AlfalfaGEDB | Msa0280190

M. sativa cultivar zhongmu-4 / Msa0280190

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280190	XP_003621847.1	88.591	447	26	5	1	422	10	456	0.0	784

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280190	sp\|P0C043\|PP318_ARATH	45.946	444	214	6	1	419	16	458	1.22e-135	402

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280190	G7KWS6	88.591	447	26	5	1	422	10	456	0.0	784

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0280190	Msa1412530	0.812740	3.642342e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280190	MtrunA17_Chr7g0223061	90.672	268	16	3	164	422	1	268	1.43e-171	483
Msa0280190	MtrunA17_Chr7g0223061	23.176	233	150	6	39	251	1	224	8.69e-16	77.4
Msa0280190	MtrunA17_Chr7g0223051	86.429	140	11	1	1	132	10	149	1.17e-80	247
Msa0280190	MtrunA17_Chr4g0060641	29.539	369	235	8	2	346	325	692	6.80e-47	173
Msa0280190	MtrunA17_Chr4g0060641	28.634	454	271	10	2	419	255	691	7.79e-47	173
Msa0280190	MtrunA17_Chr4g0060641	28.508	449	275	11	35	442	148	591	2.32e-44	166
Msa0280190	MtrunA17_Chr4g0060641	27.907	301	193	6	2	281	430	727	5.32e-29	120
Msa0280190	MtrunA17_Chr4g0060641	25.000	348	218	6	83	416	99	417	3.59e-22	100
Msa0280190	MtrunA17_Chr4g0060641	25.000	384	221	11	52	404	23	370	1.08e-18	89.4
Msa0280190	MtrunA17_Chr6g0482771	29.500	400	247	10	5	371	168	565	3.16e-46	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0280190	AT5G46680.1	43.820	445	223	7	1	419	16	459	1.19e-127	379
Msa0280190	AT5G55840.2	30.673	401	250	7	2	374	307	707	3.64e-51	187
Msa0280190	AT5G55840.2	24.057	424	273	6	2	404	202	597	1.67e-33	135
Msa0280190	AT5G55840.2	23.762	404	235	10	30	408	162	517	1.19e-25	111
Msa0280190	AT5G55840.2	20.296	473	311	9	5	412	450	921	2.98e-23	103
Msa0280190	AT5G55840.2	23.111	450	313	11	2	420	657	1104	1.20e-22	102
Msa0280190	AT5G55840.2	21.315	502	296	6	2	404	552	1053	2.49e-22	101
Msa0280190	AT5G55840.2	25.175	286	201	4	137	409	177	462	3.09e-19	91.7
Msa0280190	AT5G55840.2	25.547	274	175	4	168	412	122	395	1.07e-16	84.0
Msa0280190	AT5G55840.1	30.673	401	250	7	2	374	307	707	3.64e-51	187

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Find 106 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACACTTCATAACCG+TGG	0.684385	2_3:+14624443	None:intergenic
AAAACACCGTTTGCTTCCTC+CGG	0.457434	2_3:+14624726	None:intergenic
AAATGCTTCAATCAGGAATA+AGG	0.333272	2_3:-14624803	Msa0280190:CDS
AACGCACCAATCGAGCCAGC+CGG	0.588713	2_3:+14623758	None:intergenic
AACTCTATTCTTGATTGTTT+GGG	0.302813	2_3:-14624024	Msa0280190:CDS
AATAGAAGCAACCAAAAGCT+TGG	0.487015	2_3:+14623882	None:intergenic
AATCTGGCTTTCAGATCTTA+AGG	0.325316	2_3:-14623858	Msa0280190:CDS
AATGATTAATGGGTTGTGTA+AGG	0.551872	2_3:-14624544	Msa0280190:CDS
AATTAAGTCGAAAATCCGGC+TGG	0.609918	2_3:-14623773	Msa0280190:CDS
ACACACATGATTATAATCCA+TGG	0.543462	2_3:-14624135	Msa0280190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCATCTATTAAAACGGTTT+CGG	+	chr2_3:14622421-14622440	None:intergenic	30.0%
ACTTACAACACATTAATCGA+TGG	-	chr2_3:14622471-14622490	Msa0280190:CDS	30.0%
TCCTACAATTCATTAATCTC+CGG	-	chr2_3:14622576-14622595	Msa0280190:CDS	30.0%
TTTGATGAAATGCTTCAATC+AGG	-	chr2_3:14622639-14622658	Msa0280190:intron	30.0%
AAATGCTTCAATCAGGAATA+AGG	-	chr2_3:14622646-14622665	Msa0280190:intron	30.0%
ATATTATAACTCCACACATC+AGG	+	chr2_3:14622672-14622691	None:intergenic	30.0%
GTATTATAAGAAGCAAGATC+CGG	+	chr2_3:14623200-14623219	None:intergenic	30.0%
ACACACATGATTATAATCCA+TGG	-	chr2_3:14623314-14623333	Msa0280190:intron	30.0%
TTTGGATTACATGAACACAT+TGG	-	chr2_3:14623376-14623395	Msa0280190:intron	30.0%
TTGGATTACATGAACACATT+GGG	-	chr2_3:14623377-14623396	Msa0280190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	14622369	14625102	14622369	ID=Msa0280190;Name=Msa0280190
chr2_3	mRNA	14622369	14625102	14622369	ID=Msa0280190-mRNA-1;Parent=Msa0280190;Name=Msa0280190-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|1\|0\|0\|8\|0\|476
chr2_3	exon	14624869	14625102	14624869	ID=Msa0280190-mRNA-1:exon:6225;Parent=Msa0280190-mRNA-1
chr2_3	exon	14624674	14624844	14624674	ID=Msa0280190-mRNA-1:exon:6224;Parent=Msa0280190-mRNA-1
chr2_3	exon	14624453	14624649	14624453	ID=Msa0280190-mRNA-1:exon:6223;Parent=Msa0280190-mRNA-1
chr2_3	exon	14624240	14624440	14624240	ID=Msa0280190-mRNA-1:exon:6222;Parent=Msa0280190-mRNA-1
chr2_3	exon	14623999	14624230	14623999	ID=Msa0280190-mRNA-1:exon:6221;Parent=Msa0280190-mRNA-1
chr2_3	exon	14623765	14623992	14623765	ID=Msa0280190-mRNA-1:exon:6220;Parent=Msa0280190-mRNA-1
chr2_3	exon	14622568	14622599	14622568	ID=Msa0280190-mRNA-1:exon:6219;Parent=Msa0280190-mRNA-1
chr2_3	exon	14622369	14622504	14622369	ID=Msa0280190-mRNA-1:exon:6218;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14624869	14625102	14624869	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14624674	14624844	14624674	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14624453	14624649	14624453	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14624240	14624440	14624240	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14623999	14624230	14623999	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14623765	14623992	14623765	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14622568	14622599	14622568	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1
chr2_3	CDS	14622369	14622504	14622369	ID=Msa0280190-mRNA-1:cds;Parent=Msa0280190-mRNA-1

