AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0288840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288840 MtrunA17_Chr2g0284491 99.138 116 1 0 1 116 1 116 6.48e-80 230
Msa0288840 MtrunA17_Chr4g0071441 39.773 88 53 0 27 114 13 100 1.58e-15 67.0
Msa0288840 MtrunA17_Chr2g0299011 38.235 102 52 2 13 114 11 101 3.20e-15 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0288840 AT3G29170.1 69.421 121 32 3 1 116 1 121 5.89e-41 132
Msa0288840 AT3G29170.2 69.421 121 32 3 1 116 1 121 5.89e-41 132
Msa0288840 AT2G19350.1 40.777 103 50 2 13 115 11 102 6.46e-17 70.5
Msa0288840 AT4G29850.1 46.753 77 41 0 38 114 25 101 1.64e-16 69.7

Find 65 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTCTTCCTGTTGTTTCT+TGG 0.192760 2_3:+34860804 Msa0288840:CDS
ATTAAAATAGGCTCAGTTTA+AGG 0.207799 2_3:-34862285 None:intergenic
TGATTCCACATAATTAAAAT+AGG 0.284354 2_3:-34862297 None:intergenic
TTCCTGTTGTTTCTTGGTAC+TGG 0.301691 2_3:+34860810 Msa0288840:CDS
TTGCGACAAAGGTAAGAAAT+TGG 0.302756 2_3:+34859943 None:intergenic
GCTTATGGCCTTCTAGCATT+AGG 0.311927 2_3:+34860891 Msa0288840:CDS
ATTAAATAAAATTGTACAAT+GGG 0.322830 2_3:+34862130 Msa0288840:three_prime_UTR
ACTCATCTGCTCTAGTAATC+AGG 0.341410 2_3:-34862050 None:intergenic
TGCAAGGGCAATAGATTTCC+AGG 0.357241 2_3:-34860784 None:intergenic
GAACTCAGAAATATTTGATA+TGG 0.357772 2_3:+34860644 Msa0288840:exon
TCCAAGTCGTGATCAGATTT+CGG 0.394709 2_3:+34862080 Msa0288840:three_prime_UTR
GGAGAACGCTCTCAAGCTTA+TGG 0.407602 2_3:+34860876 Msa0288840:CDS
ATAACCTTTGGCACCTCTCC+AGG 0.443432 2_3:-34862012 None:intergenic
CCTGTCACATTGGTTTGTCA+AGG 0.450401 2_3:+34862337 Msa0288840:three_prime_UTR
TGGCGGCTGATAACGAATTC+CGG 0.451983 2_3:-34860093 None:intergenic
GGAACTCTGTCCAAGGCTCT+TGG 0.459555 2_3:-34860762 None:intergenic
TCAGAAATCCTAATGCTAGA+AGG 0.461382 2_3:-34860899 None:intergenic
GGCAGAAAAGCGATAACCTT+TGG 0.470024 2_3:-34862024 None:intergenic
GTCCAGTACCAAGAAACAAC+AGG 0.478983 2_3:-34860812 None:intergenic
CTCGACTTGCGTATTATGCC+TGG 0.479144 2_3:+34861994 Msa0288840:CDS
TAATCAAATCGAGGGTCAAA+TGG 0.486596 2_3:-34860735 None:intergenic
CAAAGCCAAAGTGGAAAAGA+TGG 0.490050 2_3:-34860016 None:intergenic
TGATTACACACCAAGAGCCT+TGG 0.499077 2_3:+34860752 Msa0288840:CDS
CTCATCTGCTCTAGTAATCA+GGG 0.506727 2_3:-34862049 None:intergenic
GCTGTGTTTATTTGAGCCGA+GGG 0.512700 2_3:+34860579 Msa0288840:five_prime_UTR
CATCCTCATCTGTGGCAAGA+GGG 0.516381 2_3:-34860689 None:intergenic
ACTGTACTTTCCTGTCACAT+TGG 0.520487 2_3:+34862327 Msa0288840:three_prime_UTR
GATTAAATAAAATTGTACAA+TGG 0.524142 2_3:+34862129 Msa0288840:three_prime_UTR
GAAACAACAGGAAGAGTGCA+AGG 0.526346 2_3:-34860800 None:intergenic
GGCTGTGTTTATTTGAGCCG+AGG 0.535343 2_3:+34860578 Msa0288840:five_prime_UTR
GAAATTGGTAAAATTATGAC+GGG 0.539361 2_3:+34859958 Msa0288840:five_prime_UTR
GAAATCTGATCACGACTTGG+AGG 0.543109 2_3:-34862078 None:intergenic
TTATCAGCCGCCAGAAACAC+CGG 0.543339 2_3:+34860103 Msa0288840:five_prime_UTR
AGAAATTGGTAAAATTATGA+CGG 0.552391 2_3:+34859957 Msa0288840:five_prime_UTR
CCTTGACAAACCAATGTGAC+AGG 0.561193 2_3:-34862337 None:intergenic
GAGCCTTGGACAGAGTTCCC+TGG 0.576818 2_3:+34860766 Msa0288840:CDS
ATCCTCATCTGTGGCAAGAG+GGG 0.579989 2_3:-34860688 None:intergenic
TATCATATACAAAGCCAAAG+TGG 0.581481 2_3:-34860025 None:intergenic
GGATTTCTGAGCTTCCTCCC+AGG 0.584958 2_3:+34860912 Msa0288840:CDS
GAAAATCGTAGGAGCAAGCA+AGG 0.590931 2_3:+34860622 Msa0288840:five_prime_UTR
AATAACAGTAAAATCTAGCG+TGG 0.600826 2_3:+34862221 Msa0288840:three_prime_UTR
TTAAATAAAATTGTACAATG+GGG 0.601904 2_3:+34862131 Msa0288840:three_prime_UTR
AAGTCGCCAGAAAACGCAGC+CGG 0.604726 2_3:+34860074 Msa0288840:five_prime_UTR
CGTAGCTGTAATTCTAACAC+GGG 0.607384 2_3:+34860557 Msa0288840:five_prime_UTR
TCATCCTCATCTGTGGCAAG+AGG 0.609309 2_3:-34860690 None:intergenic
CACCCCTCTTGCCACAGATG+AGG 0.620897 2_3:+34860686 Msa0288840:CDS
AAACAACAGGAAGAGTGCAA+GGG 0.621765 2_3:-34860799 None:intergenic
ACCGAAATCTGATCACGACT+TGG 0.622904 2_3:-34862081 None:intergenic
TACAGCTACGACTAAGCACA+AGG 0.623151 2_3:-34860544 None:intergenic
TGTGTTTATTTGAGCCGAGG+GGG 0.628105 2_3:+34860581 Msa0288840:five_prime_UTR
TATGCCTGGAGAGGTGCCAA+AGG 0.628849 2_3:+34862008 Msa0288840:CDS
CTTGGTGTGTAATCAAATCG+AGG 0.631421 2_3:-34860744 None:intergenic
TCGTAGCTGTAATTCTAACA+CGG 0.637497 2_3:+34860556 Msa0288840:five_prime_UTR
AAATCTGATCACGACTTGGA+GGG 0.638029 2_3:-34862077 None:intergenic
TTTCCAGGGAACTCTGTCCA+AGG 0.638212 2_3:-34860769 None:intergenic
CTTGCGTATTATGCCTGGAG+AGG 0.644764 2_3:+34861999 Msa0288840:CDS
AACGTAATCATCCTCATCTG+TGG 0.648920 2_3:-34860697 None:intergenic
CTGTGTTTATTTGAGCCGAG+GGG 0.653999 2_3:+34860580 Msa0288840:five_prime_UTR
TCTGCTCTAGTAATCAGGGA+TGG 0.656012 2_3:-34862045 None:intergenic
TTGGTGTGTAATCAAATCGA+GGG 0.657279 2_3:-34860743 None:intergenic
GCAAGGGCAATAGATTTCCA+GGG 0.694017 2_3:-34860783 None:intergenic
ACAGATGAGGATGATTACGT+TGG 0.696064 2_3:+34860699 Msa0288840:CDS
ACAGCTACGACTAAGCACAA+GGG 0.733846 2_3:-34860543 None:intergenic
GGGACTTCAACGTACCTGGG+AGG 0.737742 2_3:-34860926 None:intergenic
ATGGATGAGGAAAACCTGGG+CGG 0.761931 2_3:-34860133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAATATAAACATCA+GGG + chr2_3:34860998-34861017 Msa0288840:intron 10.0%
!! ATTAAATAAAATTGTACAAT+GGG + chr2_3:34862130-34862149 Msa0288840:three_prime_UTR 10.0%
!! TTTAATTAATATAAACATCA+GGG + chr2_3:34860998-34861017 Msa0288840:intron 10.0%
!! ATTAAATAAAATTGTACAAT+GGG + chr2_3:34862130-34862149 Msa0288840:three_prime_UTR 10.0%
!! GTTTAATTAATATAAACATC+AGG + chr2_3:34860997-34861016 Msa0288840:intron 15.0%
!! TTTCAATGAATCATAAAAAA+TGG + chr2_3:34861305-34861324 Msa0288840:intron 15.0%
!! GATTAAATAAAATTGTACAA+TGG + chr2_3:34862129-34862148 Msa0288840:three_prime_UTR 15.0%
!! TTAAATAAAATTGTACAATG+GGG + chr2_3:34862131-34862150 Msa0288840:three_prime_UTR 15.0%
!! GTTTAATTAATATAAACATC+AGG + chr2_3:34860997-34861016 Msa0288840:intron 15.0%
!! TTTCAATGAATCATAAAAAA+TGG + chr2_3:34861305-34861324 Msa0288840:intron 15.0%
!! GATTAAATAAAATTGTACAA+TGG + chr2_3:34862129-34862148 Msa0288840:three_prime_UTR 15.0%
!! TTAAATAAAATTGTACAATG+GGG + chr2_3:34862131-34862150 Msa0288840:three_prime_UTR 15.0%
!! AGAAATTGGTAAAATTATGA+CGG + chr2_3:34859957-34859976 Msa0288840:five_prime_UTR 20.0%
!! ATGAATCTGAGAATATAAAA+CGG - chr2_3:34860167-34860186 None:intergenic 20.0%
!!! TATACATTTTTATGTTTGCT+AGG + chr2_3:34860967-34860986 Msa0288840:intron 20.0%
!!! AAAAGATAATGGTACATATA+AGG - chr2_3:34861288-34861307 None:intergenic 20.0%
!! ATGATTCATTGAAAAGATAA+TGG - chr2_3:34861299-34861318 None:intergenic 20.0%
!!! AAAAAATGGTTCTAATGTAA+TGG + chr2_3:34861319-34861338 Msa0288840:intron 20.0%
!!! GTTAAATAACTCAAACTTTT+TGG + chr2_3:34861677-34861696 Msa0288840:intron 20.0%
!! TGTATTCAGAAATCAATATA+AGG - chr2_3:34861961-34861980 None:intergenic 20.0%
!!! TTATATTGATTTCTGAATAC+AGG + chr2_3:34861960-34861979 Msa0288840:intron 20.0%
!! TGATTCCACATAATTAAAAT+AGG - chr2_3:34862300-34862319 None:intergenic 20.0%
!! AGAAATTGGTAAAATTATGA+CGG + chr2_3:34859957-34859976 Msa0288840:five_prime_UTR 20.0%
!! ATGAATCTGAGAATATAAAA+CGG - chr2_3:34860167-34860186 None:intergenic 20.0%
!!! TATACATTTTTATGTTTGCT+AGG + chr2_3:34860967-34860986 Msa0288840:intron 20.0%
!!! AAAAGATAATGGTACATATA+AGG - chr2_3:34861288-34861307 None:intergenic 20.0%
!! ATGATTCATTGAAAAGATAA+TGG - chr2_3:34861299-34861318 None:intergenic 20.0%
!!! AAAAAATGGTTCTAATGTAA+TGG + chr2_3:34861319-34861338 Msa0288840:intron 20.0%
!!! GTTAAATAACTCAAACTTTT+TGG + chr2_3:34861677-34861696 Msa0288840:intron 20.0%
!! TGTATTCAGAAATCAATATA+AGG - chr2_3:34861961-34861980 None:intergenic 20.0%
!!! TTATATTGATTTCTGAATAC+AGG + chr2_3:34861960-34861979 Msa0288840:intron 20.0%
!! TGATTCCACATAATTAAAAT+AGG - chr2_3:34862300-34862319 None:intergenic 20.0%
! GAAATTGGTAAAATTATGAC+GGG + chr2_3:34859958-34859977 Msa0288840:five_prime_UTR 25.0%
!!! TTTGTTTGTTTGTTGTTTTG+TGG - chr2_3:34859993-34860012 None:intergenic 25.0%
! ATATAAAACGGAAAAAGGAA+TGG - chr2_3:34860155-34860174 None:intergenic 25.0%
! TGAGAATATAAAACGGAAAA+AGG - chr2_3:34860160-34860179 None:intergenic 25.0%
! TTATATTCTCAGATTCATTC+AGG + chr2_3:34860169-34860188 Msa0288840:intron 25.0%
!!! ATCTAGTTTTGATTTTGTGA+TGG + chr2_3:34860223-34860242 Msa0288840:intron 25.0%
! AATTCTGATAGAAATTGTGT+TGG + chr2_3:34860321-34860340 Msa0288840:intron 25.0%
! TTTCGTACACATGTAATATT+AGG + chr2_3:34860442-34860461 Msa0288840:intron 25.0%
! GAACTCAGAAATATTTGATA+TGG + chr2_3:34860644-34860663 Msa0288840:exon 25.0%
!!! TTTATTTTCACTGGTCATAT+GGG + chr2_3:34860852-34860871 Msa0288840:CDS 25.0%
! ATGTTATGCTATATACATCA+AGG + chr2_3:34861088-34861107 Msa0288840:intron 25.0%
! CTTTAGCAAAATCATCTTTA+TGG - chr2_3:34861115-34861134 None:intergenic 25.0%
! AGAAAAATAAACCAGCATAT+TGG + chr2_3:34861153-34861172 Msa0288840:intron 25.0%
! TTCTAAATGTTCAGATGATT+TGG + chr2_3:34861185-34861204 Msa0288840:intron 25.0%
!! AATGTTTCTGCTTATTATAC+AGG + chr2_3:34861392-34861411 Msa0288840:intron 25.0%
! TATCATGTGCAATTATACTT+TGG - chr2_3:34861437-34861456 None:intergenic 25.0%
! TATAATTGCACATGATAGAT+AGG + chr2_3:34861440-34861459 Msa0288840:intron 25.0%
! TCTGTAATACTTTAATCCTA+GGG - chr2_3:34861532-34861551 None:intergenic 25.0%
! ATCTGTAATACTTTAATCCT+AGG - chr2_3:34861533-34861552 None:intergenic 25.0%
!! TAGGATTAAAGTATTACAGA+TGG + chr2_3:34861532-34861551 Msa0288840:intron 25.0%
! ATCAATAGTTATTGTTGAAG+TGG + chr2_3:34861701-34861720 Msa0288840:intron 25.0%
! TCAATAGTTATTGTTGAAGT+GGG + chr2_3:34861702-34861721 Msa0288840:intron 25.0%
!!! TTTCGCATATTAGTTTGTAA+TGG - chr2_3:34861790-34861809 None:intergenic 25.0%
! AGCTAAAGAACAAATAAAAC+AGG - chr2_3:34861838-34861857 None:intergenic 25.0%
! ATTAAAATAGGCTCAGTTTA+AGG - chr2_3:34862288-34862307 None:intergenic 25.0%
! GAAATTGGTAAAATTATGAC+GGG + chr2_3:34859958-34859977 Msa0288840:five_prime_UTR 25.0%
!!! TTTGTTTGTTTGTTGTTTTG+TGG - chr2_3:34859993-34860012 None:intergenic 25.0%
! ATATAAAACGGAAAAAGGAA+TGG - chr2_3:34860155-34860174 None:intergenic 25.0%
! TGAGAATATAAAACGGAAAA+AGG - chr2_3:34860160-34860179 None:intergenic 25.0%
! TTATATTCTCAGATTCATTC+AGG + chr2_3:34860169-34860188 Msa0288840:intron 25.0%
!!! ATCTAGTTTTGATTTTGTGA+TGG + chr2_3:34860223-34860242 Msa0288840:intron 25.0%
! AATTCTGATAGAAATTGTGT+TGG + chr2_3:34860321-34860340 Msa0288840:intron 25.0%
! TTTCGTACACATGTAATATT+AGG + chr2_3:34860442-34860461 Msa0288840:intron 25.0%
! GAACTCAGAAATATTTGATA+TGG + chr2_3:34860644-34860663 Msa0288840:exon 25.0%
!!! TTTATTTTCACTGGTCATAT+GGG + chr2_3:34860852-34860871 Msa0288840:CDS 25.0%
! ATGTTATGCTATATACATCA+AGG + chr2_3:34861088-34861107 Msa0288840:intron 25.0%
! CTTTAGCAAAATCATCTTTA+TGG - chr2_3:34861115-34861134 None:intergenic 25.0%
! AGAAAAATAAACCAGCATAT+TGG + chr2_3:34861153-34861172 Msa0288840:intron 25.0%
! TTCTAAATGTTCAGATGATT+TGG + chr2_3:34861185-34861204 Msa0288840:intron 25.0%
!! AATGTTTCTGCTTATTATAC+AGG + chr2_3:34861392-34861411 Msa0288840:intron 25.0%
! TATCATGTGCAATTATACTT+TGG - chr2_3:34861437-34861456 None:intergenic 25.0%
! TATAATTGCACATGATAGAT+AGG + chr2_3:34861440-34861459 Msa0288840:intron 25.0%
! TCTGTAATACTTTAATCCTA+GGG - chr2_3:34861532-34861551 None:intergenic 25.0%
! ATCTGTAATACTTTAATCCT+AGG - chr2_3:34861533-34861552 None:intergenic 25.0%
!! TAGGATTAAAGTATTACAGA+TGG + chr2_3:34861532-34861551 Msa0288840:intron 25.0%
! ATCAATAGTTATTGTTGAAG+TGG + chr2_3:34861701-34861720 Msa0288840:intron 25.0%
! TCAATAGTTATTGTTGAAGT+GGG + chr2_3:34861702-34861721 Msa0288840:intron 25.0%
!!! TTTCGCATATTAGTTTGTAA+TGG - chr2_3:34861790-34861809 None:intergenic 25.0%
! AGCTAAAGAACAAATAAAAC+AGG - chr2_3:34861838-34861857 None:intergenic 25.0%
! ATTAAAATAGGCTCAGTTTA+AGG - chr2_3:34862288-34862307 None:intergenic 25.0%
! AAAAACCATCTTTTCCACTT+TGG + chr2_3:34860011-34860030 Msa0288840:five_prime_UTR 30.0%
TATCATATACAAAGCCAAAG+TGG - chr2_3:34860028-34860047 None:intergenic 30.0%
!!! AAAATCCCCTTTTTTTGATG+AGG + chr2_3:34860197-34860216 Msa0288840:intron 30.0%
ATCTTCCTCATCAAAAAAAG+GGG - chr2_3:34860205-34860224 None:intergenic 30.0%
GATCTTCCTCATCAAAAAAA+GGG - chr2_3:34860206-34860225 None:intergenic 30.0%
AGATCTTCCTCATCAAAAAA+AGG - chr2_3:34860207-34860226 None:intergenic 30.0%
!! TGATGGATAATTTTGTCTTG+TGG + chr2_3:34860240-34860259 Msa0288840:intron 30.0%
TTGAGTGCAAAATGAGAATT+AGG + chr2_3:34860270-34860289 Msa0288840:intron 30.0%
! TTGAATGTAATCACGTGTTT+TGG + chr2_3:34860419-34860438 Msa0288840:intron 30.0%
!!! CTTTCGTACTTTATTTTCAC+TGG + chr2_3:34860843-34860862 Msa0288840:CDS 30.0%
!!! CTTTATTTTCACTGGTCATA+TGG + chr2_3:34860851-34860870 Msa0288840:CDS 30.0%
! TTATTTTCACTGGTCATATG+GGG + chr2_3:34860853-34860872 Msa0288840:CDS 30.0%
ATACAAGTGATACAAATTCC+CGG - chr2_3:34860950-34860969 None:intergenic 30.0%
! TTTATGTTTGCTAGGTACTT+TGG + chr2_3:34860975-34860994 Msa0288840:intron 30.0%
CATCTGAACATTTAGAAAGT+TGG - chr2_3:34861182-34861201 None:intergenic 30.0%
! AGATAATGGTACATATAAGG+AGG - chr2_3:34861285-34861304 None:intergenic 30.0%
AACAATCTACATGCAATTCT+TGG - chr2_3:34861364-34861383 None:intergenic 30.0%
ATTGCATGTAGATTGTTTCA+TGG + chr2_3:34861367-34861386 Msa0288840:intron 30.0%
TTGCATGTAGATTGTTTCAT+GGG + chr2_3:34861368-34861387 Msa0288840:intron 30.0%
CTGTAATACTTTAATCCTAG+GGG - chr2_3:34861531-34861550 None:intergenic 30.0%
GTAAAGCATATGTAAGTGTT+GGG - chr2_3:34861617-34861636 None:intergenic 30.0%
ATCAATATGAACATGAATGC+AGG - chr2_3:34861895-34861914 None:intergenic 30.0%
AATAACAGTAAAATCTAGCG+TGG + chr2_3:34862221-34862240 Msa0288840:three_prime_UTR 30.0%
!!! CTGAGCCTATTTTAATTATG+TGG + chr2_3:34862292-34862311 Msa0288840:three_prime_UTR 30.0%
! AAAAACCATCTTTTCCACTT+TGG + chr2_3:34860011-34860030 Msa0288840:five_prime_UTR 30.0%
TATCATATACAAAGCCAAAG+TGG - chr2_3:34860028-34860047 None:intergenic 30.0%
!!! AAAATCCCCTTTTTTTGATG+AGG + chr2_3:34860197-34860216 Msa0288840:intron 30.0%
ATCTTCCTCATCAAAAAAAG+GGG - chr2_3:34860205-34860224 None:intergenic 30.0%
GATCTTCCTCATCAAAAAAA+GGG - chr2_3:34860206-34860225 None:intergenic 30.0%
AGATCTTCCTCATCAAAAAA+AGG - chr2_3:34860207-34860226 None:intergenic 30.0%
!! TGATGGATAATTTTGTCTTG+TGG + chr2_3:34860240-34860259 Msa0288840:intron 30.0%
TTGAGTGCAAAATGAGAATT+AGG + chr2_3:34860270-34860289 Msa0288840:intron 30.0%
! TTGAATGTAATCACGTGTTT+TGG + chr2_3:34860419-34860438 Msa0288840:intron 30.0%
!!! CTTTCGTACTTTATTTTCAC+TGG + chr2_3:34860843-34860862 Msa0288840:CDS 30.0%
!!! CTTTATTTTCACTGGTCATA+TGG + chr2_3:34860851-34860870 Msa0288840:CDS 30.0%
! TTATTTTCACTGGTCATATG+GGG + chr2_3:34860853-34860872 Msa0288840:CDS 30.0%
ATACAAGTGATACAAATTCC+CGG - chr2_3:34860950-34860969 None:intergenic 30.0%
! TTTATGTTTGCTAGGTACTT+TGG + chr2_3:34860975-34860994 Msa0288840:intron 30.0%
CATCTGAACATTTAGAAAGT+TGG - chr2_3:34861182-34861201 None:intergenic 30.0%
! AGATAATGGTACATATAAGG+AGG - chr2_3:34861285-34861304 None:intergenic 30.0%
AACAATCTACATGCAATTCT+TGG - chr2_3:34861364-34861383 None:intergenic 30.0%
ATTGCATGTAGATTGTTTCA+TGG + chr2_3:34861367-34861386 Msa0288840:intron 30.0%
TTGCATGTAGATTGTTTCAT+GGG + chr2_3:34861368-34861387 Msa0288840:intron 30.0%
CTGTAATACTTTAATCCTAG+GGG - chr2_3:34861531-34861550 None:intergenic 30.0%
GTAAAGCATATGTAAGTGTT+GGG - chr2_3:34861617-34861636 None:intergenic 30.0%
ATCAATATGAACATGAATGC+AGG - chr2_3:34861895-34861914 None:intergenic 30.0%
AATAACAGTAAAATCTAGCG+TGG + chr2_3:34862221-34862240 Msa0288840:three_prime_UTR 30.0%
!!! CTGAGCCTATTTTAATTATG+TGG + chr2_3:34862292-34862311 Msa0288840:three_prime_UTR 30.0%
AATGTTGTGTCCTATGTCTT+TGG - chr2_3:34860357-34860376 None:intergenic 35.0%
TCGTAGCTGTAATTCTAACA+CGG + chr2_3:34860556-34860575 Msa0288840:five_prime_UTR 35.0%
!!! CATTTTGGGTTGAAAATCGT+AGG + chr2_3:34860611-34860630 Msa0288840:five_prime_UTR 35.0%
TAATCAAATCGAGGGTCAAA+TGG - chr2_3:34860738-34860757 None:intergenic 35.0%
TTGGTGTGTAATCAAATCGA+GGG - chr2_3:34860746-34860765 None:intergenic 35.0%
! TATTTTCACTGGTCATATGG+GGG + chr2_3:34860854-34860873 Msa0288840:CDS 35.0%
TCAGAAATCCTAATGCTAGA+AGG - chr2_3:34860902-34860921 None:intergenic 35.0%
TACAAGTGATACAAATTCCC+GGG - chr2_3:34860949-34860968 None:intergenic 35.0%
ATGCAATTCTTGGTTAGGAT+CGG - chr2_3:34861354-34861373 None:intergenic 35.0%
TCTACATGCAATTCTTGGTT+AGG - chr2_3:34861359-34861378 None:intergenic 35.0%
! AAAGTATTACAGATGGTAGC+AGG + chr2_3:34861539-34861558 Msa0288840:intron 35.0%
AAGTATTACAGATGGTAGCA+GGG + chr2_3:34861540-34861559 Msa0288840:intron 35.0%
GGTAAAGCATATGTAAGTGT+TGG - chr2_3:34861618-34861637 None:intergenic 35.0%
CTTACATATGCTTTACCACT+AGG + chr2_3:34861621-34861640 Msa0288840:intron 35.0%
!! CGCATATTAGTTTGTAATGG+TGG - chr2_3:34861787-34861806 None:intergenic 35.0%
!!! GTCTTGCTACTTTTTGTTAG+TGG + chr2_3:34861864-34861883 Msa0288840:intron 35.0%
!!! CTGTCACGATGATTTTTTGT+TGG + chr2_3:34861919-34861938 Msa0288840:intron 35.0%
AATGTTGTGTCCTATGTCTT+TGG - chr2_3:34860357-34860376 None:intergenic 35.0%
TCGTAGCTGTAATTCTAACA+CGG + chr2_3:34860556-34860575 Msa0288840:five_prime_UTR 35.0%
!!! CATTTTGGGTTGAAAATCGT+AGG + chr2_3:34860611-34860630 Msa0288840:five_prime_UTR 35.0%
TAATCAAATCGAGGGTCAAA+TGG - chr2_3:34860738-34860757 None:intergenic 35.0%
TTGGTGTGTAATCAAATCGA+GGG - chr2_3:34860746-34860765 None:intergenic 35.0%
! TATTTTCACTGGTCATATGG+GGG + chr2_3:34860854-34860873 Msa0288840:CDS 35.0%
TCAGAAATCCTAATGCTAGA+AGG - chr2_3:34860902-34860921 None:intergenic 35.0%
TACAAGTGATACAAATTCCC+GGG - chr2_3:34860949-34860968 None:intergenic 35.0%
ATGCAATTCTTGGTTAGGAT+CGG - chr2_3:34861354-34861373 None:intergenic 35.0%
TCTACATGCAATTCTTGGTT+AGG - chr2_3:34861359-34861378 None:intergenic 35.0%
! AAAGTATTACAGATGGTAGC+AGG + chr2_3:34861539-34861558 Msa0288840:intron 35.0%
AAGTATTACAGATGGTAGCA+GGG + chr2_3:34861540-34861559 Msa0288840:intron 35.0%
GGTAAAGCATATGTAAGTGT+TGG - chr2_3:34861618-34861637 None:intergenic 35.0%
CTTACATATGCTTTACCACT+AGG + chr2_3:34861621-34861640 Msa0288840:intron 35.0%
!! CGCATATTAGTTTGTAATGG+TGG - chr2_3:34861787-34861806 None:intergenic 35.0%
!!! GTCTTGCTACTTTTTGTTAG+TGG + chr2_3:34861864-34861883 Msa0288840:intron 35.0%
!!! CTGTCACGATGATTTTTTGT+TGG + chr2_3:34861919-34861938 Msa0288840:intron 35.0%
CAAAGCCAAAGTGGAAAAGA+TGG - chr2_3:34860019-34860038 None:intergenic 40.0%
AACGGAAAAAGGAATGGATG+AGG - chr2_3:34860149-34860168 None:intergenic 40.0%
AGCCTATGAACCAAAGACAT+AGG + chr2_3:34860344-34860363 Msa0288840:intron 40.0%
! GTCCTATGTCTTTGGTTCAT+AGG - chr2_3:34860349-34860368 None:intergenic 40.0%
CGTAGCTGTAATTCTAACAC+GGG + chr2_3:34860557-34860576 Msa0288840:five_prime_UTR 40.0%
AACGTAATCATCCTCATCTG+TGG - chr2_3:34860700-34860719 None:intergenic 40.0%
ACAGATGAGGATGATTACGT+TGG + chr2_3:34860699-34860718 Msa0288840:CDS 40.0%
! CTTGGTGTGTAATCAAATCG+AGG - chr2_3:34860747-34860766 None:intergenic 40.0%
! AAACAACAGGAAGAGTGCAA+GGG - chr2_3:34860802-34860821 None:intergenic 40.0%
!! TTCCTGTTGTTTCTTGGTAC+TGG + chr2_3:34860810-34860829 Msa0288840:CDS 40.0%
! ATTTTCACTGGTCATATGGG+GGG + chr2_3:34860855-34860874 Msa0288840:CDS 40.0%
AAAGTTGGAGTCCAATATGC+TGG - chr2_3:34861167-34861186 None:intergenic 40.0%
TGCACATGATAGATAGGTCT+AGG + chr2_3:34861446-34861465 Msa0288840:intron 40.0%
!! AGGGGCATATTTTAAGTGGT+GGG - chr2_3:34861513-34861532 None:intergenic 40.0%
!! TAGGGGCATATTTTAAGTGG+TGG - chr2_3:34861514-34861533 None:intergenic 40.0%
ACCACTTAAAATATGCCCCT+AGG + chr2_3:34861513-34861532 Msa0288840:intron 40.0%
!! TCCTAGGGGCATATTTTAAG+TGG - chr2_3:34861517-34861536 None:intergenic 40.0%
AGTATTACAGATGGTAGCAG+GGG + chr2_3:34861541-34861560 Msa0288840:intron 40.0%
!! AAGCATATGTAAGTGTTGGG+TGG - chr2_3:34861614-34861633 None:intergenic 40.0%
TTACCACTAGGCTATGTTCT+TGG + chr2_3:34861633-34861652 Msa0288840:intron 40.0%
TACCACTAGGCTATGTTCTT+GGG + chr2_3:34861634-34861653 Msa0288840:intron 40.0%
AGTTATTGTTGAAGTGGGTC+AGG + chr2_3:34861707-34861726 Msa0288840:intron 40.0%
GAGAAAATGGGCATGGAATA+AGG + chr2_3:34861729-34861748 Msa0288840:intron 40.0%
GATCTCCATCGCTAGTATTA+AGG + chr2_3:34861758-34861777 Msa0288840:intron 40.0%
CTCATCTGCTCTAGTAATCA+GGG - chr2_3:34862052-34862071 None:intergenic 40.0%
ACTCATCTGCTCTAGTAATC+AGG - chr2_3:34862053-34862072 None:intergenic 40.0%
! AAATCTGATCACGACTTGGA+GGG - chr2_3:34862080-34862099 None:intergenic 40.0%
TCCAAGTCGTGATCAGATTT+CGG + chr2_3:34862080-34862099 Msa0288840:three_prime_UTR 40.0%
ACTGTACTTTCCTGTCACAT+TGG + chr2_3:34862327-34862346 Msa0288840:three_prime_UTR 40.0%
CAAAGCCAAAGTGGAAAAGA+TGG - chr2_3:34860019-34860038 None:intergenic 40.0%
AACGGAAAAAGGAATGGATG+AGG - chr2_3:34860149-34860168 None:intergenic 40.0%
AGCCTATGAACCAAAGACAT+AGG + chr2_3:34860344-34860363 Msa0288840:intron 40.0%
! GTCCTATGTCTTTGGTTCAT+AGG - chr2_3:34860349-34860368 None:intergenic 40.0%
CGTAGCTGTAATTCTAACAC+GGG + chr2_3:34860557-34860576 Msa0288840:five_prime_UTR 40.0%
AACGTAATCATCCTCATCTG+TGG - chr2_3:34860700-34860719 None:intergenic 40.0%
ACAGATGAGGATGATTACGT+TGG + chr2_3:34860699-34860718 Msa0288840:CDS 40.0%
! CTTGGTGTGTAATCAAATCG+AGG - chr2_3:34860747-34860766 None:intergenic 40.0%
! AAACAACAGGAAGAGTGCAA+GGG - chr2_3:34860802-34860821 None:intergenic 40.0%
!! TTCCTGTTGTTTCTTGGTAC+TGG + chr2_3:34860810-34860829 Msa0288840:CDS 40.0%
! ATTTTCACTGGTCATATGGG+GGG + chr2_3:34860855-34860874 Msa0288840:CDS 40.0%
AAAGTTGGAGTCCAATATGC+TGG - chr2_3:34861167-34861186 None:intergenic 40.0%
TGCACATGATAGATAGGTCT+AGG + chr2_3:34861446-34861465 Msa0288840:intron 40.0%
!! AGGGGCATATTTTAAGTGGT+GGG - chr2_3:34861513-34861532 None:intergenic 40.0%
!! TAGGGGCATATTTTAAGTGG+TGG - chr2_3:34861514-34861533 None:intergenic 40.0%
ACCACTTAAAATATGCCCCT+AGG + chr2_3:34861513-34861532 Msa0288840:intron 40.0%
!! TCCTAGGGGCATATTTTAAG+TGG - chr2_3:34861517-34861536 None:intergenic 40.0%
AGTATTACAGATGGTAGCAG+GGG + chr2_3:34861541-34861560 Msa0288840:intron 40.0%
!! AAGCATATGTAAGTGTTGGG+TGG - chr2_3:34861614-34861633 None:intergenic 40.0%
TTACCACTAGGCTATGTTCT+TGG + chr2_3:34861633-34861652 Msa0288840:intron 40.0%
TACCACTAGGCTATGTTCTT+GGG + chr2_3:34861634-34861653 Msa0288840:intron 40.0%
AGTTATTGTTGAAGTGGGTC+AGG + chr2_3:34861707-34861726 Msa0288840:intron 40.0%
GAGAAAATGGGCATGGAATA+AGG + chr2_3:34861729-34861748 Msa0288840:intron 40.0%
GATCTCCATCGCTAGTATTA+AGG + chr2_3:34861758-34861777 Msa0288840:intron 40.0%
CTCATCTGCTCTAGTAATCA+GGG - chr2_3:34862052-34862071 None:intergenic 40.0%
ACTCATCTGCTCTAGTAATC+AGG - chr2_3:34862053-34862072 None:intergenic 40.0%
! AAATCTGATCACGACTTGGA+GGG - chr2_3:34862080-34862099 None:intergenic 40.0%
TCCAAGTCGTGATCAGATTT+CGG + chr2_3:34862080-34862099 Msa0288840:three_prime_UTR 40.0%
ACTGTACTTTCCTGTCACAT+TGG + chr2_3:34862327-34862346 Msa0288840:three_prime_UTR 40.0%
!! TTTTCTGGCGACTTGGAGTT+CGG - chr2_3:34860068-34860087 None:intergenic 45.0%
!!! ACTTTTTCCGGTGTTTCTGG+CGG - chr2_3:34860113-34860132 None:intergenic 45.0%
GGAATGGATGAGGAAAACCT+GGG - chr2_3:34860139-34860158 None:intergenic 45.0%
AGGAATGGATGAGGAAAACC+TGG - chr2_3:34860140-34860159 None:intergenic 45.0%
ACAGCTACGACTAAGCACAA+GGG - chr2_3:34860546-34860565 None:intergenic 45.0%
TACAGCTACGACTAAGCACA+AGG - chr2_3:34860547-34860566 None:intergenic 45.0%
GCTGTGTTTATTTGAGCCGA+GGG + chr2_3:34860579-34860598 Msa0288840:five_prime_UTR 45.0%
CTGTGTTTATTTGAGCCGAG+GGG + chr2_3:34860580-34860599 Msa0288840:five_prime_UTR 45.0%
TGTGTTTATTTGAGCCGAGG+GGG + chr2_3:34860581-34860600 Msa0288840:five_prime_UTR 45.0%
GAAAATCGTAGGAGCAAGCA+AGG + chr2_3:34860622-34860641 Msa0288840:five_prime_UTR 45.0%
TGATTACACACCAAGAGCCT+TGG + chr2_3:34860752-34860771 Msa0288840:CDS 45.0%
GCAAGGGCAATAGATTTCCA+GGG - chr2_3:34860786-34860805 None:intergenic 45.0%
TGCAAGGGCAATAGATTTCC+AGG - chr2_3:34860787-34860806 None:intergenic 45.0%
! GAAACAACAGGAAGAGTGCA+AGG - chr2_3:34860803-34860822 None:intergenic 45.0%
!! GCACTCTTCCTGTTGTTTCT+TGG + chr2_3:34860804-34860823 Msa0288840:CDS 45.0%
GTCCAGTACCAAGAAACAAC+AGG - chr2_3:34860815-34860834 None:intergenic 45.0%
GCTTATGGCCTTCTAGCATT+AGG + chr2_3:34860891-34860910 Msa0288840:CDS 45.0%
GTGTACACGGGTTTGAACAT+GGG + chr2_3:34861578-34861597 Msa0288840:intron 45.0%
!! TGTAAGTGTTGGGTGGAAAC+CGG - chr2_3:34861607-34861626 None:intergenic 45.0%
ACCACTAGGCTATGTTCTTG+GGG + chr2_3:34861635-34861654 Msa0288840:intron 45.0%
TGAAGTGGGTCAGGAGAAAA+TGG + chr2_3:34861716-34861735 Msa0288840:intron 45.0%
GAAGTGGGTCAGGAGAAAAT+GGG + chr2_3:34861717-34861736 Msa0288840:intron 45.0%
AATGGGCATGGAATAAGGAC+AGG + chr2_3:34861734-34861753 Msa0288840:intron 45.0%
GGTGACCTTAATACTAGCGA+TGG - chr2_3:34861766-34861785 None:intergenic 45.0%
GGCAGAAAAGCGATAACCTT+TGG - chr2_3:34862027-34862046 None:intergenic 45.0%
TCTGCTCTAGTAATCAGGGA+TGG - chr2_3:34862048-34862067 None:intergenic 45.0%
! GAAATCTGATCACGACTTGG+AGG - chr2_3:34862081-34862100 None:intergenic 45.0%
ACCGAAATCTGATCACGACT+TGG - chr2_3:34862084-34862103 None:intergenic 45.0%
CCTTGACAAACCAATGTGAC+AGG - chr2_3:34862340-34862359 None:intergenic 45.0%
!! CCTGTCACATTGGTTTGTCA+AGG + chr2_3:34862337-34862356 Msa0288840:three_prime_UTR 45.0%
!! TTTTCTGGCGACTTGGAGTT+CGG - chr2_3:34860068-34860087 None:intergenic 45.0%
!!! ACTTTTTCCGGTGTTTCTGG+CGG - chr2_3:34860113-34860132 None:intergenic 45.0%
GGAATGGATGAGGAAAACCT+GGG - chr2_3:34860139-34860158 None:intergenic 45.0%
AGGAATGGATGAGGAAAACC+TGG - chr2_3:34860140-34860159 None:intergenic 45.0%
ACAGCTACGACTAAGCACAA+GGG - chr2_3:34860546-34860565 None:intergenic 45.0%
TACAGCTACGACTAAGCACA+AGG - chr2_3:34860547-34860566 None:intergenic 45.0%
GCTGTGTTTATTTGAGCCGA+GGG + chr2_3:34860579-34860598 Msa0288840:five_prime_UTR 45.0%
CTGTGTTTATTTGAGCCGAG+GGG + chr2_3:34860580-34860599 Msa0288840:five_prime_UTR 45.0%
TGTGTTTATTTGAGCCGAGG+GGG + chr2_3:34860581-34860600 Msa0288840:five_prime_UTR 45.0%
GAAAATCGTAGGAGCAAGCA+AGG + chr2_3:34860622-34860641 Msa0288840:five_prime_UTR 45.0%
TGATTACACACCAAGAGCCT+TGG + chr2_3:34860752-34860771 Msa0288840:CDS 45.0%
GCAAGGGCAATAGATTTCCA+GGG - chr2_3:34860786-34860805 None:intergenic 45.0%
TGCAAGGGCAATAGATTTCC+AGG - chr2_3:34860787-34860806 None:intergenic 45.0%
! GAAACAACAGGAAGAGTGCA+AGG - chr2_3:34860803-34860822 None:intergenic 45.0%
!! GCACTCTTCCTGTTGTTTCT+TGG + chr2_3:34860804-34860823 Msa0288840:CDS 45.0%
GTCCAGTACCAAGAAACAAC+AGG - chr2_3:34860815-34860834 None:intergenic 45.0%
GCTTATGGCCTTCTAGCATT+AGG + chr2_3:34860891-34860910 Msa0288840:CDS 45.0%
GTGTACACGGGTTTGAACAT+GGG + chr2_3:34861578-34861597 Msa0288840:intron 45.0%
!! TGTAAGTGTTGGGTGGAAAC+CGG - chr2_3:34861607-34861626 None:intergenic 45.0%
ACCACTAGGCTATGTTCTTG+GGG + chr2_3:34861635-34861654 Msa0288840:intron 45.0%
TGAAGTGGGTCAGGAGAAAA+TGG + chr2_3:34861716-34861735 Msa0288840:intron 45.0%
GAAGTGGGTCAGGAGAAAAT+GGG + chr2_3:34861717-34861736 Msa0288840:intron 45.0%
AATGGGCATGGAATAAGGAC+AGG + chr2_3:34861734-34861753 Msa0288840:intron 45.0%
GGTGACCTTAATACTAGCGA+TGG - chr2_3:34861766-34861785 None:intergenic 45.0%
GGCAGAAAAGCGATAACCTT+TGG - chr2_3:34862027-34862046 None:intergenic 45.0%
TCTGCTCTAGTAATCAGGGA+TGG - chr2_3:34862048-34862067 None:intergenic 45.0%
! GAAATCTGATCACGACTTGG+AGG - chr2_3:34862081-34862100 None:intergenic 45.0%
ACCGAAATCTGATCACGACT+TGG - chr2_3:34862084-34862103 None:intergenic 45.0%
CCTTGACAAACCAATGTGAC+AGG - chr2_3:34862340-34862359 None:intergenic 45.0%
!! CCTGTCACATTGGTTTGTCA+AGG + chr2_3:34862337-34862356 Msa0288840:three_prime_UTR 45.0%
! TGGCGGCTGATAACGAATTC+CGG - chr2_3:34860096-34860115 None:intergenic 50.0%
TTATCAGCCGCCAGAAACAC+CGG + chr2_3:34860103-34860122 Msa0288840:five_prime_UTR 50.0%
!! CGGACTTTTTCCGGTGTTTC+TGG - chr2_3:34860116-34860135 None:intergenic 50.0%
!! AAACCTGGGCGGACTTTTTC+CGG - chr2_3:34860125-34860144 None:intergenic 50.0%
ATGGATGAGGAAAACCTGGG+CGG - chr2_3:34860136-34860155 None:intergenic 50.0%
GGCTGTGTTTATTTGAGCCG+AGG + chr2_3:34860578-34860597 Msa0288840:five_prime_UTR 50.0%
ATCCTCATCTGTGGCAAGAG+GGG - chr2_3:34860691-34860710 None:intergenic 50.0%
CATCCTCATCTGTGGCAAGA+GGG - chr2_3:34860692-34860711 None:intergenic 50.0%
TCATCCTCATCTGTGGCAAG+AGG - chr2_3:34860693-34860712 None:intergenic 50.0%
TTTCCAGGGAACTCTGTCCA+AGG - chr2_3:34860772-34860791 None:intergenic 50.0%
GGAGAACGCTCTCAAGCTTA+TGG + chr2_3:34860876-34860895 Msa0288840:CDS 50.0%
TAGCAGGGGAGCAGGAAAAT+GGG + chr2_3:34861555-34861574 Msa0288840:intron 50.0%
GCAGGAAAATGGGGTGTACA+CGG + chr2_3:34861565-34861584 Msa0288840:intron 50.0%
CAGGAAAATGGGGTGTACAC+GGG + chr2_3:34861566-34861585 Msa0288840:intron 50.0%
GGTGTACACGGGTTTGAACA+TGG + chr2_3:34861577-34861596 Msa0288840:intron 50.0%
!! GTAAGTGTTGGGTGGAAACC+GGG - chr2_3:34861606-34861625 None:intergenic 50.0%
! CTCGACTTGCGTATTATGCC+TGG + chr2_3:34861994-34862013 Msa0288840:CDS 50.0%
CTTGCGTATTATGCCTGGAG+AGG + chr2_3:34861999-34862018 Msa0288840:CDS 50.0%
ATAACCTTTGGCACCTCTCC+AGG - chr2_3:34862015-34862034 None:intergenic 50.0%
! TGGCGGCTGATAACGAATTC+CGG - chr2_3:34860096-34860115 None:intergenic 50.0%
TTATCAGCCGCCAGAAACAC+CGG + chr2_3:34860103-34860122 Msa0288840:five_prime_UTR 50.0%
!! CGGACTTTTTCCGGTGTTTC+TGG - chr2_3:34860116-34860135 None:intergenic 50.0%
!! AAACCTGGGCGGACTTTTTC+CGG - chr2_3:34860125-34860144 None:intergenic 50.0%
ATGGATGAGGAAAACCTGGG+CGG - chr2_3:34860136-34860155 None:intergenic 50.0%
GGCTGTGTTTATTTGAGCCG+AGG + chr2_3:34860578-34860597 Msa0288840:five_prime_UTR 50.0%
ATCCTCATCTGTGGCAAGAG+GGG - chr2_3:34860691-34860710 None:intergenic 50.0%
CATCCTCATCTGTGGCAAGA+GGG - chr2_3:34860692-34860711 None:intergenic 50.0%
TCATCCTCATCTGTGGCAAG+AGG - chr2_3:34860693-34860712 None:intergenic 50.0%
TTTCCAGGGAACTCTGTCCA+AGG - chr2_3:34860772-34860791 None:intergenic 50.0%
GGAGAACGCTCTCAAGCTTA+TGG + chr2_3:34860876-34860895 Msa0288840:CDS 50.0%
TAGCAGGGGAGCAGGAAAAT+GGG + chr2_3:34861555-34861574 Msa0288840:intron 50.0%
GCAGGAAAATGGGGTGTACA+CGG + chr2_3:34861565-34861584 Msa0288840:intron 50.0%
CAGGAAAATGGGGTGTACAC+GGG + chr2_3:34861566-34861585 Msa0288840:intron 50.0%
GGTGTACACGGGTTTGAACA+TGG + chr2_3:34861577-34861596 Msa0288840:intron 50.0%
!! GTAAGTGTTGGGTGGAAACC+GGG - chr2_3:34861606-34861625 None:intergenic 50.0%
! CTCGACTTGCGTATTATGCC+TGG + chr2_3:34861994-34862013 Msa0288840:CDS 50.0%
CTTGCGTATTATGCCTGGAG+AGG + chr2_3:34861999-34862018 Msa0288840:CDS 50.0%
ATAACCTTTGGCACCTCTCC+AGG - chr2_3:34862015-34862034 None:intergenic 50.0%
AAGTCGCCAGAAAACGCAGC+CGG + chr2_3:34860074-34860093 Msa0288840:five_prime_UTR 55.0%
! CGAATTCCGGCTGCGTTTTC+TGG - chr2_3:34860083-34860102 None:intergenic 55.0%
TTATTTGAGCCGAGGGGGCT+CGG + chr2_3:34860586-34860605 Msa0288840:five_prime_UTR 55.0%
CAAAATGATCCGAGCCCCCT+CGG - chr2_3:34860598-34860617 None:intergenic 55.0%
! GAGGGGGCTCGGATCATTTT+GGG + chr2_3:34860597-34860616 Msa0288840:five_prime_UTR 55.0%
GGAACTCTGTCCAAGGCTCT+TGG - chr2_3:34860765-34860784 None:intergenic 55.0%
GGATTTCTGAGCTTCCTCCC+AGG + chr2_3:34860912-34860931 Msa0288840:CDS 55.0%
TCCCAGGTACGTTGAAGTCC+CGG + chr2_3:34860928-34860947 Msa0288840:intron 55.0%
GTAGCAGGGGAGCAGGAAAA+TGG + chr2_3:34861554-34861573 Msa0288840:intron 55.0%
AGCAGGGGAGCAGGAAAATG+GGG + chr2_3:34861556-34861575 Msa0288840:intron 55.0%
GCCCCAAGAACATAGCCTAG+TGG - chr2_3:34861639-34861658 None:intergenic 55.0%
GGGTCAGGAGAAAATGGGCA+TGG + chr2_3:34861722-34861741 Msa0288840:intron 55.0%
!! TATGCCTGGAGAGGTGCCAA+AGG + chr2_3:34862008-34862027 Msa0288840:CDS 55.0%
AAGTCGCCAGAAAACGCAGC+CGG + chr2_3:34860074-34860093 Msa0288840:five_prime_UTR 55.0%
! CGAATTCCGGCTGCGTTTTC+TGG - chr2_3:34860083-34860102 None:intergenic 55.0%
TTATTTGAGCCGAGGGGGCT+CGG + chr2_3:34860586-34860605 Msa0288840:five_prime_UTR 55.0%
CAAAATGATCCGAGCCCCCT+CGG - chr2_3:34860598-34860617 None:intergenic 55.0%
! GAGGGGGCTCGGATCATTTT+GGG + chr2_3:34860597-34860616 Msa0288840:five_prime_UTR 55.0%
GGAACTCTGTCCAAGGCTCT+TGG - chr2_3:34860765-34860784 None:intergenic 55.0%
GGATTTCTGAGCTTCCTCCC+AGG + chr2_3:34860912-34860931 Msa0288840:CDS 55.0%
TCCCAGGTACGTTGAAGTCC+CGG + chr2_3:34860928-34860947 Msa0288840:intron 55.0%
GTAGCAGGGGAGCAGGAAAA+TGG + chr2_3:34861554-34861573 Msa0288840:intron 55.0%
AGCAGGGGAGCAGGAAAATG+GGG + chr2_3:34861556-34861575 Msa0288840:intron 55.0%
GCCCCAAGAACATAGCCTAG+TGG - chr2_3:34861639-34861658 None:intergenic 55.0%
GGGTCAGGAGAAAATGGGCA+TGG + chr2_3:34861722-34861741 Msa0288840:intron 55.0%
!! TATGCCTGGAGAGGTGCCAA+AGG + chr2_3:34862008-34862027 Msa0288840:CDS 55.0%
!! GGCTGCGTTTTCTGGCGACT+TGG - chr2_3:34860075-34860094 None:intergenic 60.0%
ACACCGGAAAAAGTCCGCCC+AGG + chr2_3:34860119-34860138 Msa0288840:five_prime_UTR 60.0%
! CGAGGGGGCTCGGATCATTT+TGG + chr2_3:34860596-34860615 Msa0288840:five_prime_UTR 60.0%
CACCCCTCTTGCCACAGATG+AGG + chr2_3:34860686-34860705 Msa0288840:CDS 60.0%
GAGCCTTGGACAGAGTTCCC+TGG + chr2_3:34860766-34860785 Msa0288840:CDS 60.0%
GGGACTTCAACGTACCTGGG+AGG - chr2_3:34860929-34860948 None:intergenic 60.0%
CCCGGGACTTCAACGTACCT+GGG - chr2_3:34860932-34860951 None:intergenic 60.0%
CCCAGGTACGTTGAAGTCCC+GGG + chr2_3:34860929-34860948 Msa0288840:intron 60.0%
TCCCGGGACTTCAACGTACC+TGG - chr2_3:34860933-34860952 None:intergenic 60.0%
ACAGATGGTAGCAGGGGAGC+AGG + chr2_3:34861547-34861566 Msa0288840:intron 60.0%
CGGGTTTGAACATGGGCTCC+CGG + chr2_3:34861585-34861604 Msa0288840:intron 60.0%
!! GGCTGCGTTTTCTGGCGACT+TGG - chr2_3:34860075-34860094 None:intergenic 60.0%
ACACCGGAAAAAGTCCGCCC+AGG + chr2_3:34860119-34860138 Msa0288840:five_prime_UTR 60.0%
! CGAGGGGGCTCGGATCATTT+TGG + chr2_3:34860596-34860615 Msa0288840:five_prime_UTR 60.0%
CACCCCTCTTGCCACAGATG+AGG + chr2_3:34860686-34860705 Msa0288840:CDS 60.0%
GAGCCTTGGACAGAGTTCCC+TGG + chr2_3:34860766-34860785 Msa0288840:CDS 60.0%
GGGACTTCAACGTACCTGGG+AGG - chr2_3:34860929-34860948 None:intergenic 60.0%
CCCGGGACTTCAACGTACCT+GGG - chr2_3:34860932-34860951 None:intergenic 60.0%
CCCAGGTACGTTGAAGTCCC+GGG + chr2_3:34860929-34860948 Msa0288840:intron 60.0%
TCCCGGGACTTCAACGTACC+TGG - chr2_3:34860933-34860952 None:intergenic 60.0%
ACAGATGGTAGCAGGGGAGC+AGG + chr2_3:34861547-34861566 Msa0288840:intron 60.0%
CGGGTTTGAACATGGGCTCC+CGG + chr2_3:34861585-34861604 Msa0288840:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 34859949 34862370 34859949 ID=Msa0288840;Name=Msa0288840
chr2_3 mRNA 34859949 34862370 34859949 ID=Msa0288840-mRNA-1;Parent=Msa0288840;Name=Msa0288840-mRNA-1;_AED=0.28;_eAED=0.28;_QI=321|1|1|1|0.5|0.33|3|309|116
chr2_3 exon 34859949 34860140 34859949 ID=Msa0288840-mRNA-1:exon:11275;Parent=Msa0288840-mRNA-1
chr2_3 exon 34860534 34860933 34860534 ID=Msa0288840-mRNA-1:exon:11276;Parent=Msa0288840-mRNA-1
chr2_3 exon 34861982 34862370 34861982 ID=Msa0288840-mRNA-1:exon:11277;Parent=Msa0288840-mRNA-1
chr2_3 five_prime_UTR 34859949 34860140 34859949 ID=Msa0288840-mRNA-1:five_prime_utr;Parent=Msa0288840-mRNA-1
chr2_3 five_prime_UTR 34860534 34860662 34860534 ID=Msa0288840-mRNA-1:five_prime_utr;Parent=Msa0288840-mRNA-1
chr2_3 CDS 34860663 34860933 34860663 ID=Msa0288840-mRNA-1:cds;Parent=Msa0288840-mRNA-1
chr2_3 CDS 34861982 34862061 34861982 ID=Msa0288840-mRNA-1:cds;Parent=Msa0288840-mRNA-1
chr2_3 three_prime_UTR 34862062 34862370 34862062 ID=Msa0288840-mRNA-1:three_prime_utr;Parent=Msa0288840-mRNA-1
Gene Sequence

>Msa0288840

ATGGCAACTAGACGTGTTCGTTACACCCCTCTTGCCACAGATGAGGATGATTACGTTGGTAATCAAACTAGACCATTTGACCCTCGATTTGATTACACACCAAGAGCCTTGGACAGAGTTCCCTGGAAATCTATTGCCCTTGCACTCTTCCTGTTGTTTCTTGGTACTGGACTTCTGTTTCTTTCGTACTTTATTTTCACTGGTCATATGGGGGGAGAACGCTCTCAAGCTTATGGCCTTCTAGCATTAGGATTTCTGAGCTTCCTCCCAGGATTTTATGAGACTCGACTTGCGTATTATGCCTGGAGAGGTGCCAAAGGTTATCGCTTTTCTGCCATCCCTGATTACTAG
Protein sequence

>Msa0288840

MATRRVRYTPLATDEDDYVGNQTRPFDPRFDYTPRALDRVPWKSIALALFLLFLGTGLLFLSYFIFTGHMGGERSQAYGLLALGFLSFLPGFYETRLAYYAWRGAKGYRFSAIPDY*