AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0260160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260160 MtrunA17_Chr2g0317761 91.667 48 4 0 1 48 1 48 4.87e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260160 AT5G53800.1 65.868 167 56 1 174 339 185 351 1.82e-73 231

Find 110 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTGGTTACAGATTTA+TGG 0.131415 2_2:-57686722 Msa0260160:intron
CTTCCTACGGCGTCGTTTAT+CGG 0.196052 2_2:+57689967 None:intergenic
ACTAATTTATGGGGAAAGTA+TGG 0.215379 2_2:-57689629 Msa0260160:CDS
ACTTATTGTGGATATGAATT+AGG 0.218029 2_2:-57685661 Msa0260160:three_prime_UTR
AACTCATTTCATGGATATTA+TGG 0.223435 2_2:-57685606 Msa0260160:three_prime_UTR
TGGTTCGGAGTCGGAGTATT+CGG 0.235691 2_2:-57689852 Msa0260160:CDS
GATGAATCGGATTCGGATTC+CGG 0.241858 2_2:-57689914 Msa0260160:CDS
AATGAAGAAGAAGGAGAAAA+AGG 0.242745 2_2:-57689675 Msa0260160:CDS
TTACTTGGACTGATCGAAAT+TGG 0.258824 2_2:-57685369 Msa0260160:three_prime_UTR
ATATGGAGCATCTGTCTAAT+TGG 0.263850 2_2:-57687046 Msa0260160:CDS
CATCAGGGTCCAACCTTCTC+TGG 0.319994 2_2:+57685710 None:intergenic
AAAATGAAAATTTCACATAA+AGG 0.338744 2_2:+57685280 None:intergenic
GAGAGAGGAAGGAGAGGAAA+AGG 0.341565 2_2:-57689814 Msa0260160:CDS
AAGGTGCTGTGACTAATTTA+TGG 0.342345 2_2:-57689640 Msa0260160:CDS
AGAAACGAAGGAGGAGAGAG+AGG 0.352442 2_2:-57689787 Msa0260160:CDS
ATTATGACAAACTCATTTCA+TGG 0.359860 2_2:-57685615 Msa0260160:three_prime_UTR
GGTTCGGAGTCGGAGTATTC+GGG 0.365915 2_2:-57689851 Msa0260160:CDS
ATCGGTTTGTGTGTCTATAT+CGG 0.367357 2_2:+57690042 None:intergenic
GATATATGGCCTGGACAGTT+TGG 0.369205 2_2:+57685417 None:intergenic
CATGGATATTATGGTGTCTT+GGG 0.370504 2_2:-57685597 Msa0260160:three_prime_UTR
TTCGGATTCCGGTTCGGATT+CGG 0.373650 2_2:-57689903 Msa0260160:CDS
GCAGCCTTGTGCATCTTACT+TGG 0.380541 2_2:-57685384 Msa0260160:three_prime_UTR
ACTGTCTACACGGCAGCATC+AGG 0.397203 2_2:+57685694 None:intergenic
GATAGCTTTGAAGCGGGAAA+TGG 0.400627 2_2:-57686020 Msa0260160:CDS
AGGTGCTGTGACTAATTTAT+GGG 0.400642 2_2:-57689639 Msa0260160:CDS
ATCGGATTCGGATTCCGGTT+CGG 0.415782 2_2:-57689909 Msa0260160:CDS
TCATGGATATTATGGTGTCT+TGG 0.418203 2_2:-57685598 Msa0260160:three_prime_UTR
GAAACGGAAAATGAAGAAGA+AGG 0.431893 2_2:-57689684 Msa0260160:CDS
CTCTGACTCCGAATCCGAAC+CGG 0.433692 2_2:+57689895 None:intergenic
TCGAGAAACGTTAACGGTAA+TGG 0.435120 2_2:-57690151 Msa0260160:CDS
TTGAAAACTGTTCGTTCCTT+AGG 0.440826 2_2:+57686421 None:intergenic
GGAGAGTGAGGGAGAGAGGA+AGG 0.442243 2_2:-57689825 Msa0260160:CDS
GAGAAGGAAGAAGGAGAAAG+AGG 0.444737 2_2:-57689726 Msa0260160:CDS
TATGGAGCATCTGTCTAATT+GGG 0.451352 2_2:-57687045 Msa0260160:CDS
GTACAAGCTTGGCAACTTTG+AGG 0.458033 2_2:-57685833 Msa0260160:intron
AGAGAAGAAGAGAAGGAAGA+AGG 0.462903 2_2:-57689735 Msa0260160:CDS
AGAGAAGGAAGAAAGAGAAA+CGG 0.462978 2_2:-57689700 Msa0260160:CDS
AGAGGGAGGAAGAGAAGAGA+AGG 0.464264 2_2:-57689769 Msa0260160:CDS
TGCTTACTACAGGCGTCAAA+TGG 0.465748 2_2:-57686479 Msa0260160:CDS
AAGAGAAAGAGAAGAAGAGA+AGG 0.469323 2_2:-57689742 Msa0260160:CDS
GAAACGAAGGAGGAGAGAGA+GGG 0.470325 2_2:-57689786 Msa0260160:CDS
ACGAAGGAGGAGAGAGAGGG+AGG 0.470950 2_2:-57689783 Msa0260160:CDS
TGAATCCGAACGGTCTGGTT+CGG 0.471389 2_2:-57689867 Msa0260160:CDS
CAGTGATGATGAATCGGATT+CGG 0.475281 2_2:-57689921 Msa0260160:CDS
TTTGGAGATGCTCGCTCACT+TGG 0.478899 2_2:+57685435 None:intergenic
GCCGTCGTCTTTCTCTGAGC+TGG 0.479004 2_2:+57690108 None:intergenic
TTTGCTAAACTGTAAGTCAC+TGG 0.481956 2_2:+57688259 None:intergenic
CAAAGTTGCCAAGCTTGTAC+TGG 0.483292 2_2:+57685836 None:intergenic
AGGAGAAAGAGGAAGAGAGA+AGG 0.485687 2_2:-57689715 Msa0260160:CDS
GAGGAAGGAGAGGAAAAGGA+AGG 0.488228 2_2:-57689810 Msa0260160:CDS
ATACAGCAGTGATGATGAAT+CGG 0.488450 2_2:-57689927 Msa0260160:CDS
GGGAGGAAGAGAAGAGAAGG+AGG 0.491070 2_2:-57689766 Msa0260160:CDS
AAAGGAAGGAGAAACGAAGG+AGG 0.491654 2_2:-57689796 Msa0260160:CDS
GGAAAAGGAAGGAGAAACGA+AGG 0.491721 2_2:-57689799 Msa0260160:CDS
ACGGCGTCGTTTATCGGAAT+CGG 0.494732 2_2:+57689973 None:intergenic
TGCGATGAATCCGAACGGTC+TGG 0.496633 2_2:-57689872 Msa0260160:CDS
TGAAAGAGCAAGCACAACTC+AGG 0.501356 2_2:-57685873 Msa0260160:CDS
CTCCGTCGAAAAGAGATTCA+AGG 0.501886 2_2:-57690081 Msa0260160:CDS
TTGATAGCACACTGTAGAAA+AGG 0.502977 2_2:+57685509 None:intergenic
CTAATTTATGGGGAAAGTAT+GGG 0.505958 2_2:-57689628 Msa0260160:CDS
AAAATGTCGAGAAACGTTAA+CGG 0.506060 2_2:-57690157 Msa0260160:CDS
GTGAGGGAGAGAGGAAGGAG+AGG 0.507055 2_2:-57689820 Msa0260160:CDS
TGAGCTACTATGCTTTCTAT+CGG 0.516491 2_2:+57690024 None:intergenic
GGAGTCGGAGTATTCGGGTT+CGG 0.516960 2_2:-57689846 Msa0260160:CDS
GGGATATAATATGCTGTGGA+TGG 0.518454 2_2:-57685577 Msa0260160:three_prime_UTR
CGACTCCGAACCAGACCGTT+CGG 0.519381 2_2:+57689862 None:intergenic
AGCAAGTGATAGCTTTGAAG+CGG 0.519558 2_2:-57686027 Msa0260160:CDS
AGGCCATATATCCTATGAAA+AGG 0.520025 2_2:-57685406 Msa0260160:three_prime_UTR
GGATATAATATGCTGTGGAT+GGG 0.524338 2_2:-57685576 Msa0260160:three_prime_UTR
AGCACAACTCAGGGAGGAGA+TGG 0.524634 2_2:-57685863 Msa0260160:CDS
