Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283830 | XP_003595171.1 | 91.440 | 257 | 6 | 2 | 1 | 243 | 1 | 255 | 5.18e-155 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283830 | sp|O22607|MSI4_ARATH | 74.409 | 254 | 43 | 2 | 3 | 242 | 15 | 260 | 9.55e-130 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0283800 | Msa0283830 | 0.888757 | 4.446615e-73 | -8.615850e-47 |
| Msa0283830 | Msa0321920 | 0.825745 | 3.963745e-54 | -8.615850e-47 |
| Msa0283830 | Msa1186520 | 0.817279 | 3.580410e-52 | -8.615850e-47 |
| Msa0283830 | Msa1443600 | 0.805374 | 1.377023e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283830 | MtrunA17_Chr2g0299271 | 91.440 | 257 | 6 | 2 | 1 | 243 | 1 | 255 | 4.76e-159 | 450 |
| Msa0283830 | MtrunA17_Chr2g0330271 | 72.727 | 198 | 39 | 2 | 59 | 241 | 16 | 213 | 2.33e-101 | 302 |
| Msa0283830 | MtrunA17_Chr4g0052291 | 32.984 | 191 | 102 | 7 | 64 | 231 | 21 | 208 | 1.47e-19 | 86.7 |
| Msa0283830 | MtrunA17_Chr4g0036951 | 28.415 | 183 | 109 | 3 | 64 | 231 | 17 | 192 | 9.62e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0283830 | AT2G19520.1 | 74.409 | 254 | 43 | 2 | 3 | 242 | 15 | 260 | 9.71e-131 | 379 |
| Msa0283830 | AT4G29730.3 | 66.529 | 242 | 72 | 5 | 6 | 242 | 3 | 240 | 6.56e-109 | 321 |
| Msa0283830 | AT4G29730.2 | 66.529 | 242 | 72 | 5 | 6 | 242 | 3 | 240 | 6.56e-109 | 321 |
| Msa0283830 | AT4G29730.1 | 66.529 | 242 | 72 | 5 | 6 | 242 | 3 | 240 | 4.04e-108 | 320 |
| Msa0283830 | AT5G58230.1 | 33.333 | 195 | 104 | 6 | 60 | 231 | 17 | 208 | 1.44e-22 | 95.5 |
| Msa0283830 | AT2G16780.1 | 30.303 | 198 | 115 | 7 | 52 | 231 | 6 | 198 | 1.97e-19 | 86.7 |
| Msa0283830 | AT4G35050.1 | 28.643 | 199 | 117 | 6 | 60 | 241 | 15 | 205 | 1.03e-16 | 79.0 |
Find 53 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCATCCCTATGTGCTTTC+TGG | 0.148634 | 2_3:-21506791 | Msa0283830:CDS |
| AACTGCAGGTGAACAGAATT+AGG | 0.201591 | 2_3:-21507546 | Msa0283830:intron |
| TTCTTCACTGCGCCGGTTGA+TGG | 0.237649 | 2_3:+21509613 | None:intergenic |
| TTGTTCCTGTTCTTTATGAT+TGG | 0.288898 | 2_3:-21509417 | Msa0283830:CDS |
| CGAATATCAGGTTCTCATTT+GGG | 0.289930 | 2_3:-21507383 | Msa0283830:intron |
| TTTGGCCTTCTCTCTCTTGC+CGG | 0.315265 | 2_3:-21509375 | Msa0283830:intron |
| TTCTTGTCTTCCTTAGGTTT+AGG | 0.325143 | 2_3:+21509568 | None:intergenic |
| TCGAATATCAGGTTCTCATT+TGG | 0.327566 | 2_3:-21507384 | Msa0283830:intron |
| TCGTCAGAGGCTTTATCTTT+CGG | 0.354547 | 2_3:-21508767 | Msa0283830:CDS |
| TTCGCAATCACCAGAGTATT+CGG | 0.385329 | 2_3:+21508495 | None:intergenic |
| TCTTCTTTCTTGTCTTCCTT+AGG | 0.398125 | 2_3:+21509562 | None:intergenic |
| TCAAATAGACGTACCAGATC+TGG | 0.403811 | 2_3:+21507307 | None:intergenic |
| CTGTAGCAGCAGATGTTATA+TGG | 0.406310 | 2_3:+21506609 | None:intergenic |
| GTCTTGTACTTCTTGACAAA+TGG | 0.411539 | 2_3:+21508037 | None:intergenic |
| CTCCTTCTTCTTCACTGCGC+CGG | 0.419607 | 2_3:+21509606 | None:intergenic |
| TCGCTAACCATAACCTCGTT+TGG | 0.419771 | 2_3:-21509393 | Msa0283830:CDS |
| GAGAAGGCCAAACGAGGTTA+TGG | 0.420013 | 2_3:+21509386 | None:intergenic |
| CAGAGAGAGTGTGAGAGAAA+TGG | 0.424169 | 2_3:-21509644 | Msa0283830:exon |
| TATGAAATTTATACCTCGCC+TGG | 0.449337 | 2_3:+21508004 | None:intergenic |
| GTGGGGTCCTCAGCTTGAAC+AGG | 0.450211 | 2_3:-21508803 | Msa0283830:CDS |
| CCAAGGACAGCATGACGGTT+AGG | 0.459165 | 2_3:+21507346 | None:intergenic |
| CCTAACCGTCATGCTGTCCT+TGG | 0.461359 | 2_3:-21507346 | Msa0283830:CDS |
| ACTGCAGGTGAACAGAATTA+GGG | 0.472069 | 2_3:-21507545 | Msa0283830:intron |
| GAGCAAACTCTGCATTATCT+TGG | 0.475826 | 2_3:+21506828 | None:intergenic |
| GCGAGCCAATCATAAAGAAC+AGG | 0.476414 | 2_3:+21509412 | None:intergenic |
| GAGGCTTTATCTTTCGGAGC+AGG | 0.480425 | 2_3:-21508761 | Msa0283830:intron |
| TACAAACTCTCGTCCAGATC+TGG | 0.484345 | 2_3:-21507320 | Msa0283830:intron |
| ATGGAGACACCACCATCAAC+CGG | 0.492633 | 2_3:-21509625 | Msa0283830:CDS |
| GCCACAAAATTCTAAGATTG+TGG | 0.493140 | 2_3:-21507518 | Msa0283830:CDS |
| GAAAGCACATAGGGATGAGT+AGG | 0.518930 | 2_3:+21506794 | None:intergenic |
| TTGATGAGAAGTACACTCAA+TGG | 0.524523 | 2_3:-21509447 | Msa0283830:CDS |
| CATCCCTATGTGCTTTCTGG+AGG | 0.537406 | 2_3:-21506788 | Msa0283830:intron |
| ATCAGGGCTGTCTGTGTGAG+TGG | 0.558313 | 2_3:+21507495 | None:intergenic |
| CAACCTCCAGAAAGCACATA+GGG | 0.558501 | 2_3:+21506785 | None:intergenic |
| AAGACAAAACAGTCGTGTTG+TGG | 0.560573 | 2_3:-21506643 | Msa0283830:CDS |
| TTCACTGCGCCGGTTGATGG+TGG | 0.564282 | 2_3:+21509616 | None:intergenic |
| GACACCGAAAGAATCGAAGA+AGG | 0.577562 | 2_3:-21509518 | Msa0283830:CDS |
| TACAAGACTATCATACATCC+AGG | 0.578483 | 2_3:-21508022 | Msa0283830:CDS |
| AGGACGCAAACCTAAACCTA+AGG | 0.580952 | 2_3:-21509578 | Msa0283830:CDS |
| CCAACCTCCAGAAAGCACAT+AGG | 0.581090 | 2_3:+21506784 | None:intergenic |
| CCTAACCGGCAAGAGAGAGA+AGG | 0.596594 | 2_3:+21509370 | None:intergenic |
| GACGAGAGTTTGTAGCTCCA+AGG | 0.607337 | 2_3:+21507329 | None:intergenic |
| AACCGGCGCAGTGAAGAAGA+AGG | 0.613935 | 2_3:-21509608 | Msa0283830:CDS |
| GTGAAGAAGAAGGAGACAAG+AGG | 0.617029 | 2_3:-21509598 | Msa0283830:CDS |
| AAACACTTCAAATTTCACAA+TGG | 0.630182 | 2_3:+21509688 | None:intergenic |
| TGGAAGTGTTCCGAATACTC+TGG | 0.631230 | 2_3:-21508505 | Msa0283830:CDS |
| AAAGCACATAGGGATGAGTA+GGG | 0.634618 | 2_3:+21506795 | None:intergenic |
| TAAGTAGCCTGTTCAAGCTG+AGG | 0.637076 | 2_3:+21508796 | None:intergenic |
| TAGCTCCAAGGACAGCATGA+CGG | 0.640688 | 2_3:+21507341 | None:intergenic |
| GACTATCATACATCCAGGCG+AGG | 0.665684 | 2_3:-21508017 | Msa0283830:intron |
| AAGAGAGAGAAGGCCAAACG+AGG | 0.676994 | 2_3:+21509380 | None:intergenic |
| TCTGGTGATTGCGAATTGTG+AGG | 0.681420 | 2_3:-21508487 | Msa0283830:intron |
| CTACTTACAAGAATCGTCAG+AGG | 0.686539 | 2_3:-21508780 | Msa0283830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATTTTGTTAAATTTT+TGG | - | chr2_3:21506953-21506972 | Msa0283830:intron | 10.0% |
| !!! | AAATTTTTGGTTTTATTTGA+TGG | - | chr2_3:21506966-21506985 | Msa0283830:intron | 15.0% |
| !!! | TTTTGTTTGAAGTTTTTTTT+TGG | - | chr2_3:21507099-21507118 | Msa0283830:intron | 15.0% |
| !!! | TTTGTTTTTGTGAAAATTTT+AGG | - | chr2_3:21507232-21507251 | Msa0283830:intron | 15.0% |
| !!! | TTTTGTTGTAATGATTTTTT+AGG | - | chr2_3:21507387-21507406 | Msa0283830:intron | 15.0% |
| !!! | TTTGTTGTAATGATTTTTTA+GGG | - | chr2_3:21507388-21507407 | Msa0283830:intron | 15.0% |
| !!! | TTTTTAGGGTTTTTTTTTTT+TGG | - | chr2_3:21507402-21507421 | Msa0283830:intron | 15.0% |
| !! | AAAAACCAAAAAATCAAAAT+GGG | + | chr2_3:21507755-21507774 | None:intergenic | 15.0% |
| !! | ATTTATCTTTGAATAATTGT+GGG | + | chr2_3:21508407-21508426 | None:intergenic | 15.0% |
| !! | ATATATAAACCATTAATTAC+AGG | + | chr2_3:21508661-21508680 | None:intergenic | 15.0% |
| !! | GTAATTAATGGTTTATATAT+TGG | - | chr2_3:21508661-21508680 | Msa0283830:intron | 15.0% |
| !!! | TTTCTAAAGAATAAAAACAA+TGG | + | chr2_3:21508853-21508872 | None:intergenic | 15.0% |
| !!! | TTGTTTTTATTCTTTAGAAA+TGG | - | chr2_3:21508853-21508872 | Msa0283830:intron | 15.0% |
