AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0262620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262620 MtrunA17_Chr2g0325391 96.741 583 19 0 1 583 1 583 0.0 1159
Msa0262620 MtrunA17_Chr2g0325411 92.233 618 34 3 1 606 1 616 0.0 1132
Msa0262620 MtrunA17_Chr4g0040981 66.453 468 147 7 136 601 497 956 0.0 597
Msa0262620 MtrunA17_Chr4g0049471 44.954 327 127 9 254 549 83 387 1.62e-73 244
Msa0262620 MtrunA17_Chr4g0049491 45.367 313 128 8 265 549 128 425 1.16e-69 235
Msa0262620 MtrunA17_Chr3g0116311 39.313 262 118 6 297 549 207 436 2.20e-45 172
Msa0262620 MtrunA17_Chr7g0230041 37.931 261 136 3 294 553 180 415 3.87e-45 172
Msa0262620 MtrunA17_Chr2g0285151 56.190 105 46 0 300 404 83 187 9.21e-35 138
Msa0262620 MtrunA17_Chr8g0369041 29.268 246 155 4 293 535 90 319 7.76e-29 118
Msa0262620 MtrunA17_Chr6g0462121 31.120 241 137 5 303 535 88 307 1.05e-27 114
Msa0262620 MtrunA17_Chr7g0230031 59.494 79 32 0 294 372 195 273 2.74e-25 111
Msa0262620 MtrunA17_Chr2g0296681 30.131 229 132 6 311 535 94 298 4.90e-18 85.9
Msa0262620 MtrunA17_Chr2g0277091 38.298 94 57 1 303 395 202 295 2.64e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262620 AT1G06230.2 59.657 466 167 8 144 596 272 729 5.53e-163 486
Msa0262620 AT1G06230.4 59.657 466 167 8 144 596 272 729 5.53e-163 486
Msa0262620 AT1G06230.1 59.657 466 167 8 144 596 272 729 5.53e-163 486
Msa0262620 AT1G06230.3 59.657 466 167 8 144 596 272 729 5.53e-163 486
Msa0262620 AT1G73150.2 50.316 316 129 6 263 559 86 392 1.52e-84 272
Msa0262620 AT1G73150.1 50.316 316 129 6 263 559 86 392 2.93e-84 272
Msa0262620 AT1G17790.1 44.762 315 137 7 287 574 122 426 6.43e-72 240
Msa0262620 AT3G27260.4 40.486 247 115 6 297 537 177 397 3.65e-43 166
Msa0262620 AT3G27260.3 40.486 247 115 6 297 537 177 397 8.74e-43 165
Msa0262620 AT3G27260.1 40.486 247 115 6 297 537 177 397 9.93e-43 165
Msa0262620 AT3G27260.2 40.323 248 116 6 296 537 127 348 1.06e-42 165
Msa0262620 AT5G14270.3 37.066 259 135 5 293 550 134 365 5.67e-42 162
Msa0262620 AT5G14270.1 37.066 259 135 5 293 550 134 365 5.67e-42 162
Msa0262620 AT5G14270.2 37.066 259 135 5 293 550 134 365 7.17e-42 162
Msa0262620 AT3G01770.2 38.559 236 115 5 297 531 130 336 1.05e-39 152
Msa0262620 AT3G01770.1 38.559 236 115 5 297 531 130 336 3.25e-39 153
Msa0262620 AT5G63320.3 32.121 330 182 10 221 544 95 388 5.13e-36 142
Msa0262620 AT5G63320.2 32.121 330 182 10 221 544 95 388 5.13e-36 142
Msa0262620 AT5G63320.1 32.915 319 172 10 232 544 106 388 9.29e-36 144
Msa0262620 AT5G65630.1 62.000 100 38 0 292 391 165 264 1.02e-33 136
Msa0262620 AT5G65630.1 54.717 106 47 1 444 549 374 478 1.28e-27 118
Msa0262620 AT2G34900.2 30.522 249 155 3 297 544 1 232 3.45e-32 126
Msa0262620 AT5G10550.1 59.000 100 41 0 292 391 170 269 4.36e-32 131
Msa0262620 AT5G10550.1 57.292 96 41 0 454 549 378 473 1.77e-26 114
Msa0262620 AT2G34900.1 30.522 249 155 3 297 544 111 342 7.36e-32 128
Msa0262620 AT5G46550.1 47.107 121 57 2 300 414 73 192 1.97e-28 119
Msa0262620 AT3G52280.1 27.755 245 156 5 297 537 95 322 2.54e-24 105
Msa0262620 AT3G52280.2 27.686 242 156 4 297 535 112 337 3.23e-24 105

Find 202 sgRNAs with CRISPR-Local

Find 481 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTCCGTTGCAATTTA+TGG 0.049922 2_2:+61656055 Msa0262620:three_prime_UTR
GGTGAGGGAAAATAAGAATT+AGG 0.148252 2_2:+61650640 Msa0262620:five_prime_UTR
TCATCGTCTGGGTCTGATTC+AGG 0.166031 2_2:+61652851 Msa0262620:CDS
CAAGTTCTTCAAGTCATTAT+TGG 0.219764 2_2:+61656253 Msa0262620:three_prime_UTR
ACATGAACATCTTGCCCTTT+AGG 0.234304 2_2:-61651793 None:intergenic
ATGAGGTATGGCTTGGATTA+TGG 0.238032 2_2:+61651886 Msa0262620:CDS
AAACCCTAGATTTGAATTCT+AGG 0.247154 2_2:+61650590 Msa0262620:intron
GGAGAAATGGGACATGGATT+TGG 0.255723 2_2:+61651523 Msa0262620:CDS
CTAACACCATTACACTTAAC+TGG 0.281372 2_2:-61651342 None:intergenic
CGGTGAGGTCGTTGGTGATT+AGG 0.282820 2_2:+61651167 Msa0262620:CDS
CTCCGCCAGTTGTGAATTCT+AGG 0.296493 2_2:+61650921 Msa0262620:CDS
CGAGTCAAGCTCAAGGGATT+TGG 0.299517 2_2:-61652015 None:intergenic
GTTGTTCCTCATACTCATTC+TGG 0.307616 2_2:+61650794 Msa0262620:CDS
GATCGTTATAGGGTTGATAA+TGG 0.315135 2_2:+61651247 Msa0262620:CDS
GTGAGGGAAAATAAGAATTA+GGG 0.317479 2_2:+61650641 Msa0262620:five_prime_UTR
GAGAAATGGGACATGGATTT+GGG 0.327055 2_2:+61651524 Msa0262620:CDS
GAAATTCGAGTCGATAATAA+TGG 0.328180 2_2:+61652639 Msa0262620:CDS
GTGTGGATGCAGAGACTCTT+TGG 0.328188 2_2:+61652238 Msa0262620:CDS
AGCAGCTCAAGCAGTGATTC+TGG 0.334206 2_2:+61652681 Msa0262620:CDS
CAACTATAACTGGTGGTTCT+TGG 0.335527 2_2:-61652462 None:intergenic
TCAACAGTTGGATAGTGTTT+TGG 0.336808 2_2:+61650877 Msa0262620:CDS
AGTGCGTGCTTTCGCAAATA+AGG 0.345396 2_2:-61656078 None:intergenic
CGCAAGCAAGAATTCCGAAT+TGG 0.349984 2_2:-61651434 None:intergenic
TTCAATTTCATCATCATGTT+GGG 0.352389 2_2:-61652202 None:intergenic
TGAGGTATGGCTTGGATTAT+GGG 0.352869 2_2:+61651887 Msa0262620:CDS
CCCTTGCACGGGCAAGGATG+GGG 0.358928 2_2:-61652616 None:intergenic
ATGTGTCTGTGGATCGTTAT+AGG 0.361266 2_2:+61651236 Msa0262620:CDS
GTGTTCCGAGAGAGGCTAAT+AGG 0.362707 2_2:+61651311 Msa0262620:CDS
AGTGATAGCTCCTCATCGTC+TGG 0.364047 2_2:+61652839 Msa0262620:CDS
CTCGGGGCATCAACTATAAC+TGG 0.373580 2_2:-61652472 None:intergenic
TCCCCTTGCACGGGCAAGGA+TGG 0.381629 2_2:-61652618 None:intergenic
CATCTCACATCCGATGGACT+TGG 0.390431 2_2:+61651672 Msa0262620:CDS
GACTTCTTGTTACTCTCTGC+AGG 0.391383 2_2:-61651472 None:intergenic
GAAGCATGGCGTTGGAGAAA+TGG 0.393841 2_2:+61651510 Msa0262620:CDS
GGTTCCGGAGGATGGGAATT+CGG 0.396211 2_2:+61650898 Msa0262620:CDS
CCCCTTGCACGGGCAAGGAT+GGG 0.397080 2_2:-61652617 None:intergenic
ATTGTAATTTGACTCTATAA+TGG 0.399524 2_2:-61651857 None:intergenic
AAACCTGCTTGTCTTTCTCT+CGG 0.407774 2_2:-61652490 None:intergenic
AACCTGCTTGTCTTTCTCTC+GGG 0.408916 2_2:-61652489 None:intergenic
CAATAATGACTTGAAGAACT+TGG 0.409407 2_2:-61656252 None:intergenic
GCCTCTTGACATGAGGAATC+TGG 0.411079 2_2:+61651966 Msa0262620:CDS
AGAGGATAACGTTAATTCCT+TGG 0.411103 2_2:+61650769 Msa0262620:CDS
CAACGGATGGCTGGGAGGTA+TGG 0.413417 2_2:+61651202 Msa0262620:CDS
TTATCAGGATCGTTTGCCTT+CGG 0.416620 2_2:-61652066 None:intergenic
ACATCCTCCGCAAACTCCTT+TGG 0.418265 2_2:-61651736 None:intergenic
ACCGCCACCGTCACTGTTGA+TGG 0.421112 2_2:+61650824 Msa0262620:CDS
GAAGAGAAACAACGGATGGC+TGG 0.423094 2_2:+61651193 Msa0262620:CDS
GGTGAAACGGCACGCGTTTG+AGG 0.423664 2_2:-61650332 None:intergenic
GAATAGAACTGGTTCGCCTT+AGG 0.428319 2_2:-61651412 None:intergenic
CTTCAATTTCATCATCATGT+TGG 0.431836 2_2:-61652203 None:intergenic
ATTCCGAATTGGAATAGAAC+TGG 0.439085 2_2:-61651423 None:intergenic
CAGCATTATTCGAGGAAAGA+TGG 0.443395 2_2:+61651833 Msa0262620:CDS
CCCCATCCTTGCCCGTGCAA+GGG 0.443866 2_2:+61652616 Msa0262620:CDS
CTAGAAAGACTCCTGCTTTG+CGG 0.445924 2_2:+61651938 Msa0262620:CDS
GAGGAGATGTGATGATAAGA+AGG 0.445935 2_2:+61651054 Msa0262620:CDS
GGATAACGGGAATAATGTTT+CGG 0.452791 2_2:+61650853 Msa0262620:CDS
GATCATTAAGAAACGAAATT+CGG 0.453860 2_2:+61652173 Msa0262620:CDS
CATCGTCTGGGTCTGATTCA+GGG 0.454571 2_2:+61652852 Msa0262620:CDS
ATCGTTATAGGGTTGATAAT+GGG 0.456646 2_2:+61651248 Msa0262620:CDS
CACTCTGAGGTAGCTTCTGC+AGG 0.459504 2_2:+61651289 Msa0262620:CDS
AAGCATGGCGTTGGAGAAAT+GGG 0.460416 2_2:+61651511 Msa0262620:CDS
AGAGGCGGTGGCCGCAAAGC+AGG 0.462424 2_2:-61651949 None:intergenic
AACCCTAGATTTGAATTCTA+GGG 0.466617 2_2:+61650591 Msa0262620:intron
TAGTCTTGATGTTGTTCAGC+TGG 0.468758 2_2:+61651000 Msa0262620:CDS
ATTTGTTAGAACCAGCTTTG+AGG 0.470294 2_2:+61651035 Msa0262620:CDS
TACACGCCAGTTAAGTGTAA+TGG 0.471994 2_2:+61651336 Msa0262620:CDS
TTGATGGGACGAAGGATAAC+GGG 0.473241 2_2:+61650840 Msa0262620:CDS
CCATGACATATAATCCTAAA+GGG 0.476230 2_2:+61651779 Msa0262620:CDS
CCCTTTAGGATTATATGTCA+TGG 0.477104 2_2:-61651779 None:intergenic
AGTCGAGGCTCAGCAAGAAT+TGG 0.481219 2_2:+61651704 Msa0262620:CDS
AGGAGATGTGATGATAAGAA+GGG 0.481966 2_2:+61651055 Msa0262620:CDS
CCAACGACCTCACCGTTTCA+AGG 0.483405 2_2:-61651159 None:intergenic
ACGGTCGAAGCAAGAGATGC+GGG 0.484337 2_2:+61651111 Msa0262620:CDS
GAACCAGTTCTATTCCAATT+CGG 0.484886 2_2:+61651420 Msa0262620:CDS
GCCATGACATATAATCCTAA+AGG 0.486072 2_2:+61651778 Msa0262620:CDS
TAATGTTTCGGTTCAACAGT+TGG 0.486868 2_2:+61650865 Msa0262620:CDS
TGTGGATGCAGAGACTCTTT+GGG 0.487754 2_2:+61652239 Msa0262620:CDS
GTCTCTGTGGAGCGGTGAAA+CGG 0.488084 2_2:-61650345 None:intergenic
GGGATTAAAAGGAAGCTTGA+GGG 0.488906 2_2:+61651133 Msa0262620:CDS
CCAGTGGATGTTGAACGTCT+TGG 0.491052 2_2:+61651628 Msa0262620:CDS
CCTTGCACGGGCAAGGATGG+GGG 0.494527 2_2:-61652615 None:intergenic
TCTAGCTTGAATAGCAAGTT+CGG 0.494718 2_2:-61652319 None:intergenic
TGTGTCTGTGGATCGTTATA+GGG 0.499515 2_2:+61651237 Msa0262620:CDS
TTAAGAATGGACTGGCTTCA+CGG 0.501932 2_2:+61651092 Msa0262620:CDS
CTCTCTCTAGAAACGGTGTA+TGG 0.502013 2_2:-61650367 None:intergenic
AATTAGTGAAGGTGTTGAGA+AGG 0.503461 2_2:+61651378 Msa0262620:CDS
TTGGAGAATGGTGTTAAGAA+TGG 0.503549 2_2:+61651079 Msa0262620:CDS
AATTTCCCCTTGCACGGGCA+AGG 0.506581 2_2:-61652622 None:intergenic
GTGAAACGGCACGCGTTTGA+GGG 0.507750 2_2:-61650331 None:intergenic
AAATTCGAGTCGATAATAAT+GGG 0.507929 2_2:+61652640 Msa0262620:CDS
CTTCTGCTGGGCAATTCGCT+CGG 0.507968 2_2:-61652349 None:intergenic
TCATGAGATGAGGTATGGCT+TGG 0.513576 2_2:+61651879 Msa0262620:CDS
GTCAAGCTCAAGGGATTTGG+AGG 0.514668 2_2:-61652012 None:intergenic
TCCAACCTAGAATTCACAAC+TGG 0.516769 2_2:-61650926 None:intergenic
CATGGAAAGAAGCATGGCGT+TGG 0.520162 2_2:+61651502 Msa0262620:CDS
CCCATCCTTGCCCGTGCAAG+GGG 0.520316 2_2:+61652617 Msa0262620:CDS
ATCAACAGTGACGGTGGCGG+TGG 0.521030 2_2:-61650822 None:intergenic
GACTCGAATTTCCCCTTGCA+CGG 0.521051 2_2:-61652628 None:intergenic
GTTGATGGGACGAAGGATAA+CGG 0.523599 2_2:+61650839 Msa0262620:CDS
GCCAGTTGTGAATTCTAGGT+TGG 0.525168 2_2:+61650925 Msa0262620:CDS
GTCGAGTTTGAATCGTAGGC+AGG 0.526047 2_2:+61650967 Msa0262620:CDS
AGCATTATTCGAGGAAAGAT+GGG 0.527838 2_2:+61651834 Msa0262620:CDS
AGTGTAATGGTGTTAGAGAA+TGG 0.529484 2_2:+61651349 Msa0262620:CDS
TGATGAAACACAAGCACGGT+TGG 0.531315 2_2:+61651593 Msa0262620:CDS
TACAATCATGAGATGAGGTA+TGG 0.535160 2_2:+61651874 Msa0262620:CDS
AAGAGAAACAACGGATGGCT+GGG 0.537737 2_2:+61651194 Msa0262620:CDS
GCTCAAGGGATTTGGAGGGT+TGG 0.539474 2_2:-61652007 None:intergenic
GATAAGAAGGGGTTGGAGAA+TGG 0.540938 2_2:+61651067 Msa0262620:CDS
CAAATCACCAAAGGAGTTTG+CGG 0.541456 2_2:+61651729 Msa0262620:CDS
ACCTGCTTGTCTTTCTCTCG+GGG 0.543462 2_2:-61652488 None:intergenic
GATGAAACACAAGCACGGTT+GGG 0.544423 2_2:+61651594 Msa0262620:CDS
AGGGCAAGATGTTCATGTAA+TGG 0.545167 2_2:+61651798 Msa0262620:CDS
CCAAGACGTTCAACATCCAC+TGG 0.547510 2_2:-61651628 None:intergenic
ATTCGTCGAGTTTGAATCGT+AGG 0.549038 2_2:+61650963 Msa0262620:CDS
TCATCACATCTCCTCAAAGC+TGG 0.550575 2_2:-61651046 None:intergenic
GTCTTTCTAGACAGAGGTGA+AGG 0.552966 2_2:-61651925 None:intergenic
GATGTTGTTCAGCTGGAAGA+TGG 0.557828 2_2:+61651007 Msa0262620:CDS
GAGCTTTCTCTCTCTAGAAA+CGG 0.558141 2_2:-61650374 None:intergenic
TTCCTCATGTCAAGAGGCGG+TGG 0.558440 2_2:-61651961 None:intergenic
ATCTCACATCCGATGGACTT+GGG 0.558638 2_2:+61651673 Msa0262620:CDS
ACTCGAATTTCCCCTTGCAC+GGG 0.558672 2_2:-61652627 None:intergenic
GCTTGAGGGCGACCTTGAAA+CGG 0.560792 2_2:+61651147 Msa0262620:CDS
TATAGGGTTGATAATGGGAG+TGG 0.560910 2_2:+61651253 Msa0262620:CDS
TATTATCATCTCACATCCGA+TGG 0.564977 2_2:+61651666 Msa0262620:CDS
CGGATGGCTGGGAGGTATGG+TGG 0.565095 2_2:+61651205 Msa0262620:CDS
GAGATACAGAGATACTCGGA+GGG 0.565135 2_2:+61650713 Msa0262620:CDS
AAAGTTTGAGCAAATACAAG+AGG 0.565822 2_2:+61652292 Msa0262620:CDS
GTAGCACCAGAATGAGTATG+AGG 0.566136 2_2:-61650800 None:intergenic
GCCCCGAGAGAAAGACAAGC+AGG 0.567318 2_2:+61652487 Msa0262620:CDS
GTAAACCTATTAGCCTCTCT+CGG 0.567513 2_2:-61651316 None:intergenic
CCGCCACCGTCACTGTTGAT+GGG 0.567667 2_2:+61650825 Msa0262620:CDS
GGAGCCGAATTCCCATCCTC+CGG 0.571712 2_2:-61650902 None:intergenic
ATGTGATGATAAGAAGGGGT+TGG 0.572103 2_2:+61651060 Msa0262620:CDS
ACATGATGATGAAATTGAAG+TGG 0.573976 2_2:+61652206 Msa0262620:CDS
CGAGCGAATTGCCCAGCAGA+AGG 0.576938 2_2:+61652350 Msa0262620:CDS
GGGGACTGTAGCTGAAGATA+AGG 0.578014 2_2:+61650682 Msa0262620:CDS
TTGACATGAGGAATCTGGAT+AGG 0.578459 2_2:+61651971 Msa0262620:CDS
GTGATAGCTCCTCATCGTCT+GGG 0.578733 2_2:+61652840 Msa0262620:CDS
TTCTGCAGGTGTTCCGAGAG+AGG 0.582364 2_2:+61651303 Msa0262620:CDS
CATTCATTCATGCTACTGTA+CGG 0.584336 2_2:-61656294 None:intergenic
CCCATCAACAGTGACGGTGG+CGG 0.584798 2_2:-61650825 None:intergenic
CCTTGAAACGGTGAGGTCGT+TGG 0.585920 2_2:+61651159 Msa0262620:CDS
TGTGAATTCTAGGTTGGACG+TGG 0.587021 2_2:+61650931 Msa0262620:CDS
AGCTGAACGAGTCAAGCTCA+AGG 0.587721 2_2:-61652022 None:intergenic
TGAAGTGGACATTGATAGTG+TGG 0.589368 2_2:+61652221 Msa0262620:CDS
AGATGTTCATGTAATGGCGG+AGG 0.593716 2_2:+61651804 Msa0262620:CDS
GGTGAAGGTGCAGATATAGC+GGG 0.603194 2_2:-61651910 None:intergenic
GAAGGAGAAGAGAACACCTA+AGG 0.603536 2_2:+61651396 Msa0262620:CDS
AGGTGAAGGTGCAGATATAG+CGG 0.604052 2_2:-61651911 None:intergenic
GATTCTGGCTCTTCATCAAG+TGG 0.609326 2_2:+61652696 Msa0262620:CDS
AACCTAGAATTCACAACTGG+CGG 0.610102 2_2:-61650923 None:intergenic
TAGAGAGATACAGAGATACT+CGG 0.610318 2_2:+61650709 Msa0262620:CDS
GGCGTTGGAGAAATGGGACA+TGG 0.610803 2_2:+61651517 Msa0262620:CDS
GGAGCTATCAGCATTATTCG+AGG 0.611908 2_2:+61651825 Msa0262620:CDS
CACGGTCGAAGCAAGAGATG+CGG 0.611992 2_2:+61651110 Msa0262620:CDS
TTCACAGTACCCAAGTCCAT+CGG 0.615883 2_2:-61651682 None:intergenic
GGTCGAAGCAAGAGATGCGG+GGG 0.619895 2_2:+61651113 Msa0262620:CDS
AATGGTCATGGAATTAGTGA+AGG 0.620816 2_2:+61651367 Msa0262620:CDS
AGTATGAGGAACAACTTCCA+AGG 0.625080 2_2:-61650786 None:intergenic
CAAATTACAATCATGAGATG+AGG 0.627329 2_2:+61651869 Msa0262620:CDS
GCTGAACGAGTCAAGCTCAA+GGG 0.627872 2_2:-61652021 None:intergenic
TCCAGATTCCTCATGTCAAG+AGG 0.627985 2_2:-61651967 None:intergenic
TTTGAGCAAATACAAGAGGA+AGG 0.629083 2_2:+61652296 Msa0262620:CDS
TTGGGTGTTTAATACTCCAG+TGG 0.632618 2_2:+61651612 Msa0262620:CDS
GGCCACCGCCTCTTGACATG+AGG 0.633195 2_2:+61651959 Msa0262620:CDS
GCAGGAGTCTTTCTAGACAG+AGG 0.633710 2_2:-61651931 None:intergenic
AAATCACATGGAAAGAAGCA+TGG 0.633912 2_2:+61651496 Msa0262620:CDS
CGGTCGAAGCAAGAGATGCG+GGG 0.634842 2_2:+61651112 Msa0262620:CDS
ATGGTGTTAGAGAATGGTCA+TGG 0.636665 2_2:+61651355 Msa0262620:CDS
TGGTGGTTTGAATGTGTCTG+TGG 0.636743 2_2:+61651225 Msa0262620:CDS
GTGAACCTAAATACCTCCCA+AGG 0.637851 2_2:+61652880 Msa0262620:exon
AACAAGAAGTCAAAATCACA+TGG 0.638541 2_2:+61651484 Msa0262620:CDS
AGCTAAGCACGCTCACTCTG+AGG 0.643578 2_2:+61651276 Msa0262620:CDS
ACAAAATAACAATTCAACAA+TGG 0.643997 2_2:-61656196 None:intergenic
TTCTTGTTACTCTCTGCAGG+CGG 0.647277 2_2:-61651469 None:intergenic
AATAAGGCCATAAATTGCAA+CGG 0.650852 2_2:-61656062 None:intergenic
TCAAGCTCAAGGGATTTGGA+GGG 0.651277 2_2:-61652011 None:intergenic
CTAGATCTGATACAGAGTGA+AGG 0.652453 2_2:+61650439 Msa0262620:five_prime_UTR
CGTCCCATCAACAGTGACGG+TGG 0.653161 2_2:-61650828 None:intergenic
CTTCGTCCCATCAACAGTGA+CGG 0.654668 2_2:-61650831 None:intergenic
TGAATCAGACCCAGACGATG+AGG 0.655171 2_2:-61652849 None:intergenic
ATGGCTGGGAGGTATGGTGG+TGG 0.655927 2_2:+61651208 Msa0262620:CDS
GAAACGGTGTATGGTCTCTG+TGG 0.663908 2_2:-61650358 None:intergenic
GGGGATTAAAAGGAAGCTTG+AGG 0.665812 2_2:+61651132 Msa0262620:CDS
GAATGGTGTTAAGAATGGAC+TGG 0.666740 2_2:+61651084 Msa0262620:CDS
GCAAGATGTTCATGTAATGG+CGG 0.668019 2_2:+61651801 Msa0262620:CDS
CGTCACTGTTGATGGGACGA+AGG 0.671055 2_2:+61650832 Msa0262620:CDS
ATCACCAAAGGAGTTTGCGG+AGG 0.671626 2_2:+61651732 Msa0262620:CDS
AGATTCCTCATGTCAAGAGG+CGG 0.676274 2_2:-61651964 None:intergenic
TGTGTTATCTTCAAGATGTG+AGG 0.679433 2_2:+61653015 Msa0262620:three_prime_UTR
GATTGAAGAGAAACAACGGA+TGG 0.679746 2_2:+61651189 Msa0262620:CDS
GGGGCATCAACTATAACTGG+TGG 0.680239 2_2:-61652469 None:intergenic
GAATTGGTACAAATCACCAA+AGG 0.690101 2_2:+61651720 Msa0262620:CDS
ACTTGGGTACTGTGAAGTCG+AGG 0.692988 2_2:+61651689 Msa0262620:CDS
AGAAACAACGGATGGCTGGG+AGG 0.697772 2_2:+61651197 Msa0262620:CDS
AGGGCGACCTTGAAACGGTG+AGG 0.698598 2_2:+61651152 Msa0262620:CDS
AAGTTGATGAAACACAAGCA+CGG 0.699310 2_2:+61651589 Msa0262620:CDS
AGAGATACAGAGATACTCGG+AGG 0.700043 2_2:+61650712 Msa0262620:CDS
TTAGGATTGAAGAGAAACAA+CGG 0.702409 2_2:+61651185 Msa0262620:CDS
AGATACAGAGATACTCGGAG+GGG 0.714927 2_2:+61650714 Msa0262620:CDS
GGAGATGTGATGATAAGAAG+GGG 0.717368 2_2:+61651056 Msa0262620:CDS
GGTGTATGGTCTCTGTGGAG+CGG 0.730914 2_2:-61650353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGCATTCTTAAAATTTA+AGG + chr2_2:61653990-61654009 Msa0262620:intron 15.0%
!! ATTAAGAATGTATAATAAGT+TGG - chr2_2:61654566-61654585 None:intergenic 15.0%
!! AACTTATTATACATTCTTAA+TGG + chr2_2:61654565-61654584 Msa0262620:intron 15.0%
!!! ATAATTAGATAGTTTTTTGT+AGG + chr2_2:61656127-61656146 Msa0262620:three_prime_UTR 15.0%
!!! GATTTTTTTTTGCAATTGAT+CGG + chr2_2:61650502-61650521 Msa0262620:intron 20.0%
!! AAGATGAATCAGAAAAAATT+AGG - chr2_2:61650536-61650555 None:intergenic 20.0%
!! AAAATTGAACAAATTAAACC+CGG - chr2_2:61650561-61650580 None:intergenic 20.0%
!! AAAAAATTTCAAAGTTTCAG+AGG + chr2_2:61650751-61650770 Msa0262620:CDS 20.0%
!! ATTGTAATTTGACTCTATAA+TGG - chr2_2:61651860-61651879 None:intergenic 20.0%
!!! ATTAATTTTGACTTTCTTTC+TGG + chr2_2:61653306-61653325 Msa0262620:intron 20.0%
!!! TTTTATGGCATAATATTTTG+TGG + chr2_2:61653484-61653503 Msa0262620:intron 20.0%
!!! TATTGTTTAGGTTTCTTTTA+TGG + chr2_2:61653521-61653540 Msa0262620:intron 20.0%
!!! TTAAAATTTAAGGTGATTTC+AGG + chr2_2:61654000-61654019 Msa0262620:intron 20.0%
!!! TAAAATTTAAGGTGATTTCA+GGG + chr2_2:61654001-61654020 Msa0262620:intron 20.0%
!! ACCCATTATTATATTTGATT+TGG + chr2_2:61654069-61654088 Msa0262620:intron 20.0%
!! CCCAAATCAAATATAATAAT+GGG - chr2_2:61654073-61654092 None:intergenic 20.0%
!!! CCCATTATTATATTTGATTT+GGG + chr2_2:61654070-61654089 Msa0262620:intron 20.0%
!! TCCCAAATCAAATATAATAA+TGG - chr2_2:61654074-61654093 None:intergenic 20.0%
!! ATATTTATCAATTGGTATCA+AGG - chr2_2:61654231-61654250 None:intergenic 20.0%
!!! AACTGGATTTTTTAATGAAA+TGG - chr2_2:61654880-61654899 None:intergenic 20.0%
!! TTTCTTCTTTCTATCAATTT+CGG - chr2_2:61655066-61655085 None:intergenic 20.0%
!! AAATTGATAGAAAGAAGAAA+GGG + chr2_2:61655066-61655085 Msa0262620:intron 20.0%
!! CTACTTTCACAAAAAAAAAA+TGG - chr2_2:61655513-61655532 None:intergenic 20.0%
!! ATACAATACTTCTATTTACA+TGG + chr2_2:61655630-61655649 Msa0262620:intron 20.0%
!! ATTAACAATTTCAACAAGAT+TGG - chr2_2:61655687-61655706 None:intergenic 20.0%
!! ACAAAATAACAATTCAACAA+TGG - chr2_2:61656199-61656218 None:intergenic 20.0%
!!! GGGTTTAATTTGTTCAATTT+TGG + chr2_2:61650560-61650579 Msa0262620:intron 25.0%
! GATCATTAAGAAACGAAATT+CGG + chr2_2:61652173-61652192 Msa0262620:CDS 25.0%
! TTCAATTTCATCATCATGTT+GGG - chr2_2:61652205-61652224 None:intergenic 25.0%
! AAATTCGAGTCGATAATAAT+GGG + chr2_2:61652640-61652659 Msa0262620:CDS 25.0%
! CCTTGTATAACCTAAATTAT+GGG - chr2_2:61652753-61652772 None:intergenic 25.0%
! ACCTTGTATAACCTAAATTA+TGG - chr2_2:61652754-61652773 None:intergenic 25.0%
! TTTGAATAAAAGTAAAAGCC+AGG - chr2_2:61652780-61652799 None:intergenic 25.0%
! CATATAACGAGATAAAAACT+TGG - chr2_2:61652920-61652939 None:intergenic 25.0%
!!! TGAATGCATTTCTATTTTTC+TGG + chr2_2:61653039-61653058 Msa0262620:three_prime_UTR 25.0%
! TTGGAATTTGGATATTTAAG+AGG + chr2_2:61653122-61653141 Msa0262620:intron 25.0%
!! AGATCAACTTTTATGCTTTT+AGG + chr2_2:61653171-61653190 Msa0262620:intron 25.0%
!! GATCAACTTTTATGCTTTTA+GGG + chr2_2:61653172-61653191 Msa0262620:intron 25.0%
! TAAAAGCTAAAAACTAACAC+AGG - chr2_2:61653367-61653386 None:intergenic 25.0%
!! TTTACTGTGTACACATTTTA+TGG + chr2_2:61653469-61653488 Msa0262620:intron 25.0%
! TTCAAGATGTGATATTGTTT+AGG + chr2_2:61653509-61653528 Msa0262620:intron 25.0%
! AACACTAATTACACTTATGT+TGG - chr2_2:61653685-61653704 None:intergenic 25.0%
! TTGTAATAAAATAGAGCTTC+TGG + chr2_2:61653709-61653728 Msa0262620:intron 25.0%
! TGTAATAAAATAGAGCTTCT+GGG + chr2_2:61653710-61653729 Msa0262620:intron 25.0%
!!! TTTTAAGAATGCATATCACT+GGG - chr2_2:61653986-61654005 None:intergenic 25.0%
!!! ATTTTAAGAATGCATATCAC+TGG - chr2_2:61653987-61654006 None:intergenic 25.0%
!!! ATTATATTTGATTTGGGACT+TGG + chr2_2:61654076-61654095 Msa0262620:intron 25.0%
!!! TTATATTTGATTTGGGACTT+GGG + chr2_2:61654077-61654096 Msa0262620:intron 25.0%
!! AAAGCATTATAGAGTTTAAC+AGG - chr2_2:61654157-61654176 None:intergenic 25.0%
! GTGCTTTGATATTTATCAAT+TGG - chr2_2:61654239-61654258 None:intergenic 25.0%
!! TGCATAATTTAAGGTTACAT+CGG + chr2_2:61654408-61654427 Msa0262620:intron 25.0%
!! TTTTCTTGTTCATTTAGTGT+TGG + chr2_2:61654448-61654467 Msa0262620:intron 25.0%
! TGGTAACAAATAAAAGAAAC+CGG - chr2_2:61654546-61654565 None:intergenic 25.0%
! TCTGTTCATCTAGTTAAAAT+TGG - chr2_2:61654640-61654659 None:intergenic 25.0%
!!! AATTTTAACTAGATGAACAG+AGG + chr2_2:61654639-61654658 Msa0262620:intron 25.0%
! CATTAGTATAACTATATCGA+TGG + chr2_2:61654664-61654683 Msa0262620:intron 25.0%
!!! ATTTTTTAATGAAATGGACC+GGG - chr2_2:61654874-61654893 None:intergenic 25.0%
!!! GATTTTTTAATGAAATGGAC+CGG - chr2_2:61654875-61654894 None:intergenic 25.0%
!!! TTGGTTTTTTAAAATGGGTT+CGG - chr2_2:61654905-61654924 None:intergenic 25.0%
!!! GGGTATTGGTTTTTTAAAAT+GGG - chr2_2:61654910-61654929 None:intergenic 25.0%
!!! TGGGTATTGGTTTTTTAAAA+TGG - chr2_2:61654911-61654930 None:intergenic 25.0%
! AATTTGAAGAGAGAAAAAGA+GGG + chr2_2:61654991-61655010 Msa0262620:intron 25.0%
! GAAATTGATAGAAAGAAGAA+AGG + chr2_2:61655065-61655084 Msa0262620:intron 25.0%
! TTGAATTTACGTTCAGATTT+GGG + chr2_2:61655305-61655324 Msa0262620:intron 25.0%
! AAAGAATATGTGAAAAAACC+CGG + chr2_2:61655375-61655394 Msa0262620:intron 25.0%
! CTAGATTTATGGATACAATT+TGG - chr2_2:61655545-61655564 None:intergenic 25.0%
! TTGTATCCATAAATCTAGTA+TGG + chr2_2:61655547-61655566 Msa0262620:intron 25.0%
! TTTACAATGTAACTTTGTGT+TGG + chr2_2:61655737-61655756 Msa0262620:intron 25.0%
!!! CAGTTTTAAAATGCATTAAG+AGG - chr2_2:61655775-61655794 None:intergenic 25.0%
! TCAAAAGGAAAAGAAAAGTT+AGG - chr2_2:61655856-61655875 None:intergenic 25.0%
!!! CTTTTCCTTTTGATTTCAAA+TGG + chr2_2:61655863-61655882 Msa0262620:intron 25.0%
! TTTTTCTGATTCATCTTCAC+CGG + chr2_2:61650539-61650558 Msa0262620:intron 30.0%
AAACCCTAGATTTGAATTCT+AGG + chr2_2:61650590-61650609 Msa0262620:intron 30.0%
AACCCTAGATTTGAATTCTA+GGG + chr2_2:61650591-61650610 Msa0262620:intron 30.0%
AACCCTAGAATTCAAATCTA+GGG - chr2_2:61650596-61650615 None:intergenic 30.0%
AAACCCTAGAATTCAAATCT+AGG - chr2_2:61650597-61650616 None:intergenic 30.0%
!!! TTTGAATTCTAGGGTTTTCT+AGG + chr2_2:61650600-61650619 Msa0262620:five_prime_UTR 30.0%
!!! TTGAATTCTAGGGTTTTCTA+GGG + chr2_2:61650601-61650620 Msa0262620:five_prime_UTR 30.0%
GTGAGGGAAAATAAGAATTA+GGG + chr2_2:61650641-61650660 Msa0262620:five_prime_UTR 30.0%
!!! GAATTAGGGTTTTGAATGAA+TGG + chr2_2:61650655-61650674 Msa0262620:exon 30.0%
TTAGGATTGAAGAGAAACAA+CGG + chr2_2:61651185-61651204 Msa0262620:CDS 30.0%
!! ATCGTTATAGGGTTGATAAT+GGG + chr2_2:61651248-61651267 Msa0262620:CDS 30.0%
AACAAGAAGTCAAAATCACA+TGG + chr2_2:61651484-61651503 Msa0262620:CDS 30.0%
CCATGACATATAATCCTAAA+GGG + chr2_2:61651779-61651798 Msa0262620:CDS 30.0%
CAAATTACAATCATGAGATG+AGG + chr2_2:61651869-61651888 Msa0262620:CDS 30.0%
! TATGTCATGTCTCTTTTATC+AGG - chr2_2:61652084-61652103 None:intergenic 30.0%
!!! ACAATAGCATCTAGTTTTTC+AGG - chr2_2:61652150-61652169 None:intergenic 30.0%
CTTCAATTTCATCATCATGT+TGG - chr2_2:61652206-61652225 None:intergenic 30.0%
! ACATGATGATGAAATTGAAG+TGG + chr2_2:61652206-61652225 Msa0262620:CDS 30.0%
! GCTCAAACTTTTCTTATAGT+TGG - chr2_2:61652283-61652302 None:intergenic 30.0%
AAAGTTTGAGCAAATACAAG+AGG + chr2_2:61652292-61652311 Msa0262620:CDS 30.0%
TTAATATCCAGTGTCTTCTT+TGG + chr2_2:61652394-61652413 Msa0262620:intron 30.0%
GAAATTCGAGTCGATAATAA+TGG + chr2_2:61652639-61652658 Msa0262620:CDS 30.0%
AGATATCTGTCCCATAATTT+AGG + chr2_2:61652740-61652759 Msa0262620:intron 30.0%
! CCCATAATTTAGGTTATACA+AGG + chr2_2:61652750-61652769 Msa0262620:intron 30.0%
! TTTTCTGCATCAAATTGTCT+GGG + chr2_2:61652961-61652980 Msa0262620:three_prime_UTR 30.0%
!!! GCTTTCTTTTGATTTCATAG+AGG + chr2_2:61652986-61653005 Msa0262620:three_prime_UTR 30.0%
TTAGGTTTACATCTACGTAT+TGG + chr2_2:61653103-61653122 Msa0262620:intron 30.0%
TACATCTACGTATTGGAATT+TGG + chr2_2:61653110-61653129 Msa0262620:intron 30.0%
! TTGTTATAGTCTCTTGTTGT+AGG + chr2_2:61653394-61653413 Msa0262620:intron 30.0%
! GTGAAGATCTTATGCTTTTA+CGG + chr2_2:61653440-61653459 Msa0262620:intron 30.0%
! TGAAGATCTTATGCTTTTAC+GGG + chr2_2:61653441-61653460 Msa0262620:intron 30.0%
ATGCAAAAATCACAATCTCT+TGG - chr2_2:61653555-61653574 None:intergenic 30.0%
TTTAACAAATTCAGCTACGA+GGG - chr2_2:61653594-61653613 None:intergenic 30.0%
ATTTAACAAATTCAGCTACG+AGG - chr2_2:61653595-61653614 None:intergenic 30.0%
!! CGTAGCTGAATTTGTTAAAT+TGG + chr2_2:61653595-61653614 Msa0262620:intron 30.0%
!!! GATTTCAGGGTTTTTTGTAT+TGG + chr2_2:61654014-61654033 Msa0262620:intron 30.0%
!! CCTTGATAGCTAACTTTTAA+GGG - chr2_2:61654274-61654293 None:intergenic 30.0%
CCTTAAAAGTTAGCTATCAA+GGG + chr2_2:61654272-61654291 Msa0262620:intron 30.0%
GAATTATGAGGTATGTGATT+GGG - chr2_2:61654332-61654351 None:intergenic 30.0%
AGAATTATGAGGTATGTGAT+TGG - chr2_2:61654333-61654352 None:intergenic 30.0%
CCAAACTAAACAGAATTATG+AGG - chr2_2:61654344-61654363 None:intergenic 30.0%
CCTCATAATTCTGTTTAGTT+TGG + chr2_2:61654341-61654360 Msa0262620:intron 30.0%
TGTTAGGGATGCATAATTTA+AGG + chr2_2:61654399-61654418 Msa0262620:intron 30.0%
!!! TGTCATTGATTTTGAAATGC+CGG + chr2_2:61654524-61654543 Msa0262620:intron 30.0%
CGGAAAATAACTATGAGATA+TGG - chr2_2:61654704-61654723 None:intergenic 30.0%
! CTACTATTTGTATCACCTTT+TGG - chr2_2:61654732-61654751 None:intergenic 30.0%
CAAAAGGTGATACAAATAGT+AGG + chr2_2:61654730-61654749 Msa0262620:intron 30.0%
!!! TGTAAAAGTCCACTTTTTGT+TGG + chr2_2:61654837-61654856 Msa0262620:intron 30.0%
!! AGTTTTGATCCAACAAAAAG+TGG - chr2_2:61654849-61654868 None:intergenic 30.0%
! TTTCTTCATGATCTGAAATG+CGG - chr2_2:61654943-61654962 None:intergenic 30.0%
CAATTTGAAGAGAGAAAAAG+AGG + chr2_2:61654990-61655009 Msa0262620:intron 30.0%
CTTGAATTTACGTTCAGATT+TGG + chr2_2:61655304-61655323 Msa0262620:intron 30.0%
AGAATTGAACTGTATCAAAC+TGG + chr2_2:61655475-61655494 Msa0262620:intron 30.0%
ACTGAACCATACTAGATTTA+TGG - chr2_2:61655556-61655575 None:intergenic 30.0%
AAATCTAGTATGGTTCAGTT+TGG + chr2_2:61655557-61655576 Msa0262620:intron 30.0%
AAGTGTAATACTGAGACATA+GGG - chr2_2:61655600-61655619 None:intergenic 30.0%
AAAGTGTAATACTGAGACAT+AGG - chr2_2:61655601-61655620 None:intergenic 30.0%
AATGTAACTTTGTGTTGGAA+TGG + chr2_2:61655742-61655761 Msa0262620:intron 30.0%
AAAAGTTAGGAGTAGTTAGT+TGG - chr2_2:61655843-61655862 None:intergenic 30.0%
! ATCTGCCATTTGAAATCAAA+AGG - chr2_2:61655871-61655890 None:intergenic 30.0%
AAAAATCTCTACTGCACATT+AGG - chr2_2:61656018-61656037 None:intergenic 30.0%
AATAAGGCCATAAATTGCAA+CGG - chr2_2:61656065-61656084 None:intergenic 30.0%
CAATAATGACTTGAAGAACT+TGG - chr2_2:61656255-61656274 None:intergenic 30.0%
CAAGTTCTTCAAGTCATTAT+TGG + chr2_2:61656253-61656272 Msa0262620:three_prime_UTR 30.0%
! TTTTCTGATTCATCTTCACC+GGG + chr2_2:61650540-61650559 Msa0262620:intron 35.0%
!!! TAGGGTTTGGCTTTGATTTT+TGG + chr2_2:61650619-61650638 Msa0262620:five_prime_UTR 35.0%
!!! TTTGGCTTTGATTTTTGGTG+AGG + chr2_2:61650624-61650643 Msa0262620:five_prime_UTR 35.0%
!!! TTGGCTTTGATTTTTGGTGA+GGG + chr2_2:61650625-61650644 Msa0262620:five_prime_UTR 35.0%
GGTGAGGGAAAATAAGAATT+AGG + chr2_2:61650640-61650659 Msa0262620:five_prime_UTR 35.0%
!!! GGGTTTTGAATGAATGGATT+CGG + chr2_2:61650661-61650680 Msa0262620:exon 35.0%
!!! GGTTTTGAATGAATGGATTC+GGG + chr2_2:61650662-61650681 Msa0262620:exon 35.0%
!! GTTTTGAATGAATGGATTCG+GGG + chr2_2:61650663-61650682 Msa0262620:exon 35.0%
TAGAGAGATACAGAGATACT+CGG + chr2_2:61650709-61650728 Msa0262620:CDS 35.0%
AGAGGATAACGTTAATTCCT+TGG + chr2_2:61650769-61650788 Msa0262620:CDS 35.0%
!! GGATAACGGGAATAATGTTT+CGG + chr2_2:61650853-61650872 Msa0262620:CDS 35.0%
TAATGTTTCGGTTCAACAGT+TGG + chr2_2:61650865-61650884 Msa0262620:CDS 35.0%
! TCAACAGTTGGATAGTGTTT+TGG + chr2_2:61650877-61650896 Msa0262620:CDS 35.0%
! ATTTGTTAGAACCAGCTTTG+AGG + chr2_2:61651035-61651054 Msa0262620:CDS 35.0%
AGGAGATGTGATGATAAGAA+GGG + chr2_2:61651055-61651074 Msa0262620:CDS 35.0%
! TTGGAGAATGGTGTTAAGAA+TGG + chr2_2:61651079-61651098 Msa0262620:CDS 35.0%
!! GATCGTTATAGGGTTGATAA+TGG + chr2_2:61651247-61651266 Msa0262620:CDS 35.0%
CTAACACCATTACACTTAAC+TGG - chr2_2:61651345-61651364 None:intergenic 35.0%
! AGTGTAATGGTGTTAGAGAA+TGG + chr2_2:61651349-61651368 Msa0262620:CDS 35.0%
AATGGTCATGGAATTAGTGA+AGG + chr2_2:61651367-61651386 Msa0262620:CDS 35.0%
!! AATTAGTGAAGGTGTTGAGA+AGG + chr2_2:61651378-61651397 Msa0262620:CDS 35.0%
GAACCAGTTCTATTCCAATT+CGG + chr2_2:61651420-61651439 Msa0262620:CDS 35.0%
ATTCCGAATTGGAATAGAAC+TGG - chr2_2:61651426-61651445 None:intergenic 35.0%
AAATCACATGGAAAGAAGCA+TGG + chr2_2:61651496-61651515 Msa0262620:CDS 35.0%
!! AAGTTGATGAAACACAAGCA+CGG + chr2_2:61651589-61651608 Msa0262620:CDS 35.0%
TATTATCATCTCACATCCGA+TGG + chr2_2:61651666-61651685 Msa0262620:CDS 35.0%
GAATTGGTACAAATCACCAA+AGG + chr2_2:61651720-61651739 Msa0262620:CDS 35.0%
GCCATGACATATAATCCTAA+AGG + chr2_2:61651778-61651797 Msa0262620:CDS 35.0%
!! CCCTTTAGGATTATATGTCA+TGG - chr2_2:61651782-61651801 None:intergenic 35.0%
AGCATTATTCGAGGAAAGAT+GGG + chr2_2:61651834-61651853 Msa0262620:CDS 35.0%
TACAATCATGAGATGAGGTA+TGG + chr2_2:61651874-61651893 Msa0262620:CDS 35.0%
!!! ATAGCATCTAGTTTTTCAGG+TGG - chr2_2:61652147-61652166 None:intergenic 35.0%
TTTGAGCAAATACAAGAGGA+AGG + chr2_2:61652296-61652315 Msa0262620:CDS 35.0%
! TCTAGCTTGAATAGCAAGTT+CGG - chr2_2:61652322-61652341 None:intergenic 35.0%
! TGTCAATTTTACCTTCTGCT+GGG - chr2_2:61652364-61652383 None:intergenic 35.0%
! TTGTCAATTTTACCTTCTGC+TGG - chr2_2:61652365-61652384 None:intergenic 35.0%
TTATTTGCCAAAGAAGACAC+TGG - chr2_2:61652404-61652423 None:intergenic 35.0%
CAACAATAATAGTCCACAAG+AGG - chr2_2:61652518-61652537 None:intergenic 35.0%
!!! TTTTACCTTGGGAGGTATTT+AGG - chr2_2:61652888-61652907 None:intergenic 35.0%
! GGAGTTTGTGATTTTACCTT+GGG - chr2_2:61652899-61652918 None:intergenic 35.0%
! TGGAGTTTGTGATTTTACCT+TGG - chr2_2:61652900-61652919 None:intergenic 35.0%
! GTTTTCTGCATCAAATTGTC+TGG + chr2_2:61652960-61652979 Msa0262620:three_prime_UTR 35.0%
TGTGTTATCTTCAAGATGTG+AGG + chr2_2:61653015-61653034 Msa0262620:three_prime_UTR 35.0%
!! TTCTATTTTTCTGGTGCACA+AGG + chr2_2:61653048-61653067 Msa0262620:three_prime_UTR 35.0%
TACGTAGATGTAAACCTAAC+TGG - chr2_2:61653102-61653121 None:intergenic 35.0%
TTAAGAGGTTCATGTGTTAC+AGG + chr2_2:61653137-61653156 Msa0262620:intron 35.0%
AATAAAATAGAGCTTCTGGG+TGG + chr2_2:61653713-61653732 Msa0262620:intron 35.0%
ATAAAATAGAGCTTCTGGGT+GGG + chr2_2:61653714-61653733 Msa0262620:intron 35.0%
TTTGTAGAATTCAGGCTTCA+AGG - chr2_2:61653949-61653968 None:intergenic 35.0%
! TTGGGGTTTTTGTAGAATTC+AGG - chr2_2:61653957-61653976 None:intergenic 35.0%
ATATCACTGGGTGTAATTTG+GGG - chr2_2:61653974-61653993 None:intergenic 35.0%
CATATCACTGGGTGTAATTT+GGG - chr2_2:61653975-61653994 None:intergenic 35.0%
!! TATAATAATGGGTTGCTCAG+TGG - chr2_2:61654062-61654081 None:intergenic 35.0%
TATGATAGACTCGGGTATTA+TGG - chr2_2:61654107-61654126 None:intergenic 35.0%
CATTATAGAGTTTAACAGGC+AGG - chr2_2:61654153-61654172 None:intergenic 35.0%
!! GATAGCTAACTTTTAAGGGA+GGG - chr2_2:61654270-61654289 None:intergenic 35.0%
!! TGATAGCTAACTTTTAAGGG+AGG - chr2_2:61654271-61654290 None:intergenic 35.0%
CCCTTAAAAGTTAGCTATCA+AGG + chr2_2:61654271-61654290 Msa0262620:intron 35.0%
!! CCCTTGATAGCTAACTTTTA+AGG - chr2_2:61654275-61654294 None:intergenic 35.0%
TGAAACTAACTGTTTGCTCA+GGG + chr2_2:61654374-61654393 Msa0262620:intron 35.0%
GGTAACAGAACAGCTAATAA+GGG - chr2_2:61654485-61654504 None:intergenic 35.0%
AGGTAACAGAACAGCTAATA+AGG - chr2_2:61654486-61654505 None:intergenic 35.0%
CAAACTCTAATTATGACAGC+AGG - chr2_2:61654506-61654525 None:intergenic 35.0%
! CTATTTGTATCACCTTTTGG+AGG - chr2_2:61654729-61654748 None:intergenic 35.0%
CCTACTGAGACATATTTACA+GGG - chr2_2:61654762-61654781 None:intergenic 35.0%
CCTGTAAATATGTCTCAGTA+GGG + chr2_2:61654760-61654779 Msa0262620:intron 35.0%
CTGTAAATATGTCTCAGTAG+GGG + chr2_2:61654761-61654780 Msa0262620:intron 35.0%
GAAAACCAGAAATCATGAAC+TGG + chr2_2:61654791-61654810 Msa0262620:intron 35.0%
! ATGAACTGGTCTGGAAAATT+AGG + chr2_2:61654805-61654824 Msa0262620:intron 35.0%
! TTAAAATGGGTTCGGTTAAC+TGG - chr2_2:61654897-61654916 None:intergenic 35.0%
TGAAATGCGGTTCATCATTT+GGG - chr2_2:61654930-61654949 None:intergenic 35.0%
AGAAAGGGAGAAATATACGA+CGG + chr2_2:61655081-61655100 Msa0262620:intron 35.0%
!!! AACCAGTTTTTTACCTGAAC+CGG - chr2_2:61655430-61655449 None:intergenic 35.0%
! TTCAGGTAAAAAACTGGTTC+AGG + chr2_2:61655431-61655450 Msa0262620:intron 35.0%
AGTTCAATTCTGTTCAGTAC+CGG - chr2_2:61655466-61655485 None:intergenic 35.0%
AGTGTAATACTGAGACATAG+GGG - chr2_2:61655599-61655618 None:intergenic 35.0%
!! GTAGTTAGTTGGCACTTTTT+AGG - chr2_2:61655832-61655851 None:intergenic 35.0%
!!! CTTTTGAAGCTTCCAGATTA+TGG + chr2_2:61655938-61655957 Msa0262620:intron 35.0%
CCAAATTCAGATCCATAATC+TGG - chr2_2:61655953-61655972 None:intergenic 35.0%
CCAGATTATGGATCTGAATT+TGG + chr2_2:61655950-61655969 Msa0262620:intron 35.0%
ATGGATCTGAATTTGGCATT+TGG + chr2_2:61655957-61655976 Msa0262620:intron 35.0%
TTTGCAGAGAAATCTTCTGA+AGG + chr2_2:61655980-61655999 Msa0262620:intron 35.0%
AACTGTTCCGTTGCAATTTA+TGG + chr2_2:61656055-61656074 Msa0262620:three_prime_UTR 35.0%
! GAGCTTTCTCTCTCTAGAAA+CGG - chr2_2:61650377-61650396 None:intergenic 40.0%
CTAGATCTGATACAGAGTGA+AGG + chr2_2:61650439-61650458 Msa0262620:five_prime_UTR 40.0%
!!! TTCTAGGGTTTTCTAGGGTT+TGG + chr2_2:61650606-61650625 Msa0262620:five_prime_UTR 40.0%
AGTATGAGGAACAACTTCCA+AGG - chr2_2:61650789-61650808 None:intergenic 40.0%
GTTGTTCCTCATACTCATTC+TGG + chr2_2:61650794-61650813 Msa0262620:CDS 40.0%
!!! GTTGGATAGTGTTTTGGTTC+CGG + chr2_2:61650883-61650902 Msa0262620:CDS 40.0%
AACCTAGAATTCACAACTGG+CGG - chr2_2:61650926-61650945 None:intergenic 40.0%
TCCAACCTAGAATTCACAAC+TGG - chr2_2:61650929-61650948 None:intergenic 40.0%
ATTCGTCGAGTTTGAATCGT+AGG + chr2_2:61650963-61650982 Msa0262620:CDS 40.0%
! TAGTCTTGATGTTGTTCAGC+TGG + chr2_2:61651000-61651019 Msa0262620:CDS 40.0%
GAGGAGATGTGATGATAAGA+AGG + chr2_2:61651054-61651073 Msa0262620:CDS 40.0%
GGAGATGTGATGATAAGAAG+GGG + chr2_2:61651056-61651075 Msa0262620:CDS 40.0%
ATGTGATGATAAGAAGGGGT+TGG + chr2_2:61651060-61651079 Msa0262620:CDS 40.0%
! GAATGGTGTTAAGAATGGAC+TGG + chr2_2:61651084-61651103 Msa0262620:CDS 40.0%
!! TTAAGAATGGACTGGCTTCA+CGG + chr2_2:61651092-61651111 Msa0262620:CDS 40.0%
GGGATTAAAAGGAAGCTTGA+GGG + chr2_2:61651133-61651152 Msa0262620:CDS 40.0%
GATTGAAGAGAAACAACGGA+TGG + chr2_2:61651189-61651208 Msa0262620:CDS 40.0%
ATGTGTCTGTGGATCGTTAT+AGG + chr2_2:61651236-61651255 Msa0262620:CDS 40.0%
TGTGTCTGTGGATCGTTATA+GGG + chr2_2:61651237-61651256 Msa0262620:CDS 40.0%
!! TATAGGGTTGATAATGGGAG+TGG + chr2_2:61651253-61651272 Msa0262620:CDS 40.0%
! GTAAACCTATTAGCCTCTCT+CGG - chr2_2:61651319-61651338 None:intergenic 40.0%
TACACGCCAGTTAAGTGTAA+TGG + chr2_2:61651336-61651355 Msa0262620:CDS 40.0%
! ATGGTGTTAGAGAATGGTCA+TGG + chr2_2:61651355-61651374 Msa0262620:CDS 40.0%
GAGAAATGGGACATGGATTT+GGG + chr2_2:61651524-61651543 Msa0262620:CDS 40.0%
TTGGGTGTTTAATACTCCAG+TGG + chr2_2:61651612-61651631 Msa0262620:CDS 40.0%
CAAATCACCAAAGGAGTTTG+CGG + chr2_2:61651729-61651748 Msa0262620:CDS 40.0%
ACATGAACATCTTGCCCTTT+AGG - chr2_2:61651796-61651815 None:intergenic 40.0%
AGGGCAAGATGTTCATGTAA+TGG + chr2_2:61651798-61651817 Msa0262620:CDS 40.0%
GCAAGATGTTCATGTAATGG+CGG + chr2_2:61651801-61651820 Msa0262620:CDS 40.0%
CAGCATTATTCGAGGAAAGA+TGG + chr2_2:61651833-61651852 Msa0262620:CDS 40.0%
! ATGAGGTATGGCTTGGATTA+TGG + chr2_2:61651886-61651905 Msa0262620:CDS 40.0%
! TGAGGTATGGCTTGGATTAT+GGG + chr2_2:61651887-61651906 Msa0262620:CDS 40.0%
TTGACATGAGGAATCTGGAT+AGG + chr2_2:61651971-61651990 Msa0262620:CDS 40.0%
TTATCAGGATCGTTTGCCTT+CGG - chr2_2:61652069-61652088 None:intergenic 40.0%
!! TGAAGTGGACATTGATAGTG+TGG + chr2_2:61652221-61652240 Msa0262620:CDS 40.0%
CAACTATAACTGGTGGTTCT+TGG - chr2_2:61652465-61652484 None:intergenic 40.0%
AAACCTGCTTGTCTTTCTCT+CGG - chr2_2:61652493-61652512 None:intergenic 40.0%
TAGGTTATACAAGGTCAACC+TGG + chr2_2:61652759-61652778 Msa0262620:intron 40.0%
! GTTTGTGATTTTACCTTGGG+AGG - chr2_2:61652896-61652915 None:intergenic 40.0%
TACTGCTTACTATGCCAGTT+AGG + chr2_2:61653085-61653104 Msa0262620:intron 40.0%
TGAAGCACACATCATCATCA+TGG - chr2_2:61653657-61653676 None:intergenic 40.0%
TGTGCAACTTGTGTGTTTCA+AGG + chr2_2:61653853-61653872 Msa0262620:intron 40.0%
CAACACTCCATTTCTCACAA+GGG - chr2_2:61653905-61653924 None:intergenic 40.0%
AGAATTCAGGCTTCAAGGAA+AGG - chr2_2:61653944-61653963 None:intergenic 40.0%
GCATATCACTGGGTGTAATT+TGG - chr2_2:61653976-61653995 None:intergenic 40.0%
GTTGCTGGTATCTCAGAAAA+GGG - chr2_2:61654209-61654228 None:intergenic 40.0%
TCAATTGGTATCAAGGTTGC+TGG - chr2_2:61654224-61654243 None:intergenic 40.0%
CATAGCGTATTTAAGTGGGT+TGG - chr2_2:61654303-61654322 None:intergenic 40.0%
CAACCCACTTAAATACGCTA+TGG + chr2_2:61654301-61654320 Msa0262620:intron 40.0%
GCTCCATAGCGTATTTAAGT+GGG - chr2_2:61654307-61654326 None:intergenic 40.0%
TGCTCCATAGCGTATTTAAG+TGG - chr2_2:61654308-61654327 None:intergenic 40.0%
!! ATTCTGTTTAGTTTGGCTGC+TGG + chr2_2:61654348-61654367 Msa0262620:intron 40.0%
GTGAAACTAACTGTTTGCTC+AGG + chr2_2:61654373-61654392 Msa0262620:intron 40.0%
!! TGTTTGCTCAGGGTTTGTTA+GGG + chr2_2:61654384-61654403 Msa0262620:intron 40.0%
! TTATTTTCCGAGCCTCCAAA+AGG + chr2_2:61654714-61654733 Msa0262620:intron 40.0%
CCCTGTAAATATGTCTCAGT+AGG + chr2_2:61654759-61654778 Msa0262620:intron 40.0%
CCCTACTGAGACATATTTAC+AGG - chr2_2:61654763-61654782 None:intergenic 40.0%
TTGTTGGATCAAAACTGACC+CGG + chr2_2:61654853-61654872 Msa0262620:intron 40.0%
CTGAAATGCGGTTCATCATT+TGG - chr2_2:61654931-61654950 None:intergenic 40.0%
TGCAATGACAACCGCAAATA+CGG + chr2_2:61655241-61655260 Msa0262620:intron 40.0%
AAACGGTTCAGGCAAAAAAC+CGG + chr2_2:61655408-61655427 Msa0262620:intron 40.0%
! AACCGGTTCAGGTAAAAAAC+TGG + chr2_2:61655425-61655444 Msa0262620:intron 40.0%
! CTCTCTCTAGAAACGGTGTA+TGG - chr2_2:61650370-61650389 None:intergenic 45.0%
AGAGATACAGAGATACTCGG+AGG + chr2_2:61650712-61650731 Msa0262620:CDS 45.0%
GAGATACAGAGATACTCGGA+GGG + chr2_2:61650713-61650732 Msa0262620:CDS 45.0%
AGATACAGAGATACTCGGAG+GGG + chr2_2:61650714-61650733 Msa0262620:CDS 45.0%
GTAGCACCAGAATGAGTATG+AGG - chr2_2:61650803-61650822 None:intergenic 45.0%
! GTTGATGGGACGAAGGATAA+CGG + chr2_2:61650839-61650858 Msa0262620:CDS 45.0%
TTGATGGGACGAAGGATAAC+GGG + chr2_2:61650840-61650859 Msa0262620:CDS 45.0%
GCCAGTTGTGAATTCTAGGT+TGG + chr2_2:61650925-61650944 Msa0262620:CDS 45.0%
! TGTGAATTCTAGGTTGGACG+TGG + chr2_2:61650931-61650950 Msa0262620:CDS 45.0%
GATGTTGTTCAGCTGGAAGA+TGG + chr2_2:61651007-61651026 Msa0262620:CDS 45.0%
TCATCACATCTCCTCAAAGC+TGG - chr2_2:61651049-61651068 None:intergenic 45.0%
GATAAGAAGGGGTTGGAGAA+TGG + chr2_2:61651067-61651086 Msa0262620:CDS 45.0%
AAGAGATGCGGGGGATTAAA+AGG + chr2_2:61651122-61651141 Msa0262620:CDS 45.0%
GGGGATTAAAAGGAAGCTTG+AGG + chr2_2:61651132-61651151 Msa0262620:CDS 45.0%
AAGAGAAACAACGGATGGCT+GGG + chr2_2:61651194-61651213 Msa0262620:CDS 45.0%
TGGTGGTTTGAATGTGTCTG+TGG + chr2_2:61651225-61651244 Msa0262620:CDS 45.0%
GAAGGAGAAGAGAACACCTA+AGG + chr2_2:61651396-61651415 Msa0262620:CDS 45.0%
!! GAATAGAACTGGTTCGCCTT+AGG - chr2_2:61651415-61651434 None:intergenic 45.0%
CGCAAGCAAGAATTCCGAAT+TGG - chr2_2:61651437-61651456 None:intergenic 45.0%
TTCTTGTTACTCTCTGCAGG+CGG - chr2_2:61651472-61651491 None:intergenic 45.0%
GACTTCTTGTTACTCTCTGC+AGG - chr2_2:61651475-61651494 None:intergenic 45.0%
! AAGCATGGCGTTGGAGAAAT+GGG + chr2_2:61651511-61651530 Msa0262620:CDS 45.0%
GGAGAAATGGGACATGGATT+TGG + chr2_2:61651523-61651542 Msa0262620:CDS 45.0%
TGATGAAACACAAGCACGGT+TGG + chr2_2:61651593-61651612 Msa0262620:CDS 45.0%
GATGAAACACAAGCACGGTT+GGG + chr2_2:61651594-61651613 Msa0262620:CDS 45.0%
! ATCTCACATCCGATGGACTT+GGG + chr2_2:61651673-61651692 Msa0262620:CDS 45.0%
TTCACAGTACCCAAGTCCAT+CGG - chr2_2:61651685-61651704 None:intergenic 45.0%
AGATGTTCATGTAATGGCGG+AGG + chr2_2:61651804-61651823 Msa0262620:CDS 45.0%
GGAGCTATCAGCATTATTCG+AGG + chr2_2:61651825-61651844 Msa0262620:CDS 45.0%
TCATGAGATGAGGTATGGCT+TGG + chr2_2:61651879-61651898 Msa0262620:CDS 45.0%
! AGGTGAAGGTGCAGATATAG+CGG - chr2_2:61651914-61651933 None:intergenic 45.0%
GTCTTTCTAGACAGAGGTGA+AGG - chr2_2:61651928-61651947 None:intergenic 45.0%
CTAGAAAGACTCCTGCTTTG+CGG + chr2_2:61651938-61651957 Msa0262620:CDS 45.0%
AGATTCCTCATGTCAAGAGG+CGG - chr2_2:61651967-61651986 None:intergenic 45.0%
TCCAGATTCCTCATGTCAAG+AGG - chr2_2:61651970-61651989 None:intergenic 45.0%
TCAAGCTCAAGGGATTTGGA+GGG - chr2_2:61652014-61652033 None:intergenic 45.0%
!!! TCGTTTGCCTTCGGCTTTTT+TGG - chr2_2:61652060-61652079 None:intergenic 45.0%
TGTGGATGCAGAGACTCTTT+GGG + chr2_2:61652239-61652258 Msa0262620:CDS 45.0%
AACCTGCTTGTCTTTCTCTC+GGG - chr2_2:61652492-61652511 None:intergenic 45.0%
GAGAGAAAGACAAGCAGGTT+TGG + chr2_2:61652492-61652511 Msa0262620:intron 45.0%
!! GATTCTGGCTCTTCATCAAG+TGG + chr2_2:61652696-61652715 Msa0262620:CDS 45.0%
GTGAACCTAAATACCTCCCA+AGG + chr2_2:61652880-61652899 Msa0262620:exon 45.0%
! AGCGCAGCTTTGTCAGAATT+AGG + chr2_2:61653247-61653266 Msa0262620:intron 45.0%
ATTCAGCTACGAGGGAATGA+AGG - chr2_2:61653586-61653605 None:intergenic 45.0%
ATTCACCAGGAAGCAACACT+TGG + chr2_2:61653789-61653808 Msa0262620:intron 45.0%
CCAACACTCCATTTCTCACA+AGG - chr2_2:61653906-61653925 None:intergenic 45.0%
CCTTGTGAGAAATGGAGTGT+TGG + chr2_2:61653903-61653922 Msa0262620:intron 45.0%
!! TCAGTGGAGTATTGAGGAAC+AGG - chr2_2:61654046-61654065 None:intergenic 45.0%
TCTGGAAGGGATCATTGGAA+AGG - chr2_2:61654186-61654205 None:intergenic 45.0%
TCTCAGAAAAGGGTCTGGAA+GGG - chr2_2:61654199-61654218 None:intergenic 45.0%
ATCTCAGAAAAGGGTCTGGA+AGG - chr2_2:61654200-61654219 None:intergenic 45.0%
TGGTATCTCAGAAAAGGGTC+TGG - chr2_2:61654204-61654223 None:intergenic 45.0%
GGTTGCTGGTATCTCAGAAA+AGG - chr2_2:61654210-61654229 None:intergenic 45.0%
! CTGTTTGCTCAGGGTTTGTT+AGG + chr2_2:61654383-61654402 Msa0262620:intron 45.0%
!! TGTATCACCTTTTGGAGGCT+CGG - chr2_2:61654724-61654743 None:intergenic 45.0%
CCAGACCAGTTCATGATTTC+TGG - chr2_2:61654799-61654818 None:intergenic 45.0%
CCAGAAATCATGAACTGGTC+TGG + chr2_2:61654796-61654815 Msa0262620:intron 45.0%
GCGGTTCATCATTTGGGTAT+TGG - chr2_2:61654924-61654943 None:intergenic 45.0%
GTAAACAGAAACGACTGCGA+CGG + chr2_2:61655134-61655153 Msa0262620:intron 45.0%
ACGAAGTCGTTGATGTGTTG+CGG - chr2_2:61655163-61655182 None:intergenic 45.0%
GACTTCGTCAACAGAAACGA+CGG + chr2_2:61655175-61655194 Msa0262620:intron 45.0%
TATGTGAAAAAACCCGGTCC+AGG + chr2_2:61655381-61655400 Msa0262620:intron 45.0%
AACCCGGTCCAGGTAAAAAA+CGG + chr2_2:61655391-61655410 Msa0262620:intron 45.0%
!!! AACCGTTTTTTACCTGGACC+GGG - chr2_2:61655396-61655415 None:intergenic 45.0%
!!! GAACCGTTTTTTACCTGGAC+CGG - chr2_2:61655397-61655416 None:intergenic 45.0%
GTCCAGGTAAAAAACGGTTC+AGG + chr2_2:61655397-61655416 Msa0262620:intron 45.0%
!!! TGCCTGAACCGTTTTTTACC+TGG - chr2_2:61655402-61655421 None:intergenic 45.0%
! TTCAGGCAAAAAACCGGTTC+AGG + chr2_2:61655414-61655433 Msa0262620:intron 45.0%
! AGACATAGGGGTGTGCAAAT+GGG - chr2_2:61655587-61655606 None:intergenic 45.0%
AGTGCGTGCTTTCGCAAATA+AGG - chr2_2:61656081-61656100 None:intergenic 45.0%
GAAACGGTGTATGGTCTCTG+TGG - chr2_2:61650361-61650380 None:intergenic 50.0%
CTCTCTCTCTCTCTCTCTTC+TGG - chr2_2:61650411-61650430 None:intergenic 50.0%
GGGGACTGTAGCTGAAGATA+AGG + chr2_2:61650682-61650701 Msa0262620:CDS 50.0%
CTTCGTCCCATCAACAGTGA+CGG - chr2_2:61650834-61650853 None:intergenic 50.0%
!!! GGATAGTGTTTTGGTTCCGG+AGG + chr2_2:61650886-61650905 Msa0262620:CDS 50.0%
!!! AGTGTTTTGGTTCCGGAGGA+TGG + chr2_2:61650890-61650909 Msa0262620:CDS 50.0%
!!! GTGTTTTGGTTCCGGAGGAT+GGG + chr2_2:61650891-61650910 Msa0262620:CDS 50.0%
CTCCGCCAGTTGTGAATTCT+AGG + chr2_2:61650921-61650940 Msa0262620:CDS 50.0%
GTCGAGTTTGAATCGTAGGC+AGG + chr2_2:61650967-61650986 Msa0262620:CDS 50.0%
GAAGAGAAACAACGGATGGC+TGG + chr2_2:61651193-61651212 Msa0262620:CDS 50.0%
GTGTTCCGAGAGAGGCTAAT+AGG + chr2_2:61651311-61651330 Msa0262620:CDS 50.0%
! CATGGAAAGAAGCATGGCGT+TGG + chr2_2:61651502-61651521 Msa0262620:CDS 50.0%
! GAAGCATGGCGTTGGAGAAA+TGG + chr2_2:61651510-61651529 Msa0262620:CDS 50.0%
CCAAGACGTTCAACATCCAC+TGG - chr2_2:61651631-61651650 None:intergenic 50.0%
CCAGTGGATGTTGAACGTCT+TGG + chr2_2:61651628-61651647 Msa0262620:CDS 50.0%
! CATCTCACATCCGATGGACT+TGG + chr2_2:61651672-61651691 Msa0262620:CDS 50.0%
! ACTTGGGTACTGTGAAGTCG+AGG + chr2_2:61651689-61651708 Msa0262620:CDS 50.0%
AGTCGAGGCTCAGCAAGAAT+TGG + chr2_2:61651704-61651723 Msa0262620:CDS 50.0%
ATCACCAAAGGAGTTTGCGG+AGG + chr2_2:61651732-61651751 Msa0262620:CDS 50.0%
ACATCCTCCGCAAACTCCTT+TGG - chr2_2:61651739-61651758 None:intergenic 50.0%
! GGTGAAGGTGCAGATATAGC+GGG - chr2_2:61651913-61651932 None:intergenic 50.0%
GCAGGAGTCTTTCTAGACAG+AGG - chr2_2:61651934-61651953 None:intergenic 50.0%
GCCTCTTGACATGAGGAATC+TGG + chr2_2:61651966-61651985 Msa0262620:CDS 50.0%
GTCAAGCTCAAGGGATTTGG+AGG - chr2_2:61652015-61652034 None:intergenic 50.0%
CGAGTCAAGCTCAAGGGATT+TGG - chr2_2:61652018-61652037 None:intergenic 50.0%
GCTGAACGAGTCAAGCTCAA+GGG - chr2_2:61652024-61652043 None:intergenic 50.0%
AGCTGAACGAGTCAAGCTCA+AGG - chr2_2:61652025-61652044 None:intergenic 50.0%
TCCTGCTCCAAAAAAGCCGA+AGG + chr2_2:61652050-61652069 Msa0262620:CDS 50.0%
GTGTGGATGCAGAGACTCTT+TGG + chr2_2:61652238-61652257 Msa0262620:CDS 50.0%
! GGGGCATCAACTATAACTGG+TGG - chr2_2:61652472-61652491 None:intergenic 50.0%
! CTCGGGGCATCAACTATAAC+TGG - chr2_2:61652475-61652494 None:intergenic 50.0%
ACCTGCTTGTCTTTCTCTCG+GGG - chr2_2:61652491-61652510 None:intergenic 50.0%
ACTCGAATTTCCCCTTGCAC+GGG - chr2_2:61652630-61652649 None:intergenic 50.0%
GACTCGAATTTCCCCTTGCA+CGG - chr2_2:61652631-61652650 None:intergenic 50.0%
AGCAGCTCAAGCAGTGATTC+TGG + chr2_2:61652681-61652700 Msa0262620:CDS 50.0%
AGTGATAGCTCCTCATCGTC+TGG + chr2_2:61652839-61652858 Msa0262620:CDS 50.0%
GTGATAGCTCCTCATCGTCT+GGG + chr2_2:61652840-61652859 Msa0262620:CDS 50.0%
TGAATCAGACCCAGACGATG+AGG - chr2_2:61652852-61652871 None:intergenic 50.0%
TCATCGTCTGGGTCTGATTC+AGG + chr2_2:61652851-61652870 Msa0262620:CDS 50.0%
CATCGTCTGGGTCTGATTCA+GGG + chr2_2:61652852-61652871 Msa0262620:CDS 50.0%
AAATAGAGCTTCTGGGTGGG+AGG + chr2_2:61653717-61653736 Msa0262620:intron 50.0%
AATAGAGCTTCTGGGTGGGA+GGG + chr2_2:61653718-61653737 Msa0262620:intron 50.0%
AGAGTGTGAGTGAGCGAAGT+GGG + chr2_2:61653751-61653770 Msa0262620:intron 50.0%
! ACTTACCAGCCGTTGCTTTC+CGG - chr2_2:61653818-61653837 None:intergenic 50.0%
AACGGCTGGTAAGTGGTGAA+AGG + chr2_2:61653824-61653843 Msa0262620:intron 50.0%
CTGGTAAGTGGTGAAAGGCT+GGG + chr2_2:61653829-61653848 Msa0262620:intron 50.0%
GATGCTGCCCTTGTGAGAAA+TGG + chr2_2:61653895-61653914 Msa0262620:intron 50.0%
!! GGTTGCTCAGTGGAGTATTG+AGG - chr2_2:61654052-61654071 None:intergenic 50.0%
!! GGAGGTGCTATGATAGACTC+GGG - chr2_2:61654115-61654134 None:intergenic 50.0%
!! GGGAGGTGCTATGATAGACT+CGG - chr2_2:61654116-61654135 None:intergenic 50.0%
AAGGGTCTGGAAGGGATCAT+TGG - chr2_2:61654191-61654210 None:intergenic 50.0%
TTCTGTTGACGAAGCCGTTG+CGG - chr2_2:61655210-61655229 None:intergenic 50.0%
CTGGTTCAGGTAGCATGAAC+CGG + chr2_2:61655444-61655463 Msa0262620:intron 50.0%
! GAGACATAGGGGTGTGCAAA+TGG - chr2_2:61655588-61655607 None:intergenic 50.0%
GTGAAACGGCACGCGTTTGA+GGG - chr2_2:61650334-61650353 None:intergenic 55.0%
GTCTCTGTGGAGCGGTGAAA+CGG - chr2_2:61650348-61650367 None:intergenic 55.0%
GGTGTATGGTCTCTGTGGAG+CGG - chr2_2:61650356-61650375 None:intergenic 55.0%
! CGTCACTGTTGATGGGACGA+AGG + chr2_2:61650832-61650851 Msa0262620:CDS 55.0%
GGTTCCGGAGGATGGGAATT+CGG + chr2_2:61650898-61650917 Msa0262620:CDS 55.0%
CACGGTCGAAGCAAGAGATG+CGG + chr2_2:61651110-61651129 Msa0262620:CDS 55.0%
ACGGTCGAAGCAAGAGATGC+GGG + chr2_2:61651111-61651130 Msa0262620:CDS 55.0%
GCTTGAGGGCGACCTTGAAA+CGG + chr2_2:61651147-61651166 Msa0262620:CDS 55.0%
CCAACGACCTCACCGTTTCA+AGG - chr2_2:61651162-61651181 None:intergenic 55.0%
CCTTGAAACGGTGAGGTCGT+TGG + chr2_2:61651159-61651178 Msa0262620:CDS 55.0%
!! CGGTGAGGTCGTTGGTGATT+AGG + chr2_2:61651167-61651186 Msa0262620:CDS 55.0%
AGAAACAACGGATGGCTGGG+AGG + chr2_2:61651197-61651216 Msa0262620:CDS 55.0%
AGCTAAGCACGCTCACTCTG+AGG + chr2_2:61651276-61651295 Msa0262620:CDS 55.0%
!! CACTCTGAGGTAGCTTCTGC+AGG + chr2_2:61651289-61651308 Msa0262620:CDS 55.0%
TTCTGCAGGTGTTCCGAGAG+AGG + chr2_2:61651303-61651322 Msa0262620:CDS 55.0%
! GGCGTTGGAGAAATGGGACA+TGG + chr2_2:61651517-61651536 Msa0262620:CDS 55.0%
TTCCTCATGTCAAGAGGCGG+TGG - chr2_2:61651964-61651983 None:intergenic 55.0%
GCTCAAGGGATTTGGAGGGT+TGG - chr2_2:61652010-61652029 None:intergenic 55.0%
!!! GCCTTCGGCTTTTTTGGAGC+AGG - chr2_2:61652054-61652073 None:intergenic 55.0%
CTTCTGCTGGGCAATTCGCT+CGG - chr2_2:61652352-61652371 None:intergenic 55.0%
!! CTGGTGGTTCTTGGCTCTAC+AGG - chr2_2:61652456-61652475 None:intergenic 55.0%
CAAGCAGGTTTGGCCTCTTG+TGG + chr2_2:61652502-61652521 Msa0262620:intron 55.0%
AATTTCCCCTTGCACGGGCA+AGG - chr2_2:61652625-61652644 None:intergenic 55.0%
! GAGAGTGTGAGTGAGCGAAG+TGG + chr2_2:61653750-61653769 Msa0262620:intron 55.0%
! GAGAGTGGAGTGGATTCACC+AGG + chr2_2:61653776-61653795 Msa0262620:intron 55.0%
CACCAGGAAGCAACACTTGG+AGG + chr2_2:61653792-61653811 Msa0262620:intron 55.0%
AGGAAGCAACACTTGGAGGC+CGG + chr2_2:61653796-61653815 Msa0262620:intron 55.0%
ACTTGGAGGCCGGAAAGCAA+CGG + chr2_2:61653806-61653825 Msa0262620:intron 55.0%
GGAAAGCAACGGCTGGTAAG+TGG + chr2_2:61653817-61653836 Msa0262620:intron 55.0%
GCTGGTAAGTGGTGAAAGGC+TGG + chr2_2:61653828-61653847 Msa0262620:intron 55.0%
TGTTTCAAGGACTGCCTCCG+TGG + chr2_2:61653866-61653885 Msa0262620:intron 55.0%
AGGCAGGACGTCATCTCGTA+GGG - chr2_2:61654137-61654156 None:intergenic 55.0%
GTCAACAGAAACGACGGCGA+CGG + chr2_2:61655181-61655200 Msa0262620:intron 55.0%
CACCGACGACGGAAAACTCA+CGG + chr2_2:61655264-61655283 Msa0262620:intron 55.0%
GGTGAAACGGCACGCGTTTG+AGG - chr2_2:61650335-61650354 None:intergenic 60.0%
! ATCAACAGTGACGGTGGCGG+TGG - chr2_2:61650825-61650844 None:intergenic 60.0%
ACCGCCACCGTCACTGTTGA+TGG + chr2_2:61650824-61650843 Msa0262620:CDS 60.0%
CCCATCAACAGTGACGGTGG+CGG - chr2_2:61650828-61650847 None:intergenic 60.0%
CCGCCACCGTCACTGTTGAT+GGG + chr2_2:61650825-61650844 Msa0262620:CDS 60.0%
CGTCCCATCAACAGTGACGG+TGG - chr2_2:61650831-61650850 None:intergenic 60.0%
GGAGCCGAATTCCCATCCTC+CGG - chr2_2:61650905-61650924 None:intergenic 60.0%
CGGTCGAAGCAAGAGATGCG+GGG + chr2_2:61651112-61651131 Msa0262620:CDS 60.0%
GGTCGAAGCAAGAGATGCGG+GGG + chr2_2:61651113-61651132 Msa0262620:CDS 60.0%
AGGGCGACCTTGAAACGGTG+AGG + chr2_2:61651152-61651171 Msa0262620:CDS 60.0%
CAACGGATGGCTGGGAGGTA+TGG + chr2_2:61651202-61651221 Msa0262620:CDS 60.0%
! ATGGCTGGGAGGTATGGTGG+TGG + chr2_2:61651208-61651227 Msa0262620:CDS 60.0%
CGAGCGAATTGCCCAGCAGA+AGG + chr2_2:61652350-61652369 Msa0262620:CDS 60.0%
GCCCCGAGAGAAAGACAAGC+AGG + chr2_2:61652487-61652506 Msa0262620:CDS 60.0%
TGAGCGAAGTGGGCAGAGAG+TGG + chr2_2:61653761-61653780 Msa0262620:intron 60.0%
GAAGTGGGCAGAGAGTGGAG+TGG + chr2_2:61653766-61653785 Msa0262620:intron 60.0%
!! GGCCTCCAAGTGTTGCTTCC+TGG - chr2_2:61653797-61653816 None:intergenic 60.0%
TTCAAGGACTGCCTCCGTGG+AGG + chr2_2:61653869-61653888 Msa0262620:intron 60.0%
AGGGCAGCATCCTTCCTCCA+CGG - chr2_2:61653886-61653905 None:intergenic 60.0%
AGGACGTCATCTCGTAGGGG+AGG - chr2_2:61654133-61654152 None:intergenic 60.0%
GGCAGGACGTCATCTCGTAG+GGG - chr2_2:61654136-61654155 None:intergenic 60.0%
CAGGCAGGACGTCATCTCGT+AGG - chr2_2:61654138-61654157 None:intergenic 60.0%
ACAAAGCCGTTGCTGCGTCG+CGG - chr2_2:61655116-61655135 None:intergenic 60.0%
!! CGTCGTCGGTGCCGTATTTG+CGG - chr2_2:61655255-61655274 None:intergenic 60.0%
!! CGCAAATACGGCACCGACGA+CGG + chr2_2:61655253-61655272 Msa0262620:intron 60.0%
! CGCCGTGAGTTTTCCGTCGT+CGG - chr2_2:61655269-61655288 None:intergenic 60.0%
! CGGATGGCTGGGAGGTATGG+TGG + chr2_2:61651205-61651224 Msa0262620:CDS 65.0%
GGCCACCGCCTCTTGACATG+AGG + chr2_2:61651959-61651978 Msa0262620:CDS 65.0%
CCTTGCACGGGCAAGGATGG+GGG - chr2_2:61652618-61652637 None:intergenic 65.0%
CCCTTGCACGGGCAAGGATG+GGG - chr2_2:61652619-61652638 None:intergenic 65.0%
CCCCATCCTTGCCCGTGCAA+GGG + chr2_2:61652616-61652635 Msa0262620:CDS 65.0%
CCCCTTGCACGGGCAAGGAT+GGG - chr2_2:61652620-61652639 None:intergenic 65.0%
CCCATCCTTGCCCGTGCAAG+GGG + chr2_2:61652617-61652636 Msa0262620:CDS 65.0%
TCCCCTTGCACGGGCAAGGA+TGG - chr2_2:61652621-61652640 None:intergenic 65.0%
AGCTTCTGGGTGGGAGGGAC+AGG + chr2_2:61653723-61653742 Msa0262620:intron 65.0%
GCTTCTGGGTGGGAGGGACA+GGG + chr2_2:61653724-61653743 Msa0262620:intron 65.0%
AGGACTGCCTCCGTGGAGGA+AGG + chr2_2:61653873-61653892 Msa0262620:intron 65.0%
GCAGCATCCTTCCTCCACGG+AGG - chr2_2:61653883-61653902 None:intergenic 65.0%
CAGCAACCGCGACGCAGCAA+CGG + chr2_2:61655107-61655126 Msa0262620:intron 65.0%
AGAGGCGGTGGCCGCAAAGC+AGG - chr2_2:61651952-61651971 None:intergenic 70.0%
CCCCCATCCTTGCCCGTGCA+AGG + chr2_2:61652615-61652634 Msa0262620:CDS 70.0%
GGAGGCCGGAAAGCAACGGC+TGG + chr2_2:61653810-61653829 Msa0262620:intron 70.0%
GACGGCGACGGCAACCGCAA+CGG + chr2_2:61655193-61655212 Msa0262620:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 61650330 61656303 61650330 ID=Msa0262620;Name=Msa0262620
chr2_2 mRNA 61650330 61656303 61650330 ID=Msa0262620-mRNA-1;Parent=Msa0262620;Name=Msa0262620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=206|1|1|1|0.6|0.33|6|470|638
chr2_2 exon 61650330 61650460 61650330 ID=Msa0262620-mRNA-1:exon:18958;Parent=Msa0262620-mRNA-1
chr2_2 exon 61650599 61652371 61650599 ID=Msa0262620-mRNA-1:exon:18959;Parent=Msa0262620-mRNA-1
chr2_2 exon 61652460 61652508 61652460 ID=Msa0262620-mRNA-1:exon:18960;Parent=Msa0262620-mRNA-1
chr2_2 exon 61652601 61652717 61652601 ID=Msa0262620-mRNA-1:exon:18961;Parent=Msa0262620-mRNA-1
chr2_2 exon 61652831 61653102 61652831 ID=Msa0262620-mRNA-1:exon:18962;Parent=Msa0262620-mRNA-1
chr2_2 exon 61656053 61656303 61656053 ID=Msa0262620-mRNA-1:exon:18963;Parent=Msa0262620-mRNA-1
chr2_2 five_prime_UTR 61650330 61650460 61650330 ID=Msa0262620-mRNA-1:five_prime_utr;Parent=Msa0262620-mRNA-1
chr2_2 five_prime_UTR 61650599 61650673 61650599 ID=Msa0262620-mRNA-1:five_prime_utr;Parent=Msa0262620-mRNA-1
chr2_2 CDS 61650674 61652371 61650674 ID=Msa0262620-mRNA-1:cds;Parent=Msa0262620-mRNA-1
chr2_2 CDS 61652460 61652508 61652460 ID=Msa0262620-mRNA-1:cds;Parent=Msa0262620-mRNA-1
chr2_2 CDS 61652601 61652717 61652601 ID=Msa0262620-mRNA-1:cds;Parent=Msa0262620-mRNA-1
chr2_2 CDS 61652831 61652883 61652831 ID=Msa0262620-mRNA-1:cds;Parent=Msa0262620-mRNA-1
chr2_2 three_prime_UTR 61652884 61653102 61652884 ID=Msa0262620-mRNA-1:three_prime_utr;Parent=Msa0262620-mRNA-1
chr2_2 three_prime_UTR 61656053 61656303 61656053 ID=Msa0262620-mRNA-1:three_prime_utr;Parent=Msa0262620-mRNA-1
Gene Sequence

>Msa0262620

ATGGATTCGGGGACTGTAGCTGAAGATAAGGTAGTTAGAGAGATACAGAGATACTCGGAGGGGAAAGTATACACGAGAAAAAATTTCAAAGTTTCAGAGGATAACGTTAATTCCTTGGAAGTTGTTCCTCATACTCATTCTGGTGCTACCACCGCCACCGTCACTGTTGATGGGACGAAGGATAACGGGAATAATGTTTCGGTTCAACAGTTGGATAGTGTTTTGGTTCCGGAGGATGGGAATTCGGCTCCGCCAGTTGTGAATTCTAGGTTGGACGTGGTTTCTGAAGATTCGTCGAGTTTGAATCGTAGGCAGGATGAACATTTTAGTCTTGATGTTGTTCAGCTGGAAGATGGTAATGATTTGTTAGAACCAGCTTTGAGGAGATGTGATGATAAGAAGGGGTTGGAGAATGGTGTTAAGAATGGACTGGCTTCACGGTCGAAGCAAGAGATGCGGGGGATTAAAAGGAAGCTTGAGGGCGACCTTGAAACGGTGAGGTCGTTGGTGATTAGGATTGAAGAGAAACAACGGATGGCTGGGAGGTATGGTGGTGGTTTGAATGTGTCTGTGGATCGTTATAGGGTTGATAATGGGAGTGGAGCTAAGCACGCTCACTCTGAGGTAGCTTCTGCAGGTGTTCCGAGAGAGGCTAATAGGTTTACACGCCAGTTAAGTGTAATGGTGTTAGAGAATGGTCATGGAATTAGTGAAGGTGTTGAGAAGGAGAAGAGAACACCTAAGGCGAACCAGTTCTATTCCAATTCGGAATTCTTGCTTGCGAAAGATAAGTTTCCGCCTGCAGAGAGTAACAAGAAGTCAAAATCACATGGAAAGAAGCATGGCGTTGGAGAAATGGGACATGGATTTGGGATAGTATCGAAGTATTTGAAGAACTGTAGCTCATTGCTTGAAAAGTTGATGAAACACAAGCACGGTTGGGTGTTTAATACTCCAGTGGATGTTGAACGTCTTGGTTTGCATGATTATTTTATTATCATCTCACATCCGATGGACTTGGGTACTGTGAAGTCGAGGCTCAGCAAGAATTGGTACAAATCACCAAAGGAGTTTGCGGAGGATGTGAGACTTACTTTTCGTAACGCCATGACATATAATCCTAAAGGGCAAGATGTTCATGTAATGGCGGAGGAGCTATCAGCATTATTCGAGGAAAGATGGGCCATTATAGAGTCAAATTACAATCATGAGATGAGGTATGGCTTGGATTATGGGCCCGCTATATCTGCACCTTCACCTCTGTCTAGAAAGACTCCTGCTTTGCGGCCACCGCCTCTTGACATGAGGAATCTGGATAGGTCAGAATCAATAACCAACCCTCCAAATCCCTTGAGCTTGACTCGTTCAGCTCGAACTCCTGCTCCAAAAAAGCCGAAGGCAAACGATCCTGATAAAAGAGACATGACATACGATGAAAAGCAAAAACTTAGCACACATCTTCAGAATCTACCACCTGAAAAACTAGATGCTATTGTACAGATCATTAAGAAACGAAATTCGGCACTTTCCCAACATGATGATGAAATTGAAGTGGACATTGATAGTGTGGATGCAGAGACTCTTTGGGAGCTTGATAGATATGTTACCAACTATAAGAAAAGTTTGAGCAAATACAAGAGGAAGGCCGAACTTGCTATTCAAGCTAGAGCAGAAGCCGAGCGAATTGCCCAGCAGAAGAGCCAAGAACCACCAGTTATAGTTGATGCCCCGAGAGAAAGACAAGCAGATGAAAGAAATGCTCCCCCATCCTTGCCCGTGCAAGGGGAAATTCGAGTCGATAATAATGGGAGTAAGACAAGTAGCTCAAGCAGCTCAAGCAGTGATTCTGGCTCTTCATCAAGTGATTCTGATAGTGATAGCTCCTCATCGTCTGGGTCTGATTCAGGGTCACAGTGA
Protein sequence

>Msa0262620

MDSGTVAEDKVVREIQRYSEGKVYTRKNFKVSEDNVNSLEVVPHTHSGATTATVTVDGTKDNGNNVSVQQLDSVLVPEDGNSAPPVVNSRLDVVSEDSSSLNRRQDEHFSLDVVQLEDGNDLLEPALRRCDDKKGLENGVKNGLASRSKQEMRGIKRKLEGDLETVRSLVIRIEEKQRMAGRYGGGLNVSVDRYRVDNGSGAKHAHSEVASAGVPREANRFTRQLSVMVLENGHGISEGVEKEKRTPKANQFYSNSEFLLAKDKFPPAESNKKSKSHGKKHGVGEMGHGFGIVSKYLKNCSSLLEKLMKHKHGWVFNTPVDVERLGLHDYFIIISHPMDLGTVKSRLSKNWYKSPKEFAEDVRLTFRNAMTYNPKGQDVHVMAEELSALFEERWAIIESNYNHEMRYGLDYGPAISAPSPLSRKTPALRPPPLDMRNLDRSESITNPPNPLSLTRSARTPAPKKPKANDPDKRDMTYDEKQKLSTHLQNLPPEKLDAIVQIIKKRNSALSQHDDEIEVDIDSVDAETLWELDRYVTNYKKSLSKYKRKAELAIQARAEAERIAQQKSQEPPVIVDAPRERQADERNAPPSLPVQGEIRVDNNGSKTSSSSSSSSDSGSSSSDSDSDSSSSSGSDSGSQ*