AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278420 MtrunA17_Chr3g0087491 31.208 298 173 7 23 307 1 279 3.95e-37 134
Msa0278420 MtrunA17_Chr8g0360541 60.606 99 38 1 166 264 12 109 8.21e-33 117
Msa0278420 MtrunA17_Chr8g0360141 29.560 318 181 9 23 316 1 299 9.56e-33 123
Msa0278420 MtrunA17_Chr2g0302731 37.719 114 68 3 3 116 6 116 2.88e-18 79.3
Msa0278420 MtrunA17_Chr3g0113081 30.345 145 94 3 8 150 375 514 2.73e-12 67.4
Msa0278420 MtrunA17_Chr1g0176881 27.160 162 111 3 18 175 24 182 6.32e-11 63.2
Msa0278420 MtrunA17_Chr7g0264841 24.573 293 185 10 19 307 39 299 6.81e-11 62.4
Msa0278420 MtrunA17_Chr2g0285481 27.642 123 87 2 27 149 35 155 7.92e-11 62.0
Msa0278420 MtrunA17_Chr1g0172741 27.642 123 87 2 27 149 35 155 8.15e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278420 AT2G24960.2 31.783 129 85 2 19 147 327 452 2.03e-14 74.3

Find 210 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAACAGGGCTTATATTT+AGG 0.103904 2_3:+11443681 Msa0278420:five_prime_UTR
GAAGCGCGCCATTGAAATTT+TGG 0.130481 2_3:-11444612 None:intergenic
TGAAACCAATGAAGTTATTT+TGG 0.159437 2_3:+11447648 Msa0278420:CDS
GTGCTAATGGTGGAGATATT+TGG 0.190376 2_3:+11447887 Msa0278420:CDS
GGTATGCACATTTGCATTTC+GGG 0.197023 2_3:-11444272 None:intergenic
TATGGATCCGGGTCAGGTTC+TGG 0.197086 2_3:+11443449 Msa0278420:five_prime_UTR
GCGCCACCTTTGCTGGATTC+TGG 0.216776 2_3:+11443412 Msa0278420:five_prime_UTR
CCATTGGATACACCCCAAAT+TGG 0.230352 2_3:-11444537 None:intergenic
TAGTCCAATTGCATGTTTCT+AGG 0.233764 2_3:-11447060 None:intergenic
TCCGTTTAACTCCACTTTCT+TGG 0.253883 2_3:-11444158 None:intergenic
TTGAATGGCACTTTAGATAT+TGG 0.260045 2_3:+11443942 Msa0278420:five_prime_UTR
TGGGCTGAATTAGTCGAAAT+TGG 0.264996 2_3:+11447907 Msa0278420:CDS
TGTTTGCAATGCTGGAATTT+AGG 0.265819 2_3:+11444355 Msa0278420:five_prime_UTR
TCTTCCAAGGCAAATTAATA+AGG 0.268835 2_3:+11443618 Msa0278420:five_prime_UTR
TGTTGTCTGGGTTTGGTAAT+GGG 0.271651 2_3:+11448236 Msa0278420:three_prime_UTR
ATATATTACCATTAATAAAA+AGG 0.271929 2_3:-11448057 None:intergenic
TGAAACAGGGCTTATATTTA+GGG 0.273729 2_3:+11443682 Msa0278420:five_prime_UTR
TTTCTTTCTATTATCTGTTT+AGG 0.276236 2_3:-11442834 None:intergenic
GGGTATGCACATTTGCATTT+CGG 0.291426 2_3:-11444273 None:intergenic
TGATGCTAACAAAACCTTAC+AGG 0.293151 2_3:+11443793 Msa0278420:five_prime_UTR
CACTCAAACCATTCTGAAAA+AGG 0.297160 2_3:-11447282 None:intergenic
GTGTCTCCATTCAGCAGCTT+CGG 0.298750 2_3:-11447473 None:intergenic
TGTATCTATTAATTTGAAAC+AGG 0.303098 2_3:+11443668 Msa0278420:five_prime_UTR
CTGGAGCCTTGTAATGAATA+TGG 0.303206 2_3:+11443431 Msa0278420:five_prime_UTR
TATGAGGAAGGTCTGTTGTC+TGG 0.305266 2_3:+11448223 Msa0278420:three_prime_UTR
GGCTGTTTCTGTGCTTTGTT+TGG 0.309796 2_3:+11448310 Msa0278420:three_prime_UTR
GCGAAAGGCGCCACCTTTGC+TGG 0.311681 2_3:+11443405 Msa0278420:five_prime_UTR
GCAACACAACACAATAATTA+AGG 0.324273 2_3:-11442891 None:intergenic
TGTTACATTACATGATTCAT+AGG 0.329819 2_3:+11443901 Msa0278420:five_prime_UTR
AGAGTGAACGTTCCTGTATA+AGG 0.330597 2_3:-11444294 None:intergenic
TGTCTCCATTCAGCAGCTTC+GGG 0.335174 2_3:-11447472 None:intergenic
ACTCCACTTTCTTGGCAAAC+TGG 0.336139 2_3:-11444150 None:intergenic
CTGTTGTCTGGGTTTGGTAA+TGG 0.339559 2_3:+11448235 Msa0278420:three_prime_UTR
GCTGGAATTTAGGCTATGTT+TGG 0.339690 2_3:+11444365 Msa0278420:five_prime_UTR
CAGAATGGTTTGAGTGGATT+CGG 0.339723 2_3:+11447289 Msa0278420:CDS
GCCTTTCGCGCCTTCTTAAC+CGG 0.347806 2_3:-11443391 None:intergenic
CAAGACAGTGTTTGCAATGC+TGG 0.347812 2_3:+11444347 Msa0278420:five_prime_UTR
CAAATGATCTATTTCCTCTA+TGG 0.351245 2_3:-11447623 None:intergenic
CCTCTCCAAAATAACTTCAT+TGG 0.354565 2_3:-11447653 None:intergenic
TGGAGCCACATTCCATTGTT+TGG 0.354685 2_3:+11444428 Msa0278420:five_prime_UTR
AATTTATAATAAAACGGTAT+AGG 0.359247 2_3:-11447499 None:intergenic
ACAAGGTACATGTATACTTT+AGG 0.365697 2_3:-11447949 None:intergenic
GATGACAAGATGGAATAAAA+AGG 0.368782 2_3:-11444659 None:intergenic
CATAGAGGAAATAGATCATT+TGG 0.369976 2_3:+11447624 Msa0278420:CDS
TTTCGTGAAAGTCAAGGAAT+AGG 0.373824 2_3:-11442803 None:intergenic
TCTTTAGAAATTGGTTTGTC+CGG 0.373847 2_3:-11447205 None:intergenic
CACAGCCATTAGTGACCAAC+TGG 0.376853 2_3:+11443965 Msa0278420:five_prime_UTR
AACAACAAGATTATGAGTTC+AGG 0.378782 2_3:+11443069 Msa0278420:five_prime_UTR
ATTTCCTTGCGGTTATCAAT+TGG 0.382990 2_3:-11448009 None:intergenic
TCAAGCATTTCAAGCTGAAA+AGG 0.383787 2_3:-11443129 None:intergenic
ATGGATCCGGGTCAGGTTCT+GGG 0.396969 2_3:+11443450 Msa0278420:five_prime_UTR
GAAGGTCTGTTGTCTGGGTT+TGG 0.399401 2_3:+11448229 Msa0278420:three_prime_UTR
AGCTCCTTCTTTCTCAGACT+TGG 0.399594 2_3:+11444320 Msa0278420:five_prime_UTR
CAAGCATTTCAAGCTGAAAA+GGG 0.399966 2_3:-11443128 None:intergenic
AATGAAAAGTGAGGACAAAA+TGG 0.400120 2_3:-11444587 None:intergenic
GTCTGAGAAGTTGGGGTTGT+CGG 0.401007 2_3:+11443312 Msa0278420:five_prime_UTR
GATAGAGCTGTCTGAGAAGT+TGG 0.402849 2_3:+11443303 Msa0278420:five_prime_UTR
AAGCGCTATGGACAACATTC+TGG 0.405692 2_3:+11447162 Msa0278420:CDS
TATAATAACAAAGATGAAAC+AGG 0.415760 2_3:-11443859 None:intergenic
TATACTTTAGGCAAGGAAGC+TGG 0.417718 2_3:-11447937 None:intergenic
TGCTAATGGTGGAGATATTT+GGG 0.420787 2_3:+11447888 Msa0278420:CDS
TTCATTCCCCAAAATTTCAA+TGG 0.422383 2_3:+11444604 Msa0278420:five_prime_UTR
TACTCCTTATTAATTTGCCT+TGG 0.424188 2_3:-11443622 None:intergenic
GGAGCAGCTTCTGCTGTAGC+AGG 0.424237 2_3:+11448331 Msa0278420:three_prime_UTR
GACTCCCAGTTGGTCACTAA+TGG 0.424541 2_3:-11443970 None:intergenic
CCTTCTTGTCTTTCAACCTC+CGG 0.426074 2_3:-11443363 None:intergenic
TTTGGAAAAGATCGAGCAAC+AGG 0.428413 2_3:+11447532 Msa0278420:CDS
ATGAAAATTTGCAGGTATTG+TGG 0.428884 2_3:+11448139 Msa0278420:intron
TTAGGCTATGTTTGGATTGG+TGG 0.430321 2_3:+11444373 Msa0278420:five_prime_UTR
TTTGTGGCTGGTGGAATCTA+GGG 0.432206 2_3:+11442927 Msa0278420:five_prime_UTR
AACTACAATGAAGTGGTGTC+TGG 0.434614 2_3:+11448185 Msa0278420:three_prime_UTR
ATAGAGCTGTCTGAGAAGTT+GGG 0.440544 2_3:+11443304 Msa0278420:five_prime_UTR
ATTGAAGGAATGAGTGGTAT+TGG 0.440699 2_3:-11444502 None:intergenic
GTTGACAATACTATTCTTCA+AGG 0.443103 2_3:-11448165 None:intergenic
AGATATTTGGGTTACCTTGT+TGG 0.443493 2_3:-11444739 None:intergenic
CATTGGATACACCCCAAATT+GGG 0.448304 2_3:-11444536 None:intergenic
TTGGCTAATTTATAATAAAA+CGG 0.449294 2_3:-11447505 None:intergenic
GTCTAGCCCGTTTGCCCGGA+CGG 0.452571 2_3:+11443472 Msa0278420:five_prime_UTR
GCTCCTTCTTTCTCAGACTT+GGG 0.455275 2_3:+11444321 Msa0278420:five_prime_UTR
TTAAATTAGTCTGCAAATCA+AGG 0.456974 2_3:-11443992 None:intergenic
GCCAAGAAAGTGGAGTTAAA+CGG 0.459225 2_3:+11444157 Msa0278420:five_prime_UTR
GAAAGACAAGAAGGAGTTAC+CGG 0.460260 2_3:+11443372 Msa0278420:five_prime_UTR
TCTTGAGAAGTAGAAATAGA+AGG 0.460904 2_3:-11447724 None:intergenic
CCTTGTAATGAATATGGATC+CGG 0.461257 2_3:+11443437 Msa0278420:five_prime_UTR
AAAACTCCGTCCGGGCAAAC+GGG 0.461918 2_3:-11443478 None:intergenic
AATTCCCAGAAGGGTGATGA+TGG 0.465278 2_3:+11443009 Msa0278420:five_prime_UTR
CTTTGAAATGAGAGCAAGAA+AGG 0.466525 2_3:+11447573 Msa0278420:CDS
TGGAATCTAGGGTTTGAAAA+GGG 0.466684 2_3:+11442938 Msa0278420:five_prime_UTR
TTAGTGTGGTTCCATTCCAT+TGG 0.471994 2_3:-11444553 None:intergenic
TAAAGTTTGAGAACCCTGTA+AGG 0.472851 2_3:-11443807 None:intergenic
AAACAGAGTAAGAGTGCTAA+TGG 0.473053 2_3:+11447874 Msa0278420:CDS
ATGAGGAAGGTCTGTTGTCT+GGG 0.474295 2_3:+11448224 Msa0278420:three_prime_UTR
ACAAATTGATGTCTCTAAAG+TGG 0.475195 2_3:+11444031 Msa0278420:five_prime_UTR
TTCAGTGGAGACATATCCTT+CGG 0.476034 2_3:+11443270 Msa0278420:intron
CTGGGTCTAGCCCGTTTGCC+CGG 0.476470 2_3:+11443468 Msa0278420:five_prime_UTR
AGAGTTGAAGAATCACTTCC+CGG 0.478784 2_3:+11447186 Msa0278420:CDS
CGGAGTTGTATATGTGTCGT+TGG 0.478918 2_3:-11444202 None:intergenic
AAGGCCTAGAAACATGCAAT+TGG 0.479046 2_3:+11447056 Msa0278420:CDS
TTCACGTATATAAAGAAAAG+TGG 0.480671 2_3:+11443508 Msa0278420:five_prime_UTR
ATGTTTGGATTGGTGGTGAG+TGG 0.481986 2_3:+11444380 Msa0278420:five_prime_UTR
AAAAGAATAATAATTATTAA+CGG 0.486539 2_3:-11442772 None:intergenic
AATTTAGGCTATGTTTGGAT+TGG 0.487302 2_3:+11444370 Msa0278420:five_prime_UTR
GAGTGAACGTTCCTGTATAA+GGG 0.487309 2_3:-11444293 None:intergenic
ATGAGTGGTATTGGATGGAA+TGG 0.488449 2_3:-11444493 None:intergenic
CAAGAAAGGCTGCAAATAGC+AGG 0.488896 2_3:+11447587 Msa0278420:CDS
AATGAATATGGATCCGGGTC+AGG 0.490132 2_3:+11443443 Msa0278420:five_prime_UTR
CTCAAGATGTGTCATCATCT+AGG 0.491937 2_3:+11447740 Msa0278420:CDS
TGGAATGGAATGGGATGGAA+TGG 0.492406 2_3:+11444408 Msa0278420:five_prime_UTR
GGACTGCTGAAGATGACGTT+TGG 0.494033 2_3:+11447335 Msa0278420:CDS
ACTTTAGAGACATCAATTTG+TGG 0.495199 2_3:-11444029 None:intergenic
TAAAATGAGCTCAGAGGAGT+TGG 0.496724 2_3:+11447849 Msa0278420:CDS
GACTTTAAAGACAATGGTTG+AGG 0.496784 2_3:+11447822 Msa0278420:CDS
GATGTGTTTAGTATTAGATA+TGG 0.497647 2_3:+11447003 Msa0278420:intron
ACACCCCAAATTGGGTGGAA+TGG 0.498525 2_3:-11444528 None:intergenic
ACCGGCACACAGTTGTTTAG+CGG 0.500536 2_3:-11444222 None:intergenic
GACAAATCTACCTTAGGATG+AGG 0.501762 2_3:+11443765 Msa0278420:five_prime_UTR
ATTGGTGGTGAGTGGTGGAA+TGG 0.505446 2_3:+11444388 Msa0278420:five_prime_UTR
CGTTTGGGACAGGCTAATTG+AGG 0.506705 2_3:+11447351 Msa0278420:CDS
ACAGGAGATCATGAAGATAC+AGG 0.507346 2_3:+11447550 Msa0278420:CDS
ATGCAATTGGACTACTGCTA+TGG 0.507466 2_3:+11447069 Msa0278420:CDS
TGGGTGGAATGGAAAATTGA+AGG 0.509518 2_3:-11444517 None:intergenic
GTGGTGGAATGGAATGGAAT+GGG 0.510533 2_3:+11444399 Msa0278420:five_prime_UTR
TTTCCCAAGTCTGAGAAAGA+AGG 0.511304 2_3:-11444324 None:intergenic
AATCCAGTTTGCCAAGAAAG+TGG 0.511405 2_3:+11444147 Msa0278420:five_prime_UTR
GGAATCTAGGGTTTGAAAAG+GGG 0.512539 2_3:+11442939 Msa0278420:five_prime_UTR
CCGGATCCATATTCATTACA+AGG 0.514192 2_3:-11443437 None:intergenic
GACTGCTGAAGATGACGTTT+GGG 0.515306 2_3:+11447336 Msa0278420:CDS
AAATGTGCATACCCTTATAC+AGG 0.517777 2_3:+11444282 Msa0278420:five_prime_UTR
TTTGGATTGGTGGTGAGTGG+TGG 0.518376 2_3:+11444383 Msa0278420:five_prime_UTR
AACAATGTACTCATGAATGA+TGG 0.520730 2_3:+11448468 Msa0278420:three_prime_UTR
GAAGGAGTTACCGGTTAAGA+AGG 0.522295 2_3:+11443381 Msa0278420:five_prime_UTR
GCAGTGAACACAATGAGAGT+TGG 0.522416 2_3:-11444686 None:intergenic
GTGGAATCTAGGGTTTGAAA+AGG 0.524133 2_3:+11442937 Msa0278420:five_prime_UTR
CATGAATGATGGTATTGTAA+AGG 0.525360 2_3:+11448479 Msa0278420:three_prime_UTR
TTCTAAGACTTTAAAGACAA+TGG 0.527887 2_3:+11447816 Msa0278420:CDS
AGTTGGAGAAGATGACAAGA+TGG 0.528018 2_3:-11444669 None:intergenic
TGGTTTGAGTGGATTCGGAT+GGG 0.528456 2_3:+11447294 Msa0278420:CDS
ATTCCAGCAGTTCTCCGAAA+AGG 0.528696 2_3:+11447701 Msa0278420:CDS
CTTTAGAAATTGGTTTGTCC+GGG 0.529559 2_3:-11447204 None:intergenic
AAGAGGCCAAGGAAATCAAA+AGG 0.532627 2_3:+11447037 Msa0278420:CDS
TATTTGCATCAACTAACAAT+GGG 0.532643 2_3:+11447112 Msa0278420:CDS
CTGAAGATGACGTTTGGGAC+AGG 0.535636 2_3:+11447341 Msa0278420:CDS
CATCATTAATCCTCATCCTA+AGG 0.539117 2_3:-11443775 None:intergenic
AGTGGTGGAATGGAATGGAA+TGG 0.539971 2_3:+11444398 Msa0278420:five_prime_UTR
TGGTGAGTGGTGGAATGGAA+TGG 0.542514 2_3:+11444393 Msa0278420:five_prime_UTR
TGGAATGGAATGGAGTGTGA+TGG 0.543299 2_3:+11444467 Msa0278420:five_prime_UTR
TTGGGGTGTATCCAATGGAA+TGG 0.543607 2_3:+11444542 Msa0278420:five_prime_UTR
TAGTATGACATCAAGCGCTA+TGG 0.543647 2_3:+11447150 Msa0278420:CDS
CCAATTTGGGGTGTATCCAA+TGG 0.545032 2_3:+11444537 Msa0278420:five_prime_UTR
CAGCTTCTGCTGTAGCAGGT+TGG 0.548309 2_3:+11448335 Msa0278420:three_prime_UTR
ATGGTTTGAGTGGATTCGGA+TGG 0.551462 2_3:+11447293 Msa0278420:CDS
ATTCCCAGAAGGGTGATGAT+GGG 0.552822 2_3:+11443010 Msa0278420:five_prime_UTR
ACTACAATGAAGTGGTGTCT+GGG 0.553261 2_3:+11448186 Msa0278420:three_prime_UTR
TTGGACTACTGCTATGGATG+GGG 0.554651 2_3:+11447075 Msa0278420:CDS
GGAGCTGTCATTGTGTTATG+AGG 0.556947 2_3:+11448207 Msa0278420:three_prime_UTR
GTTGCAATCAATAGAAGCAG+AGG 0.559885 2_3:-11444708 None:intergenic
GATGCTAACAAAACCTTACA+GGG 0.560570 2_3:+11443794 Msa0278420:five_prime_UTR
ATACTTTAGGCAAGGAAGCT+GGG 0.561001 2_3:-11447936 None:intergenic
TCCGCTAAACAACTGTGTGC+CGG 0.565610 2_3:+11444221 Msa0278420:five_prime_UTR
GTATCTATTAATTTGAAACA+GGG 0.566868 2_3:+11443669 Msa0278420:five_prime_UTR
AGTAATGAAAATTTCAACAA+TGG 0.570399 2_3:+11443042 Msa0278420:five_prime_UTR
TGAGTGGTATTGGATGGAAT+GGG 0.572150 2_3:-11444492 None:intergenic
TCTATCCTTGTTGTCTCCGA+AGG 0.573578 2_3:-11443286 None:intergenic
ACCGGTTAAGAAGGCGCGAA+AGG 0.574449 2_3:+11443390 Msa0278420:five_prime_UTR
CTGTCATTGTGTTATGAGGA+AGG 0.577813 2_3:+11448211 Msa0278420:three_prime_UTR
TGGAATGGAATGGAATGGGA+TGG 0.578099 2_3:+11444403 Msa0278420:five_prime_UTR
GGGATTCTACGACAAATATG+TGG 0.579377 2_3:+11447314 Msa0278420:CDS
ATGCAAATTCAAAGAGGCCA+AGG 0.581260 2_3:+11447026 Msa0278420:CDS
TTCCCAGAAGGGTGATGATG+GGG 0.582040 2_3:+11443011 Msa0278420:five_prime_UTR
ATTGGACTACTGCTATGGAT+GGG 0.584151 2_3:+11447074 Msa0278420:CDS
ATCTAGGGTTTGAAAAGGGG+AGG 0.590406 2_3:+11442942 Msa0278420:five_prime_UTR
ATATTTGCATCAACTAACAA+TGG 0.592612 2_3:+11447111 Msa0278420:CDS
GCAGAGAATAATTCCCAGAA+GGG 0.596544 2_3:+11443000 Msa0278420:five_prime_UTR
GCTCCAGAATCCAGCAAAGG+TGG 0.596648 2_3:-11443415 None:intergenic
CGGATCGACAGTTACAGATG+TGG 0.596696 2_3:+11443332 Msa0278420:five_prime_UTR
CTTGTAATGAATATGGATCC+GGG 0.597441 2_3:+11443438 Msa0278420:five_prime_UTR
AATTGGACTACTGCTATGGA+TGG 0.599809 2_3:+11447073 Msa0278420:CDS
TAGAGCTGTCTGAGAAGTTG+GGG 0.600237 2_3:+11443305 Msa0278420:five_prime_UTR
TTTCCATTCCACCCAATTTG+GGG 0.602668 2_3:+11444525 Msa0278420:five_prime_UTR
AAGCATTTCAAGCTGAAAAG+GGG 0.602993 2_3:-11443127 None:intergenic
TGGAAAATTGAAGGAATGAG+TGG 0.603662 2_3:-11444508 None:intergenic
AGAATAATAATTATTAACGG+TGG 0.604429 2_3:-11442769 None:intergenic
GAGTCATGGTGCTACCATAG+AGG 0.605019 2_3:+11447609 Msa0278420:CDS
GCTAGACCCAGAACCTGACC+CGG 0.605133 2_3:-11443456 None:intergenic
GCTGCAAATAGCAGGAGTCA+TGG 0.606627 2_3:+11447595 Msa0278420:CDS
AATAGACACATTATAAACAC+TGG 0.608986 2_3:-11443531 None:intergenic
TGGTAATTATATCATTAGTG+TGG 0.609295 2_3:-11444567 None:intergenic
AGCAGAGAATAATTCCCAGA+AGG 0.615412 2_3:+11442999 Msa0278420:five_prime_UTR
CATATCCTTCGGAGACAACA+AGG 0.621717 2_3:+11443281 Msa0278420:five_prime_UTR
TATTGTCAACTACAATGAAG+TGG 0.622094 2_3:+11448178 Msa0278420:three_prime_UTR
AAGGAATGAGTGGTATTGGA+TGG 0.631375 2_3:-11444498 None:intergenic
ATGCATCATCATTCTTAACA+AGG 0.632743 2_3:-11447966 None:intergenic
TGGATACACCCCAAATTGGG+TGG 0.633929 2_3:-11444533 None:intergenic
CAAAACCAAACAATGGAATG+TGG 0.635909 2_3:-11444433 None:intergenic
GCTCCCAACATCAAAACAGT+AGG 0.636040 2_3:-11448272 None:intergenic
AAGATTATGAGTTCAGGTGA+AGG 0.636764 2_3:+11443075 Msa0278420:five_prime_UTR
TGACACATTTATATGCAAAG+TGG 0.641313 2_3:-11443581 None:intergenic
GTACATGTATACTTTAGGCA+AGG 0.641875 2_3:-11447944 None:intergenic
GCAAATCAAGGACTCCCAGT+TGG 0.643708 2_3:-11443980 None:intergenic
CCGGAGGTTGAAAGACAAGA+AGG 0.646614 2_3:+11443363 Msa0278420:five_prime_UTR
CAGAGTAAGAGTGCTAATGG+TGG 0.647513 2_3:+11447877 Msa0278420:CDS
TCCCAGAAGGGTGATGATGG+GGG 0.649850 2_3:+11443012 Msa0278420:five_prime_UTR
AATTCCAATTGATAACCGCA+AGG 0.651275 2_3:+11448005 Msa0278420:CDS
AACAGCCTACAAAATTACAC+AGG 0.661832 2_3:-11448294 None:intergenic
GTGTTTATAATTAGAGACAG+AGG 0.663647 2_3:+11443727 Msa0278420:five_prime_UTR
AAGGCTCCAGAATCCAGCAA+AGG 0.677006 2_3:-11443418 None:intergenic
ATATGGATGCAAATTCAAAG+AGG 0.687133 2_3:+11447020 Msa0278420:exon
TGAGATGTAACATTTCCTTG+CGG 0.688770 2_3:-11448020 None:intergenic
GGTGTTTAAAATGAGCTCAG+AGG 0.692166 2_3:+11447843 Msa0278420:CDS
ACAGCCATTAGTGACCAACT+GGG 0.729169 2_3:+11443966 Msa0278420:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAGGAAAATATTATT+TGG + chr2_3:11446368-11446387 Msa0278420:intron 10.0%
!! TTTATAGGAAAATATTATTT+GGG + chr2_3:11446369-11446388 Msa0278420:intron 10.0%
!! ATATATTACCATTAATAAAA+AGG - chr2_3:11448060-11448079 None:intergenic 10.0%
!!! TTGTTTTAAGTTTATGATTT+TGG + chr2_3:11443206-11443225 Msa0278420:intron 15.0%
!! GGAAAAATAAAATAAGAAAT+GGG - chr2_3:11444819-11444838 None:intergenic 15.0%
!! AATATACAGATTTAGAAATA+TGG - chr2_3:11444946-11444965 None:intergenic 15.0%
!! ATAATATCATAACCTTTATA+TGG + chr2_3:11445317-11445336 Msa0278420:intron 15.0%
!! TTTCTATTTACCTTAAAATA+CGG - chr2_3:11445987-11446006 None:intergenic 15.0%
!!! ATAAACTCGTTATTTTTTAT+AGG + chr2_3:11446354-11446373 Msa0278420:intron 15.0%
!!! TTTTGAATGAATTTTATTTG+TGG + chr2_3:11446870-11446889 Msa0278420:intron 15.0%
!!! ATTTTTGAGTTTGTAATTTT+TGG + chr2_3:11446898-11446917 Msa0278420:intron 15.0%
!!! AAATATGAGTTTGTAATTTT+TGG + chr2_3:11446924-11446943 Msa0278420:intron 15.0%
!!! TTTATCTTTTCTTTAGAAAT+TGG - chr2_3:11447217-11447236 None:intergenic 15.0%
!! AATTTATAATAAAACGGTAT+AGG - chr2_3:11447502-11447521 None:intergenic 15.0%
!! TTGGCTAATTTATAATAAAA+CGG - chr2_3:11447508-11447527 None:intergenic 15.0%
!! AGAATAATAATTATTAACGG+TGG - chr2_3:11442772-11442791 None:intergenic 20.0%
!! TTTCTTTCTATTATCTGTTT+AGG - chr2_3:11442837-11442856 None:intergenic 20.0%
!! AGTAATGAAAATTTCAACAA+TGG + chr2_3:11443042-11443061 Msa0278420:five_prime_UTR 20.0%
!!! TAAGTTTATGATTTTGGTTA+TGG + chr2_3:11443212-11443231 Msa0278420:intron 20.0%
!!! AAGTTTATGATTTTGGTTAT+GGG + chr2_3:11443213-11443232 Msa0278420:intron 20.0%
!!! TTTTTTTTTGTGAATTTCAG+TGG + chr2_3:11443255-11443274 Msa0278420:intron 20.0%
!!! TGTATCTATTAATTTGAAAC+AGG + chr2_3:11443668-11443687 Msa0278420:five_prime_UTR 20.0%
!!! GTATCTATTAATTTGAAACA+GGG + chr2_3:11443669-11443688 Msa0278420:five_prime_UTR 20.0%
!! TATAATAACAAAGATGAAAC+AGG - chr2_3:11443862-11443881 None:intergenic 20.0%
!! CTGAAAAACAATAATTTGAA+TGG + chr2_3:11443927-11443946 Msa0278420:five_prime_UTR 20.0%
!! TGAAATTAACTGCTATAATA+TGG - chr2_3:11444070-11444089 None:intergenic 20.0%
!! AGAAAAAGAAGAAGATATTT+GGG - chr2_3:11444754-11444773 None:intergenic 20.0%
!! AAGAAAAAGAAGAAGATATT+TGG - chr2_3:11444755-11444774 None:intergenic 20.0%
!! GGGAAAAATAAAATAAGAAA+TGG - chr2_3:11444820-11444839 None:intergenic 20.0%
!! ACATGATTGATTACATTAAT+AGG - chr2_3:11445247-11445266 None:intergenic 20.0%
!! TATCATCATCTCTTTATATA+GGG - chr2_3:11445274-11445293 None:intergenic 20.0%
!! TTATCATCATCTCTTTATAT+AGG - chr2_3:11445275-11445294 None:intergenic 20.0%
!! ATAAACTCGAATAAAATCAT+GGG - chr2_3:11445432-11445451 None:intergenic 20.0%
!! TTCTATTTACCTTAAAATAC+GGG - chr2_3:11445986-11446005 None:intergenic 20.0%
!! TAATATGTTAATTGAATGTC+AGG + chr2_3:11446049-11446068 Msa0278420:intron 20.0%
!!! CTTATTTTTTTTTTACCTTG+TGG - chr2_3:11446293-11446312 None:intergenic 20.0%
!! AAATAACGAGTTTATTAGTT+TGG - chr2_3:11446349-11446368 None:intergenic 20.0%
!!! TATAAATTAGCCAAACTTTT+TGG + chr2_3:11447514-11447533 Msa0278420:CDS 20.0%
! CAAATTTGAAGAAGAAAAGA+AGG - chr2_3:11443176-11443195 None:intergenic 25.0%
! TTCACGTATATAAAGAAAAG+TGG + chr2_3:11443508-11443527 Msa0278420:five_prime_UTR 25.0%
! AATAGACACATTATAAACAC+TGG - chr2_3:11443534-11443553 None:intergenic 25.0%
! TGTTACATTACATGATTCAT+AGG + chr2_3:11443901-11443920 Msa0278420:five_prime_UTR 25.0%
!! TTAAATTAGTCTGCAAATCA+AGG - chr2_3:11443995-11444014 None:intergenic 25.0%
!! AGATTTTTAATGCATTCAAC+CGG - chr2_3:11444243-11444262 None:intergenic 25.0%
!!! TTTTTTGCAAAACCAAACAA+TGG - chr2_3:11444443-11444462 None:intergenic 25.0%
!!! ATTGTTTGGTTTTGCAAAAA+AGG + chr2_3:11444442-11444461 Msa0278420:five_prime_UTR 25.0%
!!! TTGTTTGGTTTTGCAAAAAA+GGG + chr2_3:11444443-11444462 Msa0278420:five_prime_UTR 25.0%
! TGGTAATTATATCATTAGTG+TGG - chr2_3:11444570-11444589 None:intergenic 25.0%
!! AAGAGCATAACTACTAATTT+GGG - chr2_3:11444840-11444859 None:intergenic 25.0%
!! AAAGAGCATAACTACTAATT+TGG - chr2_3:11444841-11444860 None:intergenic 25.0%
!!! AGAACAATCACTATTGATTT+GGG - chr2_3:11444870-11444889 None:intergenic 25.0%
!! AAGAACAATCACTATTGATT+TGG - chr2_3:11444871-11444890 None:intergenic 25.0%
!! AACAGGTTTTTCATTTTCTA+GGG - chr2_3:11444979-11444998 None:intergenic 25.0%
! ATTATAGTCAACTATGAGAA+GGG - chr2_3:11445146-11445165 None:intergenic 25.0%
! TGTGAAAGAAAAAAAATCAC+AGG - chr2_3:11445384-11445403 None:intergenic 25.0%
! CATAAACTCGAATAAAATCA+TGG - chr2_3:11445433-11445452 None:intergenic 25.0%
! TTGGTCATCTATAAAAATTC+AGG - chr2_3:11445474-11445493 None:intergenic 25.0%
! TTGACATAATTTCGCATATT+TGG - chr2_3:11445511-11445530 None:intergenic 25.0%
!!! TGTGATTCTAGAATGTATTT+GGG - chr2_3:11445601-11445620 None:intergenic 25.0%
! GAGCTAATGAAACATATTAT+AGG + chr2_3:11445645-11445664 Msa0278420:intron 25.0%
! CTTGAAATTTACATATGTCT+TGG + chr2_3:11446193-11446212 Msa0278420:intron 25.0%
! AAATTTACATATGTCTTGGT+TGG + chr2_3:11446197-11446216 Msa0278420:intron 25.0%
!!! TGAGTTTTAATACCAAATGT+GGG - chr2_3:11446594-11446613 None:intergenic 25.0%
!!! TTGAGTTTTAATACCAAATG+TGG - chr2_3:11446595-11446614 None:intergenic 25.0%
! AAATGAAAATGATTCTCAAG+AGG + chr2_3:11446710-11446729 Msa0278420:intron 25.0%
! AATGAAAATGATTCTCAAGA+GGG + chr2_3:11446711-11446730 Msa0278420:intron 25.0%
! CATAAGAATAACAACTCATT+AGG - chr2_3:11446835-11446854 None:intergenic 25.0%
! GATGTGTTTAGTATTAGATA+TGG + chr2_3:11447003-11447022 Msa0278420:intron 25.0%
! ATATTTGCATCAACTAACAA+TGG + chr2_3:11447111-11447130 Msa0278420:CDS 25.0%
! TATTTGCATCAACTAACAAT+GGG + chr2_3:11447112-11447131 Msa0278420:CDS 25.0%
! CTAACAATGGGAAATAAAAA+TGG + chr2_3:11447124-11447143 Msa0278420:CDS 25.0%
!!! GAGGTAGTATTTACTTTTAA+TGG + chr2_3:11447370-11447389 Msa0278420:intron 25.0%
!! TGAAACCAATGAAGTTATTT+TGG + chr2_3:11447648-11447667 Msa0278420:CDS 25.0%
!!! TTCTAAGACTTTAAAGACAA+TGG + chr2_3:11447816-11447835 Msa0278420:CDS 25.0%
! CATTAATAAAAAGGATAGTC+GGG - chr2_3:11448051-11448070 None:intergenic 25.0%
! CCATTAATAAAAAGGATAGT+CGG - chr2_3:11448052-11448071 None:intergenic 25.0%
! ATCTGTATATGAAAATTTGC+AGG + chr2_3:11448131-11448150 Msa0278420:intron 25.0%
! CAAAATTTTCGTGAAAGTCA+AGG - chr2_3:11442812-11442831 None:intergenic 30.0%
GCAACACAACACAATAATTA+AGG - chr2_3:11442894-11442913 None:intergenic 30.0%
AAAAATTCGATCTTGATCGA+TGG + chr2_3:11442969-11442988 Msa0278420:five_prime_UTR 30.0%
AACAACAAGATTATGAGTTC+AGG + chr2_3:11443069-11443088 Msa0278420:five_prime_UTR 30.0%
AAAATAACAAAAACTCCGTC+CGG - chr2_3:11443490-11443509 None:intergenic 30.0%
TGACACATTTATATGCAAAG+TGG - chr2_3:11443584-11443603 None:intergenic 30.0%
TCTTCCAAGGCAAATTAATA+AGG + chr2_3:11443618-11443637 Msa0278420:five_prime_UTR 30.0%
!! TACTCCTTATTAATTTGCCT+TGG - chr2_3:11443625-11443644 None:intergenic 30.0%
TTGAAACAGGGCTTATATTT+AGG + chr2_3:11443681-11443700 Msa0278420:five_prime_UTR 30.0%
TGAAACAGGGCTTATATTTA+GGG + chr2_3:11443682-11443701 Msa0278420:five_prime_UTR 30.0%
GTGTTTATAATTAGAGACAG+AGG + chr2_3:11443727-11443746 Msa0278420:five_prime_UTR 30.0%
! ACTTTTGACAAATCTACCTT+AGG + chr2_3:11443759-11443778 Msa0278420:five_prime_UTR 30.0%
TTGAATGGCACTTTAGATAT+TGG + chr2_3:11443942-11443961 Msa0278420:five_prime_UTR 30.0%
! ACTTTAGAGACATCAATTTG+TGG - chr2_3:11444032-11444051 None:intergenic 30.0%
! ACAAATTGATGTCTCTAAAG+TGG + chr2_3:11444031-11444050 Msa0278420:five_prime_UTR 30.0%
AATTTAGGCTATGTTTGGAT+TGG + chr2_3:11444370-11444389 Msa0278420:five_prime_UTR 30.0%
AATGAAAAGTGAGGACAAAA+TGG - chr2_3:11444590-11444609 None:intergenic 30.0%
TTCATTCCCCAAAATTTCAA+TGG + chr2_3:11444604-11444623 Msa0278420:five_prime_UTR 30.0%
GGCTAATGTGAAAAAAATGA+GGG - chr2_3:11444641-11444660 None:intergenic 30.0%
AGGCTAATGTGAAAAAAATG+AGG - chr2_3:11444642-11444661 None:intergenic 30.0%
GATGACAAGATGGAATAAAA+AGG - chr2_3:11444662-11444681 None:intergenic 30.0%
!! GAACAATCACTATTGATTTG+GGG - chr2_3:11444869-11444888 None:intergenic 30.0%
! CAACAGGTTTTTCATTTTCT+AGG - chr2_3:11444980-11444999 None:intergenic 30.0%
AGTTATAAACTCCAGTTGTA+GGG - chr2_3:11445071-11445090 None:intergenic 30.0%
TAGTTATAAACTCCAGTTGT+AGG - chr2_3:11445072-11445091 None:intergenic 30.0%
CAACTGGAGTTTATAACTAT+TGG + chr2_3:11445073-11445092 Msa0278420:intron 30.0%
GATTATAGTCAACTATGAGA+AGG - chr2_3:11445147-11445166 None:intergenic 30.0%
GAAAAAAAATCACAGGTTTG+AGG - chr2_3:11445377-11445396 None:intergenic 30.0%
!! CTGTGATTCTAGAATGTATT+TGG - chr2_3:11445602-11445621 None:intergenic 30.0%
GCAAAGTTTCTTTACATAGT+AGG + chr2_3:11445789-11445808 Msa0278420:intron 30.0%
!! ATATTTCTGAAACAACCTGA+TGG + chr2_3:11445918-11445937 Msa0278420:intron 30.0%
! CTATTGTTGTTAAGTATCTC+CGG - chr2_3:11445957-11445976 None:intergenic 30.0%
ATTGAATGTCAGGATTGTAT+TGG + chr2_3:11446059-11446078 Msa0278420:intron 30.0%
!! ACTCTTAACTATTCTAGAGT+CGG - chr2_3:11446240-11446259 None:intergenic 30.0%
TCTAGATACTTGTACAATTC+TGG - chr2_3:11446322-11446341 None:intergenic 30.0%
AAATATTATTTGGGTGATGC+AGG + chr2_3:11446378-11446397 Msa0278420:intron 30.0%
TATGGTTGAATAATTCACGA+GGG - chr2_3:11446488-11446507 None:intergenic 30.0%
TCAGTTGAAGTTTGTAGAAT+TGG - chr2_3:11446570-11446589 None:intergenic 30.0%
TCATCTATTAGAGTTTGGTT+GGG - chr2_3:11446672-11446691 None:intergenic 30.0%
! GGATTGCATTTGACTTTAAA+TGG + chr2_3:11446945-11446964 Msa0278420:intron 30.0%
ATATGGATGCAAATTCAAAG+AGG + chr2_3:11447020-11447039 Msa0278420:exon 30.0%
!! TCTTTAGAAATTGGTTTGTC+CGG - chr2_3:11447208-11447227 None:intergenic 30.0%
TGAAAAACATCAAAGCAAAG+TGG + chr2_3:11447245-11447264 Msa0278420:CDS 30.0%
! TTCTGAAAAAGGTCATAACA+AGG - chr2_3:11447274-11447293 None:intergenic 30.0%
!!! TGTTATGACCTTTTTCAGAA+TGG + chr2_3:11447274-11447293 Msa0278420:CDS 30.0%
! TCGATCTTTTCCAAAAAGTT+TGG - chr2_3:11447527-11447546 None:intergenic 30.0%
CAAATGATCTATTTCCTCTA+TGG - chr2_3:11447626-11447645 None:intergenic 30.0%
CATAGAGGAAATAGATCATT+TGG + chr2_3:11447624-11447643 Msa0278420:CDS 30.0%
TCTTGAGAAGTAGAAATAGA+AGG - chr2_3:11447727-11447746 None:intergenic 30.0%
GACTAAAAAACGAGCAAAAA+AGG + chr2_3:11447762-11447781 Msa0278420:CDS 30.0%
ACAAGGTACATGTATACTTT+AGG - chr2_3:11447952-11447971 None:intergenic 30.0%
ATGCATCATCATTCTTAACA+AGG - chr2_3:11447969-11447988 None:intergenic 30.0%
! GATGCATTGAAAGCTTTTAA+TGG + chr2_3:11447982-11448001 Msa0278420:CDS 30.0%
! CCGACTATCCTTTTTATTAA+TGG + chr2_3:11448049-11448068 Msa0278420:CDS 30.0%
! ATGAAAATTTGCAGGTATTG+TGG + chr2_3:11448139-11448158 Msa0278420:intron 30.0%
GTTGACAATACTATTCTTCA+AGG - chr2_3:11448168-11448187 None:intergenic 30.0%
TATTGTCAACTACAATGAAG+TGG + chr2_3:11448178-11448197 Msa0278420:three_prime_UTR 30.0%
!! GGGGTTGATTTTTGTATTTT+CGG + chr2_3:11448373-11448392 Msa0278420:three_prime_UTR 30.0%
!! TTTGGATTGCAGCTATTTTA+TGG + chr2_3:11448404-11448423 Msa0278420:three_prime_UTR 30.0%
!! TTGGATTGCAGCTATTTTAT+GGG + chr2_3:11448405-11448424 Msa0278420:three_prime_UTR 30.0%
AACAATGTACTCATGAATGA+TGG + chr2_3:11448468-11448487 Msa0278420:three_prime_UTR 30.0%
CATGAATGATGGTATTGTAA+AGG + chr2_3:11448479-11448498 Msa0278420:three_prime_UTR 30.0%
TTTCGTGAAAGTCAAGGAAT+AGG - chr2_3:11442806-11442825 None:intergenic 35.0%
! TGGAATCTAGGGTTTGAAAA+GGG + chr2_3:11442938-11442957 Msa0278420:five_prime_UTR 35.0%
AAGATTATGAGTTCAGGTGA+AGG + chr2_3:11443075-11443094 Msa0278420:five_prime_UTR 35.0%
AAGCATTTCAAGCTGAAAAG+GGG - chr2_3:11443130-11443149 None:intergenic 35.0%
CAAGCATTTCAAGCTGAAAA+GGG - chr2_3:11443131-11443150 None:intergenic 35.0%
TCAAGCATTTCAAGCTGAAA+AGG - chr2_3:11443132-11443151 None:intergenic 35.0%
CCTTGTAATGAATATGGATC+CGG + chr2_3:11443437-11443456 Msa0278420:five_prime_UTR 35.0%
CTTGTAATGAATATGGATCC+GGG + chr2_3:11443438-11443457 Msa0278420:five_prime_UTR 35.0%
AAATAACAAAAACTCCGTCC+GGG - chr2_3:11443489-11443508 None:intergenic 35.0%
CCTTGGAAGATAAAAAGTCA+GGG - chr2_3:11443608-11443627 None:intergenic 35.0%
CATCATTAATCCTCATCCTA+AGG - chr2_3:11443778-11443797 None:intergenic 35.0%
TGATGCTAACAAAACCTTAC+AGG + chr2_3:11443793-11443812 Msa0278420:five_prime_UTR 35.0%
GATGCTAACAAAACCTTACA+GGG + chr2_3:11443794-11443813 Msa0278420:five_prime_UTR 35.0%
TAAAGTTTGAGAACCCTGTA+AGG - chr2_3:11443810-11443829 None:intergenic 35.0%
AAATGTGCATACCCTTATAC+AGG + chr2_3:11444282-11444301 Msa0278420:five_prime_UTR 35.0%
TGTTTGCAATGCTGGAATTT+AGG + chr2_3:11444355-11444374 Msa0278420:five_prime_UTR 35.0%
CAAAACCAAACAATGGAATG+TGG - chr2_3:11444436-11444455 None:intergenic 35.0%
!!! TTGGTTTTGCAAAAAAGGGA+TGG + chr2_3:11444447-11444466 Msa0278420:five_prime_UTR 35.0%
TTTGCAAAAAAGGGATGGAA+TGG + chr2_3:11444452-11444471 Msa0278420:five_prime_UTR 35.0%
AAAAAAGGGATGGAATGGAA+TGG + chr2_3:11444457-11444476 Msa0278420:five_prime_UTR 35.0%
ATTGAAGGAATGAGTGGTAT+TGG - chr2_3:11444505-11444524 None:intergenic 35.0%
TGGAAAATTGAAGGAATGAG+TGG - chr2_3:11444511-11444530 None:intergenic 35.0%
! ATTTTCCATTCCACCCAATT+TGG + chr2_3:11444523-11444542 Msa0278420:five_prime_UTR 35.0%
! TTTTCCATTCCACCCAATTT+GGG + chr2_3:11444524-11444543 Msa0278420:five_prime_UTR 35.0%
!! ATTTTGGGGAATGAAAAGTG+AGG - chr2_3:11444599-11444618 None:intergenic 35.0%
! AGATATTTGGGTTACCTTGT+TGG - chr2_3:11444742-11444761 None:intergenic 35.0%
CTGAGTTCACAAAAATCAAC+AGG - chr2_3:11444996-11445015 None:intergenic 35.0%
AGGCTGATGATACCATATAA+AGG - chr2_3:11445332-11445351 None:intergenic 35.0%
TGTATGGCTGTTAAGCTAAA+AGG - chr2_3:11445352-11445371 None:intergenic 35.0%
!! ATTCTAGAATCACAGAGCAT+AGG + chr2_3:11445607-11445626 Msa0278420:intron 35.0%
!! TTCTAGAATCACAGAGCATA+GGG + chr2_3:11445608-11445627 Msa0278420:intron 35.0%
CACAAGTTTAAGAAAGCTTC+GGG - chr2_3:11445705-11445724 None:intergenic 35.0%
GCACAAGTTTAAGAAAGCTT+CGG - chr2_3:11445706-11445725 None:intergenic 35.0%
TCTTTCTTCTTTAGACGTTC+TGG + chr2_3:11445837-11445856 Msa0278420:intron 35.0%
AGTACTAGATGCTTTGATAG+AGG + chr2_3:11445887-11445906 Msa0278420:intron 35.0%
CGGAGATACTTAACAACAAT+AGG + chr2_3:11445955-11445974 Msa0278420:intron 35.0%
! TAGGTTCTACCCGTATTTTA+AGG + chr2_3:11445974-11445993 Msa0278420:intron 35.0%
! TCTTTTCTACCACGATATCT+AGG - chr2_3:11446134-11446153 None:intergenic 35.0%
TTACCCAACACAAAATGTCT+TGG + chr2_3:11446154-11446173 Msa0278420:intron 35.0%
TTACATATGTCTTGGTTGGA+TGG + chr2_3:11446201-11446220 Msa0278420:intron 35.0%
TACATATGTCTTGGTTGGAT+GGG + chr2_3:11446202-11446221 Msa0278420:intron 35.0%
TATCCTCTTAAAGTTCCACA+AGG + chr2_3:11446275-11446294 Msa0278420:intron 35.0%
TTACCTTGTGGAACTTTAAG+AGG - chr2_3:11446281-11446300 None:intergenic 35.0%
TGATGCAGGATTTCCTTTAA+AGG + chr2_3:11446392-11446411 Msa0278420:intron 35.0%
ATGTCTCATCACACCTTATA+GGG + chr2_3:11446416-11446435 Msa0278420:intron 35.0%
!! ACCACTTACAAGAGTATTCT+AGG + chr2_3:11446448-11446467 Msa0278420:intron 35.0%
TCCTAGAATACTCTTGTAAG+TGG - chr2_3:11446452-11446471 None:intergenic 35.0%
CTATGGTTGAATAATTCACG+AGG - chr2_3:11446489-11446508 None:intergenic 35.0%
TTCGTAATGACGAATGTCTA+TGG - chr2_3:11446506-11446525 None:intergenic 35.0%
! ATGTCGATTGAATGTGCATT+TGG + chr2_3:11446525-11446544 Msa0278420:intron 35.0%
CATCTATTAGAGTTTGGTTG+GGG - chr2_3:11446671-11446690 None:intergenic 35.0%
CTCATCTATTAGAGTTTGGT+TGG - chr2_3:11446673-11446692 None:intergenic 35.0%
CAACCAAACTCTAATAGATG+AGG + chr2_3:11446671-11446690 Msa0278420:intron 35.0%
TAGTCCAATTGCATGTTTCT+AGG - chr2_3:11447063-11447082 None:intergenic 35.0%
!! CTTTAGAAATTGGTTTGTCC+GGG - chr2_3:11447207-11447226 None:intergenic 35.0%
! CACTCAAACCATTCTGAAAA+AGG - chr2_3:11447285-11447304 None:intergenic 35.0%
!!! CTTTTTCAGAATGGTTTGAG+TGG + chr2_3:11447283-11447302 Msa0278420:CDS 35.0%
!! CTTTGAAATGAGAGCAAGAA+AGG + chr2_3:11447573-11447592 Msa0278420:CDS 35.0%
CCTCTCCAAAATAACTTCAT+TGG - chr2_3:11447656-11447675 None:intergenic 35.0%
!!! CCAATGAAGTTATTTTGGAG+AGG + chr2_3:11447653-11447672 Msa0278420:CDS 35.0%
! GTAGAAATAGAAGGCCTTTT+CGG - chr2_3:11447718-11447737 None:intergenic 35.0%
! GACTTTAAAGACAATGGTTG+AGG + chr2_3:11447822-11447841 Msa0278420:CDS 35.0%
!! AAACAGAGTAAGAGTGCTAA+TGG + chr2_3:11447874-11447893 Msa0278420:CDS 35.0%
! TGCTAATGGTGGAGATATTT+GGG + chr2_3:11447888-11447907 Msa0278420:CDS 35.0%
GTACATGTATACTTTAGGCA+AGG - chr2_3:11447947-11447966 None:intergenic 35.0%
! AATTCCAATTGATAACCGCA+AGG + chr2_3:11448005-11448024 Msa0278420:CDS 35.0%
ATTTCCTTGCGGTTATCAAT+TGG - chr2_3:11448012-11448031 None:intergenic 35.0%
TGAGATGTAACATTTCCTTG+CGG - chr2_3:11448023-11448042 None:intergenic 35.0%
!!! TGTCCTACTGTTTTGATGTT+GGG + chr2_3:11448269-11448288 Msa0278420:three_prime_UTR 35.0%
AACAGCCTACAAAATTACAC+AGG - chr2_3:11448297-11448316 None:intergenic 35.0%
!!! GTATTTTCGGTTTGCTGTTT+TGG + chr2_3:11448386-11448405 Msa0278420:three_prime_UTR 35.0%
!! GCTATTTTATGGGCTGTTTT+TGG + chr2_3:11448415-11448434 Msa0278420:three_prime_UTR 35.0%
! TGCTTCGTGTTCTTCTTTTG+TGG + chr2_3:11442911-11442930 Msa0278420:five_prime_UTR 40.0%
! GTGGAATCTAGGGTTTGAAA+AGG + chr2_3:11442937-11442956 Msa0278420:five_prime_UTR 40.0%
! GGAATCTAGGGTTTGAAAAG+GGG + chr2_3:11442939-11442958 Msa0278420:five_prime_UTR 40.0%
AGCAGAGAATAATTCCCAGA+AGG + chr2_3:11442999-11443018 Msa0278420:five_prime_UTR 40.0%
GCAGAGAATAATTCCCAGAA+GGG + chr2_3:11443000-11443019 Msa0278420:five_prime_UTR 40.0%
! GGGGTTTTCATTTGTCTCTT+AGG - chr2_3:11443111-11443130 None:intergenic 40.0%
TTCAGTGGAGACATATCCTT+CGG + chr2_3:11443270-11443289 Msa0278420:intron 40.0%
ATAGAGCTGTCTGAGAAGTT+GGG + chr2_3:11443304-11443323 Msa0278420:five_prime_UTR 40.0%
!!! TACAGATGTGGTTTTGTCAC+CGG + chr2_3:11443344-11443363 Msa0278420:five_prime_UTR 40.0%
GAAAGACAAGAAGGAGTTAC+CGG + chr2_3:11443372-11443391 Msa0278420:five_prime_UTR 40.0%
! CTGGAGCCTTGTAATGAATA+TGG + chr2_3:11443431-11443450 Msa0278420:five_prime_UTR 40.0%
CCGGATCCATATTCATTACA+AGG - chr2_3:11443440-11443459 None:intergenic 40.0%
! CCCTGACTTTTTATCTTCCA+AGG + chr2_3:11443605-11443624 Msa0278420:five_prime_UTR 40.0%
GCCTTGGAAGATAAAAAGTC+AGG - chr2_3:11443609-11443628 None:intergenic 40.0%
GACAAATCTACCTTAGGATG+AGG + chr2_3:11443765-11443784 Msa0278420:five_prime_UTR 40.0%
AATCCAGTTTGCCAAGAAAG+TGG + chr2_3:11444147-11444166 Msa0278420:five_prime_UTR 40.0%
GCCAAGAAAGTGGAGTTAAA+CGG + chr2_3:11444157-11444176 Msa0278420:five_prime_UTR 40.0%
TCCGTTTAACTCCACTTTCT+TGG - chr2_3:11444161-11444180 None:intergenic 40.0%
GGTATGCACATTTGCATTTC+GGG - chr2_3:11444275-11444294 None:intergenic 40.0%
GGGTATGCACATTTGCATTT+CGG - chr2_3:11444276-11444295 None:intergenic 40.0%
GAGTGAACGTTCCTGTATAA+GGG - chr2_3:11444296-11444315 None:intergenic 40.0%
AGAGTGAACGTTCCTGTATA+AGG - chr2_3:11444297-11444316 None:intergenic 40.0%
TTTCCCAAGTCTGAGAAAGA+AGG - chr2_3:11444327-11444346 None:intergenic 40.0%
GCTGGAATTTAGGCTATGTT+TGG + chr2_3:11444365-11444384 Msa0278420:five_prime_UTR 40.0%
! TTAGGCTATGTTTGGATTGG+TGG + chr2_3:11444373-11444392 Msa0278420:five_prime_UTR 40.0%
! TGAGTGGTATTGGATGGAAT+GGG - chr2_3:11444495-11444514 None:intergenic 40.0%
! ATGAGTGGTATTGGATGGAA+TGG - chr2_3:11444496-11444515 None:intergenic 40.0%
! AAGGAATGAGTGGTATTGGA+TGG - chr2_3:11444501-11444520 None:intergenic 40.0%
TGGGTGGAATGGAAAATTGA+AGG - chr2_3:11444520-11444539 None:intergenic 40.0%
TTTCCATTCCACCCAATTTG+GGG + chr2_3:11444525-11444544 Msa0278420:five_prime_UTR 40.0%
CATTGGATACACCCCAAATT+GGG - chr2_3:11444539-11444558 None:intergenic 40.0%
TTAGTGTGGTTCCATTCCAT+TGG - chr2_3:11444556-11444575 None:intergenic 40.0%
! AAGCGCGCCATTGAAATTTT+GGG - chr2_3:11444614-11444633 None:intergenic 40.0%
AGTTGGAGAAGATGACAAGA+TGG - chr2_3:11444672-11444691 None:intergenic 40.0%
GTTGCAATCAATAGAAGCAG+AGG - chr2_3:11444711-11444730 None:intergenic 40.0%
! TGCAACTTTTCACTCCAACA+AGG + chr2_3:11444725-11444744 Msa0278420:five_prime_UTR 40.0%
TTCTTTATGTGCCCTACAAC+TGG + chr2_3:11445057-11445076 Msa0278420:intron 40.0%
TCACAGGTTTGAGGATTGTA+TGG - chr2_3:11445368-11445387 None:intergenic 40.0%
!! TTTGGCTCTTATGTCTTCGT+TGG - chr2_3:11445493-11445512 None:intergenic 40.0%
TGGACTTACACATACACGAA+GGG + chr2_3:11445746-11445765 Msa0278420:intron 40.0%
ACTAGATGCTTTGATAGAGG+TGG + chr2_3:11445890-11445909 Msa0278420:intron 40.0%
! TTGTTGTTAAGTATCTCCGG+AGG - chr2_3:11445954-11445973 None:intergenic 40.0%
! CAGCCAAGACATTTTGTGTT+GGG - chr2_3:11446160-11446179 None:intergenic 40.0%
GTGATGAGACATGCCTTTAA+AGG - chr2_3:11446408-11446427 None:intergenic 40.0%
CATGTCTCATCACACCTTAT+AGG + chr2_3:11446415-11446434 Msa0278420:intron 40.0%
TGTCTCATCACACCTTATAG+GGG + chr2_3:11446417-11446436 Msa0278420:intron 40.0%
AATAATTCACGAGGGTTTCG+AGG - chr2_3:11446480-11446499 None:intergenic 40.0%
GCACCTCATCTATTAGAGTT+TGG - chr2_3:11446677-11446696 None:intergenic 40.0%
GACAATGTTGATGCAGTTAG+TGG + chr2_3:11446753-11446772 Msa0278420:intron 40.0%
ATGCAAATTCAAAGAGGCCA+AGG + chr2_3:11447026-11447045 Msa0278420:CDS 40.0%
AAGAGGCCAAGGAAATCAAA+AGG + chr2_3:11447037-11447056 Msa0278420:CDS 40.0%
!!! TCTAGGCCTTTTGATTTCCT+TGG - chr2_3:11447046-11447065 None:intergenic 40.0%
AAGGCCTAGAAACATGCAAT+TGG + chr2_3:11447056-11447075 Msa0278420:CDS 40.0%
ATGCAATTGGACTACTGCTA+TGG + chr2_3:11447069-11447088 Msa0278420:CDS 40.0%
AATTGGACTACTGCTATGGA+TGG + chr2_3:11447073-11447092 Msa0278420:CDS 40.0%
ATTGGACTACTGCTATGGAT+GGG + chr2_3:11447074-11447093 Msa0278420:CDS 40.0%
TAGTATGACATCAAGCGCTA+TGG + chr2_3:11447150-11447169 Msa0278420:CDS 40.0%
AGAGTTGAAGAATCACTTCC+CGG + chr2_3:11447186-11447205 Msa0278420:CDS 40.0%
! CAGAATGGTTTGAGTGGATT+CGG + chr2_3:11447289-11447308 Msa0278420:CDS 40.0%
GGGATTCTACGACAAATATG+TGG + chr2_3:11447314-11447333 Msa0278420:CDS 40.0%
TTTGGAAAAGATCGAGCAAC+AGG + chr2_3:11447532-11447551 Msa0278420:CDS 40.0%
ACAGGAGATCATGAAGATAC+AGG + chr2_3:11447550-11447569 Msa0278420:CDS 40.0%
! GGTGTTTAAAATGAGCTCAG+AGG + chr2_3:11447843-11447862 Msa0278420:CDS 40.0%
TAAAATGAGCTCAGAGGAGT+TGG + chr2_3:11447849-11447868 Msa0278420:CDS 40.0%
! GTGCTAATGGTGGAGATATT+TGG + chr2_3:11447887-11447906 Msa0278420:CDS 40.0%
TGGGCTGAATTAGTCGAAAT+TGG + chr2_3:11447907-11447926 Msa0278420:CDS 40.0%
ATACTTTAGGCAAGGAAGCT+GGG - chr2_3:11447939-11447958 None:intergenic 40.0%
TATACTTTAGGCAAGGAAGC+TGG - chr2_3:11447940-11447959 None:intergenic 40.0%
AACTACAATGAAGTGGTGTC+TGG + chr2_3:11448185-11448204 Msa0278420:three_prime_UTR 40.0%
ACTACAATGAAGTGGTGTCT+GGG + chr2_3:11448186-11448205 Msa0278420:three_prime_UTR 40.0%
CTGTCATTGTGTTATGAGGA+AGG + chr2_3:11448211-11448230 Msa0278420:three_prime_UTR 40.0%
! TGTTGTCTGGGTTTGGTAAT+GGG + chr2_3:11448236-11448255 Msa0278420:three_prime_UTR 40.0%
!!! CTGTCCTACTGTTTTGATGT+TGG + chr2_3:11448268-11448287 Msa0278420:three_prime_UTR 40.0%
! TCGTGTTCTTCTTTTGTGGC+TGG + chr2_3:11442915-11442934 Msa0278420:five_prime_UTR 45.0%
! TGTTCTTCTTTTGTGGCTGG+TGG + chr2_3:11442918-11442937 Msa0278420:five_prime_UTR 45.0%
! TTTTGTGGCTGGTGGAATCT+AGG + chr2_3:11442926-11442945 Msa0278420:five_prime_UTR 45.0%
TTTGTGGCTGGTGGAATCTA+GGG + chr2_3:11442927-11442946 Msa0278420:five_prime_UTR 45.0%
! ATCTAGGGTTTGAAAAGGGG+AGG + chr2_3:11442942-11442961 Msa0278420:five_prime_UTR 45.0%
AATTCCCAGAAGGGTGATGA+TGG + chr2_3:11443009-11443028 Msa0278420:five_prime_UTR 45.0%
ATTCCCAGAAGGGTGATGAT+GGG + chr2_3:11443010-11443029 Msa0278420:five_prime_UTR 45.0%
CATATCCTTCGGAGACAACA+AGG + chr2_3:11443281-11443300 Msa0278420:five_prime_UTR 45.0%
! TCTATCCTTGTTGTCTCCGA+AGG - chr2_3:11443289-11443308 None:intergenic 45.0%
GATAGAGCTGTCTGAGAAGT+TGG + chr2_3:11443303-11443322 Msa0278420:five_prime_UTR 45.0%
TAGAGCTGTCTGAGAAGTTG+GGG + chr2_3:11443305-11443324 Msa0278420:five_prime_UTR 45.0%
CCTTCTTGTCTTTCAACCTC+CGG - chr2_3:11443366-11443385 None:intergenic 45.0%
! GAAGGAGTTACCGGTTAAGA+AGG + chr2_3:11443381-11443400 Msa0278420:five_prime_UTR 45.0%
AATGAATATGGATCCGGGTC+AGG + chr2_3:11443443-11443462 Msa0278420:five_prime_UTR 45.0%
ACAGCCATTAGTGACCAACT+GGG + chr2_3:11443966-11443985 Msa0278420:five_prime_UTR 45.0%
ACTCCACTTTCTTGGCAAAC+TGG - chr2_3:11444153-11444172 None:intergenic 45.0%
CGGAGTTGTATATGTGTCGT+TGG - chr2_3:11444205-11444224 None:intergenic 45.0%
AGCTCCTTCTTTCTCAGACT+TGG + chr2_3:11444320-11444339 Msa0278420:five_prime_UTR 45.0%
GCTCCTTCTTTCTCAGACTT+GGG + chr2_3:11444321-11444340 Msa0278420:five_prime_UTR 45.0%
CAAGACAGTGTTTGCAATGC+TGG + chr2_3:11444347-11444366 Msa0278420:five_prime_UTR 45.0%
!! ATGTTTGGATTGGTGGTGAG+TGG + chr2_3:11444380-11444399 Msa0278420:five_prime_UTR 45.0%
! AGTGGTGGAATGGAATGGAA+TGG + chr2_3:11444398-11444417 Msa0278420:five_prime_UTR 45.0%
! GTGGTGGAATGGAATGGAAT+GGG + chr2_3:11444399-11444418 Msa0278420:five_prime_UTR 45.0%
TGGAATGGAATGGAATGGGA+TGG + chr2_3:11444403-11444422 Msa0278420:five_prime_UTR 45.0%
TGGAATGGAATGGGATGGAA+TGG + chr2_3:11444408-11444427 Msa0278420:five_prime_UTR 45.0%
TGGAGCCACATTCCATTGTT+TGG + chr2_3:11444428-11444447 Msa0278420:five_prime_UTR 45.0%
TGGAATGGAATGGAGTGTGA+TGG + chr2_3:11444467-11444486 Msa0278420:five_prime_UTR 45.0%
CCATTGGATACACCCCAAAT+TGG - chr2_3:11444540-11444559 None:intergenic 45.0%
! CCAATTTGGGGTGTATCCAA+TGG + chr2_3:11444537-11444556 Msa0278420:five_prime_UTR 45.0%
TTGGGGTGTATCCAATGGAA+TGG + chr2_3:11444542-11444561 Msa0278420:five_prime_UTR 45.0%
! AGCGCGCCATTGAAATTTTG+GGG - chr2_3:11444613-11444632 None:intergenic 45.0%
! GAAGCGCGCCATTGAAATTT+TGG - chr2_3:11444615-11444634 None:intergenic 45.0%
GCAGTGAACACAATGAGAGT+TGG - chr2_3:11444689-11444708 None:intergenic 45.0%
! ATTCACGTGAGGCTAGTCAA+AGG - chr2_3:11445108-11445127 None:intergenic 45.0%
GAAACAGCTTGATTCACGTG+AGG - chr2_3:11445119-11445138 None:intergenic 45.0%
TGCACCTTATTACGAGATCG+CGG + chr2_3:11445723-11445742 Msa0278420:intron 45.0%
GTGGACTTACACATACACGA+AGG + chr2_3:11445745-11445764 Msa0278420:intron 45.0%
AGATGCTTTGATAGAGGTGG+AGG + chr2_3:11445893-11445912 Msa0278420:intron 45.0%
GATGCTTTGATAGAGGTGGA+GGG + chr2_3:11445894-11445913 Msa0278420:intron 45.0%
ATGCTTTGATAGAGGTGGAG+GGG + chr2_3:11445895-11445914 Msa0278420:intron 45.0%
TGATGGTACACAAGTTCCTC+CGG + chr2_3:11445935-11445954 Msa0278420:intron 45.0%
TATCTAGGTGCAAGATGTGC+TGG - chr2_3:11446119-11446138 None:intergenic 45.0%
CATCTTGCACCTAGATATCG+TGG + chr2_3:11446122-11446141 Msa0278420:intron 45.0%
! GCAGCCAAGACATTTTGTGT+TGG - chr2_3:11446161-11446180 None:intergenic 45.0%
TATGTCTTGGTTGGATGGGA+AGG + chr2_3:11446206-11446225 Msa0278420:intron 45.0%
TCACACCTTATAGGGGAGAA+AGG + chr2_3:11446424-11446443 Msa0278420:intron 45.0%
TGGTACCTTTCTCCCCTATA+AGG - chr2_3:11446432-11446451 None:intergenic 45.0%
ACTTCAACTGAGCCCACATT+TGG + chr2_3:11446579-11446598 Msa0278420:intron 45.0%
AGTGGAGAGCCAATTAGAGA+TGG + chr2_3:11446771-11446790 Msa0278420:intron 45.0%
TTGGACTACTGCTATGGATG+GGG + chr2_3:11447075-11447094 Msa0278420:CDS 45.0%
AAGCGCTATGGACAACATTC+TGG + chr2_3:11447162-11447181 Msa0278420:CDS 45.0%
! ATGGTTTGAGTGGATTCGGA+TGG + chr2_3:11447293-11447312 Msa0278420:CDS 45.0%
! TGGTTTGAGTGGATTCGGAT+GGG + chr2_3:11447294-11447313 Msa0278420:CDS 45.0%
GACTGCTGAAGATGACGTTT+GGG + chr2_3:11447336-11447355 Msa0278420:CDS 45.0%
AAAAACCCGAAGCTGCTGAA+TGG + chr2_3:11447467-11447486 Msa0278420:CDS 45.0%
CAAGAAAGGCTGCAAATAGC+AGG + chr2_3:11447587-11447606 Msa0278420:CDS 45.0%
ATTCCAGCAGTTCTCCGAAA+AGG + chr2_3:11447701-11447720 Msa0278420:CDS 45.0%
!! CAGAGTAAGAGTGCTAATGG+TGG + chr2_3:11447877-11447896 Msa0278420:CDS 45.0%
GGAGCTGTCATTGTGTTATG+AGG + chr2_3:11448207-11448226 Msa0278420:three_prime_UTR 45.0%
TATGAGGAAGGTCTGTTGTC+TGG + chr2_3:11448223-11448242 Msa0278420:three_prime_UTR 45.0%
ATGAGGAAGGTCTGTTGTCT+GGG + chr2_3:11448224-11448243 Msa0278420:three_prime_UTR 45.0%
! CTGTTGTCTGGGTTTGGTAA+TGG + chr2_3:11448235-11448254 Msa0278420:three_prime_UTR 45.0%
GCTCCCAACATCAAAACAGT+AGG - chr2_3:11448275-11448294 None:intergenic 45.0%
! GGGAGCCTGTGTAATTTTGT+AGG + chr2_3:11448289-11448308 Msa0278420:three_prime_UTR 45.0%
!! GGCTGTTTCTGTGCTTTGTT+TGG + chr2_3:11448310-11448329 Msa0278420:three_prime_UTR 45.0%
! AGGTTGGAAGTCTGCGTTTT+TGG + chr2_3:11448351-11448370 Msa0278420:three_prime_UTR 45.0%
! GGTTGGAAGTCTGCGTTTTT+GGG + chr2_3:11448352-11448371 Msa0278420:three_prime_UTR 45.0%
! GTTGGAAGTCTGCGTTTTTG+GGG + chr2_3:11448353-11448372 Msa0278420:three_prime_UTR 45.0%
!! TTGGAAGTCTGCGTTTTTGG+GGG + chr2_3:11448354-11448373 Msa0278420:three_prime_UTR 45.0%
!! AAAAGAATAATAATTATTAA+CGG - chr2_3:11442775-11442794 None:intergenic 5.0%
! TTCCCAGAAGGGTGATGATG+GGG + chr2_3:11443011-11443030 Msa0278420:five_prime_UTR 50.0%
GTCTGAGAAGTTGGGGTTGT+CGG + chr2_3:11443312-11443331 Msa0278420:five_prime_UTR 50.0%
CGGATCGACAGTTACAGATG+TGG + chr2_3:11443332-11443351 Msa0278420:five_prime_UTR 50.0%
!!! AGATGTGGTTTTGTCACCGG+AGG + chr2_3:11443347-11443366 Msa0278420:five_prime_UTR 50.0%
CCGGAGGTTGAAAGACAAGA+AGG + chr2_3:11443363-11443382 Msa0278420:five_prime_UTR 50.0%
AAGGCTCCAGAATCCAGCAA+AGG - chr2_3:11443421-11443440 None:intergenic 50.0%
AAAAACTCCGTCCGGGCAAA+CGG - chr2_3:11443482-11443501 None:intergenic 50.0%
CACAGCCATTAGTGACCAAC+TGG + chr2_3:11443965-11443984 Msa0278420:five_prime_UTR 50.0%
GACTCCCAGTTGGTCACTAA+TGG - chr2_3:11443973-11443992 None:intergenic 50.0%
GCAAATCAAGGACTCCCAGT+TGG - chr2_3:11443983-11444002 None:intergenic 50.0%
TCCGCTAAACAACTGTGTGC+CGG + chr2_3:11444221-11444240 Msa0278420:five_prime_UTR 50.0%
ACCGGCACACAGTTGTTTAG+CGG - chr2_3:11444225-11444244 None:intergenic 50.0%
!! TTTGGATTGGTGGTGAGTGG+TGG + chr2_3:11444383-11444402 Msa0278420:five_prime_UTR 50.0%
!! ATTGGTGGTGAGTGGTGGAA+TGG + chr2_3:11444388-11444407 Msa0278420:five_prime_UTR 50.0%
! TGGTGAGTGGTGGAATGGAA+TGG + chr2_3:11444393-11444412 Msa0278420:five_prime_UTR 50.0%
ACACCCCAAATTGGGTGGAA+TGG - chr2_3:11444531-11444550 None:intergenic 50.0%
TGGATACACCCCAAATTGGG+TGG - chr2_3:11444536-11444555 None:intergenic 50.0%
ACCTTATTACGAGATCGCGG+TGG + chr2_3:11445726-11445745 Msa0278420:intron 50.0%
TCCACCGCGATCTCGTAATA+AGG - chr2_3:11445730-11445749 None:intergenic 50.0%
!! TACACGAAGGGCGTCTATTG+AGG + chr2_3:11445758-11445777 Msa0278420:intron 50.0%
GGAGGAACTTGTGTACCATC+AGG - chr2_3:11445936-11445955 None:intergenic 50.0%
AATTCACGAGGGTTTCGAGG+TGG - chr2_3:11446477-11446496 None:intergenic 50.0%
GCCAATTAGAGATGGCGTTG+CGG + chr2_3:11446779-11446798 Msa0278420:intron 50.0%
CCAATTAGAGATGGCGTTGC+GGG + chr2_3:11446780-11446799 Msa0278420:intron 50.0%
GGACTGCTGAAGATGACGTT+TGG + chr2_3:11447335-11447354 Msa0278420:CDS 50.0%
! CTGAAGATGACGTTTGGGAC+AGG + chr2_3:11447341-11447360 Msa0278420:CDS 50.0%
! CGTTTGGGACAGGCTAATTG+AGG + chr2_3:11447351-11447370 Msa0278420:CDS 50.0%
TGTCTCCATTCAGCAGCTTC+GGG - chr2_3:11447475-11447494 None:intergenic 50.0%
GTGTCTCCATTCAGCAGCTT+CGG - chr2_3:11447476-11447495 None:intergenic 50.0%
GCTGCAAATAGCAGGAGTCA+TGG + chr2_3:11447595-11447614 Msa0278420:CDS 50.0%
!! GAGTCATGGTGCTACCATAG+AGG + chr2_3:11447609-11447628 Msa0278420:CDS 50.0%
GAAGGTCTGTTGTCTGGGTT+TGG + chr2_3:11448229-11448248 Msa0278420:three_prime_UTR 50.0%
!! TCCCAGAAGGGTGATGATGG+GGG + chr2_3:11443012-11443031 Msa0278420:five_prime_UTR 55.0%
ACCCCCATCATCACCCTTCT+GGG - chr2_3:11443016-11443035 None:intergenic 55.0%
! ACCGGTTAAGAAGGCGCGAA+AGG + chr2_3:11443390-11443409 Msa0278420:five_prime_UTR 55.0%
GCCTTTCGCGCCTTCTTAAC+CGG - chr2_3:11443394-11443413 None:intergenic 55.0%
GCTCCAGAATCCAGCAAAGG+TGG - chr2_3:11443418-11443437 None:intergenic 55.0%
TATGGATCCGGGTCAGGTTC+TGG + chr2_3:11443449-11443468 Msa0278420:five_prime_UTR 55.0%
ATGGATCCGGGTCAGGTTCT+GGG + chr2_3:11443450-11443469 Msa0278420:five_prime_UTR 55.0%
AAAACTCCGTCCGGGCAAAC+GGG - chr2_3:11443481-11443500 None:intergenic 55.0%
CCCGCAACGCCATCTCTAAT+TGG - chr2_3:11446783-11446802 None:intergenic 55.0%
ATGGCGTTGCGGGTTCTATG+TGG + chr2_3:11446790-11446809 Msa0278420:intron 55.0%
! AGGCCTTTTCGGAGAACTGC+TGG - chr2_3:11447707-11447726 None:intergenic 55.0%
CAGCTTCTGCTGTAGCAGGT+TGG + chr2_3:11448335-11448354 Msa0278420:three_prime_UTR 55.0%
CACCCCCATCATCACCCTTC+TGG - chr2_3:11443017-11443036 None:intergenic 60.0%
GCGCCACCTTTGCTGGATTC+TGG + chr2_3:11443412-11443431 Msa0278420:five_prime_UTR 60.0%
GCTAGACCCAGAACCTGACC+CGG - chr2_3:11443459-11443478 None:intergenic 60.0%
GGAGCAGCTTCTGCTGTAGC+AGG + chr2_3:11448331-11448350 Msa0278420:three_prime_UTR 60.0%
!! GCGAAAGGCGCCACCTTTGC+TGG + chr2_3:11443405-11443424 Msa0278420:five_prime_UTR 65.0%
CTGGGTCTAGCCCGTTTGCC+CGG + chr2_3:11443468-11443487 Msa0278420:five_prime_UTR 65.0%
GTCTAGCCCGTTTGCCCGGA+CGG + chr2_3:11443472-11443491 Msa0278420:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 11442752 11448550 11442752 ID=Msa0278420;Name=Msa0278420
chr2_3 mRNA 11442752 11448550 11442752 ID=Msa0278420-mRNA-1;Parent=Msa0278420;Name=Msa0278420-mRNA-1;_AED=0.22;_eAED=0.22;_QI=1818|1|1|1|0.4|0.5|6|400|317
chr2_3 exon 11442752 11443165 11442752 ID=Msa0278420-mRNA-1:exon:5146;Parent=Msa0278420-mRNA-1
chr2_3 exon 11443275 11444060 11443275 ID=Msa0278420-mRNA-1:exon:5147;Parent=Msa0278420-mRNA-1
chr2_3 exon 11444137 11444746 11444137 ID=Msa0278420-mRNA-1:exon:5148;Parent=Msa0278420-mRNA-1
chr2_3 exon 11447014 11447372 11447014 ID=Msa0278420-mRNA-1:exon:5149;Parent=Msa0278420-mRNA-1
chr2_3 exon 11447466 11448070 11447466 ID=Msa0278420-mRNA-1:exon:5150;Parent=Msa0278420-mRNA-1
chr2_3 exon 11448153 11448550 11448153 ID=Msa0278420-mRNA-1:exon:5151;Parent=Msa0278420-mRNA-1
chr2_3 five_prime_UTR 11442752 11443165 11442752 ID=Msa0278420-mRNA-1:five_prime_utr;Parent=Msa0278420-mRNA-1
chr2_3 five_prime_UTR 11443275 11444060 11443275 ID=Msa0278420-mRNA-1:five_prime_utr;Parent=Msa0278420-mRNA-1
chr2_3 five_prime_UTR 11444137 11444746 11444137 ID=Msa0278420-mRNA-1:five_prime_utr;Parent=Msa0278420-mRNA-1
chr2_3 five_prime_UTR 11447014 11447021 11447014 ID=Msa0278420-mRNA-1:five_prime_utr;Parent=Msa0278420-mRNA-1
chr2_3 CDS 11447022 11447372 11447022 ID=Msa0278420-mRNA-1:cds;Parent=Msa0278420-mRNA-1
chr2_3 CDS 11447466 11448068 11447466 ID=Msa0278420-mRNA-1:cds;Parent=Msa0278420-mRNA-1
chr2_3 three_prime_UTR 11448069 11448070 11448069 ID=Msa0278420-mRNA-1:three_prime_utr;Parent=Msa0278420-mRNA-1
chr2_3 three_prime_UTR 11448153 11448550 11448153 ID=Msa0278420-mRNA-1:three_prime_utr;Parent=Msa0278420-mRNA-1
Gene Sequence

>Msa0278420

ATGGATGCAAATTCAAAGAGGCCAAGGAAATCAAAAGGCCTAGAAACATGCAATTGGACTACTGCTATGGATGGGGTTTTGATTGATGCATATTTGCATCAACTAACAATGGGAAATAAAAATGGAAATAGTATGACATCAAGCGCTATGGACAACATTCTGGAAGAGTTGAAGAATCACTTCCCGGACAAACCAATTTCTAAAGAAAAGATAAAAGATCACATGAAAAACATCAAAGCAAAGTGGACTCCTTGTTATGACCTTTTTCAGAATGGTTTGAGTGGATTCGGATGGGATTCTACGACAAATATGTGGACTGCTGAAGATGACGTTTGGGACAGGCTAATTGAGAAAAAACCCGAAGCTGCTGAATGGAGACACAAGCCTATACCGTTTTATTATAAATTAGCCAAACTTTTTGGAAAAGATCGAGCAACAGGAGATCATGAAGATACAGGCTTTGAAATGAGAGCAAGAAAGGCTGCAAATAGCAGGAGTCATGGTGCTACCATAGAGGAAATAGATCATTTGGTTGAAACCAATGAAGTTATTTTGGAGAGGTTTGATGTTGATGACGAAATATATCATTCCAGCAGTTCTCCGAAAAGGCCTTCTATTTCTACTTCTCAAGATGTGTCATCATCTAGGACTAAAAAACGAGCAAAAAAGGTTGTTGAAGATGATACAAGCATGAGAGAAATTTCTAAGACTTTAAAGACAATGGTTGAGGTGTTTAAAATGAGCTCAGAGGAGTTGGTCAAACAGAGTAAGAGTGCTAATGGTGGAGATATTTGGGCTGAATTAGTCGAAATTGGTGTTGACCCAGCTTCCTTGCCTAAAGTATACATGTACCTTGTTAAGAATGATGATGCATTGAAAGCTTTTAATGGAATTCCAATTGATAACCGCAAGGAAATGTTACATCTCATTGTGCCCGACTATCCTTTTTATTAA
Protein sequence

>Msa0278420

MDANSKRPRKSKGLETCNWTTAMDGVLIDAYLHQLTMGNKNGNSMTSSAMDNILEELKNHFPDKPISKEKIKDHMKNIKAKWTPCYDLFQNGLSGFGWDSTTNMWTAEDDVWDRLIEKKPEAAEWRHKPIPFYYKLAKLFGKDRATGDHEDTGFEMRARKAANSRSHGATIEEIDHLVETNEVILERFDVDDEIYHSSSSPKRPSISTSQDVSSSRTKKRAKKVVEDDTSMREISKTLKTMVEVFKMSSEELVKQSKSANGGDIWAELVEIGVDPASLPKVYMYLVKNDDALKAFNGIPIDNRKEMLHLIVPDYPFY*