| !!! | GAAATAAGTTTTTTTAAAAC+AGG | + | chr2_3:21509354-21509373 | None:intergenic | 15.0% |
| !!! | TGAAATGTTGTGTTTTTTTT+AGG | - | chr2_3:21507005-21507024 | Msa0283830:intron | 20.0% |
| !!! | GAAATGTTGTGTTTTTTTTA+GGG | - | chr2_3:21507006-21507025 | Msa0283830:intron | 20.0% |
| !!! | TTTTTTTTAGGGTTTTTGTT+TGG | - | chr2_3:21507017-21507036 | Msa0283830:intron | 20.0% |
| !!! | GCTTATGGTAAAATATTTTA+GGG | - | chr2_3:21507177-21507196 | Msa0283830:intron | 20.0% |
| !! | AATGTTGTAATTATGTTTGA+TGG | - | chr2_3:21507271-21507290 | Msa0283830:intron | 20.0% |
| !! | ATGTTGTAATTATGTTTGAT+GGG | - | chr2_3:21507272-21507291 | Msa0283830:intron | 20.0% |
| !!! | TATGTTTTGTGATTTTTGAT+AGG | - | chr2_3:21507473-21507492 | Msa0283830:intron | 20.0% |
| !!! | AATCTTTTTGTTGTTGAAAT+GGG | - | chr2_3:21507571-21507590 | Msa0283830:intron | 20.0% |
| !!! | GTTAAAAGATTGAACTTTTT+TGG | - | chr2_3:21507601-21507620 | Msa0283830:intron | 20.0% |
| !!! | ATTGATTTTTGTTGTTGAAA+TGG | - | chr2_3:21507677-21507696 | Msa0283830:intron | 20.0% |
| !!! | TTGATTTTTGTTGTTGAAAT+GGG | - | chr2_3:21507678-21507697 | Msa0283830:intron | 20.0% |
| !! | CAAAAACCAAAAAATCAAAA+TGG | + | chr2_3:21507756-21507775 | None:intergenic | 20.0% |
| !!! | CATTTTGATTTTTTGGTTTT+TGG | - | chr2_3:21507754-21507773 | Msa0283830:intron | 20.0% |
| !! | AACAAACTAAAACTACTAAA+AGG | + | chr2_3:21507918-21507937 | None:intergenic | 20.0% |
| !!! | CCATTTTATCAAATTATTAC+TGG | + | chr2_3:21507992-21508011 | None:intergenic | 20.0% |
| !! | CCAGTAATAATTTGATAAAA+TGG | - | chr2_3:21507989-21508008 | Msa0283830:intron | 20.0% |
| !!! | TATTTTTCAGTTTAATGAAG+AGG | - | chr2_3:21508230-21508249 | Msa0283830:intron | 20.0% |
| !! | CATTTATCTTTGAATAATTG+TGG | + | chr2_3:21508408-21508427 | None:intergenic | 20.0% |
| !! | TTATATATGCCTGTAATTAA+TGG | - | chr2_3:21508649-21508668 | Msa0283830:intron | 20.0% |
| !!! | TTTTGTTATGTTATTTGTCA+TGG | - | chr2_3:21509394-21509413 | Msa0283830:CDS | 20.0% |
| ! | AAACACTTCAAATTTCACAA+TGG | + | chr2_3:21506613-21506632 | None:intergenic | 25.0% |
| !!! | GGTTTTTGTTTGGAAAATTT+GGG | - | chr2_3:21507027-21507046 | Msa0283830:intron | 25.0% |
| !! | ATGTTGATTGAAGAATGTTA+TGG | - | chr2_3:21507054-21507073 | Msa0283830:intron | 25.0% |
| ! | TGTAATGATGTTTAATGAGT+TGG | - | chr2_3:21507143-21507162 | Msa0283830:intron | 25.0% |
| !! | TAATGAGTTGGATTGAATTA+TGG | - | chr2_3:21507155-21507174 | Msa0283830:intron | 25.0% |
| !! | GGCTTATGGTAAAATATTTT+AGG | - | chr2_3:21507176-21507195 | Msa0283830:intron | 25.0% |
| !!! | GGGTTTTTTTTTTTTGGTTT+TGG | - | chr2_3:21507408-21507427 | Msa0283830:intron | 25.0% |
| !! | TTTTGTGATTTTTGATAGGT+GGG | - | chr2_3:21507477-21507496 | Msa0283830:intron | 25.0% |
| !!! | GAATCTTTTTGTTGTTGAAA+TGG | - | chr2_3:21507570-21507589 | Msa0283830:intron | 25.0% |
| !!! | AAAGATTGAACTTTTTTGGT+TGG | - | chr2_3:21507605-21507624 | Msa0283830:intron | 25.0% |
| !!! | TGGTTTTATTGTTGTTGAAA+TGG | - | chr2_3:21507625-21507644 | Msa0283830:intron | 25.0% |
| !!! | GGTTTTATTGTTGTTGAAAT+GGG | - | chr2_3:21507626-21507645 | Msa0283830:intron | 25.0% |
| !!! | GAAAACCCATTTTGATTTTT+TGG | - | chr2_3:21507747-21507766 | Msa0283830:intron | 25.0% |
| !! | CATATTGACATTCTGAAAAT+TGG | - | chr2_3:21508313-21508332 | Msa0283830:intron | 25.0% |
| !!! | ATAATAACCAGTGTTGTTTA+CGG | - | chr2_3:21508367-21508386 | Msa0283830:intron | 25.0% |
| !! | ATTATGCTTTTGATATGAGT+AGG | - | chr2_3:21508699-21508718 | Msa0283830:intron | 25.0% |
| !! | TTATGCTTTTGATATGAGTA+GGG | - | chr2_3:21508700-21508719 | Msa0283830:intron | 25.0% |
| ! | AAAGAATAAAAACAATGGCA+AGG | + | chr2_3:21508848-21508867 | None:intergenic | 25.0% |
| ! | TATTCGAAGAGTCATAAATA+AGG | + | chr2_3:21508901-21508920 | None:intergenic | 25.0% |
| ! | TACCTAGATTGAAAATGTTA+TGG | + | chr2_3:21509039-21509058 | None:intergenic | 25.0% |
| !! | TTTTGATCTCATGTACAAAT+TGG | + | chr2_3:21509070-21509089 | None:intergenic | 25.0% |
| !! | AGTTTTTGTGAATTGTGATT+CGG | - | chr2_3:21509135-21509154 | Msa0283830:intron | 25.0% |
| !! | TTAAACTTTTCTGTTTCATG+AGG | - | chr2_3:21509196-21509215 | Msa0283830:intron | 25.0% |
| !! | TAAACTTTTCTGTTTCATGA+GGG | - | chr2_3:21509197-21509216 | Msa0283830:intron | 25.0% |
| !!! | GGTTCAAAAACTTTGAAATT+GGG | - | chr2_3:21509263-21509282 | Msa0283830:intron | 25.0% |
| !!! | TTTTAAAACAGGATGATTCA+GGG | + | chr2_3:21509343-21509362 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACAGGATGATTC+AGG | + | chr2_3:21509344-21509363 | None:intergenic | 25.0% |
| ! | TTATTCATTGTTCATTGTGT+TGG | - | chr2_3:21509553-21509572 | Msa0283830:CDS | 25.0% |
| ! | TTTTCCTTCTTCGATTCTTT+CGG | + | chr2_3:21506787-21506806 | None:intergenic | 30.0% |
| TTGTTCCTGTTCTTTATGAT+TGG | - | chr2_3:21506881-21506900 | Msa0283830:intron | 30.0% | |
| ACAAAATCAAAAACCCTAAC+CGG | + | chr2_3:21506945-21506964 | None:intergenic | 30.0% | |
| !! | GGGTTTTTGTTTGGAAAATT+TGG | - | chr2_3:21507026-21507045 | Msa0283830:intron | 30.0% |
| !!! | TGGTTTGTTTTTCTTTGTCT+AGG | - | chr2_3:21507074-21507093 | Msa0283830:intron | 30.0% |
| !! | GGTTTGTTTTTCTTTGTCTA+GGG | - | chr2_3:21507075-21507094 | Msa0283830:intron | 30.0% |
| TTGGATTGAATTATGGCTTA+TGG | - | chr2_3:21507162-21507181 | Msa0283830:intron | 30.0% | |
| ! | TGTTGTTGTAGTGTTTTTCT+AGG | - | chr2_3:21507206-21507225 | Msa0283830:intron | 30.0% |
| ! | GTTGTTGTAGTGTTTTTCTA+GGG | - | chr2_3:21507207-21507226 | Msa0283830:intron | 30.0% |
| ! | TGTAATTATGTTTGATGGGT+TGG | - | chr2_3:21507276-21507295 | Msa0283830:intron | 30.0% |
| ! | AATTATGGTTTGTGATAGTG+TGG | - | chr2_3:21507299-21507318 | Msa0283830:intron | 30.0% |
| !!! | TGGTTTTGGTTGTGAAATTT+TGG | - | chr2_3:21507422-21507441 | Msa0283830:intron | 30.0% |
| !!! | GGTTTTGGTTGTGAAATTTT+GGG | - | chr2_3:21507423-21507442 | Msa0283830:intron | 30.0% |
| ! | GTTTTGTGATTTTTGATAGG+TGG | - | chr2_3:21507476-21507495 | Msa0283830:intron | 30.0% |
| ! | TTTGTGATTTTTGATAGGTG+GGG | - | chr2_3:21507478-21507497 | Msa0283830:intron | 30.0% |
| ! | GTGTTTGTTGATGTTGTTAA+TGG | - | chr2_3:21507715-21507734 | Msa0283830:intron | 30.0% |
| ATGTTGTTAATGGAATGAGA+GGG | - | chr2_3:21507725-21507744 | Msa0283830:intron | 30.0% | |
| !! | TTGGTTTTTGATTAGACTGA+TGG | - | chr2_3:21507773-21507792 | Msa0283830:intron | 30.0% |
| !! | AAATCTCTAAAACGAATCCA+AGG | + | chr2_3:21508611-21508630 | None:intergenic | 30.0% |
| ACTGTAAAGTTCTTACATCA+GGG | + | chr2_3:21508822-21508841 | None:intergenic | 30.0% | |
| AACTGTAAAGTTCTTACATC+AGG | + | chr2_3:21508823-21508842 | None:intergenic | 30.0% | |
| !! | TTTAGAAATGGTTTGTTTCC+TGG | - | chr2_3:21508865-21508884 | Msa0283830:intron | 30.0% |
| TTTATGACTCTTCGAATATC+AGG | - | chr2_3:21508903-21508922 | Msa0283830:intron | 30.0% | |
| ! | GTCCATAACATTTTCAATCT+AGG | - | chr2_3:21509034-21509053 | Msa0283830:intron | 30.0% |
| ACTTTGATCTCATGTACAAA+AGG | + | chr2_3:21509118-21509137 | None:intergenic | 30.0% | |
| !! | GGGTTCAAAAACTTTGAAAT+TGG | - | chr2_3:21509262-21509281 | Msa0283830:intron | 30.0% |
| !! | CAAAAACTTTGAAATTGGGA+TGG | - | chr2_3:21509267-21509286 | Msa0283830:intron | 30.0% |
| GAAGTCCACATAATTCAAAT+TGG | + | chr2_3:21509312-21509331 | None:intergenic | 30.0% | |
| ! | TTTAAAACAGGATGATTCAG+GGG | + | chr2_3:21509342-21509361 | None:intergenic | 30.0% |
| AAAAAACTGAGTTGCATTTC+AGG | - | chr2_3:21509630-21509649 | Msa0283830:exon | 30.0% | |
| TTCTTGTCTTCCTTAGGTTT+AGG | + | chr2_3:21506733-21506752 | None:intergenic | 35.0% | |
| TCTTCTTTCTTGTCTTCCTT+AGG | + | chr2_3:21506739-21506758 | None:intergenic | 35.0% | |
| ! | TTGATGAGAAGTACACTCAA+TGG | - | chr2_3:21506851-21506870 | Msa0283830:intron | 35.0% |
| !! | TGTTTGATGGGTTGGAATTA+TGG | - | chr2_3:21507284-21507303 | Msa0283830:intron | 35.0% |
| AGTGTGGTTGGATTGAATTA+TGG | - | chr2_3:21507315-21507334 | Msa0283830:intron | 35.0% | |
| TGATTTGATCCATGTAGTTG+AGG | - | chr2_3:21507350-21507369 | Msa0283830:CDS | 35.0% | |
| AAAACCAAACCTCAACTACA+TGG | + | chr2_3:21507362-21507381 | None:intergenic | 35.0% | |
| GATGTTGTTAATGGAATGAG+AGG | - | chr2_3:21507724-21507743 | Msa0283830:intron | 35.0% | |
| GTCTTGTACTTCTTGACAAA+TGG | + | chr2_3:21508264-21508283 | None:intergenic | 35.0% | |
| TACAAGACTATCATACATCC+AGG | - | chr2_3:21508276-21508295 | Msa0283830:intron | 35.0% | |
| TATGAAATTTATACCTCGCC+TGG | + | chr2_3:21508297-21508316 | None:intergenic | 35.0% | |
| ATAATAACCAGTCATGTCGA+TGG | - | chr2_3:21508429-21508448 | Msa0283830:intron | 35.0% | |
| TTAGCAGTGTTGCCAAATAT+CGG | + | chr2_3:21508569-21508588 | None:intergenic | 35.0% | |
| ! | ATCTTTATGCTTTGAACTGC+AGG | - | chr2_3:21508738-21508757 | Msa0283830:intron | 35.0% |
| !! | GCCACAAAATTCTAAGATTG+TGG | - | chr2_3:21508780-21508799 | Msa0283830:CDS | 35.0% |
| ! | GCCACAATCTTAGAATTTTG+TGG | + | chr2_3:21508784-21508803 | None:intergenic | 35.0% |
| AAATAAGGAACGAAATAGCC+AGG | + | chr2_3:21508886-21508905 | None:intergenic | 35.0% | |
| TCGAATATCAGGTTCTCATT+TGG | - | chr2_3:21508914-21508933 | Msa0283830:intron | 35.0% | |
| CGAATATCAGGTTCTCATTT+GGG | - | chr2_3:21508915-21508934 | Msa0283830:intron | 35.0% | |
| TCTCATGTACAAAAGGAACA+TGG | + | chr2_3:21509111-21509130 | None:intergenic | 35.0% | |
| AACAAAACTGCAGTGTAATC+TGG | + | chr2_3:21509161-21509180 | None:intergenic | 35.0% | |
| AGCTCTATTGAACTGAACAA+TGG | - | chr2_3:21509223-21509242 | Msa0283830:intron | 35.0% | |
| GCTCTATTGAACTGAACAAT+GGG | - | chr2_3:21509224-21509243 | Msa0283830:intron | 35.0% | |
| TGGGATGGACATTATCAAAT+CGG | - | chr2_3:21509282-21509301 | Msa0283830:intron | 35.0% | |
| GTCCTCCAATTTGAATTATG+TGG | - | chr2_3:21509304-21509323 | Msa0283830:intron | 35.0% | |
| GTCCACATAATTCAAATTGG+AGG | + | chr2_3:21509309-21509328 | None:intergenic | 35.0% | |
| CAATATCTGCAAAAGAAGCT+CGG | + | chr2_3:21509442-21509461 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGCAGATATTGAC+TGG | - | chr2_3:21509444-21509463 | Msa0283830:CDS | 35.0% |
| TCCTTGTTCATTCATTGTGT+TGG | - | chr2_3:21509593-21509612 | Msa0283830:CDS | 35.0% | |
| ACCAACACAATGAATGAACA+AGG | + | chr2_3:21509597-21509616 | None:intergenic | 35.0% | |
| ! | ATGGTTTGTGATAGTGTGGT+TGG | - | chr2_3:21507303-21507322 | Msa0283830:intron | 40.0% |
| TGATCCATGTAGTTGAGGTT+TGG | - | chr2_3:21507355-21507374 | Msa0283830:CDS | 40.0% | |
| CTACTTACAAGAATCGTCAG+AGG | - | chr2_3:21507518-21507537 | Msa0283830:CDS | 40.0% | |
| ! | TCGTCAGAGGCTTTATCTTT+CGG | - | chr2_3:21507531-21507550 | Msa0283830:CDS | 40.0% |
| ! | TTCGCAATCACCAGAGTATT+CGG | + | chr2_3:21507806-21507825 | None:intergenic | 40.0% |
| ATTGTGAGGTTGTGAAGACT+AGG | - | chr2_3:21507825-21507844 | Msa0283830:intron | 40.0% | |
| TTGTGAGGTTGTGAAGACTA+GGG | - | chr2_3:21507826-21507845 | Msa0283830:intron | 40.0% | |
| GATCTATGAAGCATAGACAC+TGG | - | chr2_3:21507944-21507963 | Msa0283830:intron | 40.0% | |
| !! | ATAACCAGTGTTGTTTACGG+CGG | - | chr2_3:21508370-21508389 | Msa0283830:intron | 40.0% |
| TTTGCCTGCCAATTTCGTAA+AGG | + | chr2_3:21508531-21508550 | None:intergenic | 40.0% | |
| AACTGCAGGTGAACAGAATT+AGG | - | chr2_3:21508752-21508771 | Msa0283830:intron | 40.0% | |
| ACTGCAGGTGAACAGAATTA+GGG | - | chr2_3:21508753-21508772 | Msa0283830:intron | 40.0% | |
| TCAAATAGACGTACCAGATC+TGG | + | chr2_3:21508994-21509013 | None:intergenic | 40.0% | |
| AACTGAACAATGGGTAGAAC+AGG | - | chr2_3:21509233-21509252 | Msa0283830:intron | 40.0% | |
| ACTGAACAATGGGTAGAACA+GGG | - | chr2_3:21509234-21509253 | Msa0283830:intron | 40.0% | |
| ! | TTGTCATGGTTGATGCTTCT+TGG | - | chr2_3:21509408-21509427 | Msa0283830:CDS | 40.0% |
| GAGCAAACTCTGCATTATCT+TGG | + | chr2_3:21509473-21509492 | None:intergenic | 40.0% | |
| AAAGCACATAGGGATGAGTA+GGG | + | chr2_3:21509506-21509525 | None:intergenic | 40.0% | |
| AAGACAAAACAGTCGTGTTG+TGG | - | chr2_3:21509655-21509674 | Msa0283830:five_prime_UTR | 40.0% | |
| CTGTAGCAGCAGATGTTATA+TGG | + | chr2_3:21509692-21509711 | None:intergenic | 40.0% | |
| ! | CAGAGAGAGTGTGAGAGAAA+TGG | - | chr2_3:21506654-21506673 | Msa0283830:intron | 45.0% |
| GTGAAGAAGAAGGAGACAAG+AGG | - | chr2_3:21506700-21506719 | Msa0283830:intron | 45.0% | |
| AGGACGCAAACCTAAACCTA+AGG | - | chr2_3:21506720-21506739 | Msa0283830:intron | 45.0% | |
| GACACCGAAAGAATCGAAGA+AGG | - | chr2_3:21506780-21506799 | Msa0283830:intron | 45.0% | |
| GCGAGCCAATCATAAAGAAC+AGG | + | chr2_3:21506889-21506908 | None:intergenic | 45.0% | |
| TCGCTAACCATAACCTCGTT+TGG | - | chr2_3:21506905-21506924 | Msa0283830:intron | 45.0% | |
| TAAGTAGCCTGTTCAAGCTG+AGG | + | chr2_3:21507505-21507524 | None:intergenic | 45.0% | |
| !! | TGGAAGTGTTCCGAATACTC+TGG | - | chr2_3:21507793-21507812 | Msa0283830:intron | 45.0% |
| TCTGGTGATTGCGAATTGTG+AGG | - | chr2_3:21507811-21507830 | Msa0283830:intron | 45.0% | |
| ACTTGACTAACCTCACGTGT+TGG | - | chr2_3:21508026-21508045 | Msa0283830:CDS | 45.0% | |
| ATAACCAGTCATGTCGATGG+CGG | - | chr2_3:21508432-21508451 | Msa0283830:intron | 45.0% | |
| AATCCAAACGCCCGCAATAT+CGG | - | chr2_3:21508456-21508475 | Msa0283830:intron | 45.0% | |
| CATGGCACCATACTCAGATA+TGG | + | chr2_3:21508498-21508517 | None:intergenic | 45.0% | |
| ! | CATATCTGAGTATGGTGCCA+TGG | - | chr2_3:21508496-21508515 | Msa0283830:CDS | 45.0% |
| ACCGCCATCCTTTACGAAAT+TGG | - | chr2_3:21508520-21508539 | Msa0283830:intron | 45.0% | |
| GCCAATTTCGTAAAGGATGG+CGG | + | chr2_3:21508524-21508543 | None:intergenic | 45.0% | |
| CCTGCCAATTTCGTAAAGGA+TGG | + | chr2_3:21508527-21508546 | None:intergenic | 45.0% | |
| CCATCCTTTACGAAATTGGC+AGG | - | chr2_3:21508524-21508543 | Msa0283830:intron | 45.0% | |
| TTGCCAAATATCGGACATGG+TGG | + | chr2_3:21508560-21508579 | None:intergenic | 45.0% | |
| GTGTTGCCAAATATCGGACA+TGG | + | chr2_3:21508563-21508582 | None:intergenic | 45.0% | |
| TCTTGTTCCTTGACATGCCT+TGG | - | chr2_3:21508591-21508610 | Msa0283830:intron | 45.0% | |
| AACGAATCCAAGGCATGTCA+AGG | + | chr2_3:21508601-21508620 | None:intergenic | 45.0% | |
| TACAAACTCTCGTCCAGATC+TGG | - | chr2_3:21508978-21508997 | Msa0283830:intron | 45.0% | |
| ! | GAAAGCACATAGGGATGAGT+AGG | + | chr2_3:21509507-21509526 | None:intergenic | 45.0% |
| ACTCATCCCTATGTGCTTTC+TGG | - | chr2_3:21509507-21509526 | Msa0283830:CDS | 45.0% | |