CGTTAACGGTAATGGTGCTC+CGG 0.531901 2_2:-57690143 Msa0260160:CDS
TTATAAGAAGGTTCAGCCTA+AGG 0.534176 2_2:-57686437 Msa0260160:CDS
CGAGCATCTCCAAACTGTCC+AGG 0.536605 2_2:-57685426 Msa0260160:three_prime_UTR
GTTCGGAGAGTGAGGGAGAG+AGG 0.550114 2_2:-57689829 Msa0260160:CDS
ACAGTCTTGATGCTTACTAC+AGG 0.557804 2_2:-57686489 Msa0260160:CDS
GATATAATATGCTGTGGATG+GGG 0.560278 2_2:-57685575 Msa0260160:three_prime_UTR
ATGGCTTACCAGTACAAGCT+TGG 0.568371 2_2:-57685844 Msa0260160:CDS
CTGCTGCTGCAATCCAGAGA+AGG 0.573865 2_2:-57685723 Msa0260160:CDS
TGCTGCAATCCAGAGAAGGT+TGG 0.578757 2_2:-57685719 Msa0260160:CDS
GTCGTCTTTCTCTGAGCTGG+TGG 0.580374 2_2:+57690111 None:intergenic
GCAAGTGATAGCTTTGAAGC+GGG 0.581280 2_2:-57686026 Msa0260160:CDS
GCGGGAAATGGAAAGTGGAA+TGG 0.583277 2_2:-57686008 Msa0260160:intron
TTGAAGCGGGAAATGGAAAG+TGG 0.584317 2_2:-57686013 Msa0260160:CDS
ATAGATGTGTTGCCTTGTGA+TGG 0.587765 2_2:-57685479 Msa0260160:three_prime_UTR
TGTGGATATGAATTAGGTGA+TGG 0.588430 2_2:-57685655 Msa0260160:three_prime_UTR
GAAAGAGCAAGCACAACTCA+GGG 0.590934 2_2:-57685872 Msa0260160:CDS
CTGTCTACACGGCAGCATCA+GGG 0.591136 2_2:+57685695 None:intergenic
TTCTGGTTACAGATTTATGG+AGG 0.597616 2_2:-57686719 Msa0260160:intron
CGAACGGTCTGGTTCGGAGT+CGG 0.599371 2_2:-57689861 Msa0260160:CDS
GTGGATATGAATTAGGTGAT+GGG 0.602212 2_2:-57685654 Msa0260160:three_prime_UTR
GTGTAGGACATAACTTATTG+TGG 0.628359 2_2:-57685673 Msa0260160:three_prime_UTR
TCAATGACGAAGAACAGCGC+AGG 0.636477 2_2:-57686402 Msa0260160:intron
GTATTCGGGTTCGGAGAGTG+AGG 0.636966 2_2:-57689837 Msa0260160:CDS
ACAGTATGCACTATGTTCTG+AGG 0.640263 2_2:+57685214 None:intergenic
CAGTCCAAGTAAGATGCACA+AGG 0.642881 2_2:+57685380 None:intergenic
TTATTAGAGAAACTGATATG+TGG 0.644513 2_2:-57689604 Msa0260160:intron
ATTCCGATAAACGACGCCGT+AGG 0.645227 2_2:-57689970 Msa0260160:CDS
TATGTCCTACACTGTCTACA+CGG 0.653486 2_2:+57685684 None:intergenic
GGTGCTGTGACTAATTTATG+GGG 0.653975 2_2:-57689638 Msa0260160:CDS
TCTTGGGATATAATATGCTG+TGG 0.656062 2_2:-57685581 Msa0260160:three_prime_UTR
ACCAGCTCAGAGAAAGACGA+CGG 0.656673 2_2:-57690109 Msa0260160:CDS
TATTCGGGTTCGGAGAGTGA+GGG 0.657185 2_2:-57689836 Msa0260160:CDS
AAGACAAAACTTCCATCACA+AGG 0.671610 2_2:+57685467 None:intergenic
CTGTAGAAAAGGCGTCAATG+TGG 0.671743 2_2:+57685520 None:intergenic
TGGATATGAATTAGGTGATG+GGG 0.674471 2_2:-57685653 Msa0260160:three_prime_UTR
CAGAGTGCGATGAATCCGAA+CGG 0.702948 2_2:-57689877 Msa0260160:CDS
AGAGCAAGCACAACTCAGGG+AGG 0.714698 2_2:-57685869 Msa0260160:CDS
ATGAGTTTGTCATAATGACA+TGG 0.740021 2_2:+57685622 None:intergenic
TGCTGCCGTGTAGACAGTGT+AGG 0.744540 2_2:-57685689 Msa0260160:exon
GTAGGAAGAGAAAATCACGT+CGG 0.815812 2_2:-57689952 Msa0260160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAGAAAATATAATAT+AGG + chr2_2:57689194-57689213 None:intergenic 10.0%
!!! TCATATGTTTAATTTTCTTA+TGG - chr2_2:57687423-57687442 Msa0260160:intron 15.0%
!! AAAATACAGCAAATTAAAAT+TGG + chr2_2:57688297-57688316 None:intergenic 15.0%
!! TATGTTTATATTTACTCTTA+AGG - chr2_2:57688483-57688502 Msa0260160:intron 15.0%
!! ATCATTATTGTATATTCATT+TGG - chr2_2:57688824-57688843 Msa0260160:intron 15.0%
!! TCATTATTGTATATTCATTT+GGG - chr2_2:57688825-57688844 Msa0260160:intron 15.0%
!!! TTTTGTTAATTAATGACAAA+AGG - chr2_2:57689431-57689450 Msa0260160:intron 15.0%
!! AAAATGAAAATTTCACATAA+AGG + chr2_2:57690095-57690114 None:intergenic 15.0%
!! ATTGAATTATCAGAGTATAA+TGG - chr2_2:57685847-57685866 Msa0260160:CDS 20.0%
!!! AGAAGTATAAGTAATAACTT+GGG - chr2_2:57686511-57686530 Msa0260160:intron 20.0%
!! GAATAATAATAACTAGTAAC+AGG - chr2_2:57686767-57686786 Msa0260160:intron 20.0%
!! AGGATAACTTATATAATGTA+GGG - chr2_2:57686998-57687017 Msa0260160:intron 20.0%
!!! AGTTGATATAGTTTAAACAT+AGG - chr2_2:57687051-57687070 Msa0260160:CDS 20.0%
!!! TTTAGCAAAATTTTATATCG+AGG - chr2_2:57687127-57687146 Msa0260160:intron 20.0%
!!! TTAATTTGCTGTATTTTAAC+AGG - chr2_2:57688300-57688319 Msa0260160:intron 20.0%
!!! TGTATTTTAACAGGTAAATA+TGG - chr2_2:57688309-57688328 Msa0260160:intron 20.0%
!! AAAATTAAGTAAAAGAGAGA+AGG - chr2_2:57688402-57688421 Msa0260160:intron 20.0%
!! AAAGGAAAAGAAAAAAAAAG+TGG - chr2_2:57688429-57688448 Msa0260160:intron 20.0%
!! TATTCCTATTCATAAAAATG+AGG + chr2_2:57688749-57688768 None:intergenic 20.0%
!! TAACTAATGTAATCTTAACT+TGG - chr2_2:57689014-57689033 Msa0260160:intron 20.0%
! TTATTAGAGAAACTGATATG+TGG - chr2_2:57685768-57685787 Msa0260160:intron 25.0%
! AGTATAATGGTTGAATTATG+TGG - chr2_2:57685860-57685879 Msa0260160:CDS 25.0%
! ATAGTGTATTATGAAGTTCT+TGG - chr2_2:57685889-57685908 Msa0260160:intron 25.0%
!!! TGGTTAATGTTTTGTTGATT+TGG - chr2_2:57685909-57685928 Msa0260160:intron 25.0%
! TTGTATGTACTGAAATATCA+TGG - chr2_2:57685950-57685969 Msa0260160:intron 25.0%
! TGTATGTACTGAAATATCAT+GGG - chr2_2:57685951-57685970 Msa0260160:intron 25.0%
! TTGTTAGTGTATAAGATTGT+AGG - chr2_2:57686001-57686020 Msa0260160:intron 25.0%
! AATATTAACAGCATTCAGAT+TGG - chr2_2:57686049-57686068 Msa0260160:CDS 25.0%
!! GTATGTGAATCATTTAAGAT+TGG - chr2_2:57686488-57686507 Msa0260160:CDS 25.0%
!! GAGAAGTATAAGTAATAACT+TGG - chr2_2:57686510-57686529 Msa0260160:intron 25.0%
! TGACATCCTAATAATATAGA+GGG - chr2_2:57686587-57686606 Msa0260160:intron 25.0%
!!! GTAGAATTTGTTATTGTAGA+AGG - chr2_2:57686643-57686662 Msa0260160:intron 25.0%
! GCATTTGAATCATGTAATAT+TGG - chr2_2:57686740-57686759 Msa0260160:intron 25.0%
!!! TTTCATTTTTTGTCCTGTTT+TGG + chr2_2:57686815-57686834 None:intergenic 25.0%
! GCTGTAAAGAATCTTTATTA+TGG - chr2_2:57686875-57686894 Msa0260160:intron 25.0%
!! ATTGCAAATTGTTGTTGATA+TGG + chr2_2:57686911-57686930 None:intergenic 25.0%
! CAGGATAACTTATATAATGT+AGG - chr2_2:57686997-57687016 Msa0260160:intron 25.0%
! ATCAAGTCAACATGTTAAAA+TGG + chr2_2:57687396-57687415 None:intergenic 25.0%
!!! AACATGTTGACTTGATATTA+TGG - chr2_2:57687400-57687419 Msa0260160:intron 25.0%
! TTTAAGTACCTACATTCTAA+AGG - chr2_2:57687524-57687543 Msa0260160:intron 25.0%
!! AAATCATCAGCCATTATTTT+TGG - chr2_2:57687559-57687578 Msa0260160:intron 25.0%
!! ATCTTATTTCCAGTATATGT+CGG - chr2_2:57688111-57688130 Msa0260160:intron 25.0%
!! ATCTTTCACCCTTTATATTT+TGG - chr2_2:57688230-57688249 Msa0260160:intron 25.0%
! CTAGAATGCCAAAATATAAA+GGG + chr2_2:57688241-57688260 None:intergenic 25.0%
! ACTAGAATGCCAAAATATAA+AGG + chr2_2:57688242-57688261 None:intergenic 25.0%
!!! AATTTTTTTCTTTGAGTTGC+AGG + chr2_2:57688388-57688407 None:intergenic 25.0%
! TTATTCACTTATTCATCACT+AGG - chr2_2:57688576-57688595 Msa0260160:intron 25.0%
! GTTAATTTCTCTCTAATTTC+TGG - chr2_2:57688636-57688655 Msa0260160:intron 25.0%
!!! AATTTCTGGTTACAGATTTA+TGG - chr2_2:57688650-57688669 Msa0260160:intron 25.0%
!!! TTGTCCTCATTTTTATGAAT+AGG - chr2_2:57688742-57688761 Msa0260160:intron 25.0%
! CAAATGGTTTAATGTTTATG+TGG - chr2_2:57688852-57688871 Msa0260160:intron 25.0%
! AATGGAAAAAGAGATGAAAA+AGG - chr2_2:57688911-57688930 Msa0260160:intron 25.0%
! ATGGAAAAAGAGATGAAAAA+GGG - chr2_2:57688912-57688931 Msa0260160:intron 25.0%
!!! ATCTTAACTTGGTTTTCTTT+TGG - chr2_2:57689025-57689044 Msa0260160:intron 25.0%
! TAAACAATAGTAAAGCATGT+AGG + chr2_2:57689094-57689113 None:intergenic 25.0%
!! ATATAGGTAGACTTTTACAA+TGG + chr2_2:57689178-57689197 None:intergenic 25.0%
!!! CTTTCATGATCATTTTTCAA+TGG - chr2_2:57689276-57689295 Msa0260160:intron 25.0%
!! TTTTTGTGCAATAATTTTGC+AGG - chr2_2:57689467-57689486 Msa0260160:intron 25.0%
! AAAAAGTTTGCAGCAAATTT+AGG + chr2_2:57689618-57689637 None:intergenic 25.0%
! ACTTATTGTGGATATGAATT+AGG - chr2_2:57689711-57689730 Msa0260160:CDS 25.0%
! ATTATGACAAACTCATTTCA+TGG - chr2_2:57689757-57689776 Msa0260160:CDS 25.0%
! AACTCATTTCATGGATATTA+TGG - chr2_2:57689766-57689785 Msa0260160:CDS 25.0%
! TATGGTTTAGAAAAAAAGTG+AGG - chr2_2:57690135-57690154 Msa0260160:CDS 25.0%
AAAATGTCGAGAAACGTTAA+CGG - chr2_2:57685215-57685234 Msa0260160:three_prime_UTR 30.0%
AATGAAGAAGAAGGAGAAAA+AGG - chr2_2:57685697-57685716 Msa0260160:exon 30.0%
ACTAATTTATGGGGAAAGTA+TGG - chr2_2:57685743-57685762 Msa0260160:intron 30.0%
! CTAATTTATGGGGAAAGTAT+GGG - chr2_2:57685744-57685763 Msa0260160:intron 30.0%
! GATATGTGGTAAGAATTTTC+TGG - chr2_2:57685782-57685801 Msa0260160:intron 30.0%
!! TGGAATGTGAAAGTTTTTAG+TGG - chr2_2:57685976-57685995 Msa0260160:intron 30.0%
TTGATTGAAAGATGTCAGAT+TGG - chr2_2:57686026-57686045 Msa0260160:CDS 30.0%
GTTATTGTTATGCTTTGATC+CGG - chr2_2:57686071-57686090 Msa0260160:intron 30.0%
CTAACTCATGATTCAGTTTA+AGG + chr2_2:57686245-57686264 None:intergenic 30.0%
TATAAGTAATAACTTGGGAC+AGG - chr2_2:57686516-57686535 Msa0260160:intron 30.0%
TCAATATCCAATCACCTATT+TGG + chr2_2:57686565-57686584 None:intergenic 30.0%
GTGACATCCTAATAATATAG+AGG - chr2_2:57686586-57686605 Msa0260160:intron 30.0%
GACATCCTAATAATATAGAG+GGG - chr2_2:57686588-57686607 Msa0260160:intron 30.0%
TTAAACTGGAACCTATATTC+AGG + chr2_2:57686940-57686959 None:intergenic 30.0%
GTTCCAGTTTAATAATGTCT+TGG - chr2_2:57686948-57686967 Msa0260160:intron 30.0%
CTTCCAAGACATTATTAAAC+TGG + chr2_2:57686954-57686973 None:intergenic 30.0%
AATAATGTCTTGGAAGATGA+AGG - chr2_2:57686958-57686977 Msa0260160:intron 30.0%
!! TCAGTTTGTTAGTATGTGAT+TGG - chr2_2:57687210-57687229 Msa0260160:intron 30.0%
AGTATGTGATTGGATATTGA+AGG - chr2_2:57687220-57687239 Msa0260160:intron 30.0%
GCATTAATATCCTTTGAACT+AGG - chr2_2:57687619-57687638 Msa0260160:intron 30.0%
!!! TTACCTTGTTTTTACACAAG+AGG + chr2_2:57687732-57687751 None:intergenic 30.0%
TCTTGTGTAAAAACAAGGTA+AGG - chr2_2:57687731-57687750 Msa0260160:intron 30.0%
! GTTTTTGCAAAAATGAACAG+AGG + chr2_2:57688017-57688036 None:intergenic 30.0%
TTTGCAAAAACTCAAACTAG+TGG - chr2_2:57688026-57688045 Msa0260160:intron 30.0%
TAATCTGTGTGAAGAAAACA+AGG + chr2_2:57688088-57688107 None:intergenic 30.0%
! TGCATATTTTTCTTGCCTAT+TGG - chr2_2:57688171-57688190 Msa0260160:intron 30.0%
TATTATGCACTTCTATTGAG+AGG + chr2_2:57688211-57688230 None:intergenic 30.0%
ATTTGCATGTCATGTTTACA+TGG - chr2_2:57688264-57688283 Msa0260160:CDS 30.0%
TTAAGTAAAAGAGAGAAGGA+TGG - chr2_2:57688406-57688425 Msa0260160:intron 30.0%
!! TATTCATTTGGGTTGACAAA+TGG - chr2_2:57688836-57688855 Msa0260160:intron 30.0%
GATGAAAAAGGGTTATAAGA+AGG - chr2_2:57688923-57688942 Msa0260160:intron 30.0%
CAAATTGCATAAAAGTGATC+TGG + chr2_2:57689400-57689419 None:intergenic 30.0%
! TGCAAACTTTTTACCACTAT+AGG - chr2_2:57689626-57689645 Msa0260160:CDS 30.0%
ATGAGTTTGTCATAATGACA+TGG + chr2_2:57689753-57689772 None:intergenic 30.0%
! TTCCTTGAATCTCTTTTCGA+CGG + chr2_2:57685296-57685315 None:intergenic 35.0%
!! ATCGGTTTGTGTGTCTATAT+CGG + chr2_2:57685333-57685352 None:intergenic 35.0%
TGAGCTACTATGCTTTCTAT+CGG + chr2_2:57685351-57685370 None:intergenic 35.0%
! ATACAGCAGTGATGATGAAT+CGG - chr2_2:57685445-57685464 Msa0260160:three_prime_UTR 35.0%
AAGAGAAAGAGAAGAAGAGA+AGG - chr2_2:57685630-57685649 Msa0260160:three_prime_UTR 35.0%
AGAGAAGGAAGAAAGAGAAA+CGG - chr2_2:57685672-57685691 Msa0260160:three_prime_UTR 35.0%
GAAACGGAAAATGAAGAAGA+AGG - chr2_2:57685688-57685707 Msa0260160:exon 35.0%
!! AAGGTGCTGTGACTAATTTA+TGG - chr2_2:57685732-57685751 Msa0260160:intron 35.0%
! AGGTGCTGTGACTAATTTAT+GGG - chr2_2:57685733-57685752 Msa0260160:intron 35.0%
GTACTGAAATATCATGGGAT+TGG - chr2_2:57685956-57685975 Msa0260160:intron 35.0%
AGTTAGCGATGATTTCTTCT+AGG - chr2_2:57686259-57686278 Msa0260160:intron 35.0%
GTTAGCGATGATTTCTTCTA+GGG - chr2_2:57686260-57686279 Msa0260160:intron 35.0%
!! TTCTTCTAGGGTTTCTCATA+TGG - chr2_2:57686272-57686291 Msa0260160:intron 35.0%
TTAAGAGAGCTGTTCATCTA+GGG + chr2_2:57686301-57686320 None:intergenic 35.0%
GTTATGTGATCATCTTCTCA+CGG - chr2_2:57686336-57686355 Msa0260160:intron 35.0%
TTAAATGCATGTTCCAGACT+GGG + chr2_2:57686462-57686481 None:intergenic 35.0%
CTAGACCCCTCTATATTATT+AGG + chr2_2:57686596-57686615 None:intergenic 35.0%
CTAATAATATAGAGGGGTCT+AGG - chr2_2:57686594-57686613 Msa0260160:intron 35.0%
GCAATTTCTCTCCTGAATAT+AGG - chr2_2:57686926-57686945 Msa0260160:intron 35.0%
GCAATACACATGAATTTCTG+AGG + chr2_2:57687031-57687050 None:intergenic 35.0%
TTTGCTAAACTGTAAGTCAC+TGG + chr2_2:57687116-57687135 None:intergenic 35.0%
! TAGGTCTTTAGCTTCTAAAC+AGG + chr2_2:57687164-57687183 None:intergenic 35.0%
GTTTAGAAGCTAAAGACCTA+CGG - chr2_2:57687164-57687183 Msa0260160:intron 35.0%
TTTAGAAGCTAAAGACCTAC+GGG - chr2_2:57687165-57687184 Msa0260160:intron 35.0%
GGAACAACCTAATGTTATAG+CGG - chr2_2:57687241-57687260 Msa0260160:intron 35.0%
GAACAACCTAATGTTATAGC+GGG - chr2_2:57687242-57687261 Msa0260160:intron 35.0%
!! TTTCTAAGACTACAGTCACA+TGG - chr2_2:57687333-57687352 Msa0260160:intron 35.0%
GCAAACTCAGCCAAAAATAA+TGG + chr2_2:57687572-57687591 None:intergenic 35.0%
ACCCTAGTTCAAAGGATAAA+GGG + chr2_2:57687831-57687850 None:intergenic 35.0%
AACCCTAGTTCAAAGGATAA+AGG + chr2_2:57687832-57687851 None:intergenic 35.0%
! TATCCTTTGAACTAGGGTTT+TGG - chr2_2:57687833-57687852 Msa0260160:intron 35.0%
ATACCAAAACCCTAGTTCAA+AGG + chr2_2:57687839-57687858 None:intergenic 35.0%
TTCATAACGTCACTCAAACA+AGG + chr2_2:57687863-57687882 None:intergenic 35.0%
AGTGACGTTATGAATATTGC+AGG - chr2_2:57687869-57687888 Msa0260160:intron 35.0%
TGGCTTCTTTATAACATCCT+GGG - chr2_2:57688046-57688065 Msa0260160:intron 35.0%
TCAATGTTACCGACATATAC+TGG + chr2_2:57688123-57688142 None:intergenic 35.0%
! ATATGGAGCATCTGTCTAAT+TGG - chr2_2:57688326-57688345 Msa0260160:intron 35.0%
! TATGGAGCATCTGTCTAATT+GGG - chr2_2:57688327-57688346 Msa0260160:intron 35.0%
!! TTTCTTTGAGTTGCAGGATT+AGG + chr2_2:57688382-57688401 None:intergenic 35.0%
TAAAAGAGAGAAGGATGGAA+AGG - chr2_2:57688411-57688430 Msa0260160:intron 35.0%
TGAATAATCAGCGAGTCAAT+AGG + chr2_2:57688563-57688582 None:intergenic 35.0%
! TTCTGGTTACAGATTTATGG+AGG - chr2_2:57688653-57688672 Msa0260160:intron 35.0%
!!! CTAGAGCTTACTTTTTGGAA+GGG + chr2_2:57688698-57688717 None:intergenic 35.0%
!! TTCTGCTAGAGCTTACTTTT+TGG + chr2_2:57688703-57688722 None:intergenic 35.0%
GCTCTAGCAGAAGTTTAATT+TGG - chr2_2:57688711-57688730 Msa0260160:intron 35.0%
TGGTTTAATGTTTATGTGGC+AGG - chr2_2:57688856-57688875 Msa0260160:intron 35.0%
TTATAAGAAGGTTCAGCCTA+AGG - chr2_2:57688935-57688954 Msa0260160:intron 35.0%
TTGAAAACTGTTCGTTCCTT+AGG + chr2_2:57688954-57688973 None:intergenic 35.0%
AATAGGGGTAGAGTAAGTTT+GGG + chr2_2:57689063-57689082 None:intergenic 35.0%
ATGTAGGTAGCTAACAATAG+GGG + chr2_2:57689078-57689097 None:intergenic 35.0%
CATGTAGGTAGCTAACAATA+GGG + chr2_2:57689079-57689098 None:intergenic 35.0%
! TTCTTTTACTGCACTTCAAG+TGG - chr2_2:57689204-57689223 Msa0260160:intron 35.0%
GAGACTTAAGCTAAAAACGA+AGG + chr2_2:57689594-57689613 None:intergenic 35.0%
GTGTAGGACATAACTTATTG+TGG - chr2_2:57689699-57689718 Msa0260160:CDS 35.0%
TGTGGATATGAATTAGGTGA+TGG - chr2_2:57689717-57689736 Msa0260160:CDS 35.0%
GTGGATATGAATTAGGTGAT+GGG - chr2_2:57689718-57689737 Msa0260160:CDS 35.0%
TGGATATGAATTAGGTGATG+GGG - chr2_2:57689719-57689738 Msa0260160:CDS 35.0%
TCATGGATATTATGGTGTCT+TGG - chr2_2:57689774-57689793 Msa0260160:CDS 35.0%
CATGGATATTATGGTGTCTT+GGG - chr2_2:57689775-57689794 Msa0260160:CDS 35.0%
TCTTGGGATATAATATGCTG+TGG - chr2_2:57689791-57689810 Msa0260160:CDS 35.0%
GGATATAATATGCTGTGGAT+GGG - chr2_2:57689796-57689815 Msa0260160:CDS 35.0%
GATATAATATGCTGTGGATG+GGG - chr2_2:57689797-57689816 Msa0260160:CDS 35.0%
!! GGTTTTGTCTATTGCAATAG+AGG - chr2_2:57689818-57689837 Msa0260160:CDS 35.0%
! TTGATAGCACACTGTAGAAA+AGG + chr2_2:57689866-57689885 None:intergenic 35.0%
AAGACAAAACTTCCATCACA+AGG + chr2_2:57689908-57689927 None:intergenic 35.0%
! TTTTCATAGGATATATGGCC+TGG + chr2_2:57689967-57689986 None:intergenic 35.0%
AGGCCATATATCCTATGAAA+AGG - chr2_2:57689966-57689985 Msa0260160:CDS 35.0%
! CTGCCTTTTCATAGGATATA+TGG + chr2_2:57689972-57689991 None:intergenic 35.0%
TTACTTGGACTGATCGAAAT+TGG - chr2_2:57690003-57690022 Msa0260160:CDS 35.0%
! ATGATGCTTTTGCATGTCTA+TGG - chr2_2:57690117-57690136 Msa0260160:CDS 35.0%
TCGAGAAACGTTAACGGTAA+TGG - chr2_2:57685221-57685240 Msa0260160:three_prime_UTR 40.0%
! GACGTGATTTTCTCTTCCTA+CGG + chr2_2:57685421-57685440 None:intergenic 40.0%
GTAGGAAGAGAAAATCACGT+CGG - chr2_2:57685420-57685439 Msa0260160:three_prime_UTR 40.0%
! CAGTGATGATGAATCGGATT+CGG - chr2_2:57685451-57685470 Msa0260160:three_prime_UTR 40.0%
AGAGAAGAAGAGAAGGAAGA+AGG - chr2_2:57685637-57685656 Msa0260160:three_prime_UTR 40.0%
AAGAAGGAGAAAAAGGAGAG+AGG - chr2_2:57685704-57685723 Msa0260160:CDS 40.0%
AGAAGGAGAAAAAGGAGAGA+GGG - chr2_2:57685705-57685724 Msa0260160:CDS 40.0%
AAAAAGGAGAGAGGGAAGAA+AGG - chr2_2:57685713-57685732 Msa0260160:CDS 40.0%
! GGTGCTGTGACTAATTTATG+GGG - chr2_2:57685734-57685753 Msa0260160:intron 40.0%
CTCAGGATCAAGTAAGTGAT+TGG - chr2_2:57686182-57686201 Msa0260160:intron 40.0%
CTTAAGAGAGCTGTTCATCT+AGG + chr2_2:57686302-57686321 None:intergenic 40.0%
ATGCGGACCATGATATATCA+TGG + chr2_2:57686409-57686428 None:intergenic 40.0%
ACCAATGAAACGGATCAATG+CGG + chr2_2:57686426-57686445 None:intergenic 40.0%
CATTGATCCGTTTCATTGGT+GGG - chr2_2:57686426-57686445 Msa0260160:CDS 40.0%
GTTAAATGCATGTTCCAGAC+TGG + chr2_2:57686463-57686482 None:intergenic 40.0%
TGTTCTCGTGACATCCAAAT+AGG - chr2_2:57686548-57686567 Msa0260160:intron 40.0%
GTGACATCCAAATAGGTGAT+TGG - chr2_2:57686555-57686574 Msa0260160:intron 40.0%
TAATATAGAGGGGTCTAGGA+AGG - chr2_2:57686598-57686617 Msa0260160:intron 40.0%
AATATAGAGGGGTCTAGGAA+GGG - chr2_2:57686599-57686618 Msa0260160:intron 40.0%
TGTTCACTTGACACCAAAAC+AGG - chr2_2:57686799-57686818 Msa0260160:intron 40.0%
TCTTTACAGCATGCTGATAG+TGG + chr2_2:57686865-57686884 None:intergenic 40.0%
!! CTAATGTTATAGCGGGTCTA+GGG - chr2_2:57687249-57687268 Msa0260160:intron 40.0%
ATCCACTGTAGACATATTGC+AGG - chr2_2:57687281-57687300 Msa0260160:intron 40.0%
CCTCTTGCAAATGCAAACTA+AGG + chr2_2:57687310-57687329 None:intergenic 40.0%
!! CCTTAGTTTGCATTTGCAAG+AGG - chr2_2:57687307-57687326 Msa0260160:intron 40.0%
CAGCCTCTTGTGTAAAAACA+AGG - chr2_2:57687726-57687745 Msa0260160:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr2_2:57687757-57687776 Msa0260160:intron 40.0%
TGCCCTTTATCCTTTGAACT+AGG - chr2_2:57687826-57687845 Msa0260160:intron 40.0%
GCCCTTTATCCTTTGAACTA+GGG - chr2_2:57687827-57687846 Msa0260160:intron 40.0%
! TTCCTCTTCCTTTTTCTGTG+TGG - chr2_2:57687990-57688009 Msa0260160:intron 40.0%
GTGGCTTCTTTATAACATCC+TGG - chr2_2:57688045-57688064 Msa0260160:intron 40.0%
TCTTTATAACATCCTGGGAC+TGG - chr2_2:57688051-57688070 Msa0260160:intron 40.0%
CTTTATAACATCCTGGGACT+GGG - chr2_2:57688052-57688071 Msa0260160:intron 40.0%
GACAAGAAATGCAGTCCAAT+AGG + chr2_2:57688189-57688208 None:intergenic 40.0%
! TTAAGGTGCCACAAGAGAAA+AGG - chr2_2:57688500-57688519 Msa0260160:intron 40.0%
! ATGAGCATCCTTTTCTCTTG+TGG + chr2_2:57688511-57688530 None:intergenic 40.0%
!!! GCTAGAGCTTACTTTTTGGA+AGG + chr2_2:57688699-57688718 None:intergenic 40.0%
ACAGTCTTGATGCTTACTAC+AGG - chr2_2:57688883-57688902 Msa0260160:intron 40.0%
CAATAGGGGTAGAGTAAGTT+TGG + chr2_2:57689064-57689083 None:intergenic 40.0%
GCATGTAGGTAGCTAACAAT+AGG + chr2_2:57689080-57689099 None:intergenic 40.0%
GAAGAGTTGACAGAGTGAAA+AGG + chr2_2:57689153-57689172 None:intergenic 40.0%
TTGCAACATTTCTTGTCTGC+AGG + chr2_2:57689303-57689322 None:intergenic 40.0%
GCAAGTACGTGAAAAACAGA+AGG - chr2_2:57689319-57689338 Msa0260160:intron 40.0%
!! AGCAAGTGATAGCTTTGAAG+CGG - chr2_2:57689345-57689364 Msa0260160:intron 40.0%
TATGTCCTACACTGTCTACA+CGG + chr2_2:57689691-57689710 None:intergenic 40.0%
GGGATATAATATGCTGTGGA+TGG - chr2_2:57689795-57689814 Msa0260160:CDS 40.0%
ATAGATGTGTTGCCTTGTGA+TGG - chr2_2:57689893-57689912 Msa0260160:CDS 40.0%
ACAGTATGCACTATGTTCTG+AGG + chr2_2:57690161-57690180 None:intergenic 40.0%
CTCCGTCGAAAAGAGATTCA+AGG - chr2_2:57685291-57685310 Msa0260160:three_prime_UTR 45.0%
GATGAATCGGATTCGGATTC+CGG - chr2_2:57685458-57685477 Msa0260160:three_prime_UTR 45.0%
GGAAAAGGAAGGAGAAACGA+AGG - chr2_2:57685573-57685592 Msa0260160:three_prime_UTR 45.0%
AAAGGAAGGAGAAACGAAGG+AGG - chr2_2:57685576-57685595 Msa0260160:three_prime_UTR 45.0%
GAGAAGGAAGAAGGAGAAAG+AGG - chr2_2:57685646-57685665 Msa0260160:three_prime_UTR 45.0%
AGGAGAAAGAGGAAGAGAGA+AGG - chr2_2:57685657-57685676 Msa0260160:three_prime_UTR 45.0%
TGTTATGCTTTGATCCGGAG+TGG - chr2_2:57686076-57686095 Msa0260160:intron 45.0%
GTGTACTTGCAAACACTCTC+AGG - chr2_2:57686165-57686184 Msa0260160:intron 45.0%
! AGTGATTGGTCGAGAGTGTA+AGG - chr2_2:57686196-57686215 Msa0260160:intron 45.0%
! GTCGAGAGTGTAAGGTTGTA+GGG - chr2_2:57686204-57686223 Msa0260160:intron 45.0%
GGCGTCTCCATGATATATCA+TGG - chr2_2:57686399-57686418 Msa0260160:intron 45.0%
! TCCGCATTGATCCGTTTCAT+TGG - chr2_2:57686422-57686441 Msa0260160:CDS 45.0%
! GCATTGATCCGTTTCATTGG+TGG - chr2_2:57686425-57686444 Msa0260160:CDS 45.0%
ATATAGAGGGGTCTAGGAAG+GGG - chr2_2:57686600-57686619 Msa0260160:intron 45.0%
AGGTAGTTGTTGACACAAGC+AGG - chr2_2:57686978-57686997 Msa0260160:intron 45.0%
GAATATGCACCAGCTGTTGA+TGG - chr2_2:57687073-57687092 Msa0260160:intron 45.0%
TGCAACAAACCATCAACAGC+TGG + chr2_2:57687085-57687104 None:intergenic 45.0%
CCTAGACCCGCTATAACATT+AGG + chr2_2:57687251-57687270 None:intergenic 45.0%
!! CCTAATGTTATAGCGGGTCT+AGG - chr2_2:57687248-57687267 Msa0260160:intron 45.0%
AGCCTGCAATATGTCTACAG+TGG + chr2_2:57687286-57687305 None:intergenic 45.0%
!! CAGCACGACCTTTAGAATGT+AGG + chr2_2:57687535-57687554 None:intergenic 45.0%
! GAGGCTGTTTCCTAGTTCAA+AGG + chr2_2:57687632-57687651 None:intergenic 45.0%
GTTGTTGTCATGTGACCGTA+AGG - chr2_2:57687681-57687700 Msa0260160:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr2_2:57687721-57687740 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr2_2:57687753-57687772 Msa0260160:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr2_2:57687756-57687775 Msa0260160:intron 45.0%
TCAAAGGATAAAGGGCAACC+CGG + chr2_2:57687823-57687842 None:intergenic 45.0%
CTTAACTTCTGCCAACCATG+CGG + chr2_2:57687914-57687933 None:intergenic 45.0%
ATGGTTGGCAGAAGTTAAGC+TGG - chr2_2:57687915-57687934 Msa0260160:intron 45.0%
GACCACACAGAAAAAGGAAG+AGG + chr2_2:57687995-57688014 None:intergenic 45.0%
ACAGAGGACCACACAGAAAA+AGG + chr2_2:57688001-57688020 None:intergenic 45.0%
GCGAGTCAATAGGTCAGTTA+AGG + chr2_2:57688553-57688572 None:intergenic 45.0%
TCGCAGAACAAGGATGTACA+CGG + chr2_2:57688775-57688794 None:intergenic 45.0%
TGCTTACTACAGGCGTCAAA+TGG - chr2_2:57688893-57688912 Msa0260160:intron 45.0%
!! GCAAGTGATAGCTTTGAAGC+GGG - chr2_2:57689346-57689365 Msa0260160:intron 45.0%
!! GATAGCTTTGAAGCGGGAAA+TGG - chr2_2:57689352-57689371 Msa0260160:intron 45.0%
TTGAAGCGGGAAATGGAAAG+TGG - chr2_2:57689359-57689378 Msa0260160:intron 45.0%
TGAAAGAGCAAGCACAACTC+AGG - chr2_2:57689499-57689518 Msa0260160:intron 45.0%
GAAAGAGCAAGCACAACTCA+GGG - chr2_2:57689500-57689519 Msa0260160:intron 45.0%
ATGGCTTACCAGTACAAGCT+TGG - chr2_2:57689528-57689547 Msa0260160:intron 45.0%
CAAAGTTGCCAAGCTTGTAC+TGG + chr2_2:57689539-57689558 None:intergenic 45.0%
GTACAAGCTTGGCAACTTTG+AGG - chr2_2:57689539-57689558 Msa0260160:intron 45.0%
!! CTGTAGAAAAGGCGTCAATG+TGG + chr2_2:57689855-57689874 None:intergenic 45.0%
GATATATGGCCTGGACAGTT+TGG + chr2_2:57689958-57689977 None:intergenic 45.0%
CAGTCCAAGTAAGATGCACA+AGG + chr2_2:57689995-57690014 None:intergenic 45.0%
! CGTTAACGGTAATGGTGCTC+CGG - chr2_2:57685229-57685248 Msa0260160:three_prime_UTR 50.0%
ACCAGCTCAGAGAAAGACGA+CGG - chr2_2:57685263-57685282 Msa0260160:three_prime_UTR 50.0%
ACGGCGTCGTTTATCGGAAT+CGG + chr2_2:57685402-57685421 None:intergenic 50.0%
ATTCCGATAAACGACGCCGT+AGG - chr2_2:57685402-57685421 Msa0260160:three_prime_UTR 50.0%
CTTCCTACGGCGTCGTTTAT+CGG + chr2_2:57685408-57685427 None:intergenic 50.0%
ATCGGATTCGGATTCCGGTT+CGG - chr2_2:57685463-57685482 Msa0260160:three_prime_UTR 50.0%
!! TTCGGATTCCGGTTCGGATT+CGG - chr2_2:57685469-57685488 Msa0260160:three_prime_UTR 50.0%
CAGAGTGCGATGAATCCGAA+CGG - chr2_2:57685495-57685514 Msa0260160:three_prime_UTR 50.0%
TGAATCCGAACGGTCTGGTT+CGG - chr2_2:57685505-57685524 Msa0260160:three_prime_UTR 50.0%
! TGGTTCGGAGTCGGAGTATT+CGG - chr2_2:57685520-57685539 Msa0260160:three_prime_UTR 50.0%
! TATTCGGGTTCGGAGAGTGA+GGG - chr2_2:57685536-57685555 Msa0260160:three_prime_UTR 50.0%
GAGAGAGGAAGGAGAGGAAA+AGG - chr2_2:57685558-57685577 Msa0260160:three_prime_UTR 50.0%
GAGGAAGGAGAGGAAAAGGA+AGG - chr2_2:57685562-57685581 Msa0260160:three_prime_UTR 50.0%
AGAAACGAAGGAGGAGAGAG+AGG - chr2_2:57685585-57685604 Msa0260160:three_prime_UTR 50.0%
GAAACGAAGGAGGAGAGAGA+GGG - chr2_2:57685586-57685605 Msa0260160:three_prime_UTR 50.0%
AGAGGGAGGAAGAGAAGAGA+AGG - chr2_2:57685603-57685622 Msa0260160:three_prime_UTR 50.0%
CCGTCAATCTAAGTCCACTC+CGG + chr2_2:57686093-57686112 None:intergenic 50.0%
! CCGGAGTGGACTTAGATTGA+CGG - chr2_2:57686090-57686109 Msa0260160:intron 50.0%
TAGATTGACGGCCTGAGAGA+CGG - chr2_2:57686102-57686121 Msa0260160:intron 50.0%
! GGTCGAGAGTGTAAGGTTGT+AGG - chr2_2:57686203-57686222 Msa0260160:intron 50.0%
AGTCCAGCCCACCAATGAAA+CGG + chr2_2:57686436-57686455 None:intergenic 50.0%
!! TTTCATTGGTGGGCTGGACT+TGG - chr2_2:57686436-57686455 Msa0260160:CDS 50.0%
! AGCTAAAGACCTACGGGCTA+CGG - chr2_2:57687171-57687190 Msa0260160:intron 50.0%
!! TGTTATAGCGGGTCTAGGGA+AGG - chr2_2:57687253-57687272 Msa0260160:intron 50.0%
!! GTTATAGCGGGTCTAGGGAA+GGG - chr2_2:57687254-57687273 Msa0260160:intron 50.0%
