2_2:+54459403 None:intergenic
CTGAACTTCTGCATCTAGAT+AGG 0.398993 2_2:-54455417 Msa0258230:CDS
ATTGAGCGTAACACCATCTC+TGG 0.400680 2_2:-54455688 Msa0258230:CDS
CACGTGGAACATCTCTTAAA+GGG 0.403694 2_2:-54459911 Msa0258230:CDS
CGTAACACCATCTCTGGGTC+AGG 0.405586 2_2:-54455682 Msa0258230:CDS
CACGTGCAAGAGAGACAATT+TGG 0.408089 2_2:-54457269 Msa0258230:CDS
CGTGTGTCCTTACTCTGATT+TGG 0.410763 2_2:-54456130 Msa0258230:CDS
TCCTCTGTTTCAAGCAAGAA+AGG 0.415204 2_2:-54458988 Msa0258230:CDS
CTCAATGCCTGCATCTGACT+CGG 0.415391 2_2:+54455705 None:intergenic
GCTAACAAGTTAGGGTTGTC+AGG 0.419821 2_2:+54459114 None:intergenic
AGCTCTCTGAAATACAGATT+TGG 0.419952 2_2:+54458407 None:intergenic
TTTGAAAGAGAAAACGGAAA+AGG 0.421203 2_2:+54455949 None:intergenic
CACAGTGATACATCTACTCT+TGG 0.422433 2_2:-54458537 Msa0258230:CDS
TTGATGAAATTGTTGGTCTC+TGG 0.423013 2_2:+54455284 None:intergenic
AGATCTGATCTAATGTATAT+AGG 0.429092 2_2:-54456350 Msa0258230:CDS
ATATATGATATATGTTGAAA+TGG 0.429392 2_2:+54458867 None:intergenic
AGGGGCGTGAAGAGCTTTCT+GGG 0.430293 2_2:+54459451 None:intergenic
GATGTTCCACGTGCAATTGT+TGG 0.430918 2_2:+54459921 None:intergenic
TTAGGAATTTCAGGGACATC+AGG 0.432353 2_2:+54457840 None:intergenic
AACAGTGGAGGATTGTTCTC+TGG 0.434548 2_2:+54455760 None:intergenic
AAAGGCGGTTGAATGCTATC+TGG 0.436718 2_2:-54457312 Msa0258230:CDS
GGGTTTAGATGTGTTCCGTT+TGG 0.438022 2_2:+54459423 None:intergenic
TTGCCATTTGATGAAATTGT+TGG 0.440243 2_2:+54455277 None:intergenic
CAAATCTGACAAGAGAGATC+GGG 0.446919 2_2:+54455214 None:intergenic
AAGAGGAAGCATTCTGGAGC+AGG 0.447046 2_2:-54456063 Msa0258230:CDS
AAGAATAACAATGAAAATAC+AGG 0.451684 2_2:-54456464 Msa0258230:CDS
TCGCATCTCAATGGCACAAA+AGG 0.452497 2_2:-54457330 Msa0258230:CDS
TTTCCGGTCTTGCTCCTGTA+AGG 0.455644 2_2:-54458912 Msa0258230:CDS
TGCTCCAGAATGCTTCCTCT+TGG 0.456090 2_2:+54456065 None:intergenic
CAAGAACTCAACATCTGTAT+TGG 0.458194 2_2:+54456742 None:intergenic
GTAACTAATTCTTGCACACT+AGG 0.459743 2_2:-54455346 Msa0258230:CDS
TCAACATTTGAAAGAGAAAA+CGG 0.460202 2_2:+54455943 None:intergenic
ATGATATATGTTGAAATGGT+AGG 0.460797 2_2:+54458871 None:intergenic
AGACCAACAATTTCATCAAA+TGG 0.461397 2_2:-54455280 Msa0258230:CDS
CCCTTTCTTGCTTGAAACAG+AGG 0.461674 2_2:+54458987 None:intergenic
ATAGATGAAGATAACCATAA+AGG 0.461989 2_2:-54459387 Msa0258230:CDS
AACATATATCATATATTTGG+AGG 0.463360 2_2:-54458860 Msa0258230:CDS
CATCATCTAGGCTTGGAGAT+TGG 0.465552 2_2:-54455150 Msa0258230:CDS
TCAGATGGATTGATCTGATT+CGG 0.466885 2_2:-54457636 Msa0258230:CDS
TTTGAACTTACACAAGTAAG+TGG 0.467593 2_2:+54459835 None:intergenic
AAAGCTATGGCGTAAACAAA+TGG 0.468151 2_2:-54458788 Msa0258230:CDS
TCCTAAAAGAAGCCGACAGC+TGG 0.468866 2_2:-54457823 Msa0258230:CDS
GACTGGGTGAAGCTGACGGA+TGG 0.470192 2_2:-54458585 Msa0258230:CDS
TTGAAAGAGAAAACGGAAAA+GGG 0.470887 2_2:+54455950 None:intergenic
CCTGGATTGAATCATCATCT+AGG 0.471386 2_2:-54455162 Msa0258230:CDS
TTATGGCACAAGTGACAAAC+AGG 0.474646 2_2:+54456380 None:intergenic
AATGCAAAATAAATATGATT+GGG 0.478506 2_2:-54459944 Msa0258230:CDS
GTTTACATGGTTTAGTAGAT+GGG 0.478985 2_2:-54458834 Msa0258230:CDS
AGCGCCGCCAAAATACTTTC+CGG 0.479851 2_2:-54458928 Msa0258230:CDS
AGAATCCTCTGAAGAAAGAA+TGG 0.481108 2_2:+54459176 None:intergenic
GGGACAATAATAGCTCTTCT+GGG 0.484019 2_2:-54455618 Msa0258230:CDS
GAAGCTGACGGATGGGTGGT+TGG 0.487703 2_2:-54458577 Msa0258230:CDS
AACCAGAATCTTCTCCAGAA+TGG 0.488880 2_2:+54455854 None:intergenic
AGCACATTCCTTCACGGGTA+AGG 0.488902 2_2:-54457486 Msa0258230:CDS
ACTGTTTGGAGGTTTGTTAA+CGG 0.491668 2_2:+54456670 None:intergenic
CTCTGCATCTAACTCTAACT+GGG 0.491728 2_2:+54455906 None:intergenic
AACCATAAAGGTGTTAACTT+GGG 0.492312 2_2:-54459375 Msa0258230:CDS
ACATTTGGTAATGATTTGTA+CGG 0.493256 2_2:-54459882 Msa0258230:CDS
CCTTTCGTAGAACATGACTT+TGG 0.493531 2_2:-54455526 Msa0258230:CDS
AAAAGTAAGGTACTGTTTGG+AGG 0.493844 2_2:+54456659 None:intergenic
TACTCTTATCTTTCCTGCTG+AGG 0.493978 2_2:-54455794 Msa0258230:CDS
TAACCATAAAGGTGTTAACT+TGG 0.495782 2_2:-54459376 Msa0258230:CDS
CCTAGATGATGATTCAATCC+AGG 0.496471 2_2:+54455162 None:intergenic
TGATATATGTTGAAATGGTA+GGG 0.497542 2_2:+54458872 None:intergenic
TTTGGCCATTCTTTCTTCAG+AGG 0.498642 2_2:-54459181 Msa0258230:CDS
ATGTGTTCCGTTTGGAACAC+AGG 0.499439 2_2:+54459431 None:intergenic
ACGTGTTTGGGGACTTGTCA+GGG 0.500045 2_2:-54455372 Msa0258230:CDS
ATTTCAACACGGGATGAAAT+GGG 0.501049 2_2:-54455574 Msa0258230:CDS
TTGCATTCTGGGCAATGCCA+TGG 0.501844 2_2:+54459960 None:intergenic
CAAACTAACGGTGACCAGAC+TGG 0.502353 2_2:-54459324 Msa0258230:CDS
GGTCGTGACACAAGGTGTAT+TGG 0.505078 2_2:-54460011 Msa0258230:five_prime_UTR
TCAAATATACAGTCAACAAA+TGG 0.507306 2_2:-54458464 Msa0258230:CDS
AGATAGGAGTAGTCACTTTG+AGG 0.511505 2_2:-54455401 Msa0258230:CDS
GCCAAAAGCACATTCCTTCA+CGG 0.513228 2_2:-54457492 Msa0258230:CDS
TATTTGGAGGAAAGTTTACA+TGG 0.513514 2_2:-54458847 Msa0258230:CDS
GGTTTAAAATGCCTCGTCGT+TGG 0.514313 2_2:+54455646 None:intergenic
ATCAGTTCAGCATCTGAAAG+AGG 0.514610 2_2:+54455736 None:intergenic
TATAACCTCCAGGATGGAAA+AGG 0.515912 2_2:-54457607 Msa0258230:CDS
AATGGTCAGAAAACTTTGGC+TGG 0.517919 2_2:-54458446 Msa0258230:CDS
AACAAATGGTCAGAAAACTT+TGG 0.518246 2_2:-54458450 Msa0258230:CDS
ACTGGGTGAAGCTGACGGAT+GGG 0.518335 2_2:-54458584 Msa0258230:CDS
AAACAGAGGATTTACAAGAA+AGG 0.519355 2_2:+54459001 None:intergenic
AGATTCTGGTTCTGGAACAC+TGG 0.523411 2_2:-54455842 Msa0258230:CDS
TTGCGCACCAAATCAGAGTA+AGG 0.526684 2_2:+54456123 None:intergenic
TGACAAACAGGTTCCAATTG+AGG 0.527183 2_2:+54456392 None:intergenic
ATCAAATACCGAGATCTACC+AGG 0.527230 2_2:-54456586 Msa0258230:CDS
AGGTTCTAGTTCTGAAACAC+TGG 0.527634 2_2:-54456043 Msa0258230:CDS
GAGCAAGTTGTAGAGCAGTC+AGG 0.527693 2_2:-54456099 Msa0258230:CDS
GCTAAAGAAAGTACTTCTGA+AGG 0.530306 2_2:-54456429 Msa0258230:CDS
ACAAATCTGACAAGAGAGAT+CGG 0.531448 2_2:+54455213 None:intergenic
ATGGGGAGGTTATAAGAGAG+AGG 0.532970 2_2:-54459035 Msa0258230:CDS
GCTTCAAATGTTGCAGGTGT+CGG 0.534644 2_2:-54456167 Msa0258230:CDS
GGCTTGGAGATTGGAAGTGC+GGG 0.535417 2_2:-54455141 Msa0258230:CDS
GGTTTAGCAACATCCTCAGC+AGG 0.538843 2_2:+54455781 None:intergenic
TCTGGGCAACAGGTGGTATG+AGG 0.539332 2_2:-54457884 Msa0258230:intron
GCAATCTTCCTTACCCGTGA+AGG 0.539605 2_2:+54457478 None:intergenic
TCACGCCCCTGTGTTCCAAA+CGG 0.541301 2_2:-54459438 Msa0258230:CDS
ACTCCTTACAGGAGCAAGAC+CGG 0.541372 2_2:+54458909 None:intergenic
TCAATGCCTGCATCTGACTC+GGG 0.541758 2_2:+54455706 None:intergenic
TTATAAGAGAGAGGTGTGCC+TGG 0.543107 2_2:-54459026 Msa0258230:CDS
CAAATTCTGACAAGAAGCAT+GGG 0.543135 2_2:-54459053 Msa0258230:CDS
CTCAAGTGCAGTGTATGTAA+AGG 0.543332 2_2:-54457074 Msa0258230:intron
CATTTGGTAATGATTTGTAC+GGG 0.543809 2_2:-54459881 Msa0258230:CDS
ACAGAACCCGAGTCAGATGC+AGG 0.545235 2_2:-54455712 Msa0258230:CDS
CGAGTCAGACACATGGCCCT+CGG 0.545665 2_2:+54459149 None:intergenic
ATTGAATCATCATCTAGGCT+TGG 0.545796 2_2:-54455157 Msa0258230:CDS
TTACTCTGATTTGGTGCGCA+AGG 0.548761 2_2:-54456121 Msa0258230:CDS
TTCAGAGGATTCTAGATCCG+AGG 0.548866 2_2:-54459166 Msa0258230:CDS
TGTATATACCAGAAGGGCCA+TGG 0.551111 2_2:-54459977 Msa0258230:CDS
CCAAATTCTGACAAGAAGCA+TGG 0.551321 2_2:-54459054 Msa0258230:CDS
GTGAAAACTATAGAAAGCTA+TGG 0.552887 2_2:-54458801 Msa0258230:CDS
CTGAAGCCCTGACCCAGAGA+TGG 0.554873 2_2:+54455675 None:intergenic
TGCAGAGAAGTCACACTCAC+AGG 0.556718 2_2:-54455890 Msa0258230:CDS
TACATTAATAACTATATGCA+TGG 0.557516 2_2:-54459231 Msa0258230:CDS
ATGGCGTAAACAAATGGAAA+GGG 0.557886 2_2:-54458782 Msa0258230:CDS
TGTAGAGCAGTCAGGCTCAC+GGG 0.558134 2_2:-54456091 Msa0258230:CDS
ACTTGAATATCGCATCTCAA+TGG 0.559273 2_2:-54457339 Msa0258230:CDS
CCAAAAGCACATTCCTTCAC+GGG 0.561179 2_2:-54457491 Msa0258230:CDS
CGAACTAGATCATTCTAGTC+CGG 0.563672 2_2:+54460060 None:intergenic
TTTGTACTCCAGTATTTGCA+TGG 0.566279 2_2:-54459496 Msa0258230:CDS
TGGCGACTGGGTGAAGCTGA+CGG 0.566541 2_2:-54458589 Msa0258230:CDS
CCTCTGTTTCAAGCAAGAAA+GGG 0.567576 2_2:-54458987 Msa0258230:CDS
ATGGATTGATCTGATTCGGC+CGG 0.571970 2_2:-54457632 Msa0258230:CDS
AACATCTGTATTGGTAGAGA+AGG 0.572034 2_2:+54456751 None:intergenic
AGTGCGGGAATTGCAGGGAA+TGG 0.573735 2_2:-54455126 Msa0258230:CDS
TATAAGATGTATATACCAGA+AGG 0.575010 2_2:-54459984 Msa0258230:exon
ACCATAAAGGTGTTAACTTG+GGG 0.575173 2_2:-54459374 Msa0258230:CDS
AATTGTCTCTCTTGCACGTG+AGG 0.575778 2_2:+54457272 None:intergenic
TTTCCATATAATACCCCAAG+AGG 0.576130 2_2:+54456487 None:intergenic
TTGTAGAGCAGTCAGGCTCA+CGG 0.579594 2_2:-54456092 Msa0258230:CDS
TGAGGAAGCTGACGTGTTTG+GGG 0.579738 2_2:-54455383 Msa0258230:CDS
TATGGCGTAAACAAATGGAA+AGG 0.581494 2_2:-54458783 Msa0258230:CDS
TGCATTTCTACTCATTTCAA+CGG 0.582627 2_2:+54457788 None:intergenic
CAAATCAGAGTAAGGACACA+CGG 0.583488 2_2:+54456131 None:intergenic
TGTGTTCCGTTTGGAACACA+GGG 0.584175 2_2:+54459432 None:intergenic
TTGTTCAGAAACAGCCTCTG+AGG 0.584275 2_2:+54455981 None:intergenic
TGTTCAGAAACAGCCTCTGA+GGG 0.584468 2_2:+54455982 None:intergenic
ACCCATATACACAAAATCAC+TGG 0.584611 2_2:+54459275 None:intergenic
ATGGCAATGTTCATAAGTGT+CGG 0.586064 2_2:-54455261 Msa0258230:CDS
TGGTCACCGTTAGTTTGCAA+AGG 0.587064 2_2:+54459330 None:intergenic
TCGGCCGGAGTATAACCTCC+AGG 0.589135 2_2:-54457617 Msa0258230:CDS
TCAGAGGATTCTAGATCCGA+GGG 0.595112 2_2:-54459165 Msa0258230:CDS
CTAGATGATGATTCAATCCA+GGG 0.596610 2_2:+54455163 None:intergenic
GCATGCTGAAATTTCAACAC+GGG 0.598480 2_2:-54455584 Msa0258230:CDS
GAAATAGAAGAAGTGCCAGA+AGG 0.599315 2_2:-54457454 Msa0258230:CDS
GGTCAGAAAACTTTGGCTGG+TGG 0.600294 2_2:-54458443 Msa0258230:CDS
GCTCCTGTAAGGAGTGGAGA+AGG 0.600910 2_2:-54458901 Msa0258230:CDS
CCAAAGTCATGTTCTACGAA+AGG 0.601862 2_2:+54455526 None:intergenic
TTGGAAGTGCGGGAATTGCA+GGG 0.602528 2_2:-54455131 Msa0258230:CDS
GCTCTCAAAAGCTATGGCAT+AGG 0.604268 2_2:+54457513 None:intergenic
CCGGAGTATAACCTCCAGGA+TGG 0.608663 2_2:-54457613 Msa0258230:CDS
CATCTCAATGGCACAAAAGG+CGG 0.612583 2_2:-54457327 Msa0258230:CDS
AGGCTTGGAGATTGGAAGTG+CGG 0.612618 2_2:-54455142 Msa0258230:CDS
CTAAAGAAAGTACTTCTGAA+GGG 0.613552 2_2:-54456428 Msa0258230:CDS
GGTCTTGCTCCTGTAAGGAG+TGG 0.615571 2_2:-54458907 Msa0258230:CDS
CCATCCTGGAGGTTATACTC+CGG 0.616215 2_2:+54457613 None:intergenic
TTCACAGCAAGTGCTCACCC+TGG 0.616239 2_2:-54455180 Msa0258230:CDS
CTTTATGTTACTAAATGATG+TGG 0.617200 2_2:+54458759 None:intergenic
ACTGGCTTTGGAAAGTGCAA+AGG 0.618195 2_2:-54459306 Msa0258230:CDS
TCTGCATCTAACTCTAACTG+GGG 0.619601 2_2:+54455907 None:intergenic
GTCAGAAAAGCAGCTCGGCA+AGG 0.621455 2_2:-54458366 Msa0258230:intron
GAATGATCTAGTTCGTGCGC+CGG 0.623370 2_2:-54460052 Msa0258230:five_prime_UTR
AAATCTGACAAGAGAGATCG+GGG 0.623610 2_2:+54455215 None:intergenic
GGGTGAAGCTGACGGATGGG+TGG 0.625819 2_2:-54458581 Msa0258230:CDS
GCAGAAGTTCAGAAGAAGAG+AGG 0.630129 2_2:+54455428 None:intergenic
ATCTACTCTTGGAACAACAC+AGG 0.631822 2_2:-54458526 Msa0258230:CDS
GCGGTTGAATGCTATCTGGA+AGG 0.633173 2_2:-54457308 Msa0258230:CDS
CAGCTCTCCAAACCAGCTGT+CGG 0.633372 2_2:+54457811 None:intergenic
GTAACACCATCTCTGGGTCA+GGG 0.641968 2_2:-54455681 Msa0258230:CDS
TTGAGCGTAACACCATCTCT+GGG 0.644369 2_2:-54455687 Msa0258230:CDS
AGTCTGCCTTTGCAAACTAA+CGG 0.646619 2_2:-54459336 Msa0258230:CDS
ATGATAACATTGTTTGCATG+TGG 0.651854 2_2:+54456718 None:intergenic
TCATGGTCAGAAAAGCAGCT+CGG 0.656685 2_2:-54458371 Msa0258230:CDS
TAGTTATTAATGTATGACTG+AGG 0.657216 2_2:+54459240 None:intergenic
GGACAATAATAGCTCTTCTG+GGG 0.667104 2_2:-54455617 Msa0258230:CDS
ACGTGGAACATCTCTTAAAG+GGG 0.668630 2_2:-54459910 Msa0258230:CDS
TCAAATACCGAGATCTACCA+GGG 0.669012 2_2:-54456585 Msa0258230:CDS
TTGTCAGGTAATTGTCACGA+GGG 0.669304 2_2:-54456791 Msa0258230:intron
GCATCTGAAAGAGGAAACAG+TGG 0.669788 2_2:+54455745 None:intergenic
GTAGTAATTATGACAAAACT+CGG 0.670129 2_2:+54459578 None:intergenic
CAGGCTCACGGGCTTCCAAG+AGG 0.671136 2_2:-54456080 Msa0258230:CDS
TTCTGACAAGAAGCATGGGG+AGG 0.672710 2_2:-54459049 Msa0258230:CDS
GGATTTACAAGAAAGGCACC+AGG 0.673701 2_2:+54459008 None:intergenic
TTTGTCAGGTAATTGTCACG+AGG 0.673956 2_2:-54456792 Msa0258230:intron
CTTTCTTCGAGTCAGACACA+TGG 0.674082 2_2:+54459142 None:intergenic
GGCATGCTGAAATTTCAACA+CGG 0.678488 2_2:-54455585 Msa0258230:CDS
ATGCAAATACTGGAGTACAA+AGG 0.681082 2_2:+54459498 None:intergenic
ATAAGATGTATATACCAGAA+GGG 0.681967 2_2:-54459983 Msa0258230:exon
TCTGAAAGAGGAAACAGTGG+AGG 0.684201 2_2:+54455748 None:intergenic
GACAATAATAGCTCTTCTGG+GGG 0.687127 2_2:-54455616 Msa0258230:CDS
AAATTCTGACAAGAAGCATG+GGG 0.701028 2_2:-54459052 Msa0258230:CDS
AAATCAGAGTAAGGACACAC+GGG 0.703859 2_2:+54456132 None:intergenic
ATTGGGCCAACAATTGCACG+TGG 0.707623 2_2:-54459927 Msa0258230:CDS
TTCAGAAAATACCAACGACG+AGG 0.742829 2_2:-54455657 Msa0258230:CDS
CAAGAGTAGATGTATCACTG+TGG 0.752247 2_2:+54458538 None:intergenic
GTGTTCCGTTTGGAACACAG+GGG 0.784945 2_2:+54459433 None:intergenic
AATCTGACAAGAGAGATCGG+GGG 0.803545 2_2:+54455216 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTTAAAGTTC+GGG - chr2_2:54456160-54456179 Msa0258230:CDS 10.0%
!! AATGCAAAATAAATATGATT+GGG - chr2_2:54454924-54454943 Msa0258230:three_prime_UTR 15.0%
!! ATATATGATATATGTTGAAA+TGG + chr2_2:54456004-54456023 None:intergenic 15.0%
!! TTCAACATATATCATATATT+TGG - chr2_2:54456005-54456024 Msa0258230:CDS 15.0%
!!! CTTTGAAACAATAAATAAAA+AGG + chr2_2:54456630-54456649 None:intergenic 15.0%
!! GGTTAAAACAATAATTTAAA+AGG - chr2_2:54456782-54456801 Msa0258230:CDS 15.0%
!! GGTTAAAAGAATAATTTAAA+AGG - chr2_2:54456840-54456859 Msa0258230:intron 15.0%
!! AAAGAATAATTTAAAAGGAA+CGG - chr2_2:54456845-54456864 Msa0258230:intron 15.0%
!! TACATCTTATAATAATCAAA+GGG + chr2_2:54457128-54457147 None:intergenic 15.0%
!!! TTTTATTTTTGTTTGTGTTT+TGG - chr2_2:54458023-54458042 Msa0258230:intron 15.0%
!!! TCATATTTATTTTGCATTCT+GGG + chr2_2:54454922-54454941 None:intergenic 20.0%
!!! ATCATATTTATTTTGCATTC+TGG + chr2_2:54454923-54454942 None:intergenic 20.0%
!! GAATGCAAAATAAATATGAT+TGG - chr2_2:54454923-54454942 Msa0258230:three_prime_UTR 20.0%
!!! TCTCTTATTCTTTTTACTTT+TGG - chr2_2:54455183-54455202 Msa0258230:CDS 20.0%
!! TACATTAATAACTATATGCA+TGG - chr2_2:54455637-54455656 Msa0258230:CDS 20.0%
!! AACATATATCATATATTTGG+AGG - chr2_2:54456008-54456027 Msa0258230:CDS 20.0%
!!! TTACTTACTTTTAGTAAAAG+TGG + chr2_2:54456135-54456154 None:intergenic 20.0%
!!! TGTAATTATATGTTTTTCTG+CGG - chr2_2:54456203-54456222 Msa0258230:CDS 20.0%
!!! ATGTTTTTACTATGATTAAC+TGG - chr2_2:54456540-54456559 Msa0258230:CDS 20.0%
!!! CTTTTTAAATTGACGTTTTA+AGG + chr2_2:54456755-54456774 None:intergenic 20.0%
!! CTTAAAACGTCAATTTAAAA+AGG - chr2_2:54456753-54456772 Msa0258230:CDS 20.0%
!! GGTTAAAAGAATAATTTGAA+AGG - chr2_2:54456811-54456830 Msa0258230:intron 20.0%
!! AAATTTCAAAATTCTATCAG+TGG + chr2_2:54456915-54456934 None:intergenic 20.0%
!!! TGATTGTGTAAAATTTGTTT+GGG - chr2_2:54456938-54456957 Msa0258230:intron 20.0%
!! ACATCTTATAATAATCAAAG+GGG + chr2_2:54457127-54457146 None:intergenic 20.0%
!! GTACATCTTATAATAATCAA+AGG + chr2_2:54457129-54457148 None:intergenic 20.0%
!! TAAGGGAAAGAAAAAAAAAA+CGG + chr2_2:54457755-54457774 None:intergenic 20.0%
!! TACTATAGTAAATAGATAGA+AGG + chr2_2:54457835-54457854 None:intergenic 20.0%
!!! TATTCTGTTCTAATGTTTTT+GGG - chr2_2:54457853-54457872 Msa0258230:CDS 20.0%
!!! TTTAACATTTTGTTGCATAT+GGG - chr2_2:54458046-54458065 Msa0258230:intron 20.0%
!! AAGAATAACAATGAAAATAC+AGG - chr2_2:54458404-54458423 Msa0258230:CDS 20.0%
!! AACTAGAGAAAAAAAACTTA+CGG + chr2_2:54458559-54458578 None:intergenic 20.0%
!!! AATTGTTGATAATGAATTCA+TGG - chr2_2:54459398-54459417 Msa0258230:CDS 20.0%
!!! AAACTTATAGAATGCATTTT+GGG + chr2_2:54459854-54459873 None:intergenic 20.0%
!!! TAAACTTATAGAATGCATTT+TGG + chr2_2:54459855-54459874 None:intergenic 20.0%
!! AAAATGCATTCTATAAGTTT+AGG - chr2_2:54459854-54459873 Msa0258230:CDS 20.0%
!! AAATGCATTCTATAAGTTTA+GGG - chr2_2:54459855-54459874 Msa0258230:CDS 20.0%
! TATAAGATGTATATACCAGA+AGG - chr2_2:54454884-54454903 Msa0258230:three_prime_UTR 25.0%
! ATAAGATGTATATACCAGAA+GGG - chr2_2:54454885-54454904 Msa0258230:three_prime_UTR 25.0%
!!! ACATTTGGTAATGATTTGTA+CGG - chr2_2:54454986-54455005 Msa0258230:three_prime_UTR 25.0%
!!! AACTCCTTCATTTGTTATTT+CGG - chr2_2:54455073-54455092 Msa0258230:three_prime_UTR 25.0%
! TTATCCGAAATAACAAATGA+AGG + chr2_2:54455080-54455099 None:intergenic 25.0%
! GTAGTAATTATGACAAAACT+CGG + chr2_2:54455293-54455312 None:intergenic 25.0%
! ATAGATGAAGATAACCATAA+AGG - chr2_2:54455481-54455500 Msa0258230:CDS 25.0%
! TAGTTATTAATGTATGACTG+AGG + chr2_2:54455631-54455650 None:intergenic 25.0%
! TGATATATGTTGAAATGGTA+GGG + chr2_2:54455999-54456018 None:intergenic 25.0%
! ATGATATATGTTGAAATGGT+AGG + chr2_2:54456000-54456019 None:intergenic 25.0%
!! CTATAGTTTTCACTAAGAAA+GGG + chr2_2:54456060-54456079 None:intergenic 25.0%
!! TCTATAGTTTTCACTAAGAA+AGG + chr2_2:54456061-54456080 None:intergenic 25.0%
! CTTTATGTTACTAAATGATG+TGG + chr2_2:54456112-54456131 None:intergenic 25.0%
!! GTAATTATATGTTTTTCTGC+GGG - chr2_2:54456204-54456223 Msa0258230:CDS 25.0%
!! TTGTTGACTGTATATTTGAT+AGG + chr2_2:54456403-54456422 None:intergenic 25.0%
! TCAAATATACAGTCAACAAA+TGG - chr2_2:54456404-54456423 Msa0258230:CDS 25.0%
! AAATGACGCTTAAAAATGAA+TGG + chr2_2:54456589-54456608 None:intergenic 25.0%
! TATTGTTTCAAAGTTCAAAG+TGG - chr2_2:54456637-54456656 Msa0258230:CDS 25.0%
! AACGTCAATTTAAAAAGGAA+CGG - chr2_2:54456758-54456777 Msa0258230:CDS 25.0%
! CAATAATTTAAAAGGAACAG+AGG - chr2_2:54456790-54456809 Msa0258230:intron 25.0%
! GTAGTAAATAAATTGATGCT+TGG - chr2_2:54456870-54456889 Msa0258230:intron 25.0%
!! GTGATTGTGTAAAATTTGTT+TGG - chr2_2:54456937-54456956 Msa0258230:intron 25.0%
! TTATGACAAAAAGTTTGCAA+AGG - chr2_2:54457323-54457342 Msa0258230:CDS 25.0%
! TATGACAAAAAGTTTGCAAA+GGG - chr2_2:54457324-54457343 Msa0258230:CDS 25.0%
!! TACTCTTTTACCAGATATAA+AGG + chr2_2:54457471-54457490 None:intergenic 25.0%
! TGTTAAAAGAAAAGAAGGAA+GGG + chr2_2:54457713-54457732 None:intergenic 25.0%
! ATAGGTGTTAAAAGAAAAGA+AGG + chr2_2:54457718-54457737 None:intergenic 25.0%
!! GTATTCTGTTCTAATGTTTT+TGG - chr2_2:54457852-54457871 Msa0258230:CDS 25.0%
!! GTTTAACATTTTGTTGCATA+TGG - chr2_2:54458045-54458064 Msa0258230:intron 25.0%
!!! TTTAAAAGTAAGGTACTGTT+TGG + chr2_2:54458215-54458234 None:intergenic 25.0%
!!! AACAGTACCTTACTTTTAAA+AGG - chr2_2:54458215-54458234 Msa0258230:intron 25.0%
!!! ACAGTACCTTACTTTTAAAA+GGG - chr2_2:54458216-54458235 Msa0258230:intron 25.0%
! TACATTAGATCAGATCTATA+TGG + chr2_2:54458515-54458534 None:intergenic 25.0%
! AGATCTGATCTAATGTATAT+AGG - chr2_2:54458518-54458537 Msa0258230:CDS 25.0%
! ACTAGAGAAAAAAAACTTAC+GGG + chr2_2:54458558-54458577 None:intergenic 25.0%
! TATTATCTAATCTTTGCATG+TGG - chr2_2:54458612-54458631 Msa0258230:CDS 25.0%
! ATTATCTAATCTTTGCATGT+GGG - chr2_2:54458613-54458632 Msa0258230:CDS 25.0%
! TCAACATTTGAAAGAGAAAA+CGG + chr2_2:54458928-54458947 None:intergenic 25.0%
!! ATAGTTTGAAACTGAGTAAA+AGG - chr2_2:54459967-54459986 Msa0258230:CDS 25.0%
!!! TCTGTTTTTTTATAAGCAGA+AGG + chr2_2:54460082-54460101 None:intergenic 25.0%
! AATTTGTTTAATAGGCTTGC+CGG - chr2_2:54454789-54454808 Msa0258230:three_prime_UTR 30.0%
!! CATTTGGTAATGATTTGTAC+GGG - chr2_2:54454987-54455006 Msa0258230:three_prime_UTR 30.0%
TTTGAACTTACACAAGTAAG+TGG + chr2_2:54455036-54455055 None:intergenic 30.0%
CTAAGGGAAGAAAATATAAC+TGG + chr2_2:54455138-54455157 None:intergenic 30.0%
ATGCAGCTACATTGAAATAA+TGG + chr2_2:54455209-54455228 None:intergenic 30.0%
!! TAACCATAAAGGTGTTAACT+TGG - chr2_2:54455492-54455511 Msa0258230:CDS 30.0%
!! AACCATAAAGGTGTTAACTT+GGG - chr2_2:54455493-54455512 Msa0258230:CDS 30.0%
! ACCAGTGATTTTGTGTATAT+GGG - chr2_2:54455592-54455611 Msa0258230:CDS 30.0%
AATGTATGACTGAGGTTTAT+AGG + chr2_2:54455623-54455642 None:intergenic 30.0%
! ATGCTTTTGCTAACAAGTTA+GGG + chr2_2:54455765-54455784 None:intergenic 30.0%
! AATGCTTTTGCTAACAAGTT+AGG + chr2_2:54455766-54455785 None:intergenic 30.0%
AAACAGAGGATTTACAAGAA+AGG + chr2_2:54455870-54455889 None:intergenic 30.0%
TATTTGGAGGAAAGTTTACA+TGG - chr2_2:54456021-54456040 Msa0258230:CDS 30.0%
AGTTTACATGGTTTAGTAGA+TGG - chr2_2:54456033-54456052 Msa0258230:CDS 30.0%
GTTTACATGGTTTAGTAGAT+GGG - chr2_2:54456034-54456053 Msa0258230:CDS 30.0%
GTGAAAACTATAGAAAGCTA+TGG - chr2_2:54456067-54456086 Msa0258230:CDS 30.0%
! AAATTTCCATTTTCAGCTTG+AGG - chr2_2:54456231-54456250 Msa0258230:intron 30.0%
!!! ATTCGCACAATTGTTTTTTC+TGG - chr2_2:54456259-54456278 Msa0258230:intron 30.0%
AACAAATGGTCAGAAAACTT+TGG - chr2_2:54456418-54456437 Msa0258230:CDS 30.0%
CTCTCTGCAATAAATAGTAA+GGG + chr2_2:54456690-54456709 None:intergenic 30.0%
TCTCTCTGCAATAAATAGTA+AGG + chr2_2:54456691-54456710 None:intergenic 30.0%
ATGTGAAGTGAGATAGTTAT+TGG - chr2_2:54456716-54456735 Msa0258230:CDS 30.0%
GAATAATTTGAAAGGAACAG+AGG - chr2_2:54456819-54456838 Msa0258230:intron 30.0%
GAATAATTTAAAAGGAACGG+AGG - chr2_2:54456848-54456867 Msa0258230:intron 30.0%
ATGCTTGGTTGATCAAATAT+CGG - chr2_2:54456885-54456904 Msa0258230:intron 30.0%
! AAAAACCATTGATTGTTGTC+TGG - chr2_2:54456966-54456985 Msa0258230:intron 30.0%
! AAAACCATTGATTGTTGTCT+GGG - chr2_2:54456967-54456986 Msa0258230:intron 30.0%
TGCATTTCTACTCATTTCAA+CGG + chr2_2:54457083-54457102 None:intergenic 30.0%
TAAGATGTACTGCAGTATAT+TGG - chr2_2:54457139-54457158 Msa0258230:intron 30.0%
TTGATATGATTATTTGCACC+AGG - chr2_2:54457188-54457207 Msa0258230:intron 30.0%
! ATCTGGATTTTTACATCAGA+TGG - chr2_2:54457217-54457236 Msa0258230:intron 30.0%
AAAACGCATTCCTTTATATC+TGG - chr2_2:54457458-54457477 Msa0258230:CDS 30.0%
! TAGTTTTTCACACGATTCTA+TGG - chr2_2:54457684-54457703 Msa0258230:intron 30.0%
GTGTTAAAAGAAAAGAAGGA+AGG + chr2_2:54457714-54457733 None:intergenic 30.0%
! CTTTCCCTTATTTGAATTAC+AGG - chr2_2:54457765-54457784 Msa0258230:intron 30.0%
CACTCCTGTAATTCAAATAA+GGG + chr2_2:54457772-54457791 None:intergenic 30.0%
!! TGCTTTTATTCTAGGAAGAA+CGG + chr2_2:54457920-54457939 None:intergenic 30.0%
!! CGTTCATTTGCTTTTATTCT+AGG + chr2_2:54457928-54457947 None:intergenic 30.0%
!! CAGTGCTGGTTATTTATTTA+TGG + chr2_2:54457952-54457971 None:intergenic 30.0%
AATATAAAAAGACACAGTGC+TGG + chr2_2:54457966-54457985 None:intergenic 30.0%
!! ATTTGATTTTGTTCGTGTCT+TGG - chr2_2:54457986-54458005 Msa0258230:intron 30.0%
ATGATAACATTGTTTGCATG+TGG + chr2_2:54458153-54458172 None:intergenic 30.0%
!! AAAATACAGGCATTGATTTC+AGG - chr2_2:54458417-54458436 Msa0258230:CDS 30.0%
!! CTAAAGAAAGTACTTCTGAA+GGG - chr2_2:54458440-54458459 Msa0258230:CDS 30.0%
! GATCAGATCTATATGGATTA+TGG + chr2_2:54458508-54458527 None:intergenic 30.0%
! TCCAAAATATTTTCTGTGCT+CGG - chr2_2:54458679-54458698 Msa0258230:intron 30.0%
TTGAAAGAGAAAACGGAAAA+GGG + chr2_2:54458921-54458940 None:intergenic 30.0%
TTTGAAAGAGAAAACGGAAA+AGG + chr2_2:54458922-54458941 None:intergenic 30.0%
AGACCAACAATTTCATCAAA+TGG - chr2_2:54459588-54459607 Msa0258230:CDS 30.0%
! TTGCCATTTGATGAAATTGT+TGG + chr2_2:54459594-54459613 None:intergenic 30.0%
!! TATAGAATGCATTTTGGGAA+AGG + chr2_2:54459849-54459868 None:intergenic 30.0%
ATTATGATTCTCAGTCATTC+TGG - chr2_2:54459932-54459951 Msa0258230:CDS 30.0%
GTATGAAAAAAAGAACACGA+GGG + chr2_2:54460058-54460077 None:intergenic 30.0%
TCGGATAAATGTGCTTTACT+TGG - chr2_2:54455092-54455111 Msa0258230:three_prime_UTR 35.0%
AAGCGCAGATTTAAGTCTAA+GGG + chr2_2:54455154-54455173 None:intergenic 35.0%
AAAGCGCAGATTTAAGTCTA+AGG + chr2_2:54455155-54455174 None:intergenic 35.0%
!!! AGCTGCATTTACTGATTTTG+AGG - chr2_2:54455221-54455240 Msa0258230:CDS 35.0%
ATTTAGCCTGCAATCGTAAA+TGG + chr2_2:54455260-54455279 None:intergenic 35.0%
ATGCAAATACTGGAGTACAA+AGG + chr2_2:54455373-54455392 None:intergenic 35.0%
TTTGTACTCCAGTATTTGCA+TGG - chr2_2:54455372-54455391 Msa0258230:CDS 35.0%
TAACATTGCCATGCAAATAC+TGG + chr2_2:54455383-54455402 None:intergenic 35.0%
!! ACCATAAAGGTGTTAACTTG+GGG - chr2_2:54455494-54455513 Msa0258230:CDS 35.0%
! CACCAGTGATTTTGTGTATA+TGG - chr2_2:54455591-54455610 Msa0258230:CDS 35.0%
ACCCATATACACAAAATCAC+TGG + chr2_2:54455596-54455615 None:intergenic 35.0%
! AGAATCCTCTGAAGAAAGAA+TGG + chr2_2:54455695-54455714 None:intergenic 35.0%
! CAAATTCTGACAAGAAGCAT+GGG - chr2_2:54455815-54455834 Msa0258230:CDS 35.0%
! AAATTCTGACAAGAAGCATG+GGG - chr2_2:54455816-54455835 Msa0258230:CDS 35.0%
AAAGCTATGGCGTAAACAAA+TGG - chr2_2:54456080-54456099 Msa0258230:CDS 35.0%
TATGGCGTAAACAAATGGAA+AGG - chr2_2:54456085-54456104 Msa0258230:CDS 35.0%
ATGGCGTAAACAAATGGAAA+GGG - chr2_2:54456086-54456105 Msa0258230:CDS 35.0%
!!! AATTGTTTTTTCTGGCGACT+GGG - chr2_2:54456267-54456286 Msa0258230:intron 35.0%
!! AGCTCTCTGAAATACAGATT+TGG + chr2_2:54456464-54456483 None:intergenic 35.0%
! GCTTTTCTGACCATGAATTT+TGG + chr2_2:54456493-54456512 None:intergenic 35.0%
GACGCTTAAAAATGAATGGA+GGG + chr2_2:54456585-54456604 None:intergenic 35.0%
TGACGCTTAAAAATGAATGG+AGG + chr2_2:54456586-54456605 None:intergenic 35.0%
GTCAATTTAAAAAGGAACGG+AGG - chr2_2:54456761-54456780 Msa0258230:CDS 35.0%
! AGGTGGTATGAGGAAAATTT+TGG - chr2_2:54456994-54457013 Msa0258230:intron 35.0%
! GGTGGTATGAGGAAAATTTT+GGG - chr2_2:54456995-54457014 Msa0258230:intron 35.0%
!! GGCTTCTTTTAGGAATTTCA+GGG + chr2_2:54457039-54457058 None:intergenic 35.0%
AAAAATCCAGATATCGAACC+TGG + chr2_2:54457209-54457228 None:intergenic 35.0%
!! TCAGATGGATTGATCTGATT+CGG - chr2_2:54457232-54457251 Msa0258230:CDS 35.0%
ACTTGAATATCGCATCTCAA+TGG - chr2_2:54457529-54457548 Msa0258230:CDS 35.0%
! GTAAGCAGTGTGTTTCTTTT+AGG - chr2_2:54457643-54457662 Msa0258230:CDS 35.0%
TTTAGGTAATTACCCTGACT+TGG - chr2_2:54457660-54457679 Msa0258230:CDS 35.0%
GTGAAAAACTAACCAAGTCA+GGG + chr2_2:54457675-54457694 None:intergenic 35.0%
TGTGAAAAACTAACCAAGTC+AGG + chr2_2:54457676-54457695 None:intergenic 35.0%
GGGAAAGAAAAAAAAAACGG+AGG + chr2_2:54457752-54457771 None:intergenic 35.0%
GCACTCCTGTAATTCAAATA+AGG + chr2_2:54457773-54457792 None:intergenic 35.0%
! AACATCTGTATTGGTAGAGA+AGG + chr2_2:54458120-54458139 None:intergenic 35.0%
CAAGAACTCAACATCTGTAT+TGG + chr2_2:54458129-54458148 None:intergenic 35.0%
! CTCTTTTTGTGTAGGTAATC+TGG + chr2_2:54458177-54458196 None:intergenic 35.0%
! TTAACGGTCTCTTTTTGTGT+AGG + chr2_2:54458185-54458204 None:intergenic 35.0%
!! ACTGTTTGGAGGTTTGTTAA+CGG + chr2_2:54458201-54458220 None:intergenic 35.0%
!! AAAAGTAAGGTACTGTTTGG+AGG + chr2_2:54458212-54458231 None:intergenic 35.0%
!! AGAGCTCCCTTTTAAAAGTA+AGG + chr2_2:54458225-54458244 None:intergenic 35.0%
! GAGCTCTTTGACAATTTTGA+AGG - chr2_2:54458238-54458257 Msa0258230:intron 35.0%
!!! GAAGCAACTTTTTTCATGTC+GGG + chr2_2:54458323-54458342 None:intergenic 35.0%
!!! GGAAGCAACTTTTTTCATGT+CGG + chr2_2:54458324-54458343 None:intergenic 35.0%
!! TTTTGTTTCAAGAGGGGAAT+GGG + chr2_2:54458345-54458364 None:intergenic 35.0%
!! TTTTTGTTTCAAGAGGGGAA+TGG + chr2_2:54458346-54458365 None:intergenic 35.0%
!!! ACTGCTTTTTGTTTCAAGAG+GGG + chr2_2:54458351-54458370 None:intergenic 35.0%
!!! CACTGCTTTTTGTTTCAAGA+GGG + chr2_2:54458352-54458371 None:intergenic 35.0%
! AATCCTCTTGGGGTATTATA+TGG - chr2_2:54458378-54458397 Msa0258230:CDS 35.0%
TTTCCATATAATACCCCAAG+AGG + chr2_2:54458384-54458403 None:intergenic 35.0%
!! GCTAAAGAAAGTACTTCTGA+AGG - chr2_2:54458439-54458458 Msa0258230:CDS 35.0%
AATTTCAACACGGGATGAAA+TGG - chr2_2:54459293-54459312 Msa0258230:CDS 35.0%
ATTTCAACACGGGATGAAAT+GGG - chr2_2:54459294-54459313 Msa0258230:CDS 35.0%
AAAGGTGATAAAAACTCTGC+GGG + chr2_2:54459327-54459346 None:intergenic 35.0%
GAAAGGTGATAAAAACTCTG+CGG + chr2_2:54459328-54459347 None:intergenic 35.0%
GTAACTAATTCTTGCACACT+AGG - chr2_2:54459522-54459541 Msa0258230:CDS 35.0%
! TTGATGAAATTGTTGGTCTC+TGG + chr2_2:54459587-54459606 None:intergenic 35.0%
ATGGCAATGTTCATAAGTGT+CGG - chr2_2:54459607-54459626 Msa0258230:intron 35.0%
ACAAATCTGACAAGAGAGAT+CGG + chr2_2:54459658-54459677 None:intergenic 35.0%
CTAGATGATGATTCAATCCA+GGG + chr2_2:54459708-54459727 None:intergenic 35.0%
ATTGAATCATCATCTAGGCT+TGG - chr2_2:54459711-54459730 Msa0258230:intron 35.0%
CGTATGAAAAAAAGAACACG+AGG + chr2_2:54460059-54460078 None:intergenic 35.0%
CGAACTAGATCATTCTAGTC+CGG + chr2_2:54454811-54454830 None:intergenic 40.0%
CCAAAAACAATCATCGTGAC+CGG + chr2_2:54454838-54454857 None:intergenic 40.0%
!! CGGTCACGATGATTGTTTTT+GGG - chr2_2:54454836-54454855 Msa0258230:three_prime_UTR 40.0%
CACGTGGAACATCTCTTAAA+GGG - chr2_2:54454957-54454976 Msa0258230:three_prime_UTR 40.0%
ACGTGGAACATCTCTTAAAG+GGG - chr2_2:54454958-54454977 Msa0258230:three_prime_UTR 40.0%
CTTAAAGGGGCTGAAACATT+TGG - chr2_2:54454971-54454990 Msa0258230:three_prime_UTR 40.0%
! GTAATGCCATTTACGATTGC+AGG - chr2_2:54455251-54455270 Msa0258230:CDS 40.0%
GCATGGCAATGTTACAATAC+TGG - chr2_2:54455389-54455408 Msa0258230:CDS 40.0%
CATCTATCTTTGCACTCTCT+GGG + chr2_2:54455468-54455487 None:intergenic 40.0%
TCATCTATCTTTGCACTCTC+TGG + chr2_2:54455469-54455488 None:intergenic 40.0%
TCCCCAAGTTAACACCTTTA+TGG + chr2_2:54455498-54455517 None:intergenic 40.0%
AGTCTGCCTTTGCAAACTAA+CGG - chr2_2:54455532-54455551 Msa0258230:CDS 40.0%
TTTGGCCATTCTTTCTTCAG+AGG - chr2_2:54455687-54455706 Msa0258230:CDS 40.0%
! TAACAGCTTCACGCTTCTTT+TGG - chr2_2:54455791-54455810 Msa0258230:CDS 40.0%
CCATGCTTCTTGTCAGAATT+TGG + chr2_2:54455817-54455836 None:intergenic 40.0%
CCAAATTCTGACAAGAAGCA+TGG - chr2_2:54455814-54455833 Msa0258230:CDS 40.0%
TCCTCTGTTTCAAGCAAGAA+AGG - chr2_2:54455880-54455899 Msa0258230:CDS 40.0%
CCTCTGTTTCAAGCAAGAAA+GGG - chr2_2:54455881-54455900 Msa0258230:CDS 40.0%
!!! AAGACCGGAAAGTATTTTGG+CGG + chr2_2:54455947-54455966 None:intergenic 40.0%
!!! AGCAAGACCGGAAAGTATTT+TGG + chr2_2:54455950-54455969 None:intergenic 40.0%
TGTTCTCCTCAAGCTGAAAA+TGG + chr2_2:54456240-54456259 None:intergenic 40.0%
!!! CAATTGTTTTTTCTGGCGAC+TGG - chr2_2:54456266-54456285 Msa0258230:intron 40.0%
CAAGAGTAGATGTATCACTG+TGG + chr2_2:54456333-54456352 None:intergenic 40.0%
CACAGTGATACATCTACTCT+TGG - chr2_2:54456331-54456350 Msa0258230:intron 40.0%
ATCTACTCTTGGAACAACAC+AGG - chr2_2:54456342-54456361 Msa0258230:CDS 40.0%
AATGGTCAGAAAACTTTGGC+TGG - chr2_2:54456422-54456441 Msa0258230:CDS 40.0%
AGCTGCATTGCCAAAATTCA+TGG - chr2_2:54456480-54456499 Msa0258230:CDS 40.0%
TTAGGAATTTCAGGGACATC+AGG + chr2_2:54457031-54457050 None:intergenic 40.0%
!! CGGCTTCTTTTAGGAATTTC+AGG + chr2_2:54457040-54457059 None:intergenic 40.0%
TATAACCTCCAGGATGGAAA+AGG - chr2_2:54457261-54457280 Msa0258230:CDS 40.0%
! TATCTTGACCTTTTCCATCC+TGG + chr2_2:54457272-54457291 None:intergenic 40.0%
!!! CTTTTGGCTCTCAAAAGCTA+TGG + chr2_2:54457364-54457383 None:intergenic 40.0%
!! GAAATAGAAGAAGTGCCAGA+AGG - chr2_2:54457414-54457433 Msa0258230:CDS 40.0%
AACCAAAACTTCTCTCCTTC+TGG + chr2_2:54457432-54457451 None:intergenic 40.0%
!!! ACGGAGGTTTTAGAGTGAAT+AGG + chr2_2:54457736-54457755 None:intergenic 40.0%
CTCAAGTGCAGTGTATGTAA+AGG - chr2_2:54457794-54457813 Msa0258230:CDS 40.0%
AGATAGAAGGATGATGCATG+AGG + chr2_2:54457822-54457841 None:intergenic 40.0%
TTTGTCAGGTAATTGTCACG+AGG - chr2_2:54458076-54458095 Msa0258230:intron 40.0%
TTGTCAGGTAATTGTCACGA+GGG - chr2_2:54458077-54458096 Msa0258230:intron 40.0%
TCAAATACCGAGATCTACCA+GGG - chr2_2:54458283-54458302 Msa0258230:intron 40.0%
!!! CCACTGCTTTTTGTTTCAAG+AGG + chr2_2:54458353-54458372 None:intergenic 40.0%
CCTCTTGAAACAAAAAGCAG+TGG - chr2_2:54458350-54458369 Msa0258230:intron 40.0%
CAGTGGCAAAAAATCCTCTT+GGG - chr2_2:54458367-54458386 Msa0258230:CDS 40.0%
AGTGGCAAAAAATCCTCTTG+GGG - chr2_2:54458368-54458387 Msa0258230:CDS 40.0%
TGACAAACAGGTTCCAATTG+AGG + chr2_2:54458479-54458498 None:intergenic 40.0%
TTATGGCACAAGTGACAAAC+AGG + chr2_2:54458491-54458510 None:intergenic 40.0%
! GCCGAGCACAGAAAATATTT+TGG + chr2_2:54458683-54458702 None:intergenic 40.0%
AAATCAGAGTAAGGACACAC+GGG + chr2_2:54458739-54458758 None:intergenic 40.0%
CAAATCAGAGTAAGGACACA+CGG + chr2_2:54458740-54458759 None:intergenic 40.0%
!! AGGTTCTAGTTCTGAAACAC+TGG - chr2_2:54458825-54458844 Msa0258230:CDS 40.0%
TCTGCATCTAACTCTAACTG+GGG + chr2_2:54458964-54458983 None:intergenic 40.0%
CTCTGCATCTAACTCTAACT+GGG + chr2_2:54458965-54458984 None:intergenic 40.0%
TCTCTGCATCTAACTCTAAC+TGG + chr2_2:54458966-54458985 None:intergenic 40.0%
GCTTCGAAGAAAAACCATTC+TGG - chr2_2:54459000-54459019 Msa0258230:CDS 40.0%
! AACCATTCTGGAGAAGATTC+TGG - chr2_2:54459012-54459031 Msa0258230:CDS 40.0%
AACCAGAATCTTCTCCAGAA+TGG + chr2_2:54459017-54459036 None:intergenic 40.0%