| ! | CAACCTCCAGAAAGCACATA+GGG | + | chr2_3:21509516-21509535 | None:intergenic | 45.0% |
| ATGGAGACACCACCATCAAC+CGG | - | chr2_3:21506673-21506692 | Msa0283830:intron | 50.0% | |
| GAGAAGGCCAAACGAGGTTA+TGG | + | chr2_3:21506915-21506934 | None:intergenic | 50.0% | |
| AAGAGAGAGAAGGCCAAACG+AGG | + | chr2_3:21506921-21506940 | None:intergenic | 50.0% | |
| ! | TTTGGCCTTCTCTCTCTTGC+CGG | - | chr2_3:21506923-21506942 | Msa0283830:intron | 50.0% |
| ! | CTTCTCTCTCTTGCCGGTTA+GGG | - | chr2_3:21506929-21506948 | Msa0283830:intron | 50.0% |
| ! | GAGGCTTTATCTTTCGGAGC+AGG | - | chr2_3:21507537-21507556 | Msa0283830:CDS | 50.0% |
| AGCTGCTGAGCACATTTCTC+AGG | - | chr2_3:21507853-21507872 | Msa0283830:intron | 50.0% | |
| AACAACGTCACCAACACGTG+AGG | + | chr2_3:21508039-21508058 | None:intergenic | 50.0% | |
| !! | TCACGTGTTGGTGACGTTGT+TGG | - | chr2_3:21508038-21508057 | Msa0283830:CDS | 50.0% |
| GCACCACACACATACACACT+GGG | - | chr2_3:21508139-21508158 | Msa0283830:intron | 50.0% | |
| TGTCCCAGTGTGTATGTGTG+TGG | + | chr2_3:21508145-21508164 | None:intergenic | 50.0% | |
| ACACTGGGACACACCTTCAA+TGG | - | chr2_3:21508154-21508173 | Msa0283830:intron | 50.0% | |
| ACACACCTTCAATGGAGGCT+TGG | - | chr2_3:21508162-21508181 | Msa0283830:intron | 50.0% | |
| CACACCTTCAATGGAGGCTT+GGG | - | chr2_3:21508163-21508182 | Msa0283830:intron | 50.0% | |
| ACACCTTCAATGGAGGCTTG+GGG | - | chr2_3:21508164-21508183 | Msa0283830:intron | 50.0% | |
| GACTATCATACATCCAGGCG+AGG | - | chr2_3:21508281-21508300 | Msa0283830:intron | 50.0% | |
| ATCTCCGCCGTAAACAACAC+TGG | + | chr2_3:21508377-21508396 | None:intergenic | 50.0% | |
| ATTTCCGCCATCGACATGAC+TGG | + | chr2_3:21508439-21508458 | None:intergenic | 50.0% | |
| CACATGTCAGCCGATATTGC+GGG | + | chr2_3:21508469-21508488 | None:intergenic | 50.0% | |
| CCACATGTCAGCCGATATTG+CGG | + | chr2_3:21508470-21508489 | None:intergenic | 50.0% | |
| GGCACCATACTCAGATATGG+CGG | + | chr2_3:21508495-21508514 | None:intergenic | 50.0% | |
| TAGCTCCAAGGACAGCATGA+CGG | + | chr2_3:21508960-21508979 | None:intergenic | 50.0% | |
| GACGAGAGTTTGTAGCTCCA+AGG | + | chr2_3:21508972-21508991 | None:intergenic | 50.0% | |
| ACAATGGGTAGAACAGGGCT+TGG | - | chr2_3:21509239-21509258 | Msa0283830:intron | 50.0% | |
| CAATGGGTAGAACAGGGCTT+GGG | - | chr2_3:21509240-21509259 | Msa0283830:intron | 50.0% | |
| AATGGGTAGAACAGGGCTTG+GGG | - | chr2_3:21509241-21509260 | Msa0283830:intron | 50.0% | |
| CATCCCTATGTGCTTTCTGG+AGG | - | chr2_3:21509510-21509529 | Msa0283830:CDS | 50.0% | |
| ! | CCAACCTCCAGAAAGCACAT+AGG | + | chr2_3:21509517-21509536 | None:intergenic | 50.0% |
| ! | CCTATGTGCTTTCTGGAGGT+TGG | - | chr2_3:21509514-21509533 | Msa0283830:CDS | 50.0% |
| !! | TTCTTCACTGCGCCGGTTGA+TGG | + | chr2_3:21506688-21506707 | None:intergenic | 55.0% |
| AACCGGCGCAGTGAAGAAGA+AGG | - | chr2_3:21506690-21506709 | Msa0283830:intron | 55.0% | |
| CTCCTTCTTCTTCACTGCGC+CGG | + | chr2_3:21506695-21506714 | None:intergenic | 55.0% | |
| CCTAACCGGCAAGAGAGAGA+AGG | + | chr2_3:21506931-21506950 | None:intergenic | 55.0% | |
| ! | CCTTCTCTCTCTTGCCGGTT+AGG | - | chr2_3:21506928-21506947 | Msa0283830:intron | 55.0% |
| CCAACACCATGTGTGCACCA+CGG | + | chr2_3:21508119-21508138 | None:intergenic | 55.0% | |
| CGTGGTGCACACATGGTGTT+GGG | - | chr2_3:21508117-21508136 | Msa0283830:intron | 55.0% | |
| GGCACCACACACATACACAC+TGG | - | chr2_3:21508138-21508157 | Msa0283830:intron | 55.0% | |
| CTGGGACACACCTTCAATGG+AGG | - | chr2_3:21508157-21508176 | Msa0283830:intron | 55.0% | |
