Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0293890 | XP_003596281.1 | 84.472 | 322 | 36 | 4 | 1 | 321 | 1 | 309 | 0.0 | 518 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0293890 | G7IR11 | 84.472 | 322 | 36 | 4 | 1 | 321 | 1 | 309 | 0.0 | 518 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0293890 | Msa0681270 | 0.802996 | 4.303137e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0293890 | MtrunA17_Chr2g0315231 | 84.472 | 322 | 36 | 4 | 1 | 321 | 1 | 309 | 0.0 | 518 |
Msa0293890 | MtrunA17_Chr2g0315221 | 58.075 | 322 | 75 | 6 | 1 | 319 | 1 | 265 | 4.37e-115 | 334 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0293890 | AT1G53460.1 | 39.634 | 328 | 168 | 11 | 1 | 319 | 1 | 307 | 1.30e-53 | 178 |
Find 76 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTCCAAATCCAATTTAT+TGG | 0.151825 | 2_3:+45430534 | None:intergenic |
TCTGAGTGTGAAATTGAATT+TGG | 0.162937 | 2_3:+45433513 | None:intergenic |
CATCTTTAAAATACCCATTT+TGG | 0.169188 | 2_3:+45433086 | None:intergenic |
GAAATGTGATACCAATAAAT+TGG | 0.198607 | 2_3:-45430545 | Msa0293890:CDS |
TGGACTTTGGTCATCTTTAT+AGG | 0.201052 | 2_3:-45430132 | Msa0293890:three_prime_UTR |
TTGTACCATTTATACCAAAA+TGG | 0.247649 | 2_3:-45433100 | Msa0293890:CDS |
TTCAATTCGTATTACTATAA+TGG | 0.265561 | 2_3:-45429904 | Msa0293890:three_prime_UTR |
CTGAGTGTGAAATTGAATTT+GGG | 0.277348 | 2_3:+45433514 | None:intergenic |
TTTGAGACTCCTTATGCTTT+GGG | 0.287556 | 2_3:-45433022 | Msa0293890:CDS |
TAGCTTGGTGAAATTAATTA+TGG | 0.288020 | 2_3:+45430294 | None:intergenic |
TGATACCAATAAATTGGATT+TGG | 0.294300 | 2_3:-45430539 | Msa0293890:CDS |
GTTTGAGACTCCTTATGCTT+TGG | 0.307272 | 2_3:-45433023 | Msa0293890:CDS |
GCAGTCTCACTCAGGTGATT+TGG | 0.313602 | 2_3:+45430398 | None:intergenic |
ACTTCCCGATGGTGAGAAAA+AGG | 0.341116 | 2_3:-45433221 | Msa0293890:CDS |
ATCATTCTGTTGCTGACTAT+TGG | 0.346553 | 2_3:-45429941 | Msa0293890:three_prime_UTR |
AGCAATTTCAAGATTGTCAT+TGG | 0.356017 | 2_3:+45432970 | None:intergenic |
ATTTCAAAAGGTAGATCTTC+CGG | 0.364900 | 2_3:+45430183 | None:intergenic |
TGGATTCGCAGATGGCTATC+AGG | 0.366496 | 2_3:-45430821 | Msa0293890:intron |
GCAGCCATGGAAATGGAAAA+TGG | 0.370599 | 2_3:+45433592 | None:intergenic |
GAGAGAACCATTTGTTGTTA+AGG | 0.377906 | 2_3:-45433149 | Msa0293890:CDS |
CGCGGTATAAGACGCAATTT+CGG | 0.380142 | 2_3:+45433655 | None:intergenic |
AATTTGTGAATCAAGATGTT+TGG | 0.383821 | 2_3:-45430567 | Msa0293890:CDS |
GGGTTGGGGTGAGGATGAAA+TGG | 0.384547 | 2_3:+45433489 | None:intergenic |
AGAAAAGCAATCTCTCAAAA+TGG | 0.384828 | 2_3:+45430260 | None:intergenic |
