AlfalfaGEDB | Msa0289590

M. sativa cultivar zhongmu-4 / Msa0289590

KEGG: K19525
GO: -
PFAM: PF12624.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289590	XP_023912179.1	64.407	59	12	1	59	108	16	74	3.86e-13	70.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289590	A0A2P2MGU1	71.698	53	6	1	59	102	16	68	1.83e-13	73.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0265980	Msa0289590	-0.803637	3.170092e-49	-8.615850e-47
Msa0289590	Msa0327310	0.844717	6.360204e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289590	MtrunA17_Chr5g0400061	73.585	53	5	1	59	102	16	68	1.85e-16	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289590	AT4G17140.1	71.698	53	6	1	59	102	16	68	5.23e-16	73.6
Msa0289590	AT4G17140.2	71.698	53	6	1	59	102	16	68	5.28e-16	73.6
Msa0289590	AT4G17140.3	71.698	53	6	1	59	102	16	68	5.38e-16	73.6

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Find 114 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCAGTGAAGGTAA+AGG	0.520244	2_3:-35817725	Msa0289590:CDS
AAACCTGCCTTTACCTTCAC+TGG	0.460466	2_3:+35817718	None:intergenic
AAACTCCCTTGATCTCGTAC+AGG	0.570305	2_3:+35815167	None:intergenic
AAAGGCTGGGGAGTATCTTC+TGG	0.335547	2_3:-35815239	Msa0289590:three_prime_UTR
AAATGGATGAACTTTGTTTC+TGG	0.223376	2_3:-35818358	Msa0289590:CDS
AAATGGTGTCTTGGCATTAA+AGG	0.268839	2_3:-35815257	Msa0289590:three_prime_UTR
AACCGGAGGAAACTGAACAG+TGG	0.730525	2_3:+35820506	None:intergenic
AAGCAAGTGACTTAAAGAAC+AGG	0.507803	2_3:+35816530	None:intergenic
AAGGCTGGGGAGTATCTTCT+GGG	0.495935	2_3:-35815238	Msa0289590:three_prime_UTR
AATGACATTGGAACCCAAAA+TGG	0.366644	2_3:-35815274	Msa0289590:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACATCACTACAACAAAA+AGG	+	chr2_3:35815267-35815286	None:intergenic	30.0%
AATCAGCCATTTAATCAAAG+AGG	+	chr2_3:35815341-35815360	None:intergenic	30.0%
CATTGATGCTATAGCAAAAA+AGG	+	chr2_3:35815965-35815984	None:intergenic	30.0%
ATCAGTGTTGTATTACAAAG+TGG	-	chr2_3:35816254-35816273	Msa0289590:intron	30.0%
AAAGGTTAGGGAAATTATGT+TGG	-	chr2_3:35816453-35816472	Msa0289590:three_prime_UTR	30.0%
TATGTTAAGCATTTACCTGT+TGG	+	chr2_3:35816750-35816769	None:intergenic	30.0%
TTTGATGTGTTCAACTCAAA+AGG	-	chr2_3:35817515-35817534	Msa0289590:three_prime_UTR	30.0%
AGAACACATATAATTGTGTC+TGG	-	chr2_3:35817563-35817582	Msa0289590:three_prime_UTR	30.0%
TGAGAGATTCAATGAGTTTA+TGG	-	chr2_3:35817696-35817715	Msa0289590:CDS	30.0%
GGTAAGAACAGTAGTTAATA+TGG	+	chr2_3:35817940-35817959	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	35815079	35820542	35815079	ID=Msa0289590;Name=Msa0289590
chr2_3	mRNA	35815079	35820542	35815079	ID=Msa0289590-mRNA-1;Parent=Msa0289590;Name=Msa0289590-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.75\|0.8\|1\|0.5\|0.4\|5\|1623\|132
chr2_3	exon	35815079	35815344	35815079	ID=Msa0289590-mRNA-1:exon:11757;Parent=Msa0289590-mRNA-1
chr2_3	exon	35816078	35816128	35816078	ID=Msa0289590-mRNA-1:exon:11756;Parent=Msa0289590-mRNA-1
chr2_3	exon	35816294	35817799	35816294	ID=Msa0289590-mRNA-1:exon:11755;Parent=Msa0289590-mRNA-1
chr2_3	exon	35818347	35818445	35818347	ID=Msa0289590-mRNA-1:exon:11754;Parent=Msa0289590-mRNA-1
chr2_3	exon	35820443	35820542	35820443	ID=Msa0289590-mRNA-1:exon:11753;Parent=Msa0289590-mRNA-1
chr2_3	CDS	35820443	35820542	35820443	ID=Msa0289590-mRNA-1:cds;Parent=Msa0289590-mRNA-1
chr2_3	CDS	35818347	35818445	35818347	ID=Msa0289590-mRNA-1:cds;Parent=Msa0289590-mRNA-1
chr2_3	CDS	35817600	35817799	35817600	ID=Msa0289590-mRNA-1:cds;Parent=Msa0289590-mRNA-1
chr2_3	three_prime_UTR	35816294	35817599	35816294	ID=Msa0289590-mRNA-1:three_prime_utr;Parent=Msa0289590-mRNA-1
chr2_3	three_prime_UTR	35816078	35816128	35816078	ID=Msa0289590-mRNA-1:three_prime_utr;Parent=Msa0289590-mRNA-1
chr2_3	three_prime_UTR	35815079	35815344	35815079	ID=Msa0289590-mRNA-1:three_prime_utr;Parent=Msa0289590-mRNA-1

Gene Sequence

>Msa0289590

TATGAGATTGCTTCCCACTGTTCAGTTTCCTCCGGTTCCATTCAATATCGGCATTCTCAGCATCCTGTGCGGCTCGGTTCCTCGTCGTCGTTGTTCCAAGATTGCTTCTCAGATATGCATATTCTGGATTTGAATGCTACAAAACCGTTGAGAGAAACAAGGTTGAAATGGATGAACTTTGTTTCTGGTATCAATACTGGTGATGTAAAGTTGAAGAATATGCAGTTGAAACCGGAGGCTCTAAATGCTTTAAAATTGCCAGTGAAGGTAAAGGCAGGTTTTCTTGGATCCGTTAAACTTAAGGTTGGTGGGGCCCATATTAACTACTGTTCTTACCCTCTAAAACAATTTCTGTCTACCAAAGTTGTTCGTAAGCTTCATTCTCCTATGATTTCTTAG

Protein sequence

>Msa0289590

YEIASHCSVSSGSIQYRHSQHPVRLGSSSSLFQDCFSDMHILDLNATKPLRETRLKWMNFVSGINTGDVKLKNMQLKPEALNALKLPVKVKAGFLGSVKLKVGGAHINYCSYPLKQFLSTKVVRKLHSPMIS*