Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0278290 | XP_013467661.1 | 97.059 | 136 | 4 | 0 | 4 | 139 | 121 | 256 | 3.24e-85 | 263 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0278290 | A0A072VJS3 | 97.059 | 136 | 4 | 0 | 4 | 139 | 121 | 256 | 1.55e-85 | 263 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0278290 | Msa0489800 | 0.838160 | 3.391750e-57 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0278290 | MtrunA17_Chr1g0175161 | 97.059 | 136 | 4 | 0 | 4 | 139 | 121 | 256 | 2.98e-89 | 263 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0278290 | AT3G57990.1 | 49.020 | 102 | 39 | 3 | 25 | 113 | 134 | 235 | 2.28e-22 | 91.3 |
Find 51 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGTCGGCTGGGGCGATTGC+AGG | 0.212071 | 2_3:-11253886 | Msa0278290:CDS |
GTCGGGAAGGTGCCGTCGGC+TGG | 0.220747 | 2_3:-11253898 | Msa0278290:CDS |
TTTCTTGTGATGGATAAAAT+TGG | 0.248063 | 2_3:-11253733 | Msa0278290:CDS |
TCCGCAAAACGGTGGCGTTT+TGG | 0.257586 | 2_3:-11253977 | Msa0278290:CDS |
CTGAGGTTGCGGCGAGGACT+AGG | 0.264777 | 2_3:-11253849 | Msa0278290:CDS |
TAGGGTTCCGGCTGAGGTTA+AGG | 0.286798 | 2_3:-11253782 | Msa0278290:CDS |
GAGGACTAGGGTTCCGATTA+GGG | 0.309618 | 2_3:-11253836 | Msa0278290:CDS |
CGAGGACTAGGGTTCCGATT+AGG | 0.329022 | 2_3:-11253837 | Msa0278290:CDS |
GTTAAGGGCGAAAGCGCGTT+TGG | 0.350617 | 2_3:-11253766 | Msa0278290:CDS |
TCGGGAAGGTGCCGTCGGCT+GGG | 0.374474 | 2_3:-11253897 | Msa0278290:CDS |
AAAGGAAAGGTTGGTGCTGC+TGG | 0.377756 | 2_3:-11253664 | Msa0278290:CDS |
CGGGAAGGTGCCGTCGGCTG+GGG | 0.380207 | 2_3:-11253896 | Msa0278290:CDS |
ACCGCGGCACGTCCCCTAAT+CGG | 0.411961 | 2_3:+11253823 | None:intergenic |
TTCTTGTGATGGATAAAATT+GGG | 0.414031 | 2_3:-11253732 | Msa0278290:CDS |
TTTGTTGAATCTCCGGTGAT+TGG | 0.435435 | 2_3:-11253931 | Msa0278290:CDS |
CAACATGTCGAAATCAAATC+AGG | 0.441154 | 2_3:-11254330 | None:intergenic |
ATTTGAGTTTGTTGAATCTC+CGG | 0.443909 | 2_3:-11253938 | Msa0278290:CDS |
AGGGTTCCGGCTGAGGTTAA+GGG | 0.446628 | 2_3:-11253781 | Msa0278290:CDS |
TTAAGGGCGAAAGCGCGTTT+GGG | 0.463653 | 2_3:-11253765 | Msa0278290:CDS |
CTTTCGCCCTTAACCTCAGC+CGG | 0.466668 | 2_3:+11253775 | None:intergenic |
GTGATTGGTGGGTTTAGTGT+CGG | 0.483284 | 2_3:-11253916 | Msa0278290:CDS |
GAGGGTTCTGTTTCTTGTGA+TGG | 0.490125 | 2_3:-11253743 | Msa0278290:CDS |
GGTTATGCGTTTCCGCAAAA+CGG | 0.490258 | 2_3:-11253988 | Msa0278290:CDS |
CTCGGCAACACAGCACTTGT+CGG | 0.490850 | 2_3:+11253631 | None:intergenic |
TGATTGGTGGGTTTAGTGTC+GGG | 0.491545 | 2_3:-11253915 | Msa0278290:CDS |
TTTAAATCCCCACACTCCGC+TGG | 0.496695 | 2_3:+11253697 | None:intergenic |
AACATTTGCCAGCGGAGTGT+GGG | 0.501336 | 2_3:-11253705 | Msa0278290:CDS |
AAGGTTGGTGCTGCTGGAGT+TGG | 0.503818 | 2_3:-11253658 | Msa0278290:CDS |
GATTTAAAGAATTTGAAGAA+AGG | 0.507692 | 2_3:-11253682 | Msa0278290:CDS |
GTTGAATCTCCGGTGATTGG+TGG | 0.516218 | 2_3:-11253928 | Msa0278290:CDS |
TGAGGTTGCGGCGAGGACTA+GGG | 0.516942 | 2_3:-11253848 | Msa0278290:CDS |
CGTCGGCTGGGGCGATTGCA+GGG | 0.524791 | 2_3:-11253885 | Msa0278290:CDS |
AATTTGAAGAAAGGAAAGGT+TGG | 0.524993 | 2_3:-11253673 | Msa0278290:CDS |
GAACATTTGCCAGCGGAGTG+TGG | 0.526006 | 2_3:-11253706 | Msa0278290:CDS |
AAAGAATTTGAAGAAAGGAA+AGG | 0.540260 | 2_3:-11253677 | Msa0278290:CDS |
TCCGATTAGGGGACGTGCCG+CGG | 0.544241 | 2_3:-11253824 | Msa0278290:CDS |
AGGGCGAAAGCGCGTTTGGG+AGG | 0.549372 | 2_3:-11253762 | Msa0278290:CDS |
CCTGCAATCGCCCCAGCCGA+CGG | 0.550116 | 2_3:+11253886 | None:intergenic |
TTGAATCTCCGGTGATTGGT+GGG | 0.555286 | 2_3:-11253927 | Msa0278290:CDS |
GGGCGAAAGCGCGTTTGGGA+GGG | 0.557564 | 2_3:-11253761 | Msa0278290:CDS |
TCTTGTGATGGATAAAATTG+GGG | 0.562838 | 2_3:-11253731 | Msa0278290:CDS |
TAGTGTCGGGAAGGTGCCGT+CGG | 0.576506 | 2_3:-11253902 | Msa0278290:CDS |
ACACTAAACCCACCAATCAC+CGG | 0.580138 | 2_3:+11253919 | None:intergenic |
TGGTGGGTTTAGTGTCGGGA+AGG | 0.594609 | 2_3:-11253911 | Msa0278290:CDS |
ACATTTGCCAGCGGAGTGTG+GGG | 0.619702 | 2_3:-11253704 | Msa0278290:CDS |
CTTCACTGCAAAACTCGTCT+CGG | 0.621132 | 2_3:+11253613 | None:intergenic |
TATGCGTTTCCGCAAAACGG+TGG | 0.624687 | 2_3:-11253985 | Msa0278290:CDS |
TGTGATGGATAAAATTGGGG+TGG | 0.626777 | 2_3:-11253728 | Msa0278290:CDS |
CGGGGACTGAGGTTGCGGCG+AGG | 0.653848 | 2_3:-11253855 | Msa0278290:CDS |
TGGGGTGGAACATTTGCCAG+CGG | 0.659065 | 2_3:-11253713 | Msa0278290:CDS |
AGGACTAGGGTTCCGATTAG+GGG | 0.661644 | 2_3:-11253835 | Msa0278290:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAAAATTTGATTTCAATT+TGG | - | chr2_3:11253736-11253755 | Msa0278290:CDS | 15.0% |
!!! | AGAAAATTTGATTTCAATTT+GGG | - | chr2_3:11253737-11253756 | Msa0278290:CDS | 15.0% |
!!! | GTGTTTTTGTTAGTTTAAAA+TGG | - | chr2_3:11253676-11253695 | Msa0278290:CDS | 20.0% |
!! | TCTCAATTTGAAAATTGTAT+TGG | - | chr2_3:11253812-11253831 | Msa0278290:CDS | 20.0% |
!! | GATTTAAAGAATTTGAAGAA+AGG | - | chr2_3:11254259-11254278 | Msa0278290:intron | 20.0% |
!!! | TGGTTTTGTTTAGATCAATA+AGG | - | chr2_3:11253696-11253715 | Msa0278290:CDS | 25.0% |
! | CACATTAATCAGTCAATTTA+GGG | + | chr2_3:11253780-11253799 | None:intergenic | 25.0% |
!! | ACAAAAACCATTTTAAACCT+AGG | - | chr2_3:11253879-11253898 | Msa0278290:CDS | 25.0% |
!! | AGTTCGATTTTAGATGTTAA+GGG | - | chr2_3:11253932-11253951 | Msa0278290:CDS | 25.0% |
!!! | TTTCTTGTGATGGATAAAAT+TGG | - | chr2_3:11254208-11254227 | Msa0278290:intron | 25.0% |
!!! | TTCTTGTGATGGATAAAATT+GGG | - | chr2_3:11254209-11254228 | Msa0278290:intron | 25.0% |
! | AAAGAATTTGAAGAAAGGAA+AGG | - | chr2_3:11254264-11254283 | Msa0278290:intron | 25.0% |
AATAAGGTTTCTCTGTTAGT+TGG | - | chr2_3:11253712-11253731 | Msa0278290:CDS | 30.0% | |
GCACATTAATCAGTCAATTT+AGG | + | chr2_3:11253781-11253800 | None:intergenic | 30.0% | |
! | AACCATTTTAAACCTAGGTT+TGG | - | chr2_3:11253884-11253903 | Msa0278290:CDS | 30.0% |
! | ACCATTTTAAACCTAGGTTT+GGG | - | chr2_3:11253885-11253904 | Msa0278290:CDS | 30.0% |
! | GAGTTCGATTTTAGATGTTA+AGG | - | chr2_3:11253931-11253950 | Msa0278290:CDS | 30.0% |
!! | ATTTGAGTTTGTTGAATCTC+CGG | - | chr2_3:11254003-11254022 | Msa0278290:CDS | 30.0% |
!! | TCTTGTGATGGATAAAATTG+GGG | - | chr2_3:11254210-11254229 | Msa0278290:intron | 30.0% |
AATTTGAAGAAAGGAAAGGT+TGG | - | chr2_3:11254268-11254287 | Msa0278290:intron | 30.0% | |
! | AATCAGTCAATTTAGGGCAT+CGG | + | chr2_3:11253774-11253793 | None:intergenic | 35.0% |
! | CCATTTTAAACCTAGGTTTG+GGG | - | chr2_3:11253886-11253905 | Msa0278290:CDS | 35.0% |
AAAGAAAAATCCCCAAACCT+AGG | + | chr2_3:11253899-11253918 | None:intergenic | 35.0% | |
CCCCAAACCTAGGTTTAAAA+TGG | + | chr2_3:11253889-11253908 | None:intergenic | 40.0% | |
TTTGTTGAATCTCCGGTGAT+TGG | - | chr2_3:11254010-11254029 | Msa0278290:CDS | 40.0% | |
!! | TGTGATGGATAAAATTGGGG+TGG | - | chr2_3:11254213-11254232 | Msa0278290:intron | 40.0% |
GGTTATGCGTTTCCGCAAAA+CGG | - | chr2_3:11253953-11253972 | Msa0278290:CDS | 45.0% | |
TTGAATCTCCGGTGATTGGT+GGG | - | chr2_3:11254014-11254033 | Msa0278290:CDS | 45.0% | |
ACACTAAACCCACCAATCAC+CGG | + | chr2_3:11254025-11254044 | None:intergenic | 45.0% | |
!! | GTGATTGGTGGGTTTAGTGT+CGG | - | chr2_3:11254025-11254044 | Msa0278290:intron | 45.0% |
!! | TGATTGGTGGGTTTAGTGTC+GGG | - | chr2_3:11254026-11254045 | Msa0278290:intron | 45.0% |
!! | TGAATTTTAGGTGGGGGGTT+AGG | - | chr2_3:11254140-11254159 | Msa0278290:intron | 45.0% |
!! | GAATTTTAGGTGGGGGGTTA+GGG | - | chr2_3:11254141-11254160 | Msa0278290:intron | 45.0% |
! | GAGGGTTCTGTTTCTTGTGA+TGG | - | chr2_3:11254198-11254217 | Msa0278290:intron | 45.0% |
!!! | TTTGTATAATTTTTAATTTT+TGG | + | chr2_3:11253864-11253883 | None:intergenic | 5.0% |
TATGCGTTTCCGCAAAACGG+TGG | - | chr2_3:11253956-11253975 | Msa0278290:CDS | 50.0% | |
GTTGAATCTCCGGTGATTGG+TGG | - | chr2_3:11254013-11254032 | Msa0278290:CDS | 50.0% | |
!! | GGCGATTGCAGGGTTGTTTT+CGG | - | chr2_3:11254066-11254085 | Msa0278290:intron | 50.0% |
!! | GCGATTGCAGGGTTGTTTTC+GGG | - | chr2_3:11254067-11254086 | Msa0278290:intron | 50.0% |
!! | CGATTGCAGGGTTGTTTTCG+GGG | - | chr2_3:11254068-11254087 | Msa0278290:intron | 50.0% |
GAGGACTAGGGTTCCGATTA+GGG | - | chr2_3:11254105-11254124 | Msa0278290:intron | 50.0% | |
AGGACTAGGGTTCCGATTAG+GGG | - | chr2_3:11254106-11254125 | Msa0278290:intron | 50.0% | |
!! | TGCCGCGGTGAATTTTAGGT+GGG | - | chr2_3:11254132-11254151 | Msa0278290:intron | 50.0% |
! | TTAAGGGCGAAAGCGCGTTT+GGG | - | chr2_3:11254176-11254195 | Msa0278290:intron | 50.0% |
AACATTTGCCAGCGGAGTGT+GGG | - | chr2_3:11254236-11254255 | Msa0278290:intron | 50.0% | |
TTTAAATCCCCACACTCCGC+TGG | + | chr2_3:11254247-11254266 | None:intergenic | 50.0% | |
!! | AAAGGAAAGGTTGGTGCTGC+TGG | - | chr2_3:11254277-11254296 | Msa0278290:intron | 50.0% |
! | TCCGCAAAACGGTGGCGTTT+TGG | - | chr2_3:11253964-11253983 | Msa0278290:CDS | 55.0% |
! | CCCAAAACGCCACCGTTTTG+CGG | + | chr2_3:11253968-11253987 | None:intergenic | 55.0% |
! | CCGCAAAACGGTGGCGTTTT+GGG | - | chr2_3:11253965-11253984 | Msa0278290:CDS | 55.0% |
! | CGCAAAACGGTGGCGTTTTG+GGG | - | chr2_3:11253966-11253985 | Msa0278290:CDS | 55.0% |
!! | TGGTGGGTTTAGTGTCGGGA+AGG | - | chr2_3:11254030-11254049 | Msa0278290:intron | 55.0% |
!! | AGGGTTGTTTTCGGGGACTG+AGG | - | chr2_3:11254075-11254094 | Msa0278290:intron | 55.0% |
!! | GTTTTCGGGGACTGAGGTTG+CGG | - | chr2_3:11254081-11254100 | Msa0278290:intron | 55.0% |
CGAGGACTAGGGTTCCGATT+AGG | - | chr2_3:11254104-11254123 | Msa0278290:intron | 55.0% | |
! | GACGTGCCGCGGTGAATTTT+AGG | - | chr2_3:11254128-11254147 | Msa0278290:intron | 55.0% |
! | GTGCCGCGGTGAATTTTAGG+TGG | - | chr2_3:11254131-11254150 | Msa0278290:intron | 55.0% |
!! | GCCGCGGTGAATTTTAGGTG+GGG | - | chr2_3:11254133-11254152 | Msa0278290:intron | 55.0% |
CCCCCACCTAAAATTCACCG+CGG | + | chr2_3:11254137-11254156 | None:intergenic | 55.0% | |
!! | CCGCGGTGAATTTTAGGTGG+GGG | - | chr2_3:11254134-11254153 | Msa0278290:intron | 55.0% |
!! | CGCGGTGAATTTTAGGTGGG+GGG | - | chr2_3:11254135-11254154 | Msa0278290:intron | 55.0% |
TAGGGTTCCGGCTGAGGTTA+AGG | - | chr2_3:11254159-11254178 | Msa0278290:intron | 55.0% | |
AGGGTTCCGGCTGAGGTTAA+GGG | - | chr2_3:11254160-11254179 | Msa0278290:intron | 55.0% | |
CTTTCGCCCTTAACCTCAGC+CGG | + | chr2_3:11254169-11254188 | None:intergenic | 55.0% | |
! | GTTAAGGGCGAAAGCGCGTT+TGG | - | chr2_3:11254175-11254194 | Msa0278290:intron | 55.0% |
TGGGGTGGAACATTTGCCAG+CGG | - | chr2_3:11254228-11254247 | Msa0278290:intron | 55.0% | |
GAACATTTGCCAGCGGAGTG+TGG | - | chr2_3:11254235-11254254 | Msa0278290:intron | 55.0% | |
ACATTTGCCAGCGGAGTGTG+GGG | - | chr2_3:11254237-11254256 | Msa0278290:intron | 55.0% | |
!! | AAGGTTGGTGCTGCTGGAGT+TGG | - | chr2_3:11254283-11254302 | Msa0278290:intron | 55.0% |
CTCGGCAACACAGCACTTGT+CGG | + | chr2_3:11254313-11254332 | None:intergenic | 55.0% | |
!! | TAGTGTCGGGAAGGTGCCGT+CGG | - | chr2_3:11254039-11254058 | Msa0278290:intron | 60.0% |
TGAGGTTGCGGCGAGGACTA+GGG | - | chr2_3:11254093-11254112 | Msa0278290:intron | 60.0% | |
TAGGTGGGGGGTTAGGGTTC+CGG | - | chr2_3:11254147-11254166 | Msa0278290:intron | 60.0% | |
CTGAGGTTGCGGCGAGGACT+AGG | - | chr2_3:11254092-11254111 | Msa0278290:intron | 65.0% | |
TCCGATTAGGGGACGTGCCG+CGG | - | chr2_3:11254117-11254136 | Msa0278290:intron | 65.0% | |
ACCGCGGCACGTCCCCTAAT+CGG | + | chr2_3:11254121-11254140 | None:intergenic | 65.0% | |
! | AGGGCGAAAGCGCGTTTGGG+AGG | - | chr2_3:11254179-11254198 | Msa0278290:intron | 65.0% |
! | GGGCGAAAGCGCGTTTGGGA+GGG | - | chr2_3:11254180-11254199 | Msa0278290:intron | 65.0% |
!! | TCGGGAAGGTGCCGTCGGCT+GGG | - | chr2_3:11254044-11254063 | Msa0278290:intron | 70.0% |
CCTGCAATCGCCCCAGCCGA+CGG | + | chr2_3:11254058-11254077 | None:intergenic | 70.0% | |
! | CGTCGGCTGGGGCGATTGCA+GGG | - | chr2_3:11254056-11254075 | Msa0278290:intron | 70.0% |
GGGGGTTAGGGTTCCGGCTG+AGG | - | chr2_3:11254153-11254172 | Msa0278290:intron | 70.0% | |
!! | GTCGGGAAGGTGCCGTCGGC+TGG | - | chr2_3:11254043-11254062 | Msa0278290:intron | 75.0% |
!! | CGGGAAGGTGCCGTCGGCTG+GGG | - | chr2_3:11254045-11254064 | Msa0278290:intron | 75.0% |
! | CCGTCGGCTGGGGCGATTGC+AGG | - | chr2_3:11254055-11254074 | Msa0278290:intron | 75.0% |
CGGGGACTGAGGTTGCGGCG+AGG | - | chr2_3:11254086-11254105 | Msa0278290:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 11253615 | 11254348 | 11253615 | ID=Msa0278290;Name=Msa0278290 |
chr2_3 | mRNA | 11253615 | 11254348 | 11253615 | ID=Msa0278290-mRNA-1;Parent=Msa0278290;Name=Msa0278290-mRNA-1;_AED=0.22;_eAED=0.27;_QI=0|0|0|0.5|1|1|2|0|147 |
chr2_3 | exon | 11254331 | 11254348 | 11254331 | ID=Msa0278290-mRNA-1:exon:5080;Parent=Msa0278290-mRNA-1 |
chr2_3 | exon | 11253615 | 11254040 | 11253615 | ID=Msa0278290-mRNA-1:exon:5079;Parent=Msa0278290-mRNA-1 |
chr2_3 | CDS | 11254331 | 11254348 | 11254331 | ID=Msa0278290-mRNA-1:cds;Parent=Msa0278290-mRNA-1 |
chr2_3 | CDS | 11253615 | 11254040 | 11253615 | ID=Msa0278290-mRNA-1:cds;Parent=Msa0278290-mRNA-1 |
Gene Sequence |
Protein sequence |