TGTACCATTTATACCAAAAT+GGG | 0.402765 | 2_3:-45433099 | Msa0293890:CDS |
GAAAGCTCCTTAACAACAAA+TGG | 0.408110 | 2_3:+45433142 | None:intergenic |
TAAGGAGCTTTCAATTGAAA+TGG | 0.411081 | 2_3:-45433131 | Msa0293890:CDS |
CTTTGGTCATCTTTATAGGC+TGG | 0.411569 | 2_3:-45430128 | Msa0293890:three_prime_UTR |
GAGAAAAGCAGCCATGGAAA+TGG | 0.420366 | 2_3:+45433585 | None:intergenic |
TCTGAGTTGAGCATCATCAT+TGG | 0.436427 | 2_3:+45430216 | None:intergenic |
TATTTCACACTGCAGCTGAT+TGG | 0.439570 | 2_3:+45429977 | None:intergenic |
TTGGTTGCCCCTCTGTCAGC+AGG | 0.446489 | 2_3:-45430772 | Msa0293890:CDS |
ACACTTGGTGCATCCTCAGC+TGG | 0.449633 | 2_3:-45430482 | Msa0293890:CDS |
TCAAATTATGATCATAGAAA+AGG | 0.451957 | 2_3:-45430025 | Msa0293890:three_prime_UTR |
TGGCTTGATTGTTTCTTCAC+AGG | 0.455095 | 2_3:-45430108 | Msa0293890:three_prime_UTR |
TTGAAGCAAGTGGCAGTGTT+TGG | 0.459813 | 2_3:-45430791 | Msa0293890:CDS |
ATGCAAGATTTAACATTGGT+TGG | 0.460291 | 2_3:-45433045 | Msa0293890:CDS |
ACTGATACAGTTATCTTATG+AGG | 0.464368 | 2_3:-45430328 | Msa0293890:three_prime_UTR |
GGATTTGGAGATAACTATGA+AGG | 0.483262 | 2_3:-45430524 | Msa0293890:CDS |
CAACTCAGAATAAATTTGTC+CGG | 0.484380 | 2_3:-45430202 | Msa0293890:three_prime_UTR |
TTAACATAACCCAAAGCATA+AGG | 0.485174 | 2_3:+45433013 | None:intergenic |
AATGGTTCATACGTACTAGT+AGG | 0.499799 | 2_3:-45429886 | Msa0293890:three_prime_UTR |
CAGCTCGATGTCGCCGACAC+CGG | 0.516997 | 2_3:+45433369 | None:intergenic |
GAGAAAAGATGGTAAGAGAA+AGG | 0.519172 | 2_3:-45433194 | Msa0293890:CDS |
GAGGAGAGTGATAGTGTGCT+AGG | 0.519235 | 2_3:+45433617 | None:intergenic |
ACTCACATCAGAATTTCAAA+AGG | 0.522540 | 2_3:+45430171 | None:intergenic |
GAGTGAAGAGTTGTAAGAAA+TGG | 0.527952 | 2_3:-45430152 | Msa0293890:three_prime_UTR |
GGTTGGGGTGAGGATGAAAT+GGG | 0.531706 | 2_3:+45433490 | None:intergenic |
TTGGTGAAATTAATTATGGC+CGG | 0.532535 | 2_3:+45430298 | None:intergenic |
TCTCATTTAACTGCTGAAAG+AGG | 0.532635 | 2_3:-45430055 | Msa0293890:three_prime_UTR |
ATGGTTTGCAAAGAATAGCT+TGG | 0.536661 | 2_3:+45430279 | None:intergenic |
TATTTCATATGCTTTACACT+TGG | 0.545051 | 2_3:-45430497 | Msa0293890:CDS |
GAGTTGTAAGAAATGGACTT+TGG | 0.560837 | 2_3:-45430145 | Msa0293890:three_prime_UTR |
ATCGACGAAGACGAAGAATC+CGG | 0.563125 | 2_3:-45433388 | Msa0293890:CDS |
TTCGTCTTCGTCGATTGTTG+TGG | 0.566838 | 2_3:+45433396 | None:intergenic |
TCTTCCCTGCGAAAAGACTA+CGG | 0.575304 | 2_3:-45430742 | Msa0293890:CDS |
GTTCATGCAAGATTTAACAT+TGG | 0.578282 | 2_3:-45433049 | Msa0293890:CDS |
AACTAGAAGCAGTCTCACTC+AGG | 0.578505 | 2_3:+45430390 | None:intergenic |