TACTCTTATCTTTCCTGCTG+AGG - chr2_2:54459074-54459093 Msa0258230:CDS 40.0%
ATCAGTTCAGCATCTGAAAG+AGG + chr2_2:54459135-54459154 None:intergenic 40.0%
TTCAGAAAATACCAACGACG+AGG - chr2_2:54459211-54459230 Msa0258230:CDS 40.0%
!! ACGAGGCATTTTAAACCTGA+GGG - chr2_2:54459228-54459247 Msa0258230:CDS 40.0%
GGGACAATAATAGCTCTTCT+GGG - chr2_2:54459250-54459269 Msa0258230:CDS 40.0%
GGACAATAATAGCTCTTCTG+GGG - chr2_2:54459251-54459270 Msa0258230:CDS 40.0%
GACAATAATAGCTCTTCTGG+GGG - chr2_2:54459252-54459271 Msa0258230:CDS 40.0%
GGCATGCTGAAATTTCAACA+CGG - chr2_2:54459283-54459302 Msa0258230:CDS 40.0%
GCATGCTGAAATTTCAACAC+GGG - chr2_2:54459284-54459303 Msa0258230:CDS 40.0%
CCAAAGTCATGTTCTACGAA+AGG + chr2_2:54459345-54459364 None:intergenic 40.0%
CCTTTCGTAGAACATGACTT+TGG - chr2_2:54459342-54459361 Msa0258230:CDS 40.0%
CTGAACTTCTGCATCTAGAT+AGG - chr2_2:54459451-54459470 Msa0258230:CDS 40.0%
! AGATAGGAGTAGTCACTTTG+AGG - chr2_2:54459467-54459486 Msa0258230:CDS 40.0%
CTAGTAGTTGCACATTCTTC+AGG + chr2_2:54459552-54459571 None:intergenic 40.0%
AAATCTGACAAGAGAGATCG+GGG + chr2_2:54459656-54459675 None:intergenic 40.0%
CAAATCTGACAAGAGAGATC+GGG + chr2_2:54459657-54459676 None:intergenic 40.0%
CTTGTCAGATTTGTCGCATT+TGG - chr2_2:54459664-54459683 Msa0258230:intron 40.0%
CCTAGATGATGATTCAATCC+AGG + chr2_2:54459709-54459728 None:intergenic 40.0%
CCTGGATTGAATCATCATCT+AGG - chr2_2:54459706-54459725 Msa0258230:intron 40.0%
! CCGGTCACGATGATTGTTTT+TGG - chr2_2:54454835-54454854 Msa0258230:three_prime_UTR 45.0%
!!! TGTTTTTGGGTCGTGACACA+AGG - chr2_2:54454849-54454868 Msa0258230:three_prime_UTR 45.0%
TGTATATACCAGAAGGGCCA+TGG - chr2_2:54454891-54454910 Msa0258230:three_prime_UTR 45.0%
GATGTTCCACGTGCAATTGT+TGG + chr2_2:54454950-54454969 None:intergenic 45.0%
GCACGTGGAACATCTCTTAA+AGG - chr2_2:54454956-54454975 Msa0258230:three_prime_UTR 45.0%
! TTTGTACGGGCAGCTTTTCA+TGG - chr2_2:54455000-54455019 Msa0258230:three_prime_UTR 45.0%
! TTGTACGGGCAGCTTTTCAT+GGG - chr2_2:54455001-54455020 Msa0258230:three_prime_UTR 45.0%
! TGTGTTCCGTTTGGAACACA+GGG + chr2_2:54455439-54455458 None:intergenic 45.0%
! ATGTGTTCCGTTTGGAACAC+AGG + chr2_2:54455440-54455459 None:intergenic 45.0%
GGGTTTAGATGTGTTCCGTT+TGG + chr2_2:54455448-54455467 None:intergenic 45.0%
!! TGGTCACCGTTAGTTTGCAA+AGG + chr2_2:54455541-54455560 None:intergenic 45.0%
!! ACTGGCTTTGGAAAGTGCAA+AGG - chr2_2:54455562-54455581 Msa0258230:CDS 45.0%
TTCAGAGGATTCTAGATCCG+AGG - chr2_2:54455702-54455721 Msa0258230:CDS 45.0%
TCAGAGGATTCTAGATCCGA+GGG - chr2_2:54455703-54455722 Msa0258230:CDS 45.0%
CTTTCTTCGAGTCAGACACA+TGG + chr2_2:54455729-54455748 None:intergenic 45.0%
GCTAACAAGTTAGGGTTGTC+AGG + chr2_2:54455757-54455776 None:intergenic 45.0%
ATGGGGAGGTTATAAGAGAG+AGG - chr2_2:54455833-54455852 Msa0258230:CDS 45.0%
! TTATAAGAGAGAGGTGTGCC+TGG - chr2_2:54455842-54455861 Msa0258230:CDS 45.0%
!! GGATTTACAAGAAAGGCACC+AGG + chr2_2:54455863-54455882 None:intergenic 45.0%
CCCTTTCTTGCTTGAAACAG+AGG + chr2_2:54455884-54455903 None:intergenic 45.0%
!!! AAGTATTTTGGCGGCGCTTT+TGG + chr2_2:54455938-54455957 None:intergenic 45.0%
ATTCCTTCTCCACTCCTTAC+AGG + chr2_2:54455973-54455992 None:intergenic 45.0%
TCATGGTCAGAAAAGCAGCT+CGG - chr2_2:54456497-54456516 Msa0258230:CDS 45.0%
GTTGCCCAGACAACAATCAA+TGG + chr2_2:54456974-54456993 None:intergenic 45.0%
TTGATTGTTGTCTGGGCAAC+AGG - chr2_2:54456974-54456993 Msa0258230:intron 45.0%
TTTGCACCAGGTTCGATATC+TGG - chr2_2:54457200-54457219 Msa0258230:intron 45.0%
!! ATGGATTGATCTGATTCGGC+CGG - chr2_2:54457236-54457255 Msa0258230:CDS 45.0%
GCTCTCAAAAGCTATGGCAT+AGG + chr2_2:54457358-54457377 None:intergenic 45.0%
! GCCAAAAGCACATTCCTTCA+CGG - chr2_2:54457376-54457395 Msa0258230:CDS 45.0%
! CCAAAAGCACATTCCTTCAC+GGG - chr2_2:54457377-54457396 Msa0258230:CDS 45.0%
! TGCCAGAAGGAGAGAAGTTT+TGG - chr2_2:54457427-54457446 Msa0258230:CDS 45.0%
TCGCATCTCAATGGCACAAA+AGG - chr2_2:54457538-54457557 Msa0258230:CDS 45.0%
CATCTCAATGGCACAAAAGG+CGG - chr2_2:54457541-54457560 Msa0258230:CDS 45.0%
AAAGGCGGTTGAATGCTATC+TGG - chr2_2:54457556-54457575 Msa0258230:CDS 45.0%
AATTGTCTCTCTTGCACGTG+AGG + chr2_2:54457599-54457618 None:intergenic 45.0%
CACGTGCAAGAGAGACAATT+TGG - chr2_2:54457599-54457618 Msa0258230:CDS 45.0%
! ATATGGGTGCTGCATTTGTC+AGG - chr2_2:54458062-54458081 Msa0258230:intron 45.0%
! CCATTTTCCCTGGTAGATCT+CGG + chr2_2:54458293-54458312 None:intergenic 45.0%
GCAGTGGCAAAAAATCCTCT+TGG - chr2_2:54458366-54458385 Msa0258230:intron 45.0%
ACGTTCAAGCTTGCCTCAAT+TGG - chr2_2:54458463-54458482 Msa0258230:CDS 45.0%
TCTTTGCATGTGGGCTTTAC+AGG - chr2_2:54458622-54458641 Msa0258230:CDS 45.0%
CTTTGCATGTGGGCTTTACA+GGG - chr2_2:54458623-54458642 Msa0258230:CDS 45.0%
GCTTCAAATGTTGCAGGTGT+CGG - chr2_2:54458701-54458720 Msa0258230:intron 45.0%
CGTGTGTCCTTACTCTGATT+TGG - chr2_2:54458738-54458757 Msa0258230:intron 45.0%
TTGCGCACCAAATCAGAGTA+AGG + chr2_2:54458748-54458767 None:intergenic 45.0%
!! TTACTCTGATTTGGTGCGCA+AGG - chr2_2:54458747-54458766 Msa0258230:CDS 45.0%
!! GAGGGAAAAAACGGACTAAC+AGG + chr2_2:54458871-54458890 None:intergenic 45.0%
!!! TAGTCCGTTTTTTCCCTCAG+AGG - chr2_2:54458873-54458892 Msa0258230:CDS 45.0%
! ACAGCCTCTGAGGGAAAAAA+CGG + chr2_2:54458880-54458899 None:intergenic 45.0%
TGTTCAGAAACAGCCTCTGA+GGG + chr2_2:54458889-54458908 None:intergenic 45.0%
TTGTTCAGAAACAGCCTCTG+AGG + chr2_2:54458890-54458909 None:intergenic 45.0%
!! TCTGGAGAAGATTCTGGTTC+TGG - chr2_2:54459018-54459037 Msa0258230:CDS 45.0%
!! AGATTCTGGTTCTGGAACAC+TGG - chr2_2:54459026-54459045 Msa0258230:CDS 45.0%
AACAGTGGAGGATTGTTCTC+TGG + chr2_2:54459111-54459130 None:intergenic 45.0%
TCTGAAAGAGGAAACAGTGG+AGG + chr2_2:54459123-54459142 None:intergenic 45.0%
GCATCTGAAAGAGGAAACAG+TGG + chr2_2:54459126-54459145 None:intergenic 45.0%
ATTGAGCGTAACACCATCTC+TGG - chr2_2:54459180-54459199 Msa0258230:CDS 45.0%
TTGAGCGTAACACCATCTCT+GGG - chr2_2:54459181-54459200 Msa0258230:CDS 45.0%
! GGTTTAAAATGCCTCGTCGT+TGG + chr2_2:54459225-54459244 None:intergenic 45.0%
!! GACGAGGCATTTTAAACCTG+AGG - chr2_2:54459227-54459246 Msa0258230:CDS 45.0%
!! CGAGGCATTTTAAACCTGAG+GGG - chr2_2:54459229-54459248 Msa0258230:CDS 45.0%
!! GAGGCATTTTAAACCTGAGG+GGG - chr2_2:54459230-54459249 Msa0258230:CDS 45.0%
GGGGACAATAATAGCTCTTC+TGG - chr2_2:54459249-54459268 Msa0258230:CDS 45.0%
GCAGAAGTTCAGAAGAAGAG+AGG + chr2_2:54459443-54459462 None:intergenic 45.0%
TTTGAGGAAGCTGACGTGTT+TGG - chr2_2:54459483-54459502 Msa0258230:CDS 45.0%
TTGAGGAAGCTGACGTGTTT+GGG - chr2_2:54459484-54459503 Msa0258230:CDS 45.0%
AATCTGACAAGAGAGATCGG+GGG + chr2_2:54459655-54459674 None:intergenic 45.0%
CATCATCTAGGCTTGGAGAT+TGG - chr2_2:54459718-54459737 Msa0258230:intron 45.0%
!!! TTATTTTATTTTTTAAAGTT+CGG - chr2_2:54456159-54456178 Msa0258230:CDS 5.0%
! GAATGATCTAGTTCGTGCGC+CGG - chr2_2:54454816-54454835 Msa0258230:three_prime_UTR 50.0%
GGTCGTGACACAAGGTGTAT+TGG - chr2_2:54454857-54454876 Msa0258230:three_prime_UTR 50.0%
TTGCATTCTGGGCAATGCCA+TGG + chr2_2:54454911-54454930 None:intergenic 50.0%
ATTGGGCCAACAATTGCACG+TGG - chr2_2:54454941-54454960 Msa0258230:three_prime_UTR 50.0%
! GTGTTCCGTTTGGAACACAG+GGG + chr2_2:54455438-54455457 None:intergenic 50.0%
CAAACTAACGGTGACCAGAC+TGG - chr2_2:54455544-54455563 Msa0258230:CDS 50.0%
TGCACTTTCCAAAGCCAGTC+TGG + chr2_2:54455561-54455580 None:intergenic 50.0%
TGCATCTGCTGCTGCTAGTT+TGG - chr2_2:54455669-54455688 Msa0258230:CDS 50.0%
! TTCTGACAAGAAGCATGGGG+AGG - chr2_2:54455819-54455838 Msa0258230:CDS 50.0%
AGCGCCGCCAAAATACTTTC+CGG - chr2_2:54455940-54455959 Msa0258230:CDS 50.0%
TTTCCGGTCTTGCTCCTGTA+AGG - chr2_2:54455956-54455975 Msa0258230:CDS 50.0%
ACTCCTTACAGGAGCAAGAC+CGG + chr2_2:54455962-54455981 None:intergenic 50.0%
GGTCAGAAAACTTTGGCTGG+TGG - chr2_2:54456425-54456444 Msa0258230:CDS 50.0%
ATTGTTGTCTGGGCAACAGG+TGG - chr2_2:54456977-54456996 Msa0258230:intron 50.0%
TCCTAAAAGAAGCCGACAGC+TGG - chr2_2:54457045-54457064 Msa0258230:intron 50.0%
!!! ACCAGCTGTCGGCTTCTTTT+AGG + chr2_2:54457049-54457068 None:intergenic 50.0%
AAAGAAGCCGACAGCTGGTT+TGG - chr2_2:54457050-54457069 Msa0258230:intron 50.0%
TGCATCACAGCTTGCACTTC+AGG - chr2_2:54457099-54457118 Msa0258230:intron 50.0%
CCATCCTGGAGGTTATACTC+CGG + chr2_2:54457258-54457277 None:intergenic 50.0%
! CTTGACCTTTTCCATCCTGG+AGG + chr2_2:54457269-54457288 None:intergenic 50.0%
! CCCGTGAAGGAATGTGCTTT+TGG + chr2_2:54457380-54457399 None:intergenic 50.0%
AGCACATTCCTTCACGGGTA+AGG - chr2_2:54457382-54457401 Msa0258230:CDS 50.0%
GCAATCTTCCTTACCCGTGA+AGG + chr2_2:54457393-54457412 None:intergenic 50.0%
GCGGTTGAATGCTATCTGGA+AGG - chr2_2:54457560-54457579 Msa0258230:CDS 50.0%
CCGAGATCTACCAGGGAAAA+TGG - chr2_2:54458290-54458309 Msa0258230:intron 50.0%
TGCTCGGCTTCAAATGTTGC+AGG - chr2_2:54458695-54458714 Msa0258230:intron 50.0%
GAGCAAGTTGTAGAGCAGTC+AGG - chr2_2:54458769-54458788 Msa0258230:CDS 50.0%
TTGTAGAGCAGTCAGGCTCA+CGG - chr2_2:54458776-54458795 Msa0258230:CDS 50.0%
!! GCTTCCAAGAGGAAGCATTC+TGG - chr2_2:54458799-54458818 Msa0258230:CDS 50.0%
TGCTCCAGAATGCTTCCTCT+TGG + chr2_2:54458806-54458825 None:intergenic 50.0%
!! AAGAGGAAGCATTCTGGAGC+AGG - chr2_2:54458805-54458824 Msa0258230:CDS 50.0%
TGCAGAGAAGTCACACTCAC+AGG - chr2_2:54458978-54458997 Msa0258230:CDS 50.0%
GGTTTAGCAACATCCTCAGC+AGG + chr2_2:54459090-54459109 None:intergenic 50.0%
TCAATGCCTGCATCTGACTC+GGG + chr2_2:54459165-54459184 None:intergenic 50.0%
CTCAATGCCTGCATCTGACT+CGG + chr2_2:54459166-54459185 None:intergenic 50.0%
GTAACACCATCTCTGGGTCA+GGG - chr2_2:54459187-54459206 Msa0258230:CDS 50.0%
GAGCTATTATTGTCCCCCTC+AGG + chr2_2:54459246-54459265 None:intergenic 50.0%
TGAGGAAGCTGACGTGTTTG+GGG - chr2_2:54459485-54459504 Msa0258230:CDS 50.0%
ACGTGTTTGGGGACTTGTCA+GGG - chr2_2:54459496-54459515 Msa0258230:CDS 50.0%
AGGCTTGGAGATTGGAAGTG+CGG - chr2_2:54459726-54459745 Msa0258230:intron 50.0%
! ATTGGAAGTGCGGGAATTGC+AGG - chr2_2:54459736-54459755 Msa0258230:intron 50.0%
! TTGGAAGTGCGGGAATTGCA+GGG - chr2_2:54459737-54459756 Msa0258230:intron 50.0%
! AGGGGCGTGAAGAGCTTTCT+GGG + chr2_2:54455420-54455439 None:intergenic 55.0%
TCACGCCCCTGTGTTCCAAA+CGG - chr2_2:54455430-54455449 Msa0258230:CDS 55.0%
!! AACGGTGACCAGACTGGCTT+TGG - chr2_2:54455550-54455569 Msa0258230:CDS 55.0%
GGTCTTGCTCCTGTAAGGAG+TGG - chr2_2:54455961-54455980 Msa0258230:CDS 55.0%
GCTCCTGTAAGGAGTGGAGA+AGG - chr2_2:54455967-54455986 Msa0258230:CDS 55.0%
! ACTGGGTGAAGCTGACGGAT+GGG - chr2_2:54456284-54456303 Msa0258230:intron 55.0%
GTCAGAAAAGCAGCTCGGCA+AGG - chr2_2:54456502-54456521 Msa0258230:CDS 55.0%
TCTGGGCAACAGGTGGTATG+AGG - chr2_2:54456984-54457003 Msa0258230:intron 55.0%
CAGCTCTCCAAACCAGCTGT+CGG + chr2_2:54457060-54457079 None:intergenic 55.0%
CCGGAGTATAACCTCCAGGA+TGG - chr2_2:54457255-54457274 Msa0258230:CDS 55.0%
! GGGACGACAACCATTTTCCC+TGG + chr2_2:54458303-54458322 None:intergenic 55.0%
TGCATGTGGGCTTTACAGGG+TGG - chr2_2:54458626-54458645 Msa0258230:intron 55.0%
TGTAGAGCAGTCAGGCTCAC+GGG - chr2_2:54458777-54458796 Msa0258230:CDS 55.0%
ACAGAACCCGAGTCAGATGC+AGG - chr2_2:54459156-54459175 Msa0258230:CDS 55.0%
CGTAACACCATCTCTGGGTC+AGG - chr2_2:54459186-54459205 Msa0258230:CDS 55.0%
! GCTCTTCTGGGGGTGAAGTT+CGG - chr2_2:54459262-54459281 Msa0258230:CDS 55.0%
GACGTGTTTGGGGACTTGTC+AGG - chr2_2:54459495-54459514 Msa0258230:CDS 55.0%
TTCACAGCAAGTGCTCACCC+TGG - chr2_2:54459688-54459707 Msa0258230:intron 55.0%
! GGCTTGGAGATTGGAAGTGC+GGG - chr2_2:54459727-54459746 Msa0258230:intron 55.0%
AGTGCGGGAATTGCAGGGAA+TGG - chr2_2:54459742-54459761 Msa0258230:intron 55.0%
! CAGGGGCGTGAAGAGCTTTC+TGG + chr2_2:54455421-54455440 None:intergenic 60.0%
CGAGTCAGACACATGGCCCT+CGG + chr2_2:54455722-54455741 None:intergenic 60.0%
TGGCGACTGGGTGAAGCTGA+CGG - chr2_2:54456279-54456298 Msa0258230:intron 60.0%
GACTGGGTGAAGCTGACGGA+TGG - chr2_2:54456283-54456302 Msa0258230:intron 60.0%
! GAAGCTGACGGATGGGTGGT+TGG - chr2_2:54456291-54456310 Msa0258230:intron 60.0%
TCGGCCGGAGTATAACCTCC+AGG - chr2_2:54457251-54457270 Msa0258230:CDS 60.0%
CTGAAGCCCTGACCCAGAGA+TGG + chr2_2:54459196-54459215 None:intergenic 60.0%
TGACAAGAGAGATCGGGGGC+TGG + chr2_2:54459651-54459670 None:intergenic 60.0%
GGGCAATGCCATGGCCCTTC+TGG + chr2_2:54454902-54454921 None:intergenic 65.0%
! GGGTGAAGCTGACGGATGGG+TGG - chr2_2:54456287-54456306 Msa0258230:intron 65.0%
CAGGCTCACGGGCTTCCAAG+AGG - chr2_2:54458788-54458807 Msa0258230:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 54454783 54460107 54454783 ID=Msa0258230;Name=Msa0258230
chr2_2 mRNA 54454783 54460107 54454783 ID=Msa0258230-mRNA-1;Parent=Msa0258230;Name=Msa0258230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=107|1|1|1|1|1|8|337|1171
chr2_2 exon 54454783 54456246 54454783 ID=Msa0258230-mRNA-1:exon:16373;Parent=Msa0258230-mRNA-1
chr2_2 exon 54456333 54456806 54456333 ID=Msa0258230-mRNA-1:exon:16372;Parent=Msa0258230-mRNA-1
chr2_2 exon 54457075 54457103 54457075 ID=Msa0258230-mRNA-1:exon:16371;Parent=Msa0258230-mRNA-1
chr2_2 exon 54457226 54457680 54457226 ID=Msa0258230-mRNA-1:exon:16370;Parent=Msa0258230-mRNA-1
chr2_2 exon 54457770 54457894 54457770 ID=Msa0258230-mRNA-1:exon:16369;Parent=Msa0258230-mRNA-1
chr2_2 exon 54458367 54458643 54458367 ID=Msa0258230-mRNA-1:exon:16368;Parent=Msa0258230-mRNA-1
chr2_2 exon 54458744 54459617 54458744 ID=Msa0258230-mRNA-1:exon:16367;Parent=Msa0258230-mRNA-1
chr2_2 exon 54459846 54460107 54459846 ID=Msa0258230-mRNA-1:exon:16366;Parent=Msa0258230-mRNA-1
chr2_2 five_prime_UTR 54460001 54460107 54460001 ID=Msa0258230-mRNA-1:five_prime_utr;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54459846 54460000 54459846 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54458744 54459617 54458744 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54458367 54458643 54458367 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54457770 54457894 54457770 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54457226 54457680 54457226 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54457075 54457103 54457075 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54456333 54456806 54456333 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 CDS 54455120 54456246 54455120 ID=Msa0258230-mRNA-1:cds;Parent=Msa0258230-mRNA-1
chr2_2 three_prime_UTR 54454783 54455119 54454783 ID=Msa0258230-mRNA-1:three_prime_utr;Parent=Msa0258230-mRNA-1
Gene Sequence

>Msa0258230

ATGTATATACCAGAAGGGCCATGGCATTGCCCAGAATGCAAAATAAATATGATTGGGCCAACAATTGCACGTGGAACATCTCTTAAAGGGGCTGAAACATTTGGTAATGATTTGTACGGGCAGCTTTTCATGGGTACTTGCGACCACTTACTTGTGCTAAATGTCAAAAGTGCCGAGTTTTGTCATAATTACTACAATCAGAATGACGTTCGTAAAGTTATTCAAGTGCTTTATGATTCTGTGCAACATAGACCTTTGTACTCCAGTATTTGCATGGCAATGTTACAATACTGGAATATCCCAGAAAGCTCTTCACGCCCCTGTGTTCCAAACGGAACACATCTAAACCCAGAGAGTGCAAAGATAGATGAAGATAACCATAAAGGTGTTAACTTGGGGAATGCAAATGACACTAGTCTGCCTTTGCAAACTAACGGTGACCAGACTGGCTTTGGAAAGTGCAAAGGAAATATCACCAGTGATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATAACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAGTTTGGCCATTCTTTCTTCAGAGGATTCTAGATCCGAGGGCCATGTGTCTGACTCGAAGAAAGCTACACCTGACAACCCTAACTTGTTAGCAAAAGCATTTTCACTAACAGCTTCACGCTTCTTTTGGCCAAATTCTGACAAGAAGCATGGGGAGGTTATAAGAGAGAGGTGTGCCTGGTGCCTTTCTTGTAAATCCTCTGTTTCAAGCAAGAAAGGGTGCATGTTAAATTATGCTGCTACATATGCTACCAAAAGCGCCGCCAAAATACTTTCCGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTAGCCCTACCATTTCAACATATATCATATATTTGGAGGAAAGTTTACATGGTTTAGTAGATGGGCCCTTTCTTAGTGAAAACTATAGAAAGCTATGGCGTAAACAAATGGAAAGGGCCACATCATTTAGTAACATAAAGCCACTTTTACTAAAACTTGAGGAGAACATTCGCACAATTGTTTTTTCTGGCGACTGGGTGAAGCTGACGGATGGGTGGTTGGTTGAATCTCTCACAATCCACAGTGATACATCTACTCTTGGAACAACACAGGAACGTGCATCATGTGACAGATGTAGAAAACAATTACCTATCAAATATACAGTCAACAAATGGTCAGAAAACTTTGGCTGGTGGAATGACAAATTTACCAAATCTGTATTTCAGAGAGCTGCATTGCCAAAATTCATGGTCAGAAAAGCAGCTCGGCAAGGTGGTATGAGGAAAATTTTGGGTATTGTCTATCCTGATGTCCCTGAAATTCCTAAAAGAAGCCGACAGCTGGTTTGGAGAGCTGCCGTTGAAATGAGTAGAAATGCATCACAGCTTGCACTTCAGGTTCGATATCTGGATTTTTACATCAGATGGATTGATCTGATTCGGCCGGAGTATAACCTCCAGGATGGAAAAGGTCAAGATACTGAAGTTTCTGCTTTTAGAAATGCAAATATTTATGACAAAAAGTTTGCAAAGGGAAAAACATCCTATGCCATAGCTTTTGAGAGCCAAAAGCACATTCCTTCACGGGTAAGGAAGATTGCTGAAATAGAAGAAGTGCCAGAAGGAGAGAAGTTTTGGTTTTCTGAAAAACGCATTCCTTTATATCTGGTAAAAGAGTATGAAGTACGAAACAAAAAAGAGTCATTTCATAAAGATAACTTGAATATCGCATCTCAATGGCACAAAAGGCGGTTGAATGCTATCTGGAAGGACATATTTTCTTACCTCACGTGCAAGAGAGACAATTTGGACTTGTTATCATGTTCTGTATGTAAGCAGTGTGTTTCTTTTAGGAGTGCTCTCAAGTGCAGTGTATGTAAAGGTAATTGTCACGAGGGCTGTTCAATAGATTCAACCTTCTCTACCAATACAGATGTTGAGTTCTTGACCACATGCAAACAATGTTATCATACCAGATTACCTACACAAAAAGAGACCGTTAACAAACCTCCAAACAGTACCTTACTTTTAAAAGGGAGCTCTTTGACAATTTTGAAGGAAACAGCGCCTAAATGTGATGATCAAATACCGAGATCTACCAGGGAAAATGGTTGTCGTCCCGACATGAAAAAAGTTGCTTCCCATTCCCCTCTTGAAACAAAAAGCAGTGGCAAAAAATCCTCTTGGGGTATTATATGGAAAAAGAATAACAATGAAAATACAGGCATTGATTTCAGGCTAAAGAAAGTACTTCTGAAGGGACGTTCAAGCTTGCCTCAATTGGAACCTGTTTGTCACTTGTGCCATAATCCATATAGATCTGATCTAATGTATATAGGCTGTGAAACATGTACCCGGTGGTATCATGCTGAAGCTCTTGAACTTGAAGAGTCCAAAATATTTTCTGTGCTCGGCTTCAAATGTTGCAGGTGTCGGAAGATAAAGTCACCCGTGTGTCCTTACTCTGATTTGGTGCGCAAGGAGCAAGTTGTAGAGCAGTCAGGCTCACGGGCTTCCAAGAGGAAGCATTCTGGAGCAGGTTCTAGTTCTGAAACACTGGCTGACATTAGAGCATGTGAGCCTGTTAGTCCGTTTTTTCCCTCAGAGGCTGTTTCTGAACAAGAGAACAACCCTTTTCCGTTTTCTCTTTCAAATGTTGAACTGATTACAGAACCCCAGTTAGAGTTAGATGCAGAGAAGTCACACTCACAGGCTTCGAAGAAAAACCATTCTGGAGAAGATTCTGGTTCTGGAACACTGGCTGACACAAGAGCTAGTGAGTCTACTACTCTTATCTTTCCTGCTGAGGATGTTGCTAAACCAGAGAACAATCCTCCACTGTTTCCTCTTTCAGATGCTGAACTGATTACAGAACCCGAGTCAGATGCAGGCATTGAGCGTAACACCATCTCTGGGTCAGGGCTTCAGAAAATACCAACGACGAGGCATTTTAAACCTGAGGGGGACAATAATAGCTCTTCTGGGGGTGAAGTTCGGCATGCTGAAATTTCAACACGGGATGAAATGGGTAATCTGCCCGCAGAGTTTTTATCACCTTTCGTAGAACATGACTTTGGCTTCGCTGACTTCAATCTTCTGAGTGACTTTGAAATTGTTGATAATGAATTCATGGACTTCGAATCAGAAACTCACCTCTCTTCTTCTGAACTTCTGCATCTAGATAGGAGTAGTCACTTTGAGGAAGCTGACGTGTTTGGGGACTTGTCAGGGTTTGTAACTAATTCTTGCACACTAGGTGTTCCTGAAGAATGTGCAACTACTAGTTTGCAGAACAACCAGAGACCAACAATTTCATCAAATGGCAATGTTCATAAGTGTCGGCAATGTTCACAAACAGAACCAGCCCCCGATCTCTCTTGTCAGATTTGTCGCATTTGGATTCACAGCAAGTGCTCACCCTGGATTGAATCATCATCTAGGCTTGGAGATTGGAAGTGCGGGAATTGCAGGGAATGGCAATAA
Protein sequence

>Msa0258230

MYIPEGPWHCPECKINMIGPTIARGTSLKGAETFGNDLYGQLFMGTCDHLLVLNVKSAEFCHNYYNQNDVRKVIQVLYDSVQHRPLYSSICMAMLQYWNIPESSSRPCVPNGTHLNPESAKIDEDNHKGVNLGNANDTSLPLQTNGDQTGFGKCKGNITSDFVYMGCSYKPQSYINNYMHGDFAASAAASLAILSSEDSRSEGHVSDSKKATPDNPNLLAKAFSLTASRFFWPNSDKKHGEVIRERCAWCLSCKSSVSSKKGCMLNYAATYATKSAAKILSGLAPVRSGEGISPTISTYIIYLEESLHGLVDGPFLSENYRKLWRKQMERATSFSNIKPLLLKLEENIRTIVFSGDWVKLTDGWLVESLTIHSDTSTLGTTQERASCDRCRKQLPIKYTVNKWSENFGWWNDKFTKSVFQRAALPKFMVRKAARQGGMRKILGIVYPDVPEIPKRSRQLVWRAAVEMSRNASQLALQVRYLDFYIRWIDLIRPEYNLQDGKGQDTEVSAFRNANIYDKKFAKGKTSYAIAFESQKHIPSRVRKIAEIEEVPEGEKFWFSEKRIPLYLVKEYEVRNKKESFHKDNLNIASQWHKRRLNAIWKDIFSYLTCKRDNLDLLSCSVCKQCVSFRSALKCSVCKGNCHEGCSIDSTFSTNTDVEFLTTCKQCYHTRLPTQKETVNKPPNSTLLLKGSSLTILKETAPKCDDQIPRSTRENGCRPDMKKVASHSPLETKSSGKKSSWGIIWKKNNNENTGIDFRLKKVLLKGRSSLPQLEPVCHLCHNPYRSDLMYIGCETCTRWYHAEALELEESKIFSVLGFKCCRCRKIKSPVCPYSDLVRKEQVVEQSGSRASKRKHSGAGSSSETLADIRACEPVSPFFPSEAVSEQENNPFPFSLSNVELITEPQLELDAEKSHSQASKKNHSGEDSGSGTLADTRASESTTLIFPAEDVAKPENNPPLFPLSDAELITEPESDAGIERNTISGSGLQKIPTTRHFKPEGDNNSSSGGEVRHAEISTRDEMGNLPAEFLSPFVEHDFGFADFNLLSDFEIVDNEFMDFESETHLSSSELLHLDRSSHFEEADVFGDLSGFVTNSCTLGVPEECATTSLQNNQRPTISSNGNVHKCRQCSQTEPAPDLSCQICRIWIHSKCSPWIESSSRLGDWKCGNCREWQ*