Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285730 | XP_003595389.1 | 93.780 | 209 | 11 | 1 | 1 | 209 | 1 | 207 | 4.38e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285730 | sp|Q9C5K8|TIF3B_ARATH | 53.448 | 116 | 46 | 4 | 58 | 171 | 57 | 166 | 7.84e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0285730 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0285730 | Msa0706180 | 0.826254 | 3.000544e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285730 | MtrunA17_Chr2g0302041 | 93.780 | 209 | 11 | 1 | 1 | 209 | 1 | 207 | 4.03e-141 | 392 |
| Msa0285730 | MtrunA17_Chr4g0069721 | 58.209 | 134 | 48 | 3 | 38 | 168 | 25 | 153 | 8.46e-43 | 142 |
| Msa0285730 | MtrunA17_Chr5g0399851 | 36.066 | 122 | 63 | 3 | 57 | 176 | 20 | 128 | 3.31e-15 | 69.7 |
| Msa0285730 | MtrunA17_Chr2g0301131 | 32.031 | 128 | 64 | 3 | 58 | 168 | 112 | 233 | 6.78e-14 | 68.6 |
| Msa0285730 | MtrunA17_Chr4g0070271 | 32.231 | 121 | 45 | 3 | 50 | 168 | 91 | 176 | 1.16e-12 | 64.3 |
| Msa0285730 | MtrunA17_Chr5g0399881 | 33.333 | 114 | 59 | 3 | 58 | 171 | 44 | 140 | 3.09e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0285730 | AT5G20900.1 | 53.448 | 116 | 46 | 4 | 58 | 171 | 57 | 166 | 7.97e-31 | 112 |
| Msa0285730 | AT3G43440.1 | 39.535 | 129 | 52 | 4 | 57 | 183 | 130 | 234 | 9.04e-16 | 73.6 |
| Msa0285730 | AT3G43440.2 | 36.923 | 130 | 56 | 4 | 56 | 183 | 43 | 148 | 1.70e-15 | 71.2 |
| Msa0285730 | AT1G74950.1 | 37.097 | 124 | 49 | 4 | 59 | 168 | 120 | 228 | 4.86e-13 | 66.2 |
| Msa0285730 | AT1G19180.2 | 35.043 | 117 | 62 | 3 | 54 | 168 | 56 | 160 | 1.35e-12 | 64.3 |
| Msa0285730 | AT1G19180.1 | 34.746 | 118 | 61 | 4 | 54 | 168 | 122 | 226 | 2.79e-12 | 64.3 |
| Msa0285730 | AT1G19180.3 | 34.746 | 118 | 61 | 4 | 54 | 168 | 122 | 226 | 2.79e-12 | 64.3 |
Find 66 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAGCTTGAAGTTGTTAT+TGG | 0.231238 | 2_3:+25718150 | Msa0285730:three_prime_UTR |
| CAATTCTCTTCTTTCAGTTT+TGG | 0.249504 | 2_3:+25714314 | Msa0285730:five_prime_UTR |
| CAGCTTACCATCTTCTATAA+TGG | 0.263317 | 2_3:+25716931 | Msa0285730:CDS |
| TTCCTTCACCTGTTCCTTCA+AGG | 0.273672 | 2_3:+25717281 | Msa0285730:CDS |
| ACTCAAGTATCTTCCATTCT+TGG | 0.284155 | 2_3:-25718176 | None:intergenic |
| GAAAGAAGAGAATTGTTAAA+AGG | 0.330386 | 2_3:-25714306 | None:intergenic |
| TAACCTATGAATCACTGTTT+TGG | 0.334221 | 2_3:-25718131 | None:intergenic |
| TCCTTCATTGAAACCGAATC+TGG | 0.348326 | 2_3:-25717732 | None:intergenic |
| TTACCAAAACAGTGATTCAT+AGG | 0.354830 | 2_3:+25718128 | Msa0285730:three_prime_UTR |
| TTGAGCAGAATTCTAGTGTT+TGG | 0.362255 | 2_3:+25717791 | Msa0285730:exon |
| AAAGTAACCGGCAATGATTA+TGG | 0.369608 | 2_3:+25714188 | Msa0285730:five_prime_UTR |
| TTTAGGTCAATGCCAGCATT+TGG | 0.374746 | 2_3:+25716880 | Msa0285730:intron |
| TGCTGACAATTCGCCAGATT+CGG | 0.379407 | 2_3:+25717719 | Msa0285730:CDS |
| TCTTCTCCTATTGCTGTTGA+TGG | 0.379691 | 2_3:+25714415 | Msa0285730:CDS |
| AGTGAATGTCTGCGTGCTAT+TGG | 0.383673 | 2_3:-25717514 | None:intergenic |
| TTGTAGGGTTCTTCAAGAAA+TGG | 0.385942 | 2_3:+25714345 | Msa0285730:exon |
| CTCAAGTATCTTCCATTCTT+GGG | 0.396153 | 2_3:-25718175 | None:intergenic |
| TGAGTTGTATTAGCAATCAT+TGG | 0.398568 | 2_3:-25716910 | None:intergenic |
| AGCTTACCATCTTCTATAAT+GGG | 0.398580 | 2_3:+25716932 | Msa0285730:CDS |
| CTTTATGTGTTCTTTCAGTA+AGG | 0.398650 | 2_3:+25717819 | Msa0285730:three_prime_UTR |
| CTGCAGATAGAACTCTTTGC+AGG | 0.418330 | 2_3:-25717361 | None:intergenic |
