AlfalfaGEDB | Msa0260860

M. sativa cultivar zhongmu-4 / Msa0260860

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010769 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042221 GO:0042995 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045595 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048638 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051510 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0060284 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0080092 GO:0090406 GO:0097159 GO:0120025 GO:0140110 GO:1900618 GO:1901363 GO:1901371 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905421 GO:1905957 GO:1905959 GO:1990019 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260860	QSD99600.1	85.892	482	58	3	1	473	1	481	0.0	768

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260860	sp\|O80883\|MB101_ARATH	84.252	127	20	0	34	160	17	143	7.20e-72	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260860	A0A896WBX0	85.892	482	58	3	1	473	1	481	0.0	768

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TFs/TRs:

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Gene ID	Type	Classification
Msa0260860	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047950	Msa0260860	0.952936	8.237441e-111	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260860	MtrunA17_Chr2g0322521	86.284	401	31	5	1	394	1	384	0.0	598
Msa0260860	MtrunA17_Chr8g0354661	64.103	156	52	2	1	155	5	157	4.81e-64	216
Msa0260860	MtrunA17_Chr3g0080861	71.654	127	36	0	29	155	31	157	3.11e-63	213
Msa0260860	MtrunA17_Chr3g0099131	81.250	112	21	0	35	146	41	152	4.01e-62	211
Msa0260860	MtrunA17_Chr1g0154031	68.033	122	39	0	35	156	76	197	2.71e-56	192
Msa0260860	MtrunA17_Chr1g0192411	64.103	117	42	0	35	151	12	128	2.50e-49	174
Msa0260860	MtrunA17_Chr1g0203411	57.031	128	55	0	34	161	11	138	1.39e-48	168
Msa0260860	MtrunA17_Chr5g0395281	63.208	106	39	0	33	138	10	115	1.76e-46	163
Msa0260860	MtrunA17_Chr2g0323411	61.062	113	43	1	32	143	9	121	2.06e-46	164
Msa0260860	MtrunA17_Chr1g0167661	62.617	107	40	0	32	138	9	115	2.97e-46	161

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0260860	AT2G32460.2	84.252	127	20	34	160	5	131	6.76e-73	238
Msa0260860	AT2G32460.1	84.252	127	20	34	160	17	143	7.32e-73	238
Msa0260860	AT5G06100.1	77.049	122	28	34	155	31	152	1.17e-67	224
Msa0260860	AT5G06100.5	75.200	125	31	34	158	31	155	9.99e-67	223
Msa0260860	AT5G06100.2	75.200	125	31	34	158	31	155	9.99e-67	223
Msa0260860	AT5G06100.3	75.200	125	31	34	158	31	155	9.99e-67	223
Msa0260860	AT5G06100.4	75.200	125	31	34	158	31	155	9.99e-67	223
Msa0260860	AT3G11440.2	72.093	129	36	32	160	38	166	9.31e-66	219
Msa0260860	AT3G11440.3	72.093	129	36	32	160	38	166	7.80e-65	219
Msa0260860	AT3G11440.4	72.093	129	36	32	160	38	166	7.80e-65	219

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Find 88 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTTGATGATGAAGA+TGG	0.472018	2_2:+58761125	None:intergenic
AAAGAGGTAAGCCGGCTCTC+TGG	0.465512	2_2:+58761438	None:intergenic
AACAGGGAAGAAACCAGTCC+AGG	0.517670	2_2:-58759799	Msa0260860:intron
AAGTATTTCTTGCAATGATA+AGG	0.422893	2_2:-58760853	Msa0260860:CDS
AATTCAGGGTTGTTAAGGTG+TGG	0.555944	2_2:-58762512	Msa0260860:CDS
AATTCTGTTCAGAAGAATTC+AGG	0.273502	2_2:-58762527	Msa0260860:CDS
AATTTGAGCTATGATCATCA+TGG	0.543232	2_2:-58761050	Msa0260860:CDS
ACAGAGTACGTGAATAAGCA+TGG	0.627357	2_2:-58762563	Msa0260860:CDS
ACAGATGAAGCTTCTTCATC+AGG	0.458538	2_2:-58759642	Msa0260860:CDS
ACGTGAATAAGCATGGTGAA+GGG	0.654969	2_2:-58762556	Msa0260860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATATCATGTCTTCATGT+GGG	+	chr2_2:58759697-58759716	None:intergenic	30.0%
AATTCTGTTCAGAAGAATTC+AGG	-	chr2_2:58759752-58759771	Msa0260860:CDS	30.0%
ATTCTGTTCAGAAGAATTCA+GGG	-	chr2_2:58759753-58759772	Msa0260860:CDS	30.0%
AAACTCAATTGATGCTGAAA+AGG	+	chr2_2:58760382-58760401	None:intergenic	30.0%
GTGGAGGATTATAATCATAA+TGG	+	chr2_2:58761009-58761028	None:intergenic	30.0%
GAAAAATTGAATTGTGGACA+TGG	+	chr2_2:58761067-58761086	None:intergenic	30.0%
AATTTGAGCTATGATCATCA+TGG	-	chr2_2:58761229-58761248	Msa0260860:CDS	30.0%
AGTGAGGATTCAACATATAA+GGG	-	chr2_2:58761454-58761473	Msa0260860:CDS	30.0%
TTATTAATTAGTCGAACCAG+TGG	-	chr2_2:58761858-58761877	Msa0260860:intron	30.0%
TCATCATGCGTAAGTAATTA+TGG	+	chr2_2:58761967-58761986	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	58759572	58762729	58759572	ID=Msa0260860;Name=Msa0260860
chr2_2	mRNA	58759572	58762729	58759572	ID=Msa0260860-mRNA-1;Parent=Msa0260860;Name=Msa0260860-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0\|0\|0\|1\|1\|1\|3\|0\|473
chr2_2	exon	58762376	58762729	58762376	ID=Msa0260860-mRNA-1:exon:18098;Parent=Msa0260860-mRNA-1
chr2_2	exon	58760697	58761519	58760697	ID=Msa0260860-mRNA-1:exon:18097;Parent=Msa0260860-mRNA-1
chr2_2	exon	58759572	58759816	58759572	ID=Msa0260860-mRNA-1:exon:18096;Parent=Msa0260860-mRNA-1
chr2_2	CDS	58762376	58762729	58762376	ID=Msa0260860-mRNA-1:cds;Parent=Msa0260860-mRNA-1
chr2_2	CDS	58760697	58761519	58760697	ID=Msa0260860-mRNA-1:cds;Parent=Msa0260860-mRNA-1
chr2_2	CDS	58759572	58759816	58759572	ID=Msa0260860-mRNA-1:cds;Parent=Msa0260860-mRNA-1

Gene Sequence

>Msa0260860

ATGGCGAAAACGATCTCGAACATCAAAATCAACGACAACAACAATAATAATGTTGAGGTTGACATTGACTCGTCAAAAGATGATGTTGATGCTAGAACTGGCATGAAGAAGGGACCGTGGACCCCACATGAAGACATGATATTGACAGAGTACGTGAATAAGCATGGTGAAGGGAATTGGAATTCTGTTCAGAAGAATTCAGGGTTGTTAAGGTGTGGAAAAAGCTGCAGACTTAGATGGGCGAATCATTTGAGGCCGAATCTTAAAAAGGGTTCATTTTCTGAAGAGGAAGAAAAAATCATCATTGAACTTCATGCTAAGCTTGGAAACAAATGGGCTCGAATGGCTACTCAGTTGCCCGGAAGAACGGATAACGAAATCAAAAACTTTTGGAACACGAGAATGAAAAGGCGCCAGAGAGCCGGCTTACCTCTTTATCCTCCAGAAATCCAAGCAGAAGCTATTGTATACAATGATAAACCTCTATTGCAACTACAACATGAACCTTTATCTTCTTCATCATTATCATTTTCTTTACTCTTATCTTCTTGTTACCCTAAGAAGCTTGATGATCCAAACCATTATGATTATAATCCTCCACAAAACAACTCTGATTCTTCTAATCACTACACCAATCCATGTCCACAATTCAATTTTTCCAATGAAGAAAACATTGAGATTAATGAAACTCTTGCTTTGCAAAAATCACCTTCACTTTCACCTTATCCATCTTCATCATCAAATATTTTCAACCAAAATTTTACTCCTCCAAGTGATTCACATGATTACCAATATTCTGAAAATTTGAGCTATGATCATCATGGATTCAATGCAGGATCTCTGTATGATTCTGAGACTCCTGCTTCATCTTATGCTAGTGGTGTTGATGGTAATTTTATGGGAAATTCTAGCATGGTTAATGATTACTATGAAGTTGCACCATTGTCCCATGAAGGAAAAAATAGTGGACTTTTGGATGATCTTGTGATGGAAGGTAGAAGTATTTCTTGCAATGATAAGGCTAAGAGTGAGGATTCAACATATAAGGGGAGTGTATCTCATAAGAGGAAAAGCATGGAGGTTGAAGAATATGCAGAGGAAGAAAGTTTTTCCATGAAGAAGAAGAATATTGATGCGATTCAGAAGAAAGATTTCAGCACTTCTGACTTGTCAACAGGGAAGAAACCAGTCCAGGAGGATGAGGTAGAAGAGCTGAATACAATGTACGATGATGATTTGGATTGCTTGCTCAACAATTTTCCCTCAGAAATACCAATGCCTGAATGGTATTGTAGAGGAAAAAGTCAGTCATTGGGAACTGAAACTCCAACAGATGAAGCTTCTTCATCAGGTGGTCCCACCAATCAAGAATTTGCTTGGACTCTTGGATCAAATTGGAACAACATGCCTGGCATATGTTAA

Protein sequence

>Msa0260860

MAKTISNIKINDNNNNNVEVDIDSSKDDVDARTGMKKGPWTPHEDMILTEYVNKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGSFSEEEEKIIIELHAKLGNKWARMATQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEIQAEAIVYNDKPLLQLQHEPLSSSSLSFSLLLSSCYPKKLDDPNHYDYNPPQNNSDSSNHYTNPCPQFNFSNEENIEINETLALQKSPSLSPYPSSSSNIFNQNFTPPSDSHDYQYSENLSYDHHGFNAGSLYDSETPASSYASGVDGNFMGNSSMVNDYYEVAPLSHEGKNSGLLDDLVMEGRSISCNDKAKSEDSTYKGSVSHKRKSMEVEEYAEEESFSMKKKNIDAIQKKDFSTSDLSTGKKPVQEDEVEELNTMYDDDLDCLLNNFPSEIPMPEWYCRGKSQSLGTETPTDEASSSGGPTNQEFAWTLGSNWNNMPGIC*