Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271830 | XP_024633138.1 | 94.574 | 129 | 6 | 1 | 1 | 129 | 1 | 128 | 4.46e-80 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271830 | G7IR18 | 94.574 | 129 | 6 | 1 | 1 | 129 | 1 | 128 | 5.30e-80 | 241 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0271830 | Msa0332360 | 0.839146 | 1.885990e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271830 | MtrunA17_Chr2g0315301 | 94.574 | 129 | 6 | 1 | 1 | 129 | 1 | 128 | 1.02e-83 | 241 |
| Msa0271830 | MtrunA17_Chr2g0315311 | 60.000 | 140 | 22 | 2 | 1 | 129 | 1 | 117 | 7.26e-37 | 122 |
| Msa0271830 | MtrunA17_Chr2g0315321 | 53.488 | 129 | 30 | 4 | 1 | 129 | 1 | 99 | 2.57e-27 | 98.2 |
| Msa0271830 | MtrunA17_Chr2g0315291 | 55.385 | 130 | 28 | 3 | 1 | 129 | 1 | 101 | 1.92e-25 | 93.6 |
| Msa0271830 | MtrunA17_Chr2g0315331 | 46.032 | 126 | 20 | 2 | 1 | 126 | 1 | 78 | 3.87e-23 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCCGTTGGTTCACCTAT+TGG | 0.280966 | 2_3:+3343256 | None:intergenic |
| CCTCCTCCTGGTCTAACTAT+TGG | 0.312494 | 2_3:+3343316 | None:intergenic |
| GGGTGGGCAGCACTGGCATG+TGG | 0.333889 | 2_3:+3344645 | None:intergenic |
| TAGCACAGGAAGCGAAGGTT+TGG | 0.359713 | 2_3:-3343164 | Msa0271830:CDS |
| GTTAGACCAGGAGGAGGATT+GGG | 0.360690 | 2_3:-3343310 | Msa0271830:CDS |
| AGCACAGGAAGCGAAGGTTT+GGG | 0.387244 | 2_3:-3343163 | Msa0271830:CDS |
| ACGATCAATCGACGACCAAT+AGG | 0.406349 | 2_3:-3343271 | Msa0271830:CDS |
| AGCTGAGGATTCTCCATTTG+CGG | 0.436685 | 2_3:+3343133 | None:intergenic |
| TAGCACAGGAAGCGAAGGTT+TGG | 0.442530 | 2_3:-3343236 | Msa0271830:CDS |
| TACCCATTGGTTCACCATCA+TGG | 0.447609 | 2_3:+3343185 | None:intergenic |
| TTTCAAATGGCTCTTGCAGC+AGG | 0.451956 | 2_3:-3344677 | None:intergenic |
| TCGCTTCCTGTGCTACCCAT+TGG | 0.453513 | 2_3:+3343172 | None:intergenic |
| TGGGAATCGATCGTCGTTTG+AGG | 0.459986 | 2_3:+3343205 | None:intergenic |
| AGTTAGACCAGGAGGAGGAT+TGG | 0.473714 | 2_3:-3343311 | Msa0271830:CDS |
| GGTGGGCAGCACTGGCATGT+GGG | 0.476478 | 2_3:+3344646 | None:intergenic |
| ACGACGATCGATTCCCATGA+TGG | 0.491752 | 2_3:-3343199 | Msa0271830:CDS |
| ACCCATTGGTTCACCATCAT+GGG | 0.505198 | 2_3:+3343186 | None:intergenic |
| TCAGTCCCCAATCCTCCTCC+TGG | 0.512490 | 2_3:+3343304 | None:intergenic |
| GGCGGATTTGTTGGTAGCTG+AGG | 0.513350 | 2_3:+3343118 | None:intergenic |
| TCGCTTCCTGTGCTACCCGT+TGG | 0.522959 | 2_3:+3343244 | None:intergenic |
| TTCCCATGATGGTGAACCAA+TGG | 0.526584 | 2_3:-3343188 | Msa0271830:CDS |
| TTTGGGGACTGATCCGCAAA+TGG | 0.526958 | 2_3:-3343146 | Msa0271830:CDS |
| TCCCATGATGGTGAACCAAT+GGG | 0.536615 | 2_3:-3343187 | Msa0271830:CDS |
| GGTGAACCAATGGGTAGCAC+AGG | 0.545743 | 2_3:-3343178 | Msa0271830:CDS |
| GGTGAACCAACGGGTAGCAC+AGG | 0.559451 | 2_3:-3343250 | Msa0271830:CDS |
| CGACCAATAGGTGAACCAAC+GGG | 0.569925 | 2_3:-3343259 | Msa0271830:CDS |
| CGTCGATTGATCGTCGATTG+CGG | 0.572151 | 2_3:+3343280 | None:intergenic |
| GCACAGGAAGCGAAGGTTTG+GGG | 0.608095 | 2_3:-3343162 | Msa0271830:CDS |
| ATGGGTAGCACAGGAAGCGA+AGG | 0.613165 | 2_3:-3343169 | Msa0271830:CDS |
| ACGGGTAGCACAGGAAGCGA+AGG | 0.625584 | 2_3:-3343241 | Msa0271830:CDS |
| TTAGACCAGGAGGAGGATTG+GGG | 0.626507 | 2_3:-3343309 | Msa0271830:CDS |
| CCAATAGTTAGACCAGGAGG+AGG | 0.628698 | 2_3:-3343316 | Msa0271830:CDS |
| ACGACCAATAGGTGAACCAA+CGG | 0.653566 | 2_3:-3343260 | Msa0271830:CDS |
| ATGAAACCAATAGTTAGACC+AGG | 0.663167 | 2_3:-3343322 | Msa0271830:CDS |
| AAACCAATAGTTAGACCAGG+AGG | 0.695638 | 2_3:-3343319 | Msa0271830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAAGAAACTAATTT+GGG | - | chr2_3:3343730-3343749 | Msa0271830:intron | 10.0% |
| !! | GAAAAAATCATAAAAAATTT+CGG | - | chr2_3:3344021-3344040 | Msa0271830:intron | 10.0% |
| !! | AAAAAATCGTAAAAAAAAAT+GGG | - | chr2_3:3344090-3344109 | Msa0271830:intron | 10.0% |
| !! | TTTAATTAAGAAACTAATTT+GGG | - | chr2_3:3343730-3343749 | Msa0271830:intron | 10.0% |
| !! | GAAAAAATCATAAAAAATTT+CGG | - | chr2_3:3344021-3344040 | Msa0271830:intron | 10.0% |
| !! | AAAAAATCGTAAAAAAAAAT+GGG | - | chr2_3:3344090-3344109 | Msa0271830:intron | 10.0% |
| !!! | AATTAGTTTCTTAATTAAAC+TGG | + | chr2_3:3343729-3343748 | None:intergenic | 15.0% |
| !! | GTTTAATTAAGAAACTAATT+TGG | - | chr2_3:3343729-3343748 | Msa0271830:intron | 15.0% |
| !!! | TTTTTTTTACGATTTTTTCT+CGG | + | chr2_3:3344088-3344107 | None:intergenic | 15.0% |
| !! | GAAAAAATCGTAAAAAAAAA+TGG | - | chr2_3:3344089-3344108 | Msa0271830:intron | 15.0% |
| !! | AAAAATCGTAAAAAAAAATG+GGG | - | chr2_3:3344091-3344110 | Msa0271830:intron | 15.0% |
| !!! | AATTAGTTTCTTAATTAAAC+TGG | + | chr2_3:3343729-3343748 | None:intergenic | 15.0% |
| !! | GTTTAATTAAGAAACTAATT+TGG | - | chr2_3:3343729-3343748 | Msa0271830:intron | 15.0% |
| !!! | TTTTTTTTACGATTTTTTCT+CGG | + | chr2_3:3344088-3344107 | None:intergenic | 15.0% |
| !! | GAAAAAATCGTAAAAAAAAA+TGG | - | chr2_3:3344089-3344108 | Msa0271830:intron | 15.0% |
| !! | AAAAATCGTAAAAAAAAATG+GGG | - | chr2_3:3344091-3344110 | Msa0271830:intron | 15.0% |
| !! | ATATATACAGTATACTTACA+TGG | + | chr2_3:3343169-3343188 | None:intergenic | 20.0% |
| !! | GTCTTTAAACATCTTATATA+AGG | + | chr2_3:3343256-3343275 | None:intergenic | 20.0% |
| !!! | GTTTAAAGACATTTTTCTTT+TGG | - | chr2_3:3343266-3343285 | Msa0271830:CDS | 20.0% |
| !! | TTGACTAAATTCAATTCTTA+AGG | - | chr2_3:3343301-3343320 | Msa0271830:CDS | 20.0% |
| !!! | TGGAAAAAAAAGTTTTTTGA+AGG | - | chr2_3:3344121-3344140 | Msa0271830:intron | 20.0% |
| !! | AAAACAAAAAAAAATAAGCC+AGG | - | chr2_3:3344146-3344165 | Msa0271830:intron | 20.0% |
| !! | AAACAAAAAAAAATAAGCCA+GGG | - | chr2_3:3344147-3344166 | Msa0271830:intron | 20.0% |
| !! | TTTAACTGATTAAAGTTTGT+AGG | - | chr2_3:3344245-3344264 | Msa0271830:intron | 20.0% |
| !! | TTAACTGATTAAAGTTTGTA+GGG | - | chr2_3:3344246-3344265 | Msa0271830:intron | 20.0% |
| !!! | AAAAAAAAAGGATTAGTGAT+TGG | - | chr2_3:3344271-3344290 | Msa0271830:intron | 20.0% |
| !! | TTCAATGATTATCAAATCTA+GGG | + | chr2_3:3344318-3344337 | None:intergenic | 20.0% |
| !! | ATATATACAGTATACTTACA+TGG | + | chr2_3:3343169-3343188 | None:intergenic | 20.0% |
| !! | GTCTTTAAACATCTTATATA+AGG | + | chr2_3:3343256-3343275 | None:intergenic | 20.0% |
| !!! | GTTTAAAGACATTTTTCTTT+TGG | - | chr2_3:3343266-3343285 | Msa0271830:CDS | 20.0% |
| !! | TTGACTAAATTCAATTCTTA+AGG | - | chr2_3:3343301-3343320 | Msa0271830:CDS | 20.0% |
| !!! | TGGAAAAAAAAGTTTTTTGA+AGG | - | chr2_3:3344121-3344140 | Msa0271830:intron | 20.0% |
| !! | AAAACAAAAAAAAATAAGCC+AGG | - | chr2_3:3344146-3344165 | Msa0271830:intron | 20.0% |
| !! | AAACAAAAAAAAATAAGCCA+GGG | - | chr2_3:3344147-3344166 | Msa0271830:intron | 20.0% |
| !! | TTTAACTGATTAAAGTTTGT+AGG | - | chr2_3:3344245-3344264 | Msa0271830:intron | 20.0% |
| !! | TTAACTGATTAAAGTTTGTA+GGG | - | chr2_3:3344246-3344265 | Msa0271830:intron | 20.0% |
| !!! | AAAAAAAAAGGATTAGTGAT+TGG | - | chr2_3:3344271-3344290 | Msa0271830:intron | 20.0% |
| !! | TTCAATGATTATCAAATCTA+GGG | + | chr2_3:3344318-3344337 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGACGCATATTTG+GGG | + | chr2_3:3343134-3343153 | None:intergenic | 25.0% |
| !!! | GATTTTTTAGACGCATATTT+GGG | + | chr2_3:3343135-3343154 | None:intergenic | 25.0% |
| !!! | AGATTTTTTAGACGCATATT+TGG | + | chr2_3:3343136-3343155 | None:intergenic | 25.0% |
| !!! | ATTTGGGATCAATAGATTTT+AGG | - | chr2_3:3343746-3343765 | Msa0271830:intron | 25.0% |
| !!! | TTTGGGATCAATAGATTTTA+GGG | - | chr2_3:3343747-3343766 | Msa0271830:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr2_3:3343850-3343869 | None:intergenic | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr2_3:3343851-3343870 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAAAATAAGCCA+GGG | + | chr2_3:3343950-3343969 | None:intergenic | 25.0% |
| ! | TTAAGGAAAAAAAATAAGCC+AGG | + | chr2_3:3343951-3343970 | None:intergenic | 25.0% |
| ! | AAAAAAAATGGGGAAAAATC+TGG | - | chr2_3:3344101-3344120 | Msa0271830:intron | 25.0% |
| ! | AACAAAAAAAAATAAGCCAG+GGG | - | chr2_3:3344148-3344167 | Msa0271830:intron | 25.0% |
| ! | TAACTGATTAAAGTTTGTAG+GGG | - | chr2_3:3344247-3344266 | Msa0271830:intron | 25.0% |
| ! | TCAATGATTATCAAATCTAG+GGG | + | chr2_3:3344317-3344336 | None:intergenic | 25.0% |
| ! | GTTCAATGATTATCAAATCT+AGG | + | chr2_3:3344319-3344338 | None:intergenic | 25.0% |
| !!! | TCATCATCATCAGAATTTTT+TGG | + | chr2_3:3344661-3344680 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGACGCATATTTG+GGG | + | chr2_3:3343134-3343153 | None:intergenic | 25.0% |
| !!! | GATTTTTTAGACGCATATTT+GGG | + | chr2_3:3343135-3343154 | None:intergenic | 25.0% |
| !!! | AGATTTTTTAGACGCATATT+TGG | + | chr2_3:3343136-3343155 | None:intergenic | 25.0% |
| !!! | ATTTGGGATCAATAGATTTT+AGG | - | chr2_3:3343746-3343765 | Msa0271830:intron | 25.0% |
| !!! | TTTGGGATCAATAGATTTTA+GGG | - | chr2_3:3343747-3343766 | Msa0271830:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr2_3:3343850-3343869 | None:intergenic | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr2_3:3343851-3343870 | None:intergenic | 25.0% |
| ! | TAAGGAAAAAAAATAAGCCA+GGG | + | chr2_3:3343950-3343969 | None:intergenic | 25.0% |
| ! | TTAAGGAAAAAAAATAAGCC+AGG | + | chr2_3:3343951-3343970 | None:intergenic | 25.0% |
| ! | AAAAAAAATGGGGAAAAATC+TGG | - | chr2_3:3344101-3344120 | Msa0271830:intron | 25.0% |
| ! | AACAAAAAAAAATAAGCCAG+GGG | - | chr2_3:3344148-3344167 | Msa0271830:intron | 25.0% |
| ! | TAACTGATTAAAGTTTGTAG+GGG | - | chr2_3:3344247-3344266 | Msa0271830:intron | 25.0% |
| ! | TCAATGATTATCAAATCTAG+GGG | + | chr2_3:3344317-3344336 | None:intergenic | 25.0% |
| ! | GTTCAATGATTATCAAATCT+AGG | + | chr2_3:3344319-3344338 | None:intergenic | 25.0% |
| !!! | TCATCATCATCAGAATTTTT+TGG | + | chr2_3:3344661-3344680 | None:intergenic | 25.0% |
| !!! | TTTTTTAGACGCATATTTGG+GGG | + | chr2_3:3343133-3343152 | None:intergenic | 30.0% |
| ATTCTTAAGGTGAATAAGTG+AGG | - | chr2_3:3343314-3343333 | Msa0271830:CDS | 30.0% | |
| !! | TGTTAATTTGTAGTCGACTT+AGG | - | chr2_3:3343566-3343585 | Msa0271830:intron | 30.0% |
| !! | GTTAATTTGTAGTCGACTTA+GGG | - | chr2_3:3343567-3343586 | Msa0271830:intron | 30.0% |
| !! | TTAATTTGTAGTCGACTTAG+GGG | - | chr2_3:3343568-3343587 | Msa0271830:intron | 30.0% |
| TTAAAAATTTGTAGTCGACC+AGG | - | chr2_3:3343623-3343642 | Msa0271830:intron | 30.0% | |
| AAAAAAGATTAGCGATTGCA+GGG | + | chr2_3:3343821-3343840 | None:intergenic | 30.0% | |
| AAAAAAAGATTAGCGATTGC+AGG | + | chr2_3:3343822-3343841 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr2_3:3343849-3343868 | None:intergenic | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | + | chr2_3:3343949-3343968 | None:intergenic | 30.0% | |
| ! | AAAAAAGGATTAGTGATTGG+AGG | - | chr2_3:3344274-3344293 | Msa0271830:intron | 30.0% |
| ! | AAAAAGGATTAGTGATTGGA+GGG | - | chr2_3:3344275-3344294 | Msa0271830:intron | 30.0% |
| !!! | TCATCATCAGAATTTTTTGG+CGG | + | chr2_3:3344658-3344677 | None:intergenic | 30.0% |
| !!! | TTTTTTAGACGCATATTTGG+GGG | + | chr2_3:3343133-3343152 | None:intergenic | 30.0% |
| ATTCTTAAGGTGAATAAGTG+AGG | - | chr2_3:3343314-3343333 | Msa0271830:CDS | 30.0% | |
| !! | TGTTAATTTGTAGTCGACTT+AGG | - | chr2_3:3343566-3343585 | Msa0271830:intron | 30.0% |
| !! | GTTAATTTGTAGTCGACTTA+GGG | - | chr2_3:3343567-3343586 | Msa0271830:intron | 30.0% |
| !! | TTAATTTGTAGTCGACTTAG+GGG | - | chr2_3:3343568-3343587 | Msa0271830:intron | 30.0% |
| TTAAAAATTTGTAGTCGACC+AGG | - | chr2_3:3343623-3343642 | Msa0271830:intron | 30.0% | |
| AAAAAAGATTAGCGATTGCA+GGG | + | chr2_3:3343821-3343840 | None:intergenic | 30.0% | |
| AAAAAAAGATTAGCGATTGC+AGG | + | chr2_3:3343822-3343841 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr2_3:3343849-3343868 | None:intergenic | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | + | chr2_3:3343949-3343968 | None:intergenic | 30.0% | |
| ! | AAAAAAGGATTAGTGATTGG+AGG | - | chr2_3:3344274-3344293 | Msa0271830:intron | 30.0% |
| ! | AAAAAGGATTAGTGATTGGA+GGG | - | chr2_3:3344275-3344294 | Msa0271830:intron | 30.0% |
| !!! | TCATCATCAGAATTTTTTGG+CGG | + | chr2_3:3344658-3344677 | None:intergenic | 30.0% |
| GTGAATAAGTGAGGAATCTA+AGG | - | chr2_3:3343323-3343342 | Msa0271830:CDS | 35.0% | |
| TATGAAAACGTAGAACCATC+TGG | + | chr2_3:3343498-3343517 | None:intergenic | 35.0% | |
| CAGTGATTAAATTGGGTCAA+AGG | - | chr2_3:3344215-3344234 | Msa0271830:intron | 35.0% | |
| GTTTGTAGGGGCAAAAAAAA+AGG | - | chr2_3:3344259-3344278 | Msa0271830:intron | 35.0% | |
| ATGAAACCAATAGTTAGACC+AGG | - | chr2_3:3344433-3344452 | Msa0271830:intron | 35.0% | |
| !!! | GAATTTTTTGGCGGATTTGT+TGG | + | chr2_3:3344649-3344668 | None:intergenic | 35.0% |
| GTGAATAAGTGAGGAATCTA+AGG | - | chr2_3:3343323-3343342 | Msa0271830:CDS | 35.0% | |
| TATGAAAACGTAGAACCATC+TGG | + | chr2_3:3343498-3343517 | None:intergenic | 35.0% | |
| CAGTGATTAAATTGGGTCAA+AGG | - | chr2_3:3344215-3344234 | Msa0271830:intron | 35.0% | |
| GTTTGTAGGGGCAAAAAAAA+AGG | - | chr2_3:3344259-3344278 | Msa0271830:intron | 35.0% | |
| ATGAAACCAATAGTTAGACC+AGG | - | chr2_3:3344433-3344452 | Msa0271830:intron | 35.0% | |
| !!! | GAATTTTTTGGCGGATTTGT+TGG | + | chr2_3:3344649-3344668 | None:intergenic | 35.0% |
| AAGGTTCAAACTTCGATCCT+TGG | - | chr2_3:3343342-3343361 | Msa0271830:CDS | 40.0% | |
| CCAACTGATCTATGTTCACA+GGG | - | chr2_3:3343382-3343401 | Msa0271830:intron | 40.0% | |
| !! | ACCGAAAAGATTACCGACTT+CGG | - | chr2_3:3343466-3343485 | Msa0271830:intron | 40.0% |
| ! | ACCGAAGTCGGTAATCTTTT+CGG | + | chr2_3:3343470-3343489 | None:intergenic | 40.0% |
| ! | TCTCTTGTTTAGCACTACAC+CGG | + | chr2_3:3343594-3343613 | None:intergenic | 40.0% |
| !! | CTAATGTGTAGTTTGCTACC+TGG | + | chr2_3:3343644-3343663 | None:intergenic | 40.0% |
| CAGTGATTAAACTGGGTCAA+AGG | + | chr2_3:3343881-3343900 | None:intergenic | 40.0% | |
| !!! | ATTTTGGTGATTTGCTGACG+TGG | + | chr2_3:3343904-3343923 | None:intergenic | 40.0% |
| ACGTCAGCAAATCACCAAAA+TGG | - | chr2_3:3343903-3343922 | Msa0271830:intron | 40.0% | |
| ACGTCAGCAAATGACCAAAA+GGG | + | chr2_3:3344193-3344212 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAT+TGG | - | chr2_3:3344207-3344226 | Msa0271830:intron | 40.0% | |
| GACGTGGCAGTGATTAAATT+GGG | - | chr2_3:3344208-3344227 | Msa0271830:intron | 40.0% | |
| AAACCAATAGTTAGACCAGG+AGG | - | chr2_3:3344436-3344455 | Msa0271830:intron | 40.0% | |
| AAGGTTCAAACTTCGATCCT+TGG | - | chr2_3:3343342-3343361 | Msa0271830:CDS | 40.0% | |
| CCAACTGATCTATGTTCACA+GGG | - | chr2_3:3343382-3343401 | Msa0271830:intron | 40.0% | |
| !! | ACCGAAAAGATTACCGACTT+CGG | - | chr2_3:3343466-3343485 | Msa0271830:intron | 40.0% |
| ! | ACCGAAGTCGGTAATCTTTT+CGG | + | chr2_3:3343470-3343489 | None:intergenic | 40.0% |
| ! | TCTCTTGTTTAGCACTACAC+CGG | + | chr2_3:3343594-3343613 | None:intergenic | 40.0% |
| !! | CTAATGTGTAGTTTGCTACC+TGG | + | chr2_3:3343644-3343663 | None:intergenic | 40.0% |
| CAGTGATTAAACTGGGTCAA+AGG | + | chr2_3:3343881-3343900 | None:intergenic | 40.0% | |
| !!! | ATTTTGGTGATTTGCTGACG+TGG | + | chr2_3:3343904-3343923 | None:intergenic | 40.0% |
| ACGTCAGCAAATCACCAAAA+TGG | - | chr2_3:3343903-3343922 | Msa0271830:intron | 40.0% | |
| ACGTCAGCAAATGACCAAAA+GGG | + | chr2_3:3344193-3344212 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAT+TGG | - | chr2_3:3344207-3344226 | Msa0271830:intron | 40.0% | |
| GACGTGGCAGTGATTAAATT+GGG | - | chr2_3:3344208-3344227 | Msa0271830:intron | 40.0% | |
| AAACCAATAGTTAGACCAGG+AGG | - | chr2_3:3344436-3344455 | Msa0271830:intron | 40.0% | |
| TTAGACGCATATTTGGGGGT+GGG | + | chr2_3:3343129-3343148 | None:intergenic | 45.0% | |
| TTTAGACGCATATTTGGGGG+TGG | + | chr2_3:3343130-3343149 | None:intergenic | 45.0% | |
| !! | CAGAGGCATTTCAGTATCCA+AGG | + | chr2_3:3343362-3343381 | None:intergenic | 45.0% |
| GAACATAGATCAGTTGGCAG+AGG | + | chr2_3:3343379-3343398 | None:intergenic | 45.0% | |
| GCCAACTGATCTATGTTCAC+AGG | - | chr2_3:3343381-3343400 | Msa0271830:intron | 45.0% | |
| CCCTGTGAACATAGATCAGT+TGG | + | chr2_3:3343385-3343404 | None:intergenic | 45.0% | |
| ! | GAAGTCGGTAATCTTTTCGG+TGG | + | chr2_3:3343467-3343486 | None:intergenic | 45.0% |
| TGTGATTCGTCCCTGCAAAT+AGG | - | chr2_3:3343777-3343796 | Msa0271830:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | - | chr2_3:3343778-3343797 | Msa0271830:intron | 45.0% | |
| TTAAGCGAGCCCTATTTGCA+GGG | + | chr2_3:3343790-3343809 | None:intergenic | 45.0% | |
| TTTAAGCGAGCCCTATTTGC+AGG | + | chr2_3:3343791-3343810 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAACT+GGG | + | chr2_3:3343888-3343907 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAAAC+TGG | + | chr2_3:3343889-3343908 | None:intergenic | 45.0% | |
| CACGTCAGCAAATGACCAAA+AGG | + | chr2_3:3344194-3344213 | None:intergenic | 45.0% | |
| !! | CTTTTGGTCATTTGCTGACG+TGG | - | chr2_3:3344192-3344211 | Msa0271830:intron | 45.0% |
| ACGATCAATCGACGACCAAT+AGG | - | chr2_3:3344484-3344503 | Msa0271830:intron | 45.0% | |
| ACGACCAATAGGTGAACCAA+CGG | - | chr2_3:3344495-3344514 | Msa0271830:intron | 45.0% | |
| ! | TTCCCATGATGGTGAACCAA+TGG | - | chr2_3:3344567-3344586 | Msa0271830:intron | 45.0% |
| ! | TCCCATGATGGTGAACCAAT+GGG | - | chr2_3:3344568-3344587 | Msa0271830:intron | 45.0% |
| !! | ACCCATTGGTTCACCATCAT+GGG | + | chr2_3:3344572-3344591 | None:intergenic | 45.0% |
| !! | TACCCATTGGTTCACCATCA+TGG | + | chr2_3:3344573-3344592 | None:intergenic | 45.0% |
| AGCTGAGGATTCTCCATTTG+CGG | + | chr2_3:3344625-3344644 | None:intergenic | 45.0% | |
| TTAGACGCATATTTGGGGGT+GGG | + | chr2_3:3343129-3343148 | None:intergenic | 45.0% | |
| TTTAGACGCATATTTGGGGG+TGG | + | chr2_3:3343130-3343149 | None:intergenic | 45.0% | |
| !! | CAGAGGCATTTCAGTATCCA+AGG | + | chr2_3:3343362-3343381 | None:intergenic | 45.0% |
| GAACATAGATCAGTTGGCAG+AGG | + | chr2_3:3343379-3343398 | None:intergenic | 45.0% | |
| GCCAACTGATCTATGTTCAC+AGG | - | chr2_3:3343381-3343400 | Msa0271830:intron | 45.0% | |
| CCCTGTGAACATAGATCAGT+TGG | + | chr2_3:3343385-3343404 | None:intergenic | 45.0% | |
| ! | GAAGTCGGTAATCTTTTCGG+TGG | + | chr2_3:3343467-3343486 | None:intergenic | 45.0% |
| TGTGATTCGTCCCTGCAAAT+AGG | - | chr2_3:3343777-3343796 | Msa0271830:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | - | chr2_3:3343778-3343797 | Msa0271830:intron | 45.0% | |
| TTAAGCGAGCCCTATTTGCA+GGG | + | chr2_3:3343790-3343809 | None:intergenic | 45.0% | |
| TTTAAGCGAGCCCTATTTGC+AGG | + | chr2_3:3343791-3343810 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAACT+GGG | + | chr2_3:3343888-3343907 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAAAC+TGG | + | chr2_3:3343889-3343908 | None:intergenic | 45.0% | |
| CACGTCAGCAAATGACCAAA+AGG | + | chr2_3:3344194-3344213 | None:intergenic | 45.0% | |
| !! | CTTTTGGTCATTTGCTGACG+TGG | - | chr2_3:3344192-3344211 | Msa0271830:intron | 45.0% |
| ACGATCAATCGACGACCAAT+AGG | - | chr2_3:3344484-3344503 | Msa0271830:intron | 45.0% | |
| ACGACCAATAGGTGAACCAA+CGG | - | chr2_3:3344495-3344514 | Msa0271830:intron | 45.0% | |
| ! | TTCCCATGATGGTGAACCAA+TGG | - | chr2_3:3344567-3344586 | Msa0271830:intron | 45.0% |
| ! | TCCCATGATGGTGAACCAAT+GGG | - | chr2_3:3344568-3344587 | Msa0271830:intron | 45.0% |
| !! | ACCCATTGGTTCACCATCAT+GGG | + | chr2_3:3344572-3344591 | None:intergenic | 45.0% |
| !! | TACCCATTGGTTCACCATCA+TGG | + | chr2_3:3344573-3344592 | None:intergenic | 45.0% |
| AGCTGAGGATTCTCCATTTG+CGG | + | chr2_3:3344625-3344644 | None:intergenic | 45.0% | |
| !!! | AATTTTGAAATTTTTTTTTA+AGG | + | chr2_3:3343968-3343987 | None:intergenic | 5.0% |
| !!! | AATTTTGAAATTTTTTTTTA+AGG | + | chr2_3:3343968-3343987 | None:intergenic | 5.0% |
| ! | TTTGTAGTCGACTTAGGGGC+CGG | - | chr2_3:3343572-3343591 | Msa0271830:intron | 50.0% |
| TCACCAAAATGGCACGCGAA+AGG | - | chr2_3:3343914-3343933 | Msa0271830:intron | 50.0% | |
| CGAAAGGACGAAAATACCCC+TGG | - | chr2_3:3343930-3343949 | Msa0271830:intron | 50.0% | |
| GCGAAAGGACAAAATACCCC+TGG | + | chr2_3:3344167-3344186 | None:intergenic | 50.0% | |
| CCTCCTCCTGGTCTAACTAT+TGG | + | chr2_3:3344442-3344461 | None:intergenic | 50.0% | |
| CCAATAGTTAGACCAGGAGG+AGG | - | chr2_3:3344439-3344458 | Msa0271830:intron | 50.0% | |
| AGTTAGACCAGGAGGAGGAT+TGG | - | chr2_3:3344444-3344463 | Msa0271830:intron | 50.0% | |
| GTTAGACCAGGAGGAGGATT+GGG | - | chr2_3:3344445-3344464 | Msa0271830:intron | 50.0% | |
| TTAGACCAGGAGGAGGATTG+GGG | - | chr2_3:3344446-3344465 | Msa0271830:intron | 50.0% | |
| ! | CGTCGATTGATCGTCGATTG+CGG | + | chr2_3:3344478-3344497 | None:intergenic | 50.0% |
| CGACCAATAGGTGAACCAAC+GGG | - | chr2_3:3344496-3344515 | Msa0271830:intron | 50.0% | |
| !! | CTACCCGTTGGTTCACCTAT+TGG | + | chr2_3:3344502-3344521 | None:intergenic | 50.0% |
| TAGCACAGGAAGCGAAGGTT+TGG | - | chr2_3:3344519-3344538 | Msa0271830:intron | 50.0% | |
| TGGGAATCGATCGTCGTTTG+AGG | + | chr2_3:3344553-3344572 | None:intergenic | 50.0% | |
| ! | ACGACGATCGATTCCCATGA+TGG | - | chr2_3:3344556-3344575 | Msa0271830:intron | 50.0% |
| TAGCACAGGAAGCGAAGGTT+TGG | - | chr2_3:3344519-3344538 | Msa0271830:intron | 50.0% | |
| AGCACAGGAAGCGAAGGTTT+GGG | - | chr2_3:3344520-3344539 | Msa0271830:intron | 50.0% | |
| TTTGGGGACTGATCCGCAAA+TGG | - | chr2_3:3344609-3344628 | Msa0271830:CDS | 50.0% | |
| ! | TTTGTAGTCGACTTAGGGGC+CGG | - | chr2_3:3343572-3343591 | Msa0271830:intron | 50.0% |
| TCACCAAAATGGCACGCGAA+AGG | - | chr2_3:3343914-3343933 | Msa0271830:intron | 50.0% | |
| CGAAAGGACGAAAATACCCC+TGG | - | chr2_3:3343930-3343949 | Msa0271830:intron | 50.0% | |
| GCGAAAGGACAAAATACCCC+TGG | + | chr2_3:3344167-3344186 | None:intergenic | 50.0% | |
| CCTCCTCCTGGTCTAACTAT+TGG | + | chr2_3:3344442-3344461 | None:intergenic | 50.0% | |
| CCAATAGTTAGACCAGGAGG+AGG | - | chr2_3:3344439-3344458 | Msa0271830:intron | 50.0% | |
| AGTTAGACCAGGAGGAGGAT+TGG | - | chr2_3:3344444-3344463 | Msa0271830:intron | 50.0% | |
| GTTAGACCAGGAGGAGGATT+GGG | - | chr2_3:3344445-3344464 | Msa0271830:intron | 50.0% | |
| TTAGACCAGGAGGAGGATTG+GGG | - | chr2_3:3344446-3344465 | Msa0271830:intron | 50.0% | |
| ! | CGTCGATTGATCGTCGATTG+CGG | + | chr2_3:3344478-3344497 | None:intergenic | 50.0% |
| CGACCAATAGGTGAACCAAC+GGG | - | chr2_3:3344496-3344515 | Msa0271830:intron | 50.0% | |
| !! | CTACCCGTTGGTTCACCTAT+TGG | + | chr2_3:3344502-3344521 | None:intergenic | 50.0% |
| TAGCACAGGAAGCGAAGGTT+TGG | - | chr2_3:3344519-3344538 | Msa0271830:intron | 50.0% | |
| TGGGAATCGATCGTCGTTTG+AGG | + | chr2_3:3344553-3344572 | None:intergenic | 50.0% | |
| ! | ACGACGATCGATTCCCATGA+TGG | - | chr2_3:3344556-3344575 | Msa0271830:intron | 50.0% |
| TAGCACAGGAAGCGAAGGTT+TGG | - | chr2_3:3344519-3344538 | Msa0271830:intron | 50.0% | |
| AGCACAGGAAGCGAAGGTTT+GGG | - | chr2_3:3344520-3344539 | Msa0271830:intron | 50.0% | |
| TTTGGGGACTGATCCGCAAA+TGG | - | chr2_3:3344609-3344628 | Msa0271830:CDS | 50.0% | |
| CATCTGGTCGTGACCGAAGT+CGG | + | chr2_3:3343482-3343501 | None:intergenic | 55.0% | |
| !!! | CGTCCTTTCGCGTGCCATTT+TGG | + | chr2_3:3343920-3343939 | None:intergenic | 55.0% |
| ! | TGTCCTTTCGCGTGCCCTTT+TGG | - | chr2_3:3344176-3344195 | Msa0271830:intron | 55.0% |
| ! | TGACCAAAAGGGCACGCGAA+AGG | + | chr2_3:3344182-3344201 | None:intergenic | 55.0% |
| GGTGAACCAATGGGTAGCAC+AGG | - | chr2_3:3344577-3344596 | Msa0271830:intron | 55.0% | |
| TCGCTTCCTGTGCTACCCAT+TGG | + | chr2_3:3344586-3344605 | None:intergenic | 55.0% | |
| ATGGGTAGCACAGGAAGCGA+AGG | - | chr2_3:3344586-3344605 | Msa0271830:intron | 55.0% | |
| GCACAGGAAGCGAAGGTTTG+GGG | - | chr2_3:3344521-3344540 | Msa0271830:intron | 55.0% | |
| !! | GGCGGATTTGTTGGTAGCTG+AGG | + | chr2_3:3344640-3344659 | None:intergenic | 55.0% |
| CATCTGGTCGTGACCGAAGT+CGG | + | chr2_3:3343482-3343501 | None:intergenic | 55.0% | |
| !!! | CGTCCTTTCGCGTGCCATTT+TGG | + | chr2_3:3343920-3343939 | None:intergenic | 55.0% |
| ! | TGTCCTTTCGCGTGCCCTTT+TGG | - | chr2_3:3344176-3344195 | Msa0271830:intron | 55.0% |
| ! | TGACCAAAAGGGCACGCGAA+AGG | + | chr2_3:3344182-3344201 | None:intergenic | 55.0% |
| GGTGAACCAATGGGTAGCAC+AGG | - | chr2_3:3344577-3344596 | Msa0271830:intron | 55.0% | |
| TCGCTTCCTGTGCTACCCAT+TGG | + | chr2_3:3344586-3344605 | None:intergenic | 55.0% | |
| ATGGGTAGCACAGGAAGCGA+AGG | - | chr2_3:3344586-3344605 | Msa0271830:intron | 55.0% | |
| GCACAGGAAGCGAAGGTTTG+GGG | - | chr2_3:3344521-3344540 | Msa0271830:intron | 55.0% | |
| !! | GGCGGATTTGTTGGTAGCTG+AGG | + | chr2_3:3344640-3344659 | None:intergenic | 55.0% |
| TATTTGGGGGTGGGCAGCAC+TGG | + | chr2_3:3343120-3343139 | None:intergenic | 60.0% | |
| CGACTTCGGTCACGACCAGA+TGG | - | chr2_3:3343480-3343499 | Msa0271830:intron | 60.0% | |
| TCAGTCCCCAATCCTCCTCC+TGG | + | chr2_3:3344454-3344473 | None:intergenic | 60.0% | |
| GGTGAACCAACGGGTAGCAC+AGG | - | chr2_3:3344505-3344524 | Msa0271830:intron | 60.0% | |
| TCGCTTCCTGTGCTACCCGT+TGG | + | chr2_3:3344514-3344533 | None:intergenic | 60.0% | |
| ACGGGTAGCACAGGAAGCGA+AGG | - | chr2_3:3344514-3344533 | Msa0271830:intron | 60.0% | |
| TATTTGGGGGTGGGCAGCAC+TGG | + | chr2_3:3343120-3343139 | None:intergenic | 60.0% | |
| CGACTTCGGTCACGACCAGA+TGG | - | chr2_3:3343480-3343499 | Msa0271830:intron | 60.0% | |
| TCAGTCCCCAATCCTCCTCC+TGG | + | chr2_3:3344454-3344473 | None:intergenic | 60.0% | |
| GGTGAACCAACGGGTAGCAC+AGG | - | chr2_3:3344505-3344524 | Msa0271830:intron | 60.0% | |
| TCGCTTCCTGTGCTACCCGT+TGG | + | chr2_3:3344514-3344533 | None:intergenic | 60.0% | |
| ACGGGTAGCACAGGAAGCGA+AGG | - | chr2_3:3344514-3344533 | Msa0271830:intron | 60.0% | |
| !! | GGTGGGCAGCACTGGCATGT+GGG | + | chr2_3:3343112-3343131 | None:intergenic | 65.0% |
| !! | GGTGGGCAGCACTGGCATGT+GGG | + | chr2_3:3343112-3343131 | None:intergenic | 65.0% |
| !! | GGGTGGGCAGCACTGGCATG+TGG | + | chr2_3:3343113-3343132 | None:intergenic | 70.0% |
| !! | GGGTGGGCAGCACTGGCATG+TGG | + | chr2_3:3343113-3343132 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 3343084 | 3344693 | 3343084 | ID=Msa0271830;Name=Msa0271830 |
| chr2_3 | mRNA | 3343084 | 3344693 | 3343084 | ID=Msa0271830-mRNA-1;Parent=Msa0271830;Name=Msa0271830-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|2|0|129 |
| chr2_3 | exon | 3344608 | 3344693 | 3344608 | ID=Msa0271830-mRNA-1:exon:1691;Parent=Msa0271830-mRNA-1 |
| chr2_3 | exon | 3343084 | 3343387 | 3343084 | ID=Msa0271830-mRNA-1:exon:1690;Parent=Msa0271830-mRNA-1 |
| chr2_3 | CDS | 3344608 | 3344693 | 3344608 | ID=Msa0271830-mRNA-1:cds;Parent=Msa0271830-mRNA-1 |
| chr2_3 | CDS | 3343084 | 3343387 | 3343084 | ID=Msa0271830-mRNA-1:cds;Parent=Msa0271830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