| GCCAGATTCGGTTTCAATGA+AGG | 0.420770 | 2_3:+25717731 | Msa0285730:CDS |
| CTAGCACCATCAACAGCAAT+AGG | 0.427831 | 2_3:-25714421 | None:intergenic |
| CACATGTTGCTTAAAGTAAC+CGG | 0.428354 | 2_3:+25714176 | Msa0285730:five_prime_UTR |
| ATTGGATTCGTTCCAAATGC+TGG | 0.440801 | 2_3:-25716892 | None:intergenic |
| ACAGGTGAAGGAACAGGAAC+GGG | 0.448799 | 2_3:-25717271 | None:intergenic |
| GCTAGTTCCAACATGGTTGA+GGG | 0.452791 | 2_3:+25714439 | Msa0285730:CDS |
| TTCTTCAGAAGCGGCGAGAC+AGG | 0.453708 | 2_3:+25717545 | Msa0285730:CDS |
| AATGGATGGTGTTACTGTTA+AGG | 0.453858 | 2_3:+25714363 | Msa0285730:exon |
| ACTTCGAAGTTGCATCTCTC+TGG | 0.455499 | 2_3:+25717949 | Msa0285730:three_prime_UTR |
| GTTGGCTGAAATTCTTCCAT+TGG | 0.460471 | 2_3:-25717756 | None:intergenic |
| TGACCAACCATAATCATTGC+CGG | 0.463542 | 2_3:-25714195 | None:intergenic |
| CTTCTTCGTTTCACTAGACT+TGG | 0.471119 | 2_3:-25717233 | None:intergenic |
| TTGTTATTGGATCCCAAGAA+TGG | 0.471610 | 2_3:+25718163 | Msa0285730:three_prime_UTR |
| TGATGGAATTCCTGCAGAAA+AGG | 0.477638 | 2_3:+25716969 | Msa0285730:CDS |
| GGGAGTATTTGTATCTATGA+TGG | 0.478209 | 2_3:+25716952 | Msa0285730:CDS |
| TGCTAGTTCCAACATGGTTG+AGG | 0.478224 | 2_3:+25714438 | Msa0285730:CDS |
| GCAGTTCCATGTGGCGAAGA+AGG | 0.484372 | 2_3:-25717304 | None:intergenic |
| CTGCAAAGAGTTCTATCTGC+AGG | 0.484476 | 2_3:+25717362 | Msa0285730:CDS |
| TCTAGAACAGTAAACTTCTC+TGG | 0.487430 | 2_3:-25714391 | None:intergenic |
| GAAGGAACAGGTGAAGGAAC+AGG | 0.487448 | 2_3:-25717277 | None:intergenic |
| TGTGGCGAAGAAGGCCTTGA+AGG | 0.491077 | 2_3:-25717295 | None:intergenic |
| ATAGAACTCTTTGCAGGAAA+GGG | 0.495560 | 2_3:-25717355 | None:intergenic |
| TTCAAATGTTTCTTCAGAAG+CGG | 0.502165 | 2_3:+25717536 | Msa0285730:CDS |
| AATACTCCCATTATAGAAGA+TGG | 0.513403 | 2_3:-25716938 | None:intergenic |
| GAAGAAGGCCTTGAAGGAAC+AGG | 0.524051 | 2_3:-25717289 | None:intergenic |
| TTTATGTGTTCTTTCAGTAA+GGG | 0.525869 | 2_3:+25717820 | Msa0285730:three_prime_UTR |
| GCTCAAGATGCAGATATAGT+TGG | 0.526009 | 2_3:-25717774 | None:intergenic |
| TCAAGGCCTTCTTCGCCACA+TGG | 0.540794 | 2_3:+25717298 | Msa0285730:CDS |
| AGTTCTATCTGCAGGCTGCA+AGG | 0.555717 | 2_3:+25717370 | Msa0285730:CDS |
| GATAGAACTCTTTGCAGGAA+AGG | 0.557564 | 2_3:-25717356 | None:intergenic |
| TGATAATATCGCTTCACCAC+AGG | 0.571663 | 2_3:+25717327 | Msa0285730:CDS |
| GGCCTTGAAGGAACAGGTGA+AGG | 0.574210 | 2_3:-25717283 | None:intergenic |
| CATTGACCCCTCAACCATGT+TGG | 0.577350 | 2_3:-25714446 | None:intergenic |
| GGTTTCAATGAAGGAACCAA+TGG | 0.581761 | 2_3:+25717740 | Msa0285730:CDS |
| AACAGGTGAAGGAACAGGAA+CGG | 0.583312 | 2_3:-25717272 | None:intergenic |
| AACAAAGGTAGCTGACAACA+TGG | 0.591184 | 2_3:+25717683 | Msa0285730:CDS |
| TAACCGGCAATGATTATGGT+TGG | 0.602717 | 2_3:+25714192 | Msa0285730:five_prime_UTR |
| GACAACATGGAGAACAACTT+CGG | 0.616517 | 2_3:+25717696 | Msa0285730:CDS |
| AGGGTTCTTCAAGAAATGGA+TGG | 0.617126 | 2_3:+25714349 | Msa0285730:exon |
| GAACTCTTTGCAGGAAAGGG+AGG | 0.634573 | 2_3:-25717352 | None:intergenic |
| GCAGGAAAGGGAGGTGCCTG+TGG | 0.640323 | 2_3:-25717343 | None:intergenic |
| AAAGACATACTTGTTTGCTG+AGG | 0.643225 | 2_3:-25714476 | None:intergenic |
| TGATGGTGCTAGTTCCAACA+TGG | 0.653805 | 2_3:+25714432 | Msa0285730:CDS |
| CTAGTTCCAACATGGTTGAG+GGG | 0.662811 | 2_3:+25714440 | Msa0285730:CDS |