| AGACCCCAAGCCTCCATTGA+AGG | + | chr2_3:21508170-21508189 | None:intergenic | 55.0% | |
| ! | CCGCAATATCGGCTGACATG+TGG | - | chr2_3:21508467-21508486 | Msa0283830:intron | 55.0% |
| GCGCCACCATGTCCGATATT+TGG | - | chr2_3:21508554-21508573 | Msa0283830:intron | 55.0% | |
| ATCAGGGCTGTCTGTGTGAG+TGG | + | chr2_3:21508806-21508825 | None:intergenic | 55.0% | |
| CCAAGGACAGCATGACGGTT+AGG | + | chr2_3:21508955-21508974 | None:intergenic | 55.0% | |
| CCTAACCGTCATGCTGTCCT+TGG | - | chr2_3:21508952-21508971 | Msa0283830:intron | 55.0% | |
| ATGGGTAGAACAGGGCTTGG+GGG | - | chr2_3:21509242-21509261 | Msa0283830:intron | 55.0% | |
| !! | TTCACTGCGCCGGTTGATGG+TGG | + | chr2_3:21506685-21506704 | None:intergenic | 60.0% |
| GTGGGGTCCTCAGCTTGAAC+AGG | - | chr2_3:21507495-21507514 | Msa0283830:CDS | 60.0% | |
| GCACCACGGTTGCACACACA+CGG | + | chr2_3:21508105-21508124 | None:intergenic | 60.0% | |
| GTGCAACCGTGGTGCACACA+TGG | - | chr2_3:21508110-21508129 | Msa0283830:intron | 60.0% | |
| CCGTGGTGCACACATGGTGT+TGG | - | chr2_3:21508116-21508135 | Msa0283830:intron | 60.0% | |
| CAGCCGATATTGCGGGCGTT+TGG | + | chr2_3:21508462-21508481 | None:intergenic | 60.0% | |
| GGCGCCGCCATATCTGAGTA+TGG | - | chr2_3:21508488-21508507 | Msa0283830:CDS | 60.0% | |
| ! | CGTAAAGGATGGCGGTGCCA+TGG | + | chr2_3:21508516-21508535 | None:intergenic | 60.0% |
| GTGCCGTGTGTGTGCAACCG+TGG | - | chr2_3:21508099-21508118 | Msa0283830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 21506601 | 21509719 | 21506601 | ID=Msa0283830;Name=Msa0283830 |
| chr2_3 | mRNA | 21506601 | 21509719 | 21506601 | ID=Msa0283830-mRNA-1;Parent=Msa0283830;Name=Msa0283830-mRNA-1;_AED=0.16;_eAED=0.16;_QI=72|0.28|0.25|1|1|0.87|8|0|243 |
| chr2_3 | exon | 21506601 | 21506668 | 21506601 | ID=Msa0283830-mRNA-1:exon:8443;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21506789 | 21506864 | 21506789 | ID=Msa0283830-mRNA-1:exon:8442;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21507321 | 21507395 | 21507321 | ID=Msa0283830-mRNA-1:exon:8441;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21507495 | 21507560 | 21507495 | ID=Msa0283830-mRNA-1:exon:8440;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21508018 | 21508080 | 21508018 | ID=Msa0283830-mRNA-1:exon:8439;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21508488 | 21508532 | 21508488 | ID=Msa0283830-mRNA-1:exon:8438;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21508762 | 21508825 | 21508762 | ID=Msa0283830-mRNA-1:exon:8437;Parent=Msa0283830-mRNA-1 |
| chr2_3 | exon | 21509376 | 21509719 | 21509376 | ID=Msa0283830-mRNA-1:exon:8436;Parent=Msa0283830-mRNA-1 |
| chr2_3 | five_prime_UTR | 21509648 | 21509719 | 21509648 | ID=Msa0283830-mRNA-1:five_prime_utr;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21509376 | 21509647 | 21509376 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21508762 | 21508825 | 21508762 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21508488 | 21508532 | 21508488 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21508018 | 21508080 | 21508018 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21507495 | 21507560 | 21507495 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21507321 | 21507395 | 21507321 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21506789 | 21506864 | 21506789 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| chr2_3 | CDS | 21506601 | 21506668 | 21506601 | ID=Msa0283830-mRNA-1:cds;Parent=Msa0283830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
