Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262180 | XP_013465109.1 | 85.714 | 217 | 24 | 3 | 1 | 210 | 1 | 217 | 2.55e-125 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262180 | sp|F4JIJ7|BH162_ARATH | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 1.15e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262180 | A0A072VAT4 | 85.714 | 217 | 24 | 3 | 1 | 210 | 1 | 217 | 1.22e-125 | 363 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0262180 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0262180 | Msa0337400 | 0.809566 | 1.776037e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262180 | MtrunA17_Chr2g0324511 | 81.595 | 163 | 20 | 2 | 1 | 153 | 1 | 163 | 1.64e-88 | 258 |
| Msa0262180 | MtrunA17_Chr4g0040201 | 66.495 | 194 | 57 | 4 | 9 | 194 | 8 | 201 | 1.60e-83 | 246 |
| Msa0262180 | MtrunA17_Chr2g0324521 | 86.957 | 115 | 9 | 2 | 45 | 153 | 2 | 116 | 3.03e-63 | 192 |
| Msa0262180 | MtrunA17_Chr2g0324571 | 80.342 | 117 | 15 | 1 | 45 | 153 | 2 | 118 | 4.19e-62 | 189 |
| Msa0262180 | MtrunA17_Chr2g0324531 | 86.441 | 59 | 8 | 0 | 152 | 210 | 2 | 60 | 2.11e-31 | 109 |
| Msa0262180 | MtrunA17_Chr2g0282341 | 39.552 | 134 | 69 | 3 | 48 | 173 | 4 | 133 | 4.18e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0262180 | AT4G20970.1 | 40.884 | 181 | 87 | 6 | 12 | 175 | 11 | 188 | 1.17e-33 | 119 |
| Msa0262180 | AT1G10585.1 | 28.902 | 173 | 117 | 3 | 7 | 177 | 9 | 177 | 1.82e-14 | 68.9 |
| Msa0262180 | AT5G51780.1 | 29.586 | 169 | 105 | 3 | 14 | 169 | 3 | 170 | 3.99e-12 | 62.8 |
| Msa0262180 | AT5G51780.2 | 29.586 | 169 | 105 | 3 | 14 | 169 | 26 | 193 | 6.11e-12 | 62.4 |
| Msa0262180 | AT1G10586.1 | 25.882 | 170 | 120 | 3 | 7 | 174 | 9 | 174 | 4.88e-11 | 59.7 |
Find 49 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAATTCCAATCAATTTA+AGG | 0.084886 | 2_2:-60953624 | Msa0262180:five_prime_UTR |
| CCACAAACTTTGTTACAATT+TGG | 0.173105 | 2_2:-60951621 | Msa0262180:CDS |
| ATATATATGCTTCTTAATTA+AGG | 0.193470 | 2_2:+60951453 | None:intergenic |
| TATCTCTTCAAATTCTTCTT+TGG | 0.234992 | 2_2:-60952561 | Msa0262180:CDS |
| CAATTGTGGGATCTTGAAAT+TGG | 0.247122 | 2_2:-60951528 | Msa0262180:CDS |
| ATGCTTCTTAATTAAGGATT+TGG | 0.262973 | 2_2:+60951459 | None:intergenic |
| AACAAGAAAGAAAGTTTAAA+AGG | 0.273993 | 2_2:-60952716 | Msa0262180:CDS |
| AGAGAAGAAAGAAAGTTTAA+TGG | 0.275748 | 2_2:-60952741 | Msa0262180:CDS |
| ATAAATTACCTTAAATTGAT+TGG | 0.291543 | 2_2:+60953616 | None:intergenic |
| GAGAGTTAAGTTTGGAATAG+AGG | 0.305206 | 2_2:+60953478 | None:intergenic |
| TATAGAATTGTGATTAGAAT+TGG | 0.327656 | 2_2:+60953643 | None:intergenic |
| GAGAAGAAAGAAAGTTTAAT+GGG | 0.355968 | 2_2:-60952740 | Msa0262180:CDS |
| CCAACTTTAGATTTGTCTCT+AGG | 0.356186 | 2_2:+60952768 | None:intergenic |
| AGGAAGAAGAGAGTTAAGTT+TGG | 0.360183 | 2_2:+60953470 | None:intergenic |
| TATAATATTTAGTAGATAGT+TGG | 0.384084 | 2_2:+60953684 | None:intergenic |
| CCAAATTGTAACAAAGTTTG+TGG | 0.389197 | 2_2:+60951621 | None:intergenic |
| AACATCCTTTCTTTCGACTT+TGG | 0.397896 | 2_2:+60953530 | None:intergenic |
| TCTTCAAATTCTTCTTTGGC+TGG | 0.403407 | 2_2:-60952557 | Msa0262180:CDS |
| TTGAAATTGGAAGTGAGAGT+TGG | 0.404544 | 2_2:-60951515 | Msa0262180:CDS |
| TAATTTCACAGAAAATAAAA+TGG | 0.425918 | 2_2:+60952615 | None:intergenic |
| ATAGCCTCATCTACTTGATC+AGG | 0.429867 | 2_2:+60952806 | None:intergenic |
| CTTTCGACTTTGGTTGAACA+AGG | 0.449950 | 2_2:+60953540 | None:intergenic |
| AAAATAGAGATTCATGAAAT+GGG | 0.456591 | 2_2:-60952677 | Msa0262180:CDS |
| TGAAATTGGAAGTGAGAGTT+GGG | 0.469657 | 2_2:-60951514 | Msa0262180:CDS |
| ATTTATCGTAAGAAAATTCA+AGG | 0.469771 | 2_2:-60953599 | Msa0262180:five_prime_UTR |
| TTGTGATTAGAATTGGTTAA+CGG | 0.475782 | 2_2:+60953650 | None:intergenic |
| TCTTGTTGATTATGTTCCAT+TGG | 0.483862 | 2_2:+60953570 | None:intergenic |
| TTCAACCAAAGTCGAAAGAA+AGG | 0.492351 | 2_2:-60953535 | Msa0262180:CDS |
| AAATTCAAGGTTGCTTCCAA+TGG | 0.496988 | 2_2:-60953586 | Msa0262180:exon |
| CCTAGAGACAAATCTAAAGT+TGG | 0.498284 | 2_2:-60952768 | Msa0262180:CDS |
| ATTTCAAGATCCCACAATTG+AGG | 0.509351 | 2_2:+60951531 | None:intergenic |
| TTAAGGATTTGGTAAACTCA+TGG | 0.514490 | 2_2:+60951470 | None:intergenic |
| TCTTCATACCGTACATGCTC+AGG | 0.517547 | 2_2:-60952525 | Msa0262180:intron |
| TCATCTACTTGATCAGGTAA+TGG | 0.522136 | 2_2:+60952812 | None:intergenic |
| TATATATACCTGAGCATGTA+CGG | 0.538419 | 2_2:+60952517 | None:intergenic |
| TACAAGTGATTGTAACATGT+GGG | 0.544345 | 2_2:-60952646 | Msa0262180:CDS |
| GGAAACACAGCCTCAATTGT+GGG | 0.559018 | 2_2:-60951541 | Msa0262180:CDS |
| TGGAAACACAGCCTCAATTG+TGG | 0.568137 | 2_2:-60951542 | Msa0262180:CDS |
| ATGACCTTCGAATTATAGCT+AGG | 0.581881 | 2_2:+60953450 | None:intergenic |
| TCTTCCTAGCTATAATTCGA+AGG | 0.587922 | 2_2:-60953454 | Msa0262180:intron |
| GAGCAATCAAAATAAGTGAG+AGG | 0.593941 | 2_2:-60951599 | Msa0262180:CDS |
| TGTTACAATCACTTGTAGAG+TGG | 0.604182 | 2_2:+60952652 | None:intergenic |
| GTTACAATCACTTGTAGAGT+GGG | 0.605139 | 2_2:+60952653 | None:intergenic |
| CTACAAGTGATTGTAACATG+TGG | 0.615945 | 2_2:-60952647 | Msa0262180:CDS |
| AGGTTGAAAGAGTTTGTGAA+CGG | 0.618184 | 2_2:-60951579 | Msa0262180:CDS |
| ATTACCTGATCAAGTAGATG+AGG | 0.636526 | 2_2:-60952810 | Msa0262180:CDS |
| GAACGGATCTGTGAGCGATG+TGG | 0.701045 | 2_2:-60951562 | Msa0262180:CDS |
| ACAAGTGATTGTAACATGTG+GGG | 0.739715 | 2_2:-60952645 | Msa0262180:CDS |
| ACTGCATGAAGAGAACGTCG+AGG | 0.768331 | 2_2:-60952585 | Msa0262180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGTAATAAGTTT+TGG | + | chr2_2:60953252-60953271 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGTAATAAGTTT+TGG | + | chr2_2:60953252-60953271 | None:intergenic | 10.0% |
| !! | TATAATATTTAGTAGATAGT+TGG | + | chr2_2:60951457-60951476 | None:intergenic | 15.0% |
| !! | TATAAATTCCAATCAATTTA+AGG | - | chr2_2:60951514-60951533 | Msa0262180:CDS | 15.0% |
| !! | ATAAATTACCTTAAATTGAT+TGG | + | chr2_2:60951525-60951544 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTCTAATTTTGG+TGG | + | chr2_2:60951862-60951881 | None:intergenic | 15.0% |
| !! | TTATTAAATAATGCTACATT+AGG | + | chr2_2:60952023-60952042 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+AGG | - | chr2_2:60952099-60952118 | Msa0262180:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr2_2:60952162-60952181 | Msa0262180:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr2_2:60952163-60952182 | Msa0262180:intron | 15.0% |
| !!! | TTAAAATGACTCAATTATTT+TGG | - | chr2_2:60952209-60952228 | Msa0262180:intron | 15.0% |
| !!! | TAAAATGACTCAATTATTTT+GGG | - | chr2_2:60952210-60952229 | Msa0262180:intron | 15.0% |
| !!! | TGTTATTTTTAATTTAATGC+AGG | - | chr2_2:60952292-60952311 | Msa0262180:intron | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_2:60952526-60952545 | None:intergenic | 15.0% |
| !!! | CAGCTTTAATAATAATATAA+GGG | + | chr2_2:60952704-60952723 | None:intergenic | 15.0% |
| !!! | AAAATTTTTTCTTTGACTTT+TGG | + | chr2_2:60953132-60953151 | None:intergenic | 15.0% |
| !! | CAAAAAGTTTGAATATTTAT+AGG | - | chr2_2:60953163-60953182 | Msa0262180:intron | 15.0% |
| !!! | AATTTAGAGCTTATTTTTTA+GGG | + | chr2_2:60953207-60953226 | None:intergenic | 15.0% |
| !!! | TTCTGATTTGATTATTAATT+TGG | - | chr2_2:60953485-60953504 | Msa0262180:CDS | 15.0% |
| !! | ATATATATGCTTCTTAATTA+AGG | + | chr2_2:60953688-60953707 | None:intergenic | 15.0% |
| !! | TATAATATTTAGTAGATAGT+TGG | + | chr2_2:60951457-60951476 | None:intergenic | 15.0% |
| !! | TATAAATTCCAATCAATTTA+AGG | - | chr2_2:60951514-60951533 | Msa0262180:CDS | 15.0% |
| !! | ATAAATTACCTTAAATTGAT+TGG | + | chr2_2:60951525-60951544 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTCTAATTTTGG+TGG | + | chr2_2:60951862-60951881 | None:intergenic | 15.0% |
| !! | TTATTAAATAATGCTACATT+AGG | + | chr2_2:60952023-60952042 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+AGG | - | chr2_2:60952099-60952118 | Msa0262180:intron | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr2_2:60952162-60952181 | Msa0262180:intron | 15.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr2_2:60952163-60952182 | Msa0262180:intron | 15.0% |
| !!! | TTAAAATGACTCAATTATTT+TGG | - | chr2_2:60952209-60952228 | Msa0262180:intron | 15.0% |
| !!! | TAAAATGACTCAATTATTTT+GGG | - | chr2_2:60952210-60952229 | Msa0262180:intron | 15.0% |
| !!! | TGTTATTTTTAATTTAATGC+AGG | - | chr2_2:60952292-60952311 | Msa0262180:intron | 15.0% |
| !! | TAATTTCACAGAAAATAAAA+TGG | + | chr2_2:60952526-60952545 | None:intergenic | 15.0% |
| !!! | CAGCTTTAATAATAATATAA+GGG | + | chr2_2:60952704-60952723 | None:intergenic | 15.0% |
| !!! | AAAATTTTTTCTTTGACTTT+TGG | + | chr2_2:60953132-60953151 | None:intergenic | 15.0% |
| !! | CAAAAAGTTTGAATATTTAT+AGG | - | chr2_2:60953163-60953182 | Msa0262180:intron | 15.0% |
| !!! | AATTTAGAGCTTATTTTTTA+GGG | + | chr2_2:60953207-60953226 | None:intergenic | 15.0% |
| !!! | TTCTGATTTGATTATTAATT+TGG | - | chr2_2:60953485-60953504 | Msa0262180:CDS | 15.0% |
| !! | ATATATATGCTTCTTAATTA+AGG | + | chr2_2:60953688-60953707 | None:intergenic | 15.0% |
| !! | TATAGAATTGTGATTAGAAT+TGG | + | chr2_2:60951498-60951517 | None:intergenic | 20.0% |
| !! | ATTTATCGTAAGAAAATTCA+AGG | - | chr2_2:60951539-60951558 | Msa0262180:CDS | 20.0% |
| !!! | TAACATAGATTATTTTGTGA+AGG | - | chr2_2:60951917-60951936 | Msa0262180:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_2:60952122-60952141 | Msa0262180:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | - | chr2_2:60952231-60952250 | Msa0262180:intron | 20.0% |
| !! | AACAAGAAAGAAAGTTTAAA+AGG | - | chr2_2:60952422-60952441 | Msa0262180:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_2:60952461-60952480 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_2:60952460-60952479 | Msa0262180:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_2:60952461-60952480 | Msa0262180:intron | 20.0% |
| !!! | GCAGCTTTAATAATAATATA+AGG | + | chr2_2:60952705-60952724 | None:intergenic | 20.0% |
| !! | TAAAAAGATAAGGTTGAATA+TGG | + | chr2_2:60952781-60952800 | None:intergenic | 20.0% |
| !! | TTTAACGCTATAAAAAGATA+AGG | + | chr2_2:60952791-60952810 | None:intergenic | 20.0% |
| !!! | TTTTTATAGCGTTAAAAGAT+AGG | - | chr2_2:60952795-60952814 | Msa0262180:CDS | 20.0% |
| !!! | TTTTATAGCGTTAAAAGATA+GGG | - | chr2_2:60952796-60952815 | Msa0262180:CDS | 20.0% |
| !!! | CAATTTAGAGCTTATTTTTT+AGG | + | chr2_2:60953208-60953227 | None:intergenic | 20.0% |
| !!! | TTATTATTCAAATGCACTTT+TGG | + | chr2_2:60953352-60953371 | None:intergenic | 20.0% |
| !! | TATAGAATTGTGATTAGAAT+TGG | + | chr2_2:60951498-60951517 | None:intergenic | 20.0% |
| !! | ATTTATCGTAAGAAAATTCA+AGG | - | chr2_2:60951539-60951558 | Msa0262180:CDS | 20.0% |
| !!! | TAACATAGATTATTTTGTGA+AGG | - | chr2_2:60951917-60951936 | Msa0262180:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_2:60952122-60952141 | Msa0262180:intron | 20.0% |
| !!! | GGACATTTTTTTTTAGAAAA+TGG | - | chr2_2:60952231-60952250 | Msa0262180:intron | 20.0% |
| !! | AACAAGAAAGAAAGTTTAAA+AGG | - | chr2_2:60952422-60952441 | Msa0262180:intron | 20.0% |
| !!! | ATTTCATGAATCTCTATTTT+TGG | + | chr2_2:60952461-60952480 | None:intergenic | 20.0% |
| !! | AAAAATAGAGATTCATGAAA+TGG | - | chr2_2:60952460-60952479 | Msa0262180:intron | 20.0% |
| !! | AAAATAGAGATTCATGAAAT+GGG | - | chr2_2:60952461-60952480 | Msa0262180:intron | 20.0% |