AGTCTTGACGCAACAGTTGG+AGG + chr2_2:57687372-57687391 None:intergenic 50.0%
GGAAGTCTTGACGCAACAGT+TGG + chr2_2:57687375-57687394 None:intergenic 50.0%
ACTAGGAAACAGCCTCCAAC+TGG - chr2_2:57687636-57687655 Msa0260160:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr2_2:57687665-57687684 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG - chr2_2:57687687-57687706 Msa0260160:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG - chr2_2:57687688-57687707 Msa0260160:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG + chr2_2:57687699-57687718 None:intergenic 50.0%
TATAACATCCTGGGACTGGG+AGG - chr2_2:57688055-57688074 Msa0260160:intron 50.0%
CATCTCATCGTCGCAGAACA+AGG + chr2_2:57688785-57688804 None:intergenic 50.0%
TCAATGACGAAGAACAGCGC+AGG - chr2_2:57688970-57688989 Msa0260160:intron 50.0%
GCGGGAAATGGAAAGTGGAA+TGG - chr2_2:57689364-57689383 Msa0260160:intron 50.0%
ATTGCAGCAGCAGCCTATAG+TGG + chr2_2:57689642-57689661 None:intergenic 50.0%
TGCTGCAATCCAGAGAAGGT+TGG - chr2_2:57689653-57689672 Msa0260160:CDS 50.0%
TTTGGAGATGCTCGCTCACT+TGG + chr2_2:57689940-57689959 None:intergenic 50.0%
! GCACAAGGCTGCCTTTTCAT+AGG + chr2_2:57689980-57689999 None:intergenic 50.0%
! GCAGCCTTGTGCATCTTACT+TGG - chr2_2:57689988-57690007 Msa0260160:CDS 50.0%
GTCGTCTTTCTCTGAGCTGG+TGG + chr2_2:57685264-57685283 None:intergenic 55.0%
CTCTGACTCCGAATCCGAAC+CGG + chr2_2:57685480-57685499 None:intergenic 55.0%
TGCGATGAATCCGAACGGTC+TGG - chr2_2:57685500-57685519 Msa0260160:three_prime_UTR 55.0%
! GGTTCGGAGTCGGAGTATTC+GGG - chr2_2:57685521-57685540 Msa0260160:three_prime_UTR 55.0%
! GGAGTCGGAGTATTCGGGTT+CGG - chr2_2:57685526-57685545 Msa0260160:three_prime_UTR 55.0%
! GTATTCGGGTTCGGAGAGTG+AGG - chr2_2:57685535-57685554 Msa0260160:three_prime_UTR 55.0%
GGGAGGAAGAGAAGAGAAGG+AGG - chr2_2:57685606-57685625 Msa0260160:three_prime_UTR 55.0%
GACGGTTGAGTGGCTGAGTA+TGG - chr2_2:57686120-57686139 Msa0260160:intron 55.0%
TACACCACCACCTCTGTGGA+GGG + chr2_2:57686150-57686169 None:intergenic 55.0%
CAAGTACACCACCACCTCTG+TGG + chr2_2:57686154-57686173 None:intergenic 55.0%
CACGGTCCTGATTGAGTCTC+TGG - chr2_2:57686354-57686373 Msa0260160:intron 55.0%
GCGAGTCCAGAGACTCAATC+AGG + chr2_2:57686363-57686382 None:intergenic 55.0%
ATTGAGTCTCTGGACTCGCC+TGG - chr2_2:57686364-57686383 Msa0260160:intron 55.0%
TTGAGTCTCTGGACTCGCCT+GGG - chr2_2:57686365-57686384 Msa0260160:intron 55.0%
! GATCCGTTTCATTGGTGGGC+TGG - chr2_2:57686430-57686449 Msa0260160:CDS 55.0%
TTTCAGTTGCCGTAGCCCGT+AGG + chr2_2:57687183-57687202 None:intergenic 55.0%
TGACGCAACAGTTGGAGGCT+TGG + chr2_2:57687367-57687386 None:intergenic 55.0%
CAGCCTCCAACTGGTAACCT+TGG - chr2_2:57687645-57687664 Msa0260160:intron 55.0%
GTTGCGCCAAGGTTACCAGT+TGG + chr2_2:57687654-57687673 None:intergenic 55.0%
ACTGGTAACCTTGGCGCAAC+TGG - chr2_2:57687654-57687673 Msa0260160:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr2_2:57687700-57687719 Msa0260160:intron 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr2_2:57687796-57687815 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr2_2:57687797-57687816 None:intergenic 55.0%
TCCAGAGTTCACCGCATGGT+TGG - chr2_2:57687900-57687919 Msa0260160:intron 55.0%
GAAAACATCCTCCCAGTCCC+AGG + chr2_2:57688066-57688085 None:intergenic 55.0%
AGAGCAAGCACAACTCAGGG+AGG - chr2_2:57689503-57689522 Msa0260160:intron 55.0%
AGCACAACTCAGGGAGGAGA+TGG - chr2_2:57689509-57689528 Msa0260160:intron 55.0%
CTGCTGCTGCAATCCAGAGA+AGG - chr2_2:57689649-57689668 Msa0260160:CDS 55.0%
CATCAGGGTCCAACCTTCTC+TGG + chr2_2:57689665-57689684 None:intergenic 55.0%
CTGTCTACACGGCAGCATCA+GGG + chr2_2:57689680-57689699 None:intergenic 55.0%
ACTGTCTACACGGCAGCATC+AGG + chr2_2:57689681-57689700 None:intergenic 55.0%
TGCTGCCGTGTAGACAGTGT+AGG - chr2_2:57689683-57689702 Msa0260160:CDS 55.0%
CGAGCATCTCCAAACTGTCC+AGG - chr2_2:57689946-57689965 Msa0260160:CDS 55.0%
!! GAGCTGGTGGCGATTTTCGC+CGG + chr2_2:57685251-57685270 None:intergenic 60.0%
GCCGTCGTCTTTCTCTGAGC+TGG + chr2_2:57685267-57685286 None:intergenic 60.0%
CGACTCCGAACCAGACCGTT+CGG + chr2_2:57685513-57685532 None:intergenic 60.0%
!! CGAACGGTCTGGTTCGGAGT+CGG - chr2_2:57685511-57685530 Msa0260160:three_prime_UTR 60.0%
GTTCGGAGAGTGAGGGAGAG+AGG - chr2_2:57685543-57685562 Msa0260160:three_prime_UTR 60.0%
GGAGAGTGAGGGAGAGAGGA+AGG - chr2_2:57685547-57685566 Msa0260160:three_prime_UTR 60.0%
GTGAGGGAGAGAGGAAGGAG+AGG - chr2_2:57685552-57685571 Msa0260160:three_prime_UTR 60.0%
ACGAAGGAGGAGAGAGAGGG+AGG - chr2_2:57685589-57685608 Msa0260160:three_prime_UTR 60.0%
CAGCCACTCAACCGTCTCTC+AGG + chr2_2:57686116-57686135 None:intergenic 60.0%
GTATGGCATCCCCTCCACAG+AGG - chr2_2:57686137-57686156 Msa0260160:intron 60.0%
ACACCACCACCTCTGTGGAG+GGG + chr2_2:57686149-57686168 None:intergenic 60.0%
GTACACCACCACCTCTGTGG+AGG + chr2_2:57686151-57686170 None:intergenic 60.0%
CTCGCCTGGGTGTGCTTCTA+TGG - chr2_2:57686378-57686397 Msa0260160:intron 60.0%
! GACGCCATAGAAGCACACCC+AGG + chr2_2:57686385-57686404 None:intergenic 60.0%
! TAGCGGGTCTAGGGAAGGGT+AGG - chr2_2:57687258-57687277 Msa0260160:intron 60.0%
GCGCCAAGGTTACCAGTTGG+AGG + chr2_2:57687651-57687670 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr2_2:57687769-57687788 Msa0260160:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr2_2:57687784-57687803 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr2_2:57687785-57687804 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr2_2:57687784-57687803 Msa0260160:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr2_2:57687785-57687804 Msa0260160:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr2_2:57687801-57687820 Msa0260160:intron 60.0%
TGCGGTGAACTCTGGACGCT+TGG + chr2_2:57687896-57687915 None:intergenic 60.0%
AGCGTCCAGAGTTCACCGCA+TGG - chr2_2:57687896-57687915 Msa0260160:intron 60.0%
GCCAACCATGCGGTGAACTC+TGG + chr2_2:57687904-57687923 None:intergenic 60.0%
CGGCCTGAGAGACGGTTGAG+TGG - chr2_2:57686110-57686129 Msa0260160:intron 65.0%
TGGCATCCCCTCCACAGAGG+TGG - chr2_2:57686140-57686159 Msa0260160:intron 65.0%
CATCCCCTCCACAGAGGTGG+TGG - chr2_2:57686143-57686162 Msa0260160:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr2_2:57687771-57687790 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr2_2:57687786-57687805 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr2_2:57687790-57687809 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr2_2:57687791-57687810 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr2_2:57687802-57687821 Msa0260160:intron 65.0%
GGGCTGGACTTGGCCCAGTC+TGG - chr2_2:57686446-57686465 Msa0260160:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 57685202 57690192 57685202 ID=Msa0260160;Name=Msa0260160
chr2_2 mRNA 57685202 57690192 57685202 ID=Msa0260160-mRNA-1;Parent=Msa0260160;Name=Msa0260160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=16|0.71|0.87|0.87|1|1|8|497|339
chr2_2 exon 57685202 57685746 57685202 ID=Msa0260160-mRNA-1:exon:17586;Parent=Msa0260160-mRNA-1
chr2_2 exon 57685834 57685905 57685834 ID=Msa0260160-mRNA-1:exon:17585;Parent=Msa0260160-mRNA-1
chr2_2 exon 57686009 57686087 57686009 ID=Msa0260160-mRNA-1:exon:17584;Parent=Msa0260160-mRNA-1
chr2_2 exon 57686403 57686516 57686403 ID=Msa0260160-mRNA-1:exon:17583;Parent=Msa0260160-mRNA-1
chr2_2 exon 57686688 57686729 57686688 ID=Msa0260160-mRNA-1:exon:17582;Parent=Msa0260160-mRNA-1
chr2_2 exon 57687023 57687072 57687023 ID=Msa0260160-mRNA-1:exon:17581;Parent=Msa0260160-mRNA-1
chr2_2 exon 57688246 57688288 57688246 ID=Msa0260160-mRNA-1:exon:17580;Parent=Msa0260160-mRNA-1
chr2_2 exon 57689605 57690192 57689605 ID=Msa0260160-mRNA-1:exon:17579;Parent=Msa0260160-mRNA-1
chr2_2 five_prime_UTR 57690177 57690192 57690177 ID=Msa0260160-mRNA-1:five_prime_utr;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57689605 57690176 57689605 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57688246 57688288 57688246 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57687023 57687072 57687023 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57686688 57686729 57686688 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57686403 57686516 57686403 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57686009 57686087 57686009 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57685834 57685905 57685834 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 CDS 57685699 57685746 57685699 ID=Msa0260160-mRNA-1:cds;Parent=Msa0260160-mRNA-1
chr2_2 three_prime_UTR 57685202 57685698 57685202 ID=Msa0260160-mRNA-1:three_prime_utr;Parent=Msa0260160-mRNA-1
Gene Sequence

>Msa0260160

ATGTCGAGAAACGTTAACGGTAATGGTGCTCCGGCGAAAATCGCCACCAGCTCAGAGAAAGACGACGGCGACGCTCCGTCGAAAAGAGATTCAAGGAAAACACGAGAATATTCCGATATAGACACACAAACCGATAGAAAGCATAGTAGCTCAAAGAAGAAATCGCGTGAGAGTTCAGATTCCGATTCCGATAAACGACGCCGTAGGAAGAGAAAATCACGTCGGAGATACAGCAGTGATGATGAATCGGATTCGGATTCCGGTTCGGATTCGGAGTCAGAGTGCGATGAATCCGAACGGTCTGGTTCGGAGTCGGAGTATTCGGGTTCGGAGAGTGAGGGAGAGAGGAAGGAGAGGAAAAGGAAGGAGAAACGAAGGAGGAGAGAGAGGGAGGAAGAGAAGAGAAGGAGGAAAGAGAAAGAGAAGAAGAGAAGGAAGAAGGAGAAAGAGGAAGAGAGAAGGAAGAAAGAGAAACGGAAAATGAAGAAGAAGGAGAAAAAGGAGAGAGGGAAGAAAGGTGCTGTGACTAATTTATGGGGAAAGTATGGGATTATTAGAGAAACTGATATGTGTCGTTATCCAGTGACTTACAGTTTAGCAAAATTTTATATCGAGGTAAATATGGAGCATCTGTCTAATTGGGAAGAAAAACAGATGTTCAAAGAATTTATGGAGGATCACAACACAGCTACGTTCCCTTCCAAAAAGTATTACAGTCTTGATGCTTACTACAGGCGTCAAATGGAAAAAGAGATGAAAAAGGGTTATAAGAAGGTTCAGCCTAAGGAACGAACAGTTTTCAATGACGAAGAACAGCGCAGACAAGAAATGTTGCAAGTACGTGAAAAACAGAAGGAAGAGCAAGTGATAGCTTTGAAGCGGGAAATGGAAAGTGGAATGGCACAAGCAATGAAAGAGCAAGCACAACTCAGGGAGGAGATGGCTTACCAGTACAAGCTTGGCAACTTTGAGGCTGCTGCTGCAATCCAGAGAAGGTTGGACCCTGATGCTGCCGTGTAG
Protein sequence

>Msa0260160

MSRNVNGNGAPAKIATSSEKDDGDAPSKRDSRKTREYSDIDTQTDRKHSSSKKKSRESSDSDSDKRRRRKRKSRRRYSSDDESDSDSGSDSESECDESERSGSESEYSGSESEGERKERKRKEKRRRREREEEKRRRKEKEKKRRKKEKEEERRKKEKRKMKKKEKKERGKKGAVTNLWGKYGIIRETDMCRYPVTYSLAKFYIEVNMEHLSNWEEKQMFKEFMEDHNTATFPSKKYYSLDAYYRRQMEKEMKKGYKKVQPKERTVFNDEEQRRQEMLQVREKQKEEQVIALKREMESGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDAAV*