AlfalfaGEDB | Msa0264770

M. sativa cultivar zhongmu-4 / Msa0264770

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264770	XP_024632563.1	96.226	742	27	1	1	742	1	741	0.0	1504

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264770	sp\|Q6NQJ7\|FRS4_ARATH	61.035	734	273	8	18	741	1	731	0.0	905

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264770	A0A396JDB2	96.226	742	27	1	1	742	1	741	0.0	1504

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TFs/TRs:

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Gene ID	Type	Classification
Msa0264770	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0264770	Msa0302810	0.900333	8.137715e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264770	MtrunA17_Chr2g0329031	96.226	742	27	1	1	742	1	741	0.0	1504
Msa0264770	MtrunA17_Chr1g0207551	50.525	667	307	7	8	659	28	686	0.0	661
Msa0264770	MtrunA17_Chr3g0080351	47.432	662	310	5	1	641	63	707	0.0	628
Msa0264770	MtrunA17_Chr5g0448761	37.366	653	369	14	13	631	59	705	2.38e-137	424
Msa0264770	MtrunA17_Chr2g0291581	34.742	639	366	11	14	623	71	687	1.16e-118	372
Msa0264770	MtrunA17_Chr1g0202341	34.080	625	379	10	13	612	50	666	1.51e-117	369
Msa0264770	MtrunA17_Chr2g0296781	35.097	567	344	9	18	566	1	561	5.78e-114	361
Msa0264770	MtrunA17_Chr5g0440451	33.588	655	382	11	11	630	40	676	1.69e-110	357
Msa0264770	MtrunA17_Chr5g0441581	34.142	618	376	12	14	614	32	635	9.67e-110	348
Msa0264770	MtrunA17_Chr3g0118611	38.852	453	270	4	178	625	118	568	1.26e-103	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0264770	AT1G76320.1	61.035	734	273	8	18	741	1	731	905
Msa0264770	AT1G76320.4	61.035	734	273	8	18	741	1	731	905
Msa0264770	AT1G76320.2	61.119	733	272	8	18	741	1	729	905
Msa0264770	AT1G76320.3	63.881	670	234	4	18	680	1	669	888
Msa0264770	AT4G15090.1	51.752	628	282	6	13	624	50	672	671
Msa0264770	AT4G15090.5	51.752	628	282	6	13	624	50	672	671
Msa0264770	AT4G15090.3	51.752	628	282	6	13	624	50	672	671
Msa0264770	AT4G15090.2	51.752	628	282	6	13	624	50	672	671
Msa0264770	AT4G15090.4	51.752	628	282	6	13	624	50	672	671
Msa0264770	AT3G22170.2	47.764	626	293	5	13	621	69	677	619

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Find 162 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGGTTTGTAGCAATG+GGG	0.692875	2_2:-64778037	Msa0264770:CDS
AAAGAGTATGCAAAATCAGC+AGG	0.457157	2_2:-64778776	Msa0264770:CDS
AAAGTTTCAGTTCGAGGTTT+TGG	0.254700	2_2:-64777454	Msa0264770:CDS
AACATGGTTTGTAGCAATGG+GGG	0.637044	2_2:-64778036	Msa0264770:CDS
AACCATACTATTGCAAGGAT+AGG	0.572947	2_2:-64774633	Msa0264770:three_prime_UTR
AACCTATCCTTGCAATAGTA+TGG	0.353067	2_2:+64774631	None:intergenic
AACTCCCCGGAAAACATCAC+CGG	0.571503	2_2:-64779050	Msa0264770:five_prime_UTR
AAGAATTCGACTGCAGGTGG+TGG	0.578130	2_2:-64778452	Msa0264770:CDS
AAGAGGTTCAATCCAAGGTC+CGG	0.533736	2_2:-64777155	Msa0264770:CDS
AAGAGTATGCAAAATCAGCA+GGG	0.632144	2_2:-64778775	Msa0264770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAAAAGTAAATACCTGGA+TGG	+	chr2_2:64774689-64774708	None:intergenic	30.0%
AAGTCATTATTCCTCCATTT+AGG	-	chr2_2:64774790-64774809	Msa0264770:exon	30.0%
AATCCATAATTGCACCTAAA+TGG	+	chr2_2:64774807-64774826	None:intergenic	30.0%
TCAAGACCCTAATAATGAAA+TGG	-	chr2_2:64774852-64774871	Msa0264770:CDS	30.0%
ATGAATCGTCAACAAGATAA+AGG	-	chr2_2:64775303-64775322	Msa0264770:intron	30.0%
TGAATCGTCAACAAGATAAA+GGG	-	chr2_2:64775304-64775323	Msa0264770:intron	30.0%
TGAATTGTTTATGCATATGC+AGG	-	chr2_2:64775368-64775387	Msa0264770:intron	30.0%
ATGCTCTTCATTCAAATCAA+TGG	+	chr2_2:64775418-64775437	None:intergenic	30.0%
TATATATCAATCATGGACAG+AGG	-	chr2_2:64775851-64775870	Msa0264770:intron	30.0%
GAAATATCCTTCATAAACGT+TGG	+	chr2_2:64775975-64775994	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	64774539	64779169	64774539	ID=Msa0264770;Name=Msa0264770
chr2_2	mRNA	64774539	64779169	64774539	ID=Msa0264770-mRNA-1;Parent=Msa0264770;Name=Msa0264770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=163\|1\|1\|1\|0.66\|0.75\|4\|252\|742
chr2_2	exon	64774539	64774931	64774539	ID=Msa0264770-mRNA-1:exon:20274;Parent=Msa0264770-mRNA-1
chr2_2	exon	64776718	64776768	64776718	ID=Msa0264770-mRNA-1:exon:20273;Parent=Msa0264770-mRNA-1
chr2_2	exon	64776852	64778896	64776852	ID=Msa0264770-mRNA-1:exon:20272;Parent=Msa0264770-mRNA-1
chr2_2	exon	64779015	64779169	64779015	ID=Msa0264770-mRNA-1:exon:20271;Parent=Msa0264770-mRNA-1
chr2_2	five_prime_UTR	64779015	64779169	64779015	ID=Msa0264770-mRNA-1:five_prime_utr;Parent=Msa0264770-mRNA-1
chr2_2	five_prime_UTR	64778889	64778896	64778889	ID=Msa0264770-mRNA-1:five_prime_utr;Parent=Msa0264770-mRNA-1
chr2_2	CDS	64776852	64778888	64776852	ID=Msa0264770-mRNA-1:cds;Parent=Msa0264770-mRNA-1
chr2_2	CDS	64776718	64776768	64776718	ID=Msa0264770-mRNA-1:cds;Parent=Msa0264770-mRNA-1
chr2_2	CDS	64774791	64774931	64774791	ID=Msa0264770-mRNA-1:cds;Parent=Msa0264770-mRNA-1
chr2_2	three_prime_UTR	64774539	64774790	64774539	ID=Msa0264770-mRNA-1:three_prime_utr;Parent=Msa0264770-mRNA-1

Gene Sequence

>Msa0264770

ATGGATTCTTCTATTATTATGGCTAACACAATTCAAGACCCTAATAATGAAATGGAATTTGAATCACATGAAGCTGCATATTCATTTTACAAAGAGTATGCAAAATCAGCAGGGTTTGGTACTGCTAAGTTAAGTAGTCGCCGATCTAGGGCATCGAAAGAATTCATCGATGCGAAATTTTCATGTATTAGATATGGTAATAAACAACAATCGGATGACGCGATTAATCCGCGTCCTTCCCCGAAAATCGGTTGTAAAGCAAGTATGCATGTGAAGAGAAAACAGGATGGTAAATGGTATGTTTATAGTTTTGTTAAGGAGCATAATCACGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGGAGTCATAGGAATAATGATACATTGAGTAATGATGTTCGGATGAGACGGAGGAAGAATTCGACTGCAGGTGGTGGTAAGTTGTTTAGCGCGTATCAGAATATTGATTGTTTGGAGAATTTGATGAATCGTCAACAAGATAAAGGGCGGAGTTTGGTTTTAGAACCGGGGAATGCTCAATTGCTTCTTGAATTGTTTATGCATATGCAGGAAGAGAATCCGAAATTCTTTTATGCCATTGATTTGAATGAAGAGCATCGGCTTAGAAATGTGTTCTGGGTTGATTCTAAAGGGTTGGAGGATTTTGGTTATTTTTCTGATGTTGTTTCTTTTGACACAACGTATTTCACAAGCAAGTATAAGATACCGTTGGTGCTTTTTGTTGGAGTTAACCATCATGTTCAACCAACATTGCTTGGATGTGCATTGATAGCTGATGCGACTGTATTTACTTTTGTGTGGCTACTGCAAACATGGTTTGTAGCAATGGGGGAACGTGCTCCGCAGGTGATTCTAACTGACCAAAATGATGCTATTAAAGCTGCTGTCGCTGCTGTTTTTCCCGGAACACGTCATTGTTTTTGTTTGTGGCATGTTTTGGAAAAGATACCGAAACAGCTTGAGTTCTTAAGTACATGGCATGATAGCTTTATGGAAAAGTTCAACAAATGTATATATCAATCATGGACAGAGGAGCAATTTGAAAAGAGATGGTGGAAGCTGGTTGATAGGTTTAAACTTAGAGATGTTAAGTGGGTTCAAACCTTGTATGATGATCGTGCATGTTGGGTGCCAACGTTTATGAAGGATATTTCTTTGGCTGGCTTGTCTACCGGCTCGCGCTTTGAAAGTTTAAATTCTATTTTTGACAGATATATCCAAGTTGATACTTCATTAAGACAATTTATAGATCAGTACCAATTGATTCTTGAAGATAGAGATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGAATTAAAGTCACCTTCCCCTTTCGAAAAACAACTGCTGTTAGTTTATACTCATGAAATCTATCAAAAGTTTCAGTTCGAGGTTTTGGGTGCTTCTGCTTGCCATCTAAAGAAAGAAAATGATGGCGTGATTACTACTTATGATGTGAAAGACTTCGAAAATAATCAGAACTACATGGTAGAATGGAACACATCAAACTCGGATATATCCTGTTCCTGTCACTTGTTTGAATATAAAGGTTACCTATGTAGACATGCAATTGTTGTTCTACAAATGTCTGGTGTTTTTAGCATCCCGCCAAAGTATATATTGAAAAGATGGACAAACGTCGCTTTAAGTAGGTATCCTATTGGTGAAAACTTGGAAGAGGTTCAATCCAAGGTCCGGAGATTAAATGATTTATGTAGACGAGCCATAATATTGGGTGAAGAAGGTTCTTTATCCCAAGAAAGTTACTACATGGCTTTAGGTTCCTTAAGCGAGGCTCTAAAGCAATGTACAAATTTGAACAACTCTGTTGAGAATGCAGCCTTAGCTACCCATATTGGTTGCAATGTTGAAGAAGAGTATCAATCTATTATACCATCTAACGATAAGGTCTCTGATCCGAAAATGAATACGAGTAAGAAGGCTGCAAGGACTGGTGTAGCTGGTAGGAGTTCAGGAGGTGTTGAAGGAAGTAAGGGAAAGGTGCCTCAGCTTGGAGCAGTAAGTGGTAGTAACCATGGCTTTCAACAAATGGAGCATACTGATATAAGGTCACACAATGTCATGCCAGTGCAGTTTCACAGCATGGTGCCGGCGTCTATGTTCCATAATGATTCGTCCCCCTTTCACAGTGCAGCCTCAACTCATTTGCATGACAATCAACTTCCTCCTTAA

Protein sequence

>Msa0264770

MDSSIIMANTIQDPNNEMEFESHEAAYSFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRKQDGKWYVYSFVKEHNHELLPAQAHFFRSHRNNDTLSNDVRMRRRKNSTAGGGKLFSAYQNIDCLENLMNRQQDKGRSLVLEPGNAQLLLELFMHMQEENPKFFYAIDLNEEHRLRNVFWVDSKGLEDFGYFSDVVSFDTTYFTSKYKIPLVLFVGVNHHVQPTLLGCALIADATVFTFVWLLQTWFVAMGERAPQVILTDQNDAIKAAVAAVFPGTRHCFCLWHVLEKIPKQLEFLSTWHDSFMEKFNKCIYQSWTEEQFEKRWWKLVDRFKLRDVKWVQTLYDDRACWVPTFMKDISLAGLSTGSRFESLNSIFDRYIQVDTSLRQFIDQYQLILEDRDEEEAKANFDAWHETPELKSPSPFEKQLLLVYTHEIYQKFQFEVLGASACHLKKENDGVITTYDVKDFENNQNYMVEWNTSNSDISCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNVALSRYPIGENLEEVQSKVRRLNDLCRRAIILGEEGSLSQESYYMALGSLSEALKQCTNLNNSVENAALATHIGCNVEEEYQSIIPSNDKVSDPKMNTSKKAARTGVAGRSSGGVEGSKGKVPQLGAVSGSNHGFQQMEHTDIRSHNVMPVQFHSMVPASMFHNDSSPFHSAASTHLHDNQLPP*