| !!! | GCAGCTTTAATAATAATATA+AGG | + | chr2_2:60952705-60952724 | None:intergenic | 20.0% |
| !! | TAAAAAGATAAGGTTGAATA+TGG | + | chr2_2:60952781-60952800 | None:intergenic | 20.0% |
| !! | TTTAACGCTATAAAAAGATA+AGG | + | chr2_2:60952791-60952810 | None:intergenic | 20.0% |
| !!! | TTTTTATAGCGTTAAAAGAT+AGG | - | chr2_2:60952795-60952814 | Msa0262180:CDS | 20.0% |
| !!! | TTTTATAGCGTTAAAAGATA+GGG | - | chr2_2:60952796-60952815 | Msa0262180:CDS | 20.0% |
| !!! | CAATTTAGAGCTTATTTTTT+AGG | + | chr2_2:60953208-60953227 | None:intergenic | 20.0% |
| !!! | TTATTATTCAAATGCACTTT+TGG | + | chr2_2:60953352-60953371 | None:intergenic | 20.0% |
| ! | TTGTGATTAGAATTGGTTAA+CGG | + | chr2_2:60951491-60951510 | None:intergenic | 25.0% |
| !!! | TGTTAGATAGTTTAGTCTTA+TGG | + | chr2_2:60951902-60951921 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGAGGAAAG+TGG | - | chr2_2:60952106-60952125 | Msa0262180:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_2:60952121-60952140 | Msa0262180:intron | 25.0% |
| ! | ACGGATGAAGTATATTAATT+TGG | - | chr2_2:60952269-60952288 | Msa0262180:intron | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_2:60952397-60952416 | Msa0262180:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_2:60952398-60952417 | Msa0262180:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_2:60952577-60952596 | Msa0262180:CDS | 25.0% |
| !!! | TCAAGTCTAGTTTTAAACTA+CGG | + | chr2_2:60952743-60952762 | None:intergenic | 25.0% |
| ! | ACTAGACTTGAATACATATT+TGG | - | chr2_2:60952752-60952771 | Msa0262180:CDS | 25.0% |
| !! | TAAAAAAATTTTCGCACGTT+TGG | + | chr2_2:60953327-60953346 | None:intergenic | 25.0% |
| !! | CTCTTAACAATATTTTGCAA+AGG | - | chr2_2:60953400-60953419 | Msa0262180:intron | 25.0% |
| ! | ATGCTTCTTAATTAAGGATT+TGG | + | chr2_2:60953682-60953701 | None:intergenic | 25.0% |
| ! | TTGTGATTAGAATTGGTTAA+CGG | + | chr2_2:60951491-60951510 | None:intergenic | 25.0% |
| !!! | TGTTAGATAGTTTAGTCTTA+TGG | + | chr2_2:60951902-60951921 | None:intergenic | 25.0% |
| ! | TGTATAAATAAAGAGGAAAG+TGG | - | chr2_2:60952106-60952125 | Msa0262180:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_2:60952121-60952140 | Msa0262180:intron | 25.0% |
| ! | ACGGATGAAGTATATTAATT+TGG | - | chr2_2:60952269-60952288 | Msa0262180:intron | 25.0% |
| ! | AGAGAAGAAAGAAAGTTTAA+TGG | - | chr2_2:60952397-60952416 | Msa0262180:intron | 25.0% |
| ! | GAGAAGAAAGAAAGTTTAAT+GGG | - | chr2_2:60952398-60952417 | Msa0262180:intron | 25.0% |
| ! | TATCTCTTCAAATTCTTCTT+TGG | - | chr2_2:60952577-60952596 | Msa0262180:CDS | 25.0% |
| !!! | TCAAGTCTAGTTTTAAACTA+CGG | + | chr2_2:60952743-60952762 | None:intergenic | 25.0% |
| ! | ACTAGACTTGAATACATATT+TGG | - | chr2_2:60952752-60952771 | Msa0262180:CDS | 25.0% |
| !! | TAAAAAAATTTTCGCACGTT+TGG | + | chr2_2:60953327-60953346 | None:intergenic | 25.0% |
| !! | CTCTTAACAATATTTTGCAA+AGG | - | chr2_2:60953400-60953419 | Msa0262180:intron | 25.0% |
| ! | ATGCTTCTTAATTAAGGATT+TGG | + | chr2_2:60953682-60953701 | None:intergenic | 25.0% |
| ! | TCTTGTTGATTATGTTCCAT+TGG | + | chr2_2:60951571-60951590 | None:intergenic | 30.0% |
| GAAAGGATGTTGAGAAAAAT+AGG | - | chr2_2:60951620-60951639 | Msa0262180:CDS | 30.0% | |
| GATGTAAATAATGCAACATG+TGG | - | chr2_2:60951795-60951814 | Msa0262180:intron | 30.0% | |
| !! | GTTTAGTCTTATGGTATGTT+AGG | + | chr2_2:60951893-60951912 | None:intergenic | 30.0% |
| AGAAAATGGATCAGATATTC+CGG | - | chr2_2:60952245-60952264 | Msa0262180:intron | 30.0% | |
| TACAAGTGATTGTAACATGT+GGG | - | chr2_2:60952492-60952511 | Msa0262180:intron | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | + | chr2_2:60952624-60952643 | None:intergenic | 30.0% | |
| ATTAAAGCTGCAATTGCAAT+TGG | - | chr2_2:60952714-60952733 | Msa0262180:CDS | 30.0% | |
| ! | ATAGCATGGTTCAACTTTTA+AGG | - | chr2_2:60953104-60953123 | Msa0262180:intron | 30.0% |
| ! | TAGCATGGTTCAACTTTTAA+GGG | - | chr2_2:60953105-60953124 | Msa0262180:intron | 30.0% |
| !! | TAAGCTCTAAATTGAGTTGT+AGG | - | chr2_2:60953214-60953233 | Msa0262180:intron | 30.0% |
| GAAAGACTAAATCATGTTTC+TGG | - | chr2_2:60953289-60953308 | Msa0262180:intron | 30.0% | |
| CCAAATTGTAACAAAGTTTG+TGG | + | chr2_2:60953520-60953539 | None:intergenic | 30.0% | |
| CCACAAACTTTGTTACAATT+TGG | - | chr2_2:60953517-60953536 | Msa0262180:CDS | 30.0% | |
| ! | TTAAGGATTTGGTAAACTCA+TGG | + | chr2_2:60953671-60953690 | None:intergenic | 30.0% |
| ! | TCTTGTTGATTATGTTCCAT+TGG | + | chr2_2:60951571-60951590 | None:intergenic | 30.0% |
| GAAAGGATGTTGAGAAAAAT+AGG | - | chr2_2:60951620-60951639 | Msa0262180:CDS | 30.0% | |
| GATGTAAATAATGCAACATG+TGG | - | chr2_2:60951795-60951814 | Msa0262180:intron | 30.0% | |
| !! | GTTTAGTCTTATGGTATGTT+AGG | + | chr2_2:60951893-60951912 | None:intergenic | 30.0% |
| AGAAAATGGATCAGATATTC+CGG | - | chr2_2:60952245-60952264 | Msa0262180:intron | 30.0% | |
| TACAAGTGATTGTAACATGT+GGG | - | chr2_2:60952492-60952511 | Msa0262180:intron | 30.0% | |
| TATATATACCTGAGCATGTA+CGG | + | chr2_2:60952624-60952643 | None:intergenic | 30.0% | |
| ATTAAAGCTGCAATTGCAAT+TGG | - | chr2_2:60952714-60952733 | Msa0262180:CDS | 30.0% | |
| ! | ATAGCATGGTTCAACTTTTA+AGG | - | chr2_2:60953104-60953123 | Msa0262180:intron | 30.0% |
| ! | TAGCATGGTTCAACTTTTAA+GGG | - | chr2_2:60953105-60953124 | Msa0262180:intron | 30.0% |
| !! | TAAGCTCTAAATTGAGTTGT+AGG | - | chr2_2:60953214-60953233 | Msa0262180:intron | 30.0% |
| GAAAGACTAAATCATGTTTC+TGG | - | chr2_2:60953289-60953308 | Msa0262180:intron | 30.0% | |
| CCAAATTGTAACAAAGTTTG+TGG | + | chr2_2:60953520-60953539 | None:intergenic | 30.0% | |
| CCACAAACTTTGTTACAATT+TGG | - | chr2_2:60953517-60953536 | Msa0262180:CDS | 30.0% | |
| ! | TTAAGGATTTGGTAAACTCA+TGG | + | chr2_2:60953671-60953690 | None:intergenic | 30.0% |
| AAATTCAAGGTTGCTTCCAA+TGG | - | chr2_2:60951552-60951571 | Msa0262180:CDS | 35.0% | |
| TTCAACCAAAGTCGAAAGAA+AGG | - | chr2_2:60951603-60951622 | Msa0262180:CDS | 35.0% | |
| AACATCCTTTCTTTCGACTT+TGG | + | chr2_2:60951611-60951630 | None:intergenic | 35.0% | |
| ! | GAGAGTTAAGTTTGGAATAG+AGG | + | chr2_2:60951663-60951682 | None:intergenic | 35.0% |
| AGGAAGAAGAGAGTTAAGTT+TGG | + | chr2_2:60951671-60951690 | None:intergenic | 35.0% | |
| TCTTCCTAGCTATAATTCGA+AGG | - | chr2_2:60951684-60951703 | Msa0262180:intron | 35.0% | |
| ATGACCTTCGAATTATAGCT+AGG | + | chr2_2:60951691-60951710 | None:intergenic | 35.0% | |
| CAAACTGGGTCAGATAAAAT+GGG | + | chr2_2:60952062-60952081 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAACT+GGG | + | chr2_2:60952076-60952095 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | + | chr2_2:60952077-60952096 | None:intergenic | 35.0% | |
| GAAAATGGATCAGATATTCC+GGG | - | chr2_2:60952246-60952265 | Msa0262180:intron | 35.0% | |
| TTAATATACTTCATCCGTCC+CGG | + | chr2_2:60952267-60952286 | None:intergenic | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_2:60952329-60952348 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_2:60952328-60952347 | Msa0262180:intron | 35.0% | |
| CCAACTTTAGATTTGTCTCT+AGG | + | chr2_2:60952373-60952392 | None:intergenic | 35.0% | |
| ! | CCTAGAGACAAATCTAAAGT+TGG | - | chr2_2:60952370-60952389 | Msa0262180:intron | 35.0% |
| GTTACAATCACTTGTAGAGT+GGG | + | chr2_2:60952488-60952507 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2_2:60952489-60952508 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2_2:60952491-60952510 | Msa0262180:intron | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2_2:60952493-60952512 | Msa0262180:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_2:60952581-60952600 | Msa0262180:CDS | 35.0% | |
| ! | TTTGTCGGGACAATGTTTTT+CGG | + | chr2_2:60952943-60952962 | None:intergenic | 35.0% |
| ! | TAGCATTTGGTGGAATACAT+GGG | + | chr2_2:60952973-60952992 | None:intergenic | 35.0% |
| ! | ATCCATTTGGTGGAATACAT+GGG | + | chr2_2:60953027-60953046 | None:intergenic | 35.0% |
| ! | AATCCATTTGGTGGAATACA+TGG | + | chr2_2:60953028-60953047 | None:intergenic | 35.0% |
| GAGCAATCAAAATAAGTGAG+AGG | - | chr2_2:60953539-60953558 | Msa0262180:CDS | 35.0% | |
| AGGTTGAAAGAGTTTGTGAA+CGG | - | chr2_2:60953559-60953578 | Msa0262180:CDS | 35.0% | |
| ATTTCAAGATCCCACAATTG+AGG | + | chr2_2:60953610-60953629 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_2:60953610-60953629 | Msa0262180:five_prime_UTR | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | - | chr2_2:60953623-60953642 | Msa0262180:five_prime_UTR | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | - | chr2_2:60953624-60953643 | Msa0262180:five_prime_UTR | 35.0% | |
| AAATTCAAGGTTGCTTCCAA+TGG | - | chr2_2:60951552-60951571 | Msa0262180:CDS | 35.0% | |
| TTCAACCAAAGTCGAAAGAA+AGG | - | chr2_2:60951603-60951622 | Msa0262180:CDS | 35.0% | |
| AACATCCTTTCTTTCGACTT+TGG | + | chr2_2:60951611-60951630 | None:intergenic | 35.0% | |
| ! | GAGAGTTAAGTTTGGAATAG+AGG | + | chr2_2:60951663-60951682 | None:intergenic | 35.0% |
| AGGAAGAAGAGAGTTAAGTT+TGG | + | chr2_2:60951671-60951690 | None:intergenic | 35.0% | |
| TCTTCCTAGCTATAATTCGA+AGG | - | chr2_2:60951684-60951703 | Msa0262180:intron | 35.0% | |
| ATGACCTTCGAATTATAGCT+AGG | + | chr2_2:60951691-60951710 | None:intergenic | 35.0% | |
| CAAACTGGGTCAGATAAAAT+GGG | + | chr2_2:60952062-60952081 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAACT+GGG | + | chr2_2:60952076-60952095 | None:intergenic | 35.0% | |
| ATCTGTGTGAAAAACCAAAC+TGG | + | chr2_2:60952077-60952096 | None:intergenic | 35.0% | |
| GAAAATGGATCAGATATTCC+GGG | - | chr2_2:60952246-60952265 | Msa0262180:intron | 35.0% | |
| TTAATATACTTCATCCGTCC+CGG | + | chr2_2:60952267-60952286 | None:intergenic | 35.0% | |
| TCATCTACTTGATCAGGTAA+TGG | + | chr2_2:60952329-60952348 | None:intergenic | 35.0% | |
| ATTACCTGATCAAGTAGATG+AGG | - | chr2_2:60952328-60952347 | Msa0262180:intron | 35.0% | |
| CCAACTTTAGATTTGTCTCT+AGG | + | chr2_2:60952373-60952392 | None:intergenic | 35.0% | |
| ! | CCTAGAGACAAATCTAAAGT+TGG | - | chr2_2:60952370-60952389 | Msa0262180:intron | 35.0% |
| GTTACAATCACTTGTAGAGT+GGG | + | chr2_2:60952488-60952507 | None:intergenic | 35.0% | |
| TGTTACAATCACTTGTAGAG+TGG | + | chr2_2:60952489-60952508 | None:intergenic | 35.0% | |
| CTACAAGTGATTGTAACATG+TGG | - | chr2_2:60952491-60952510 | Msa0262180:intron | 35.0% | |
| ACAAGTGATTGTAACATGTG+GGG | - | chr2_2:60952493-60952512 | Msa0262180:intron | 35.0% | |
| TCTTCAAATTCTTCTTTGGC+TGG | - | chr2_2:60952581-60952600 | Msa0262180:CDS | 35.0% | |
| ! | TTTGTCGGGACAATGTTTTT+CGG | + | chr2_2:60952943-60952962 | None:intergenic | 35.0% |
| ! | TAGCATTTGGTGGAATACAT+GGG | + | chr2_2:60952973-60952992 | None:intergenic | 35.0% |
| ! | ATCCATTTGGTGGAATACAT+GGG | + | chr2_2:60953027-60953046 | None:intergenic | 35.0% |
| ! | AATCCATTTGGTGGAATACA+TGG | + | chr2_2:60953028-60953047 | None:intergenic | 35.0% |
| GAGCAATCAAAATAAGTGAG+AGG | - | chr2_2:60953539-60953558 | Msa0262180:CDS | 35.0% | |
| AGGTTGAAAGAGTTTGTGAA+CGG | - | chr2_2:60953559-60953578 | Msa0262180:CDS | 35.0% | |
| ATTTCAAGATCCCACAATTG+AGG | + | chr2_2:60953610-60953629 | None:intergenic | 35.0% | |
| CAATTGTGGGATCTTGAAAT+TGG | - | chr2_2:60953610-60953629 | Msa0262180:five_prime_UTR | 35.0% | |
| TTGAAATTGGAAGTGAGAGT+TGG | - | chr2_2:60953623-60953642 | Msa0262180:five_prime_UTR | 35.0% | |
| TGAAATTGGAAGTGAGAGTT+GGG | - | chr2_2:60953624-60953643 | Msa0262180:five_prime_UTR | 35.0% | |
| CTTTCGACTTTGGTTGAACA+AGG | + | chr2_2:60951601-60951620 | None:intergenic | 40.0% | |
| CCAAACTGGGTCAGATAAAA+TGG | + | chr2_2:60952063-60952082 | None:intergenic | 40.0% | |
| ! | CCATTTTATCTGACCCAGTT+TGG | - | chr2_2:60952060-60952079 | Msa0262180:intron | 40.0% |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_2:60952335-60952354 | None:intergenic | 40.0% | |
| ! | TTGTCGGGACAATGTTTTTC+GGG | + | chr2_2:60952942-60952961 | None:intergenic | 40.0% |
| ! | TACATGGGTCGTGATTTTGT+CGG | + | chr2_2:60952958-60952977 | None:intergenic | 40.0% |
| ! | GTAGCATTTGGTGGAATACA+TGG | + | chr2_2:60952974-60952993 | None:intergenic | 40.0% |
| GGTCAAAGTAAAAGTGAGTG+GGG | + | chr2_2:60953006-60953025 | None:intergenic | 40.0% | |
| GGGTCAAAGTAAAAGTGAGT+GGG | + | chr2_2:60953007-60953026 | None:intergenic | 40.0% | |
| TGGGTCAAAGTAAAAGTGAG+TGG | + | chr2_2:60953008-60953027 | None:intergenic | 40.0% | |
| !! | CACCAAATGGATTGATCAAG+CGG | - | chr2_2:60953035-60953054 | Msa0262180:intron | 40.0% |
| AACCGCTTGATCAATCCATT+TGG | + | chr2_2:60953040-60953059 | None:intergenic | 40.0% | |
| CTTTCGACTTTGGTTGAACA+AGG | + | chr2_2:60951601-60951620 | None:intergenic | 40.0% | |
| CCAAACTGGGTCAGATAAAA+TGG | + | chr2_2:60952063-60952082 | None:intergenic | 40.0% | |
| ! | CCATTTTATCTGACCCAGTT+TGG | - | chr2_2:60952060-60952079 | Msa0262180:intron | 40.0% |
| ATAGCCTCATCTACTTGATC+AGG | + | chr2_2:60952335-60952354 | None:intergenic | 40.0% | |
| ! | TTGTCGGGACAATGTTTTTC+GGG | + | chr2_2:60952942-60952961 | None:intergenic | 40.0% |
| ! | TACATGGGTCGTGATTTTGT+CGG | + | chr2_2:60952958-60952977 | None:intergenic | 40.0% |
| ! | GTAGCATTTGGTGGAATACA+TGG | + | chr2_2:60952974-60952993 | None:intergenic | 40.0% |
| GGTCAAAGTAAAAGTGAGTG+GGG | + | chr2_2:60953006-60953025 | None:intergenic | 40.0% | |
| GGGTCAAAGTAAAAGTGAGT+GGG | + | chr2_2:60953007-60953026 | None:intergenic | 40.0% | |
| TGGGTCAAAGTAAAAGTGAG+TGG | + | chr2_2:60953008-60953027 | None:intergenic | 40.0% | |
| !! | CACCAAATGGATTGATCAAG+CGG | - | chr2_2:60953035-60953054 | Msa0262180:intron | 40.0% |
| AACCGCTTGATCAATCCATT+TGG | + | chr2_2:60953040-60953059 | None:intergenic | 40.0% | |
| GTCAGATAAAATGGGACGGA+GGG | + | chr2_2:60952054-60952073 | None:intergenic | 45.0% | |
| CTGGGTCAGATAAAATGGGA+CGG | + | chr2_2:60952058-60952077 | None:intergenic | 45.0% | |
| ATGGATCAGATATTCCGGGA+CGG | - | chr2_2:60952250-60952269 | Msa0262180:intron | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_2:60952613-60952632 | Msa0262180:CDS | 45.0% | |
| ! | ACATGGGTCGTGATTTTGTC+GGG | + | chr2_2:60952957-60952976 | None:intergenic | 45.0% |
| GACCCATGTATTCCACCAAA+TGG | - | chr2_2:60952968-60952987 | Msa0262180:intron | 45.0% | |
| CGCTTGATCAATCCATTTGG+TGG | + | chr2_2:60953037-60953056 | None:intergenic | 45.0% | |
| ATTGCTCGCGAGAAATAGCA+TGG | - | chr2_2:60953090-60953109 | Msa0262180:intron | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | - | chr2_2:60953596-60953615 | Msa0262180:five_prime_UTR | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | - | chr2_2:60953597-60953616 | Msa0262180:five_prime_UTR | 45.0% | |
| GTCAGATAAAATGGGACGGA+GGG | + | chr2_2:60952054-60952073 | None:intergenic | 45.0% | |
| CTGGGTCAGATAAAATGGGA+CGG | + | chr2_2:60952058-60952077 | None:intergenic | 45.0% | |
| ATGGATCAGATATTCCGGGA+CGG | - | chr2_2:60952250-60952269 | Msa0262180:intron | 45.0% | |
| TCTTCATACCGTACATGCTC+AGG | - | chr2_2:60952613-60952632 | Msa0262180:CDS | 45.0% | |
| ! | ACATGGGTCGTGATTTTGTC+GGG | + | chr2_2:60952957-60952976 | None:intergenic | 45.0% |
| GACCCATGTATTCCACCAAA+TGG | - | chr2_2:60952968-60952987 | Msa0262180:intron | 45.0% | |
| CGCTTGATCAATCCATTTGG+TGG | + | chr2_2:60953037-60953056 | None:intergenic | 45.0% | |
| ATTGCTCGCGAGAAATAGCA+TGG | - | chr2_2:60953090-60953109 | Msa0262180:intron | 45.0% | |
| TGGAAACACAGCCTCAATTG+TGG | - | chr2_2:60953596-60953615 | Msa0262180:five_prime_UTR | 45.0% | |
| GGAAACACAGCCTCAATTGT+GGG | - | chr2_2:60953597-60953616 | Msa0262180:five_prime_UTR | 45.0% | |
| !!! | TAAATTTATTTTTCTAATTT+TGG | + | chr2_2:60951865-60951884 | None:intergenic | 5.0% |
| !!! | TAAATTTATTTTTCTAATTT+TGG | + | chr2_2:60951865-60951884 | None:intergenic | 5.0% |
| GGTCAGATAAAATGGGACGG+AGG | + | chr2_2:60952055-60952074 | None:intergenic | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_2:60952553-60952572 | Msa0262180:CDS | 50.0% | |
| CCTGTTGCAGTAGCATTTGG+TGG | + | chr2_2:60952983-60953002 | None:intergenic | 50.0% | |
| CCACCAAATGCTACTGCAAC+AGG | - | chr2_2:60952980-60952999 | Msa0262180:intron | 50.0% | |
| TCAAGCGGTTGAGAGCCTTT+CGG | - | chr2_2:60953050-60953069 | Msa0262180:intron | 50.0% | |
| CGAGCAATAACATCCCGAAG+TGG | + | chr2_2:60953078-60953097 | None:intergenic | 50.0% | |
| GGTCAGATAAAATGGGACGG+AGG | + | chr2_2:60952055-60952074 | None:intergenic | 50.0% | |
| ACTGCATGAAGAGAACGTCG+AGG | - | chr2_2:60952553-60952572 | Msa0262180:CDS | 50.0% | |
| CCTGTTGCAGTAGCATTTGG+TGG | + | chr2_2:60952983-60953002 | None:intergenic | 50.0% | |
| CCACCAAATGCTACTGCAAC+AGG | - | chr2_2:60952980-60952999 | Msa0262180:intron | 50.0% | |
| TCAAGCGGTTGAGAGCCTTT+CGG | - | chr2_2:60953050-60953069 | Msa0262180:intron | 50.0% | |
| CGAGCAATAACATCCCGAAG+TGG | + | chr2_2:60953078-60953097 | None:intergenic | 50.0% | |
| GGGCCTGTTGCAGTAGCATT+TGG | + | chr2_2:60952986-60953005 | None:intergenic | 55.0% | |
| CAAGCGGTTGAGAGCCTTTC+GGG | - | chr2_2:60953051-60953070 | Msa0262180:intron | 55.0% | |
| AGAGCCTTTCGGGACCACTT+CGG | - | chr2_2:60953061-60953080 | Msa0262180:intron | 55.0% | |
| GAACGGATCTGTGAGCGATG+TGG | - | chr2_2:60953576-60953595 | Msa0262180:exon | 55.0% | |
| GGGCCTGTTGCAGTAGCATT+TGG | + | chr2_2:60952986-60953005 | None:intergenic | 55.0% | |
| CAAGCGGTTGAGAGCCTTTC+GGG | - | chr2_2:60953051-60953070 | Msa0262180:intron | 55.0% | |
| AGAGCCTTTCGGGACCACTT+CGG | - | chr2_2:60953061-60953080 | Msa0262180:intron | 55.0% | |
| GAACGGATCTGTGAGCGATG+TGG | - | chr2_2:60953576-60953595 | Msa0262180:exon | 55.0% | |
| GAGCCTTTCGGGACCACTTC+GGG | - | chr2_2:60953062-60953081 | Msa0262180:intron | 60.0% | |
| CATCCCGAAGTGGTCCCGAA+AGG | + | chr2_2:60953068-60953087 | None:intergenic | 60.0% | |
| GAGCCTTTCGGGACCACTTC+GGG | - | chr2_2:60953062-60953081 | Msa0262180:intron | 60.0% | |
| CATCCCGAAGTGGTCCCGAA+AGG | + | chr2_2:60953068-60953087 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 60951444 | 60953716 | 60951444 | ID=Msa0262180;Name=Msa0262180 |
| chr2_2 | mRNA | 60951444 | 60953716 | 60951444 | ID=Msa0262180-mRNA-1;Parent=Msa0262180;Name=Msa0262180-mRNA-1;_AED=0.01;_eAED=0.01;_QI=127|1|1|1|1|1|3|26|210 |
| chr2_2 | exon | 60951444 | 60951646 | 60951444 | ID=Msa0262180-mRNA-1:exon:18762;Parent=Msa0262180-mRNA-1 |
| chr2_2 | exon | 60952526 | 60952846 | 60952526 | ID=Msa0262180-mRNA-1:exon:18761;Parent=Msa0262180-mRNA-1 |
| chr2_2 | exon | 60953455 | 60953716 | 60953455 | ID=Msa0262180-mRNA-1:exon:18760;Parent=Msa0262180-mRNA-1 |
| chr2_2 | five_prime_UTR | 60953590 | 60953716 | 60953590 | ID=Msa0262180-mRNA-1:five_prime_utr;Parent=Msa0262180-mRNA-1 |
| chr2_2 | CDS | 60953455 | 60953589 | 60953455 | ID=Msa0262180-mRNA-1:cds;Parent=Msa0262180-mRNA-1 |
| chr2_2 | CDS | 60952526 | 60952846 | 60952526 | ID=Msa0262180-mRNA-1:cds;Parent=Msa0262180-mRNA-1 |
| chr2_2 | CDS | 60951470 | 60951646 | 60951470 | ID=Msa0262180-mRNA-1:cds;Parent=Msa0262180-mRNA-1 |
| chr2_2 | three_prime_UTR | 60951444 | 60951469 | 60951444 | ID=Msa0262180-mRNA-1:three_prime_utr;Parent=Msa0262180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