Gene Sequence

>Msa0280190

ATGAACATAACCATATCCACAATGTGCAAATCAAACCAAATCGCAAAAGCCGAAACCGTTTTAATAGATGGAATCAAATTAGGACTAAACCCTTACACTATCACTTACAACACATTAATCGATGGCTATTGTCGTTTCGTCGGCATCGACGCTGCTTACAACATTCTCAACAGAATGAAAGAAGCTGGAATTAATCCTGATGTTGTTTCCTACAATTCATTAATCTCCGGTGCGTCACTCCATCTGTTTGATGAAATGCTTCAATCAGGAATAAGGCCTGATGTGTGGAGTTATAATATTGTAATGCATTGTTTGTTTAGGTTAGGGAAACCGGAGGAAGCAAACGGTGTTTTTCAGGATATTGTTGAGAGAGGGGAGATTTATCCGAGTATGGCGAGTTATAATAACGGTTATGTGAATAACGCGTTGATGTTGTTTAGGAATTTGCAGCGTCGTGGATTTGTTCTGGAGGTTTTGACTTATAATGCAATGATTAATGGGTTGTGTAAGGCGAGGAGGTTAGCGGATGCAAGGAGGGTGCTGAAGGAGTTTTGCGATTTTGGTTTTGAGCCGAATGCGATTACCTATACCACGGTTATGAAGTGTGGGAGGTTGGAGCAAGGGTTGGAGATTTTGTCGGAGATGAGGAGGAAAGGTTTTACGTTTGATGGGTTTGCGTATTGTACGGTGGTTGCTGCGTTGGTGAAGACGGGGAGGATTGAAGAAGAGGATGAGATTGCTGAGAAGATGATGAGTAATGGTTTGGTGCCGGATCTTGCTTCTTATAATACAATGATAAATGTGCAAGGGAGGTTTGATGAGGCGTTGAGGTTGGTGGATGAGATTGAGAAACAAGGAATGAAATGTGATCAGTATACACACATGATTATAATCCATGGATTATGTAAGGTTGGCGATTTTGCAGGTGCCGAGAAGCATTTGGATTACATGAACACATTGGGTTTTGGTTTTAATTTGGTGGCATTTAACTCTATTCTTGATTGTTTGGGTAAAGCTAGTGATATTGATAAAGCAGTTTTTGATACTATGGAGGTTAAAGATTCGTTCACTTATACTATCTTGCTGCACAACCTTTGCAGGGCTAAGAAGTTCCGAATTGCTTCCAAGCTTTTGGTTGCTTCTATTAAATCTGGCTTTCAGATCTTAAGGGCTACTCAAAGAGCTGTTATTGATGGTCTCACTACCTCTGGTCTTGTCTATGAAGCCAGAAAAATTAAGTCGAAAATCCGGCTGGCTCGATTGGTGTTGTTCTCGAAAAAGGGTGAGTTGGAAGGGGAGTCTGATGCTCTAGCAGCCCTCAGGGGGTACAGCAATATGAAGCTTTATGGAAAGACATTGCAAATTGAGTTTGTTGGAACAAGTTTGGTTGCCCCCGCTCCAACAAAATTACCAAAGTTTTCTATTATTTGA

Protein sequence

>Msa0280190

MNITISTMCKSNQIAKAETVLIDGIKLGLNPYTITYNTLIDGYCRFVGIDAAYNILNRMKEAGINPDVVSYNSLISGASLHLFDEMLQSGIRPDVWSYNIVMHCLFRLGKPEEANGVFQDIVERGEIYPSMASYNNGYVNNALMLFRNLQRRGFVLEVLTYNAMINGLCKARRLADARRVLKEFCDFGFEPNAITYTTVMKCGRLEQGLEILSEMRRKGFTFDGFAYCTVVAALVKTGRIEEEDEIAEKMMSNGLVPDLASYNTMINVQGRFDEALRLVDEIEKQGMKCDQYTHMIIIHGLCKVGDFAGAEKHLDYMNTLGFGFNLVAFNSILDCLGKASDIDKAVFDTMEVKDSFTYTILLHNLCRAKKFRIASKLLVASIKSGFQILRATQRAVIDGLTTSGLVYEARKIKSKIRLARLVLFSKKGELEGESDALAALRGYSNMKLYGKTLQIEFVGTSLVAPAPTKLPKFSII*