| ATATTATCAGCAGTTCCATG+TGG | 0.739266 | 2_3:-25717313 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATGTTTTTTTTTTTTT+TGG | + | chr2_3:25714665-25714684 | Msa0285730:intron | 10.0% |
| !! | AAAAAACTTCGTAAAATATT+TGG | + | chr2_3:25714272-25714291 | Msa0285730:five_prime_UTR | 15.0% |
| !!! | ATAAAAAAAACATGCTTTTT+TGG | - | chr2_3:25714512-25714531 | None:intergenic | 15.0% |
| !! | AAATTGGAAACAAAAAAAAA+GGG | - | chr2_3:25714592-25714611 | None:intergenic | 15.0% |
| !! | AAAATTGGAAACAAAAAAAA+AGG | - | chr2_3:25714593-25714612 | None:intergenic | 15.0% |
| !!! | TAACTTGGTTATTTTTATTT+TGG | + | chr2_3:25714642-25714661 | Msa0285730:intron | 15.0% |
| !! | ATCTTAGTTATTTAAAAAGT+TGG | - | chr2_3:25716120-25716139 | None:intergenic | 15.0% |
| !! | CATTACAATATTCCAAAAAA+AGG | + | chr2_3:25714216-25714235 | Msa0285730:five_prime_UTR | 20.0% |
| !! | ATCAAAACAGAAACAAAAAT+TGG | - | chr2_3:25714608-25714627 | None:intergenic | 20.0% |
| !! | AAAATTGTTCTAATGTGTTA+AGG | + | chr2_3:25714811-25714830 | Msa0285730:intron | 20.0% |
| !! | AAATTGTTCTAATGTGTTAA+GGG | + | chr2_3:25714812-25714831 | Msa0285730:intron | 20.0% |
| !! | ATACACTGATACATATATTT+AGG | + | chr2_3:25716622-25716641 | Msa0285730:intron | 20.0% |
| !!! | ACTGTATTATTTTCTCTTTT+AGG | + | chr2_3:25716863-25716882 | Msa0285730:intron | 20.0% |
| !! | ATAATTTATGTTTGTACTAC+AGG | + | chr2_3:25717625-25717644 | Msa0285730:intron | 20.0% |
| !!! | ATTTTTGAACATAAACACAA+TGG | - | chr2_3:25718061-25718080 | None:intergenic | 20.0% |
| ! | GAAAGAAGAGAATTGTTAAA+AGG | - | chr2_3:25714309-25714328 | None:intergenic | 25.0% |
| !! | TCCAATTTTTGTACCTTAAA+TGG | + | chr2_3:25714733-25714752 | Msa0285730:intron | 25.0% |
| !! | ACCATTTAAGGTACAAAAAT+TGG | - | chr2_3:25714737-25714756 | None:intergenic | 25.0% |
| ! | ACACAAATTGAAACCATTTA+AGG | - | chr2_3:25714749-25714768 | None:intergenic | 25.0% |
| !! | TCTACGAAAAACGAAATTTT+CGG | + | chr2_3:25714875-25714894 | Msa0285730:intron | 25.0% |
| ! | AGTAGATCAAAGAAAACTTT+AGG | - | chr2_3:25714939-25714958 | None:intergenic | 25.0% |
| ! | ATCTACTTAAATAGTACGAA+CGG | - | chr2_3:25715106-25715125 | None:intergenic | 25.0% |
| ! | TTCTATTATGCAATGAATCA+GGG | - | chr2_3:25715162-25715181 | None:intergenic | 25.0% |
| ! | AAGAACTCAACGATTAATTA+TGG | - | chr2_3:25715236-25715255 | None:intergenic | 25.0% |
| ! | AAATATTACCATAGCAAATC+CGG | - | chr2_3:25715284-25715303 | None:intergenic | 25.0% |
| !! | AACTATACTTGTTACTTCTT+TGG | + | chr2_3:25715361-25715380 | Msa0285730:intron | 25.0% |
| ! | TTAGTAGTTAAGAGTTGTTA+AGG | + | chr2_3:25715434-25715453 | Msa0285730:intron | 25.0% |
| ! | TAGTAGTTAAGAGTTGTTAA+GGG | + | chr2_3:25715435-25715454 | Msa0285730:intron | 25.0% |
| ! | TTGTTAAGGGATAGAATAAA+GGG | + | chr2_3:25715448-25715467 | Msa0285730:intron | 25.0% |
| ! | ATATGAAAATCGAAAAGAGT+AGG | - | chr2_3:25715632-25715651 | None:intergenic | 25.0% |
| !!! | AGTCTTCATTGATTTAGAAA+AGG | - | chr2_3:25715707-25715726 | None:intergenic | 25.0% |
| !!! | TGCATATTTTTATTGAACCT+TGG | + | chr2_3:25715750-25715769 | Msa0285730:intron | 25.0% |
| !!! | ATGAAAAAGTATTAAGTCCA+AGG | - | chr2_3:25716093-25716112 | None:intergenic | 25.0% |
| !!! | AGATATGTCATTGTTTTTCA+TGG | + | chr2_3:25716275-25716294 | Msa0285730:intron | 25.0% |
| ! | ACATGAATTTCATCAACTTA+TGG | - | chr2_3:25716356-25716375 | None:intergenic | 25.0% |
| ! | AATGGAATAAGTCATTTGAA+TGG | - | chr2_3:25716421-25716440 | None:intergenic | 25.0% |
| ! | AGTGTATATGCTACATTAAT+GGG | - | chr2_3:25716609-25716628 | None:intergenic | 25.0% |
| ! | TTAACTCTCTATATACTAAC+AGG | + | chr2_3:25717177-25717196 | Msa0285730:intron | 25.0% |
| !! | CATACACAAAATTTGAAACA+TGG | - | chr2_3:25717584-25717603 | None:intergenic | 25.0% |
| ! | TTTATGTGTTCTTTCAGTAA+GGG | + | chr2_3:25717820-25717839 | Msa0285730:three_prime_UTR | 25.0% |
| ! | TTTGGTAAGAATGAAAAAAC+AGG | - | chr2_3:25718116-25718135 | None:intergenic | 25.0% |
| !!! | GCTGTTTTGATTCCTTTTTT+TGG | - | chr2_3:25714231-25714250 | None:intergenic | 30.0% |
| !!! | CGAAGTTTTTTGAGTTTCAA+TGG | - | chr2_3:25714263-25714282 | None:intergenic | 30.0% |
| ! | CAATTCTCTTCTTTCAGTTT+TGG | + | chr2_3:25714314-25714333 | Msa0285730:five_prime_UTR | 30.0% |
| !! | AGTTTTGGTGATCTATTTGT+AGG | + | chr2_3:25714329-25714348 | Msa0285730:five_prime_UTR | 30.0% |
| !! | GTTTTGGTGATCTATTTGTA+GGG | + | chr2_3:25714330-25714349 | Msa0285730:five_prime_UTR | 30.0% |
| ACAAAAAAAAAGGGTCTTGA+AGG | - | chr2_3:25714583-25714602 | None:intergenic | 30.0% | |
| TGAATGATTACTCACTAACT+TGG | + | chr2_3:25714627-25714646 | Msa0285730:intron | 30.0% | |
| TGTAGATGAACAATGAACTA+AGG | + | chr2_3:25714701-25714720 | Msa0285730:intron | 30.0% | |
| !! | TATCCTATAGCCTTGTTTAA+TGG | + | chr2_3:25714908-25714927 | Msa0285730:intron | 30.0% |
| AAACCATTAAACAAGGCTAT+AGG | - | chr2_3:25714914-25714933 | None:intergenic | 30.0% | |
| TTAGGAGAAACCATTAAACA+AGG | - | chr2_3:25714921-25714940 | None:intergenic | 30.0% | |
| !! | CTTTGATCTACTTTTCTTAC+TGG | + | chr2_3:25714947-25714966 | Msa0285730:intron | 30.0% |
| AATTGTTGAGGAGAAAAGTA+GGG | - | chr2_3:25715009-25715028 | None:intergenic | 30.0% | |
| GTTCTATTATGCAATGAATC+AGG | - | chr2_3:25715163-25715182 | None:intergenic | 30.0% | |
| TTATCTTCTTAGTTGAGAAC+CGG | + | chr2_3:25715262-25715281 | Msa0285730:intron | 30.0% | |
| ! | TATACTTGTTACTTCTTTGG+TGG | + | chr2_3:25715364-25715383 | Msa0285730:intron | 30.0% |
| GTTGTTAAGGGATAGAATAA+AGG | + | chr2_3:25715447-25715466 | Msa0285730:intron | 30.0% | |
| ! | TTGTTACTTGTTAGAGTAGT+TGG | + | chr2_3:25715491-25715510 | Msa0285730:intron | 30.0% |
| ! | CTTCTTTTCAATTCAACACT+TGG | + | chr2_3:25715661-25715680 | Msa0285730:intron | 30.0% |
| TGGATTGCTAACATTATCAT+AGG | + | chr2_3:25715681-25715700 | Msa0285730:intron | 30.0% | |
| TAATTTCGCTTATGACAGAA+AGG | - | chr2_3:25715796-25715815 | None:intergenic | 30.0% | |
| TGGTCTATGTCAGATATAAT+AGG | - | chr2_3:25715933-25715952 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTTTTGGCTTTTC+TGG | + | chr2_3:25716025-25716044 | Msa0285730:intron | 30.0% |
| ! | TTTTTCTGAATTCTGAACCT+TGG | + | chr2_3:25716073-25716092 | Msa0285730:intron | 30.0% |
| ! | TGATTGAACAACAAAAGCAT+AGG | + | chr2_3:25716174-25716193 | Msa0285730:intron | 30.0% |
| TCTGTTCTGTATGAAATCAT+TGG | + | chr2_3:25716237-25716256 | Msa0285730:intron | 30.0% | |
| TGTGTATAACCAAATTGAAC+AGG | + | chr2_3:25716373-25716392 | Msa0285730:intron | 30.0% | |
| GTGTATAACCAAATTGAACA+GGG | + | chr2_3:25716374-25716393 | Msa0285730:intron | 30.0% | |
| TCTCGCTGAAAAATATGTAA+TGG | - | chr2_3:25716439-25716458 | None:intergenic | 30.0% | |
| !! | TATTTTTCAGCGAGATTTTG+AGG | + | chr2_3:25716444-25716463 | Msa0285730:intron | 30.0% |
| ! | GTTGCAGATTTTTATTGAAC+TGG | - | chr2_3:25716583-25716602 | None:intergenic | 30.0% |
| GTGTATATGCTACATTAATG+GGG | - | chr2_3:25716608-25716627 | None:intergenic | 30.0% | |
| CAGTGTATATGCTACATTAA+TGG | - | chr2_3:25716610-25716629 | None:intergenic | 30.0% | |
| TTCAAAGAACTTAGTCATCA+AGG | + | chr2_3:25716737-25716756 | Msa0285730:intron | 30.0% | |
| ! | GCTTTTTGTGTTTGTTTGAA+TGG | + | chr2_3:25716769-25716788 | Msa0285730:intron | 30.0% |
| TGAGTTGTATTAGCAATCAT+TGG | - | chr2_3:25716913-25716932 | None:intergenic | 30.0% | |
| AGCTTACCATCTTCTATAAT+GGG | + | chr2_3:25716932-25716951 | Msa0285730:CDS | 30.0% | |
| AATACTCCCATTATAGAAGA+TGG | - | chr2_3:25716941-25716960 | None:intergenic | 30.0% | |
| CACACGAGACATATAAATTA+TGG | - | chr2_3:25717465-25717484 | None:intergenic | 30.0% | |
| CATAATTTATATGTCTCGTG+TGG | + | chr2_3:25717463-25717482 | Msa0285730:intron | 30.0% | |
| TTCAAATGTTTCTTCAGAAG+CGG | + | chr2_3:25717536-25717555 | Msa0285730:CDS | 30.0% | |
| TTTATGTTTGTACTACAGGT+TGG | + | chr2_3:25717629-25717648 | Msa0285730:intron | 30.0% | |
| TTATGTTTGTACTACAGGTT+GGG | + | chr2_3:25717630-25717649 | Msa0285730:intron | 30.0% | |
| CTTTATGTGTTCTTTCAGTA+AGG | + | chr2_3:25717819-25717838 | Msa0285730:three_prime_UTR | 30.0% | |
| GTAAGAATGAAAAAACAGGA+AGG | - | chr2_3:25718112-25718131 | None:intergenic | 30.0% | |
| TTACCAAAACAGTGATTCAT+AGG | + | chr2_3:25718128-25718147 | Msa0285730:three_prime_UTR | 30.0% | |
| ! | TAACCTATGAATCACTGTTT+TGG | - | chr2_3:25718134-25718153 | None:intergenic | 30.0% |
| GTTAAGCTTGAAGTTGTTAT+TGG | + | chr2_3:25718150-25718169 | Msa0285730:three_prime_UTR | 30.0% | |
| ! | CACATGTTGCTTAAAGTAAC+CGG | + | chr2_3:25714176-25714195 | Msa0285730:five_prime_UTR | 35.0% |
| AAAGTAACCGGCAATGATTA+TGG | + | chr2_3:25714188-25714207 | Msa0285730:five_prime_UTR | 35.0% | |
| TTGTAGGGTTCTTCAAGAAA+TGG | + | chr2_3:25714345-25714364 | Msa0285730:exon | 35.0% | |
| !! | AATGGATGGTGTTACTGTTA+AGG | + | chr2_3:25714363-25714382 | Msa0285730:exon | 35.0% |
| ! | TCTAGAACAGTAAACTTCTC+TGG | - | chr2_3:25714394-25714413 | None:intergenic | 35.0% |
| ! | AAAGACATACTTGTTTGCTG+AGG | - | chr2_3:25714479-25714498 | None:intergenic | 35.0% |
| CAATTGTTGAGGAGAAAAGT+AGG | - | chr2_3:25715010-25715029 | None:intergenic | 35.0% | |
| !! | CTACTTTTCTCCTCAACAAT+TGG | + | chr2_3:25715008-25715027 | Msa0285730:intron | 35.0% |
| GAAACAAACACCAATTGTTG+AGG | - | chr2_3:25715021-25715040 | None:intergenic | 35.0% | |
| ! | TTTCTTGTTTGTGTTGAGCA+TGG | + | chr2_3:25715056-25715075 | Msa0285730:intron | 35.0% |
| GCTCATAGTCATTGATAAGT+GGG | + | chr2_3:25715078-25715097 | Msa0285730:intron | 35.0% | |
| TAGTTGAGATCAGAATTCTG+AGG | - | chr2_3:25715346-25715365 | None:intergenic | 35.0% | |
| ! | AGAGTAGTTGGTTAGCTATT+TGG | + | chr2_3:25715503-25715522 | Msa0285730:intron | 35.0% |
| ! | AGTTGGTTAGCTATTTGGTT+AGG | + | chr2_3:25715508-25715527 | Msa0285730:intron | 35.0% |
| AGTAGTGACTCTATTGTGAA+AGG | + | chr2_3:25715584-25715603 | Msa0285730:intron | 35.0% | |
| GTAGTGACTCTATTGTGAAA+GGG | + | chr2_3:25715585-25715604 | Msa0285730:intron | 35.0% | |
| ! | GTCAGATATAATAGGTGTTG+TGG | - | chr2_3:25715925-25715944 | None:intergenic | 35.0% |
| ! | ATACATGACAGGGGATATTT+TGG | + | chr2_3:25716008-25716027 | Msa0285730:intron | 35.0% |
| !!! | CAGGGGATATTTTGGTTTTT+TGG | + | chr2_3:25716016-25716035 | Msa0285730:intron | 35.0% |
| TGAAACACTGGAAATCTCAA+TGG | - | chr2_3:25716203-25716222 | None:intergenic | 35.0% | |
| ! | ACTTTTGTCCCTGTTCAATT+TGG | - | chr2_3:25716385-25716404 | None:intergenic | 35.0% |
| AGGCTTCTTCATGCATATTA+TGG | + | chr2_3:25716464-25716483 | Msa0285730:intron | 35.0% | |
| !! | TTTCCACGTTTGTGTTTTGA+AGG | + | chr2_3:25716556-25716575 | Msa0285730:intron | 35.0% |
| !! | TTCCACGTTTGTGTTTTGAA+GGG | + | chr2_3:25716557-25716576 | Msa0285730:intron | 35.0% |
| CAGCTTACCATCTTCTATAA+TGG | + | chr2_3:25716931-25716950 | Msa0285730:CDS | 35.0% | |
| !! | GGGAGTATTTGTATCTATGA+TGG | + | chr2_3:25716952-25716971 | Msa0285730:CDS | 35.0% |
| ATTTCGATTGTGTCGTAACA+TGG | - | chr2_3:25717152-25717171 | None:intergenic | 35.0% | |
| ATATTATCAGCAGTTCCATG+TGG | - | chr2_3:25717316-25717335 | None:intergenic | 35.0% | |
| ATAGAACTCTTTGCAGGAAA+GGG | - | chr2_3:25717358-25717377 | None:intergenic | 35.0% | |
| TAGTCGAAGATATGACTAGT+AGG | - | chr2_3:25717406-25717425 | None:intergenic | 35.0% | |
| ! | CACAAAATTTGAAACATGGC+AGG | - | chr2_3:25717580-25717599 | None:intergenic | 35.0% |
| !!! | TTGTCAGCTACCTTTGTTTT+TGG | - | chr2_3:25717681-25717700 | None:intergenic | 35.0% |
| TTGAGCAGAATTCTAGTGTT+TGG | + | chr2_3:25717791-25717810 | Msa0285730:exon | 35.0% | |
| ! | TTGTTATTGGATCCCAAGAA+TGG | + | chr2_3:25718163-25718182 | Msa0285730:three_prime_UTR | 35.0% |
| TAACCGGCAATGATTATGGT+TGG | + | chr2_3:25714192-25714211 | Msa0285730:five_prime_UTR | 40.0% | |
| TGACCAACCATAATCATTGC+CGG | - | chr2_3:25714198-25714217 | None:intergenic | 40.0% | |
| AGGGTTCTTCAAGAAATGGA+TGG | + | chr2_3:25714349-25714368 | Msa0285730:exon | 40.0% | |
| ! | TCTTCTCCTATTGCTGTTGA+TGG | + | chr2_3:25714415-25714434 | Msa0285730:CDS | 40.0% |
| GGCTCATAGTCATTGATAAG+TGG | + | chr2_3:25715077-25715096 | Msa0285730:intron | 40.0% | |
| TCTTTGGTGGAACCTTTCTA+CGG | + | chr2_3:25715377-25715396 | Msa0285730:intron | 40.0% | |
| CATCTGATTGTACCGTAGAA+AGG | - | chr2_3:25715392-25715411 | None:intergenic | 40.0% | |
| GTAGGAGTCTTCTTCTTCAA+GGG | - | chr2_3:25715614-25715633 | None:intergenic | 40.0% | |
| AGTAGGAGTCTTCTTCTTCA+AGG | - | chr2_3:25715615-25715634 | None:intergenic | 40.0% | |
| ACCTTGGTATGTATCCTTCA+CGG | + | chr2_3:25715766-25715785 | Msa0285730:intron | 40.0% | |
| ! | ATAATAGGTGTTGTGGCCTA+CGG | - | chr2_3:25715918-25715937 | None:intergenic | 40.0% |
| AGACCACATCACCATGTTTA+TGG | + | chr2_3:25715947-25715966 | Msa0285730:intron | 40.0% | |
| CCAACAATCCACCATAAACA+TGG | - | chr2_3:25715961-25715980 | None:intergenic | 40.0% | |
| !! | CCATGTTTATGGTGGATTGT+TGG | + | chr2_3:25715958-25715977 | Msa0285730:intron | 40.0% |
| TATCTGCAGATGGCAGATTA+TGG | - | chr2_3:25715991-25716010 | None:intergenic | 40.0% | |
| TCATACAGAACAGAACAGAG+AGG | - | chr2_3:25716231-25716250 | None:intergenic | 40.0% | |
| GCAGTCAAAAACTGTTGATG+CGG | + | chr2_3:25716493-25716512 | Msa0285730:intron | 40.0% | |
| ATGCTACACAACCGTGATTA+AGG | - | chr2_3:25716519-25716538 | None:intergenic | 40.0% | |
| ! | CTCCTTGTACTGAGTTTTCT+AGG | + | chr2_3:25716670-25716689 | Msa0285730:intron | 40.0% |
| AGCCTAGAAAACTCAGTACA+AGG | - | chr2_3:25716675-25716694 | None:intergenic | 40.0% | |
| TTTAGGTCAATGCCAGCATT+TGG | + | chr2_3:25716880-25716899 | Msa0285730:intron | 40.0% | |
| ATTGGATTCGTTCCAAATGC+TGG | - | chr2_3:25716895-25716914 | None:intergenic | 40.0% | |
| TGATGGAATTCCTGCAGAAA+AGG | + | chr2_3:25716969-25716988 | Msa0285730:CDS | 40.0% | |
| CTTCTTCGTTTCACTAGACT+TGG | - | chr2_3:25717236-25717255 | None:intergenic | 40.0% | |
| TGATAATATCGCTTCACCAC+AGG | + | chr2_3:25717327-25717346 | Msa0285730:CDS | 40.0% | |
| GATAGAACTCTTTGCAGGAA+AGG | - | chr2_3:25717359-25717378 | None:intergenic | 40.0% | |
| AACAAAGGTAGCTGACAACA+TGG | + | chr2_3:25717683-25717702 | Msa0285730:CDS | 40.0% | |
| GACAACATGGAGAACAACTT+CGG | + | chr2_3:25717696-25717715 | Msa0285730:CDS | 40.0% | |
| TCCTTCATTGAAACCGAATC+TGG | - | chr2_3:25717735-25717754 | None:intergenic | 40.0% | |
| GGTTTCAATGAAGGAACCAA+TGG | + | chr2_3:25717740-25717759 | Msa0285730:CDS | 40.0% | |
| GTTGGCTGAAATTCTTCCAT+TGG | - | chr2_3:25717759-25717778 | None:intergenic | 40.0% | |
| GCTCAAGATGCAGATATAGT+TGG | - | chr2_3:25717777-25717796 | None:intergenic | 40.0% | |
| CTAGCACCATCAACAGCAAT+AGG | - | chr2_3:25714424-25714443 | None:intergenic | 45.0% | |
| ! | TGATGGTGCTAGTTCCAACA+TGG | + | chr2_3:25714432-25714451 | Msa0285730:CDS | 45.0% |
| TGCTAGTTCCAACATGGTTG+AGG | + | chr2_3:25714438-25714457 | Msa0285730:CDS | 45.0% | |
| GCTAGTTCCAACATGGTTGA+GGG | + | chr2_3:25714439-25714458 | Msa0285730:CDS | 45.0% | |
| CTAGTTCCAACATGGTTGAG+GGG | + | chr2_3:25714440-25714459 | Msa0285730:CDS | 45.0% | |
| TGTTGAGGAGAAAAGTAGGG+TGG | - | chr2_3:25715006-25715025 | None:intergenic | 45.0% | |
| GTACATCTCTAACAGTCGAG+TGG | - | chr2_3:25715196-25715215 | None:intergenic | 45.0% | |
| GTTAGAGATGTACGCGCAAT+TGG | + | chr2_3:25715203-25715222 | Msa0285730:intron | 45.0% | |
| !! | GTTGAGAACCGGATTTGCTA+TGG | + | chr2_3:25715273-25715292 | Msa0285730:intron | 45.0% |
| ACCGTGAAGGATACATACCA+AGG | - | chr2_3:25715770-25715789 | None:intergenic | 45.0% | |
| ! | CCACCATAAACATGGTGATG+TGG | - | chr2_3:25715953-25715972 | None:intergenic | 45.0% |
| CCACATCACCATGTTTATGG+TGG | + | chr2_3:25715950-25715969 | Msa0285730:intron | 45.0% | |
| CCATCTGCAGATACATGACA+GGG | + | chr2_3:25715998-25716017 | Msa0285730:intron | 45.0% | |
| CATCTGCAGATACATGACAG+GGG | + | chr2_3:25715999-25716018 | Msa0285730:intron | 45.0% | |
| ! | AGAGAGGTATGCTGAAACAC+TGG | - | chr2_3:25716215-25716234 | None:intergenic | 45.0% |
| TGTTGATGCGGCCTTAATCA+CGG | + | chr2_3:25716505-25716524 | Msa0285730:intron | 45.0% | |
| AACAGGTGAAGGAACAGGAA+CGG | - | chr2_3:25717275-25717294 | None:intergenic | 45.0% | |
| TTCCTTCACCTGTTCCTTCA+AGG | + | chr2_3:25717281-25717300 | Msa0285730:CDS | 45.0% | |
| CTGCAGATAGAACTCTTTGC+AGG | - | chr2_3:25717364-25717383 | None:intergenic | 45.0% | |
| CTGCAAAGAGTTCTATCTGC+AGG | + | chr2_3:25717362-25717381 | Msa0285730:CDS | 45.0% | |
| AGTGAATGTCTGCGTGCTAT+TGG | - | chr2_3:25717517-25717536 | None:intergenic | 45.0% | |
| !!! | GTTTTTGGCGAGGAAGGATA+GGG | - | chr2_3:25717666-25717685 | None:intergenic | 45.0% |
| !!! | TGTTTTTGGCGAGGAAGGAT+AGG | - | chr2_3:25717667-25717686 | None:intergenic | 45.0% |
| TCCTTCCTCGCCAAAAACAA+AGG | + | chr2_3:25717668-25717687 | Msa0285730:CDS | 45.0% | |
| !!! | ACCTTTGTTTTTGGCGAGGA+AGG | - | chr2_3:25717672-25717691 | None:intergenic | 45.0% |
| !!! | AGCTACCTTTGTTTTTGGCG+AGG | - | chr2_3:25717676-25717695 | None:intergenic | 45.0% |
| TGCTGACAATTCGCCAGATT+CGG | + | chr2_3:25717719-25717738 | Msa0285730:CDS | 45.0% | |
| ! | GCCAGATTCGGTTTCAATGA+AGG | + | chr2_3:25717731-25717750 | Msa0285730:CDS | 45.0% |
| ACTTCGAAGTTGCATCTCTC+TGG | + | chr2_3:25717949-25717968 | Msa0285730:three_prime_UTR | 45.0% | |
| CATTGACCCCTCAACCATGT+TGG | - | chr2_3:25714449-25714468 | None:intergenic | 50.0% | |
| GACAGAAAGGTCAACCGTGA+AGG | - | chr2_3:25715783-25715802 | None:intergenic | 50.0% | |
| CTGCAGATGGCAGATTATGG+TGG | - | chr2_3:25715988-25716007 | None:intergenic | 50.0% | |
| GCCATCTGCAGATACATGAC+AGG | + | chr2_3:25715997-25716016 | Msa0285730:intron | 50.0% | |
| CCCTGTCATGTATCTGCAGA+TGG | - | chr2_3:25716001-25716020 | None:intergenic | 50.0% | |
| GGCCCTTCAAAACACAAACG+TGG | - | chr2_3:25716562-25716581 | None:intergenic | 50.0% | |
| ACAGGTGAAGGAACAGGAAC+GGG | - | chr2_3:25717274-25717293 | None:intergenic | 50.0% | |
| GAAGGAACAGGTGAAGGAAC+AGG | - | chr2_3:25717280-25717299 | None:intergenic | 50.0% | |
| GAAGAAGGCCTTGAAGGAAC+AGG | - | chr2_3:25717292-25717311 | None:intergenic | 50.0% | |
| GAACTCTTTGCAGGAAAGGG+AGG | - | chr2_3:25717355-25717374 | None:intergenic | 50.0% | |
| AGTTCTATCTGCAGGCTGCA+AGG | + | chr2_3:25717370-25717389 | Msa0285730:CDS | 50.0% | |
| ! | CGTAGGGCTACCTTTTCTGC+AGG | - | chr2_3:25716982-25717001 | None:intergenic | 55.0% |
| GGCCTTGAAGGAACAGGTGA+AGG | - | chr2_3:25717286-25717305 | None:intergenic | 55.0% | |
| TGTGGCGAAGAAGGCCTTGA+AGG | - | chr2_3:25717298-25717317 | None:intergenic | 55.0% | |
| TCAAGGCCTTCTTCGCCACA+TGG | + | chr2_3:25717298-25717317 | Msa0285730:CDS | 55.0% | |
| GCAGTTCCATGTGGCGAAGA+AGG | - | chr2_3:25717307-25717326 | None:intergenic | 55.0% | |
| TTCTTCAGAAGCGGCGAGAC+AGG | + | chr2_3:25717545-25717564 | Msa0285730:CDS | 55.0% | |
| TGAGCACCACCAATGTGCCG+TGG | + | chr2_3:25715886-25715905 | Msa0285730:intron | 60.0% | |
| TAGCTGCCACGGCACATTGG+TGG | - | chr2_3:25715895-25715914 | None:intergenic | 60.0% | |
| CGGTAGCTGCCACGGCACAT+TGG | - | chr2_3:25715898-25715917 | None:intergenic | 65.0% | |
| TGTGCCGTGGCAGCTACCGT+AGG | + | chr2_3:25715899-25715918 | Msa0285730:intron | 65.0% | |
| GTGGCCTACGGTAGCTGCCA+CGG | - | chr2_3:25715906-25715925 | None:intergenic | 65.0% | |
| !! | GCAGGAAAGGGAGGTGCCTG+TGG | - | chr2_3:25717346-25717365 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 25714150 | 25718193 | 25714150 | ID=Msa0285730;Name=Msa0285730 |
| chr2_3 | mRNA | 25714150 | 25718193 | 25714150 | ID=Msa0285730-mRNA-1;Parent=Msa0285730;Name=Msa0285730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=214|1|1|1|1|1|5|399|209 |
| chr2_3 | exon | 25714150 | 25714488 | 25714150 | ID=Msa0285730-mRNA-1:exon:9508;Parent=Msa0285730-mRNA-1 |
| chr2_3 | exon | 25716885 | 25716990 | 25716885 | ID=Msa0285730-mRNA-1:exon:9509;Parent=Msa0285730-mRNA-1 |
| chr2_3 | exon | 25717199 | 25717391 | 25717199 | ID=Msa0285730-mRNA-1:exon:9510;Parent=Msa0285730-mRNA-1 |
| chr2_3 | exon | 25717509 | 25717566 | 25717509 | ID=Msa0285730-mRNA-1:exon:9511;Parent=Msa0285730-mRNA-1 |
| chr2_3 | exon | 25717647 | 25718193 | 25717647 | ID=Msa0285730-mRNA-1:exon:9512;Parent=Msa0285730-mRNA-1 |
| chr2_3 | five_prime_UTR | 25714150 | 25714363 | 25714150 | ID=Msa0285730-mRNA-1:five_prime_utr;Parent=Msa0285730-mRNA-1 |
| chr2_3 | CDS | 25714364 | 25714488 | 25714364 | ID=Msa0285730-mRNA-1:cds;Parent=Msa0285730-mRNA-1 |
| chr2_3 | CDS | 25716885 | 25716990 | 25716885 | ID=Msa0285730-mRNA-1:cds;Parent=Msa0285730-mRNA-1 |
| chr2_3 | CDS | 25717199 | 25717391 | 25717199 | ID=Msa0285730-mRNA-1:cds;Parent=Msa0285730-mRNA-1 |
| chr2_3 | CDS | 25717509 | 25717566 | 25717509 | ID=Msa0285730-mRNA-1:cds;Parent=Msa0285730-mRNA-1 |
| chr2_3 | CDS | 25717647 | 25717794 | 25717647 | ID=Msa0285730-mRNA-1:cds;Parent=Msa0285730-mRNA-1 |
| chr2_3 | three_prime_UTR | 25717795 | 25718193 | 25717795 | ID=Msa0285730-mRNA-1:three_prime_utr;Parent=Msa0285730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