ATGGAAATGGAAAATGGAAG+AGG | 0.581578 | 2_3:+45433598 | None:intergenic |
ACATCATTCCTGCTGACAGA+GGG | 0.582524 | 2_3:+45430764 | None:intergenic |
GCATCATCATTGGAAAACTT+AGG | 0.585448 | 2_3:+45430226 | None:intergenic |
TATCTTATGAGGTTGATCTC+CGG | 0.592696 | 2_3:-45430317 | Msa0293890:three_prime_UTR |
AAAAGATGGTAAGAGAAAGG+TGG | 0.600442 | 2_3:-45433191 | Msa0293890:CDS |
TGAAACGGTGTCGTGTGAGA+AGG | 0.608320 | 2_3:+45433557 | None:intergenic |
TTATGATCATAGAAAAGGTG+TGG | 0.618574 | 2_3:-45430020 | Msa0293890:three_prime_UTR |
GACATCATTCCTGCTGACAG+AGG | 0.621331 | 2_3:+45430763 | None:intergenic |
ACAAATCAACCACTTCCCGA+TGG | 0.636675 | 2_3:-45433232 | Msa0293890:CDS |
AGGAAGTGCATTGAAGCAAG+TGG | 0.637806 | 2_3:-45430801 | Msa0293890:CDS |
TCATCAGACACTACCAGCTG+AGG | 0.654887 | 2_3:+45430469 | None:intergenic |
TCGGAGAAGAGAGTGCTGAG+AGG | 0.682515 | 2_3:+45433436 | None:intergenic |
GAAGACGAAGAATCCGGTGT+CGG | 0.690479 | 2_3:-45433382 | Msa0293890:CDS |
TGAGTGTGAAATTGAATTTG+GGG | 0.690582 | 2_3:+45433515 | None:intergenic |
CATCATTCCTGCTGACAGAG+GGG | 0.711999 | 2_3:+45430765 | None:intergenic |
GAGTGTGAAATTGAATTTGG+GGG | 0.732549 | 2_3:+45433516 | None:intergenic |
ATAACTGTATCAGTTTCCCG+AGG | 0.737990 | 2_3:+45430337 | None:intergenic |
AGGTCTCGATCAGTGCAGCG+CGG | 0.790014 | 2_3:+45433637 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTGAATTATGATTCTTTT+GGG | - | chr2_3:45430597-45430616 | Msa0293890:CDS | 15.0% |
!! | CATTTGAAAAAAAAGTTATT+CGG | - | chr2_3:45430997-45431016 | Msa0293890:intron | 15.0% |
!! | ATTTGAAAAAAAAGTTATTC+GGG | - | chr2_3:45430998-45431017 | Msa0293890:intron | 15.0% |
!! | TTTAAGCAGAAAAAATCAAA+AGG | - | chr2_3:45430195-45430214 | Msa0293890:three_prime_UTR | 20.0% |
!! | TTAAGCAGAAAAAATCAAAA+GGG | - | chr2_3:45430196-45430215 | Msa0293890:three_prime_UTR | 20.0% |
!!! | TTTTCAATTTCAACTTTCTT+TGG | + | chr2_3:45430228-45430247 | None:intergenic | 20.0% |
!!! | CTTTTGAATTATGATTCTTT+TGG | - | chr2_3:45430596-45430615 | Msa0293890:CDS | 20.0% |
!!! | AGCTTGTAAGATTTTATTTT+GGG | - | chr2_3:45431048-45431067 | Msa0293890:intron | 20.0% |
!! | TCTACAATCTCAAAATTTAA+AGG | + | chr2_3:45431237-45431256 | None:intergenic | 20.0% |
!! | TAGATTCATATATGATGTAT+CGG | - | chr2_3:45431586-45431605 | Msa0293890:intron | 20.0% |
!!! | TTAGATTTCTATTAACTTGA+GGG | - | chr2_3:45431635-45431654 | Msa0293890:intron | 20.0% |
!! | AGAAACAAATAGATAAATAC+GGG | + | chr2_3:45431676-45431695 | None:intergenic | 20.0% |
!! | GAGAAACAAATAGATAAATA+CGG | + | chr2_3:45431677-45431696 | None:intergenic | 20.0% |
!!! | AATAACAAACTTTTCCAAAT+TGG | + | chr2_3:45431824-45431843 | None:intergenic | 20.0% |
!!! | TTTAACTTTCACATTTGTTT+TGG | - | chr2_3:45432010-45432029 | Msa0293890:intron | 20.0% |
!! | CTAGTTAGTATCATAAATAT+CGG | - | chr2_3:45432156-45432175 | Msa0293890:intron | 20.0% |
!! | AGCTTATTTATTATCTTGAA+CGG | + | chr2_3:45432560-45432579 | None:intergenic | 20.0% |
!! | TATGATCTTGTTAGATATTA+AGG | - | chr2_3:45432593-45432612 | Msa0293890:intron | 20.0% |
!! | TATTGCTTATAACATGAATT+TGG | - | chr2_3:45432661-45432680 | Msa0293890:intron | 20.0% |
!! | GAATTTAGAAAATATAGTGA+AGG | + | chr2_3:45432836-45432855 | None:intergenic | 20.0% |
!! | TCAAATTATGATCATAGAAA+AGG | - | chr2_3:45433477-45433496 | Msa0293890:CDS | 20.0% |
!! | TTCAATTCGTATTACTATAA+TGG | - | chr2_3:45433598-45433617 | Msa0293890:exon | 20.0% |
! | TAAGCAGAAAAAATCAAAAG+GGG | - | chr2_3:45430197-45430216 | Msa0293890:three_prime_UTR | 25.0% |
! | TTGTACCATTTATACCAAAA+TGG | - | chr2_3:45430402-45430421 | Msa0293890:exon | 25.0% |
! | TGTACCATTTATACCAAAAT+GGG | - | chr2_3:45430403-45430422 | Msa0293890:exon | 25.0% |
!!! | AATACCCATTTTGGTATAAA+TGG | + | chr2_3:45430410-45430429 | None:intergenic | 25.0% |
!!! | CATCTTTAAAATACCCATTT+TGG | + | chr2_3:45430419-45430438 | None:intergenic | 25.0% |
!! | TGTTTGATTTAGTGAGAATA+TGG | - | chr2_3:45430656-45430675 | Msa0293890:intron | 25.0% |
!! | TGAACTAGTCATAATTTTGA+TGG | - | chr2_3:45430693-45430712 | Msa0293890:intron | 25.0% |
! | AACAGAACACAACAAAAAAA+TGG | + | chr2_3:45430737-45430756 | None:intergenic | 25.0% |
! | TGTTGTATATAAACTACCAT+TGG | - | chr2_3:45430872-45430891 | Msa0293890:intron | 25.0% |
! | TTTAGTCACTATGAACAATA+GGG | + | chr2_3:45430974-45430993 | None:intergenic | 25.0% |
!!! | GAGCTTGTAAGATTTTATTT+TGG | - | chr2_3:45431047-45431066 | Msa0293890:intron | 25.0% |
! | GAAAAGATCAAAACAACTTA+TGG | + | chr2_3:45431179-45431198 | None:intergenic | 25.0% |
! | AAAGTATATCAAGTATTCAG+GGG | + | chr2_3:45431385-45431404 | None:intergenic | 25.0% |
! | CAAAGTATATCAAGTATTCA+GGG | + | chr2_3:45431386-45431405 | None:intergenic | 25.0% |
! | CTGAATACTTGATATACTTT+GGG | - | chr2_3:45431385-45431404 | Msa0293890:intron | 25.0% |
! | TGAATACTTGATATACTTTG+GGG | - | chr2_3:45431386-45431405 | Msa0293890:intron | 25.0% |
! | AGTCAGCTCAAATAATAATA+AGG | - | chr2_3:45431429-45431448 | Msa0293890:intron | 25.0% |
! | GTTAATAGAAATCTAACAGA+AGG | + | chr2_3:45431631-45431650 | None:intergenic | 25.0% |
!! | GTTAGATTTCTATTAACTTG+AGG | - | chr2_3:45431634-45431653 | Msa0293890:intron | 25.0% |
! | GAAACAAATAGATAAATACG+GGG | + | chr2_3:45431675-45431694 | None:intergenic | 25.0% |
! | GAAATTTAGGAAAAAAGTCA+TGG | + | chr2_3:45431924-45431943 | None:intergenic | 25.0% |
!! | ACATTTTTCACAATATCATG+AGG | - | chr2_3:45432226-45432245 | Msa0293890:intron | 25.0% |
!! | GTAAATTTAAGTTTGTTTGC+AGG | + | chr2_3:45432282-45432301 | None:intergenic | 25.0% |
! | GCTAACTATCAAAAGTTAAA+AGG | + | chr2_3:45432304-45432323 | None:intergenic | 25.0% |
!!! | TATTAGTTTTAATCCAAGCT+TGG | + | chr2_3:45432483-45432502 | None:intergenic | 25.0% |
! | GCTTATTTATTATCTTGAAC+GGG | + | chr2_3:45432559-45432578 | None:intergenic | 25.0% |
! | AATTTGTGAATCAAGATGTT+TGG | - | chr2_3:45432935-45432954 | Msa0293890:intron | 25.0% |
! | GAAATGTGATACCAATAAAT+TGG | - | chr2_3:45432957-45432976 | Msa0293890:intron | 25.0% |
! | TGATACCAATAAATTGGATT+TGG | - | chr2_3:45432963-45432982 | Msa0293890:intron | 25.0% |
! | TATCTCCAAATCCAATTTAT+TGG | + | chr2_3:45432971-45432990 | None:intergenic | 25.0% |
! | TATTTCATATGCTTTACACT+TGG | - | chr2_3:45433005-45433024 | Msa0293890:CDS | 25.0% |
!! | TAGCTTGGTGAAATTAATTA+TGG | + | chr2_3:45433211-45433230 | None:intergenic | 25.0% |
!!! | TTAGGGTTTTGGAAATGAAA+CGG | + | chr2_3:45429963-45429982 | None:intergenic | 30.0% |
ATTGAATTTGGGGGAAATTA+GGG | + | chr2_3:45429980-45429999 | None:intergenic | 30.0% | |
AATTGAATTTGGGGGAAATT+AGG | + | chr2_3:45429981-45430000 | None:intergenic | 30.0% | |
TGAGTGTGAAATTGAATTTG+GGG | + | chr2_3:45429990-45430009 | None:intergenic | 30.0% | |
CTGAGTGTGAAATTGAATTT+GGG | + | chr2_3:45429991-45430010 | None:intergenic | 30.0% | |
TCTGAGTGTGAAATTGAATT+TGG | + | chr2_3:45429992-45430011 | None:intergenic | 30.0% | |
! | TTGTTGGGTTTGAGAATTTT+CGG | + | chr2_3:45430037-45430056 | None:intergenic | 30.0% |
AAAAAGGTTGTGAGAAAAGA+TGG | - | chr2_3:45430297-45430316 | Msa0293890:three_prime_UTR | 30.0% | |
TAAGGAGCTTTCAATTGAAA+TGG | - | chr2_3:45430371-45430390 | Msa0293890:three_prime_UTR | 30.0% | |
GTTCATGCAAGATTTAACAT+TGG | - | chr2_3:45430453-45430472 | Msa0293890:CDS | 30.0% | |
ATGCAAGATTTAACATTGGT+TGG | - | chr2_3:45430457-45430476 | Msa0293890:CDS | 30.0% | |
TTAACATAACCCAAAGCATA+AGG | + | chr2_3:45430492-45430511 | None:intergenic | 30.0% | |
AGCAATTTCAAGATTGTCAT+TGG | + | chr2_3:45430535-45430554 | None:intergenic | 30.0% | |
CTTTAGTCACTATGAACAAT+AGG | + | chr2_3:45430975-45430994 | None:intergenic | 30.0% | |
TTACAAGCTCTTTCAAACAA+TGG | + | chr2_3:45431037-45431056 | None:intergenic | 30.0% | |
CTAATAGAATGAGCTACATT+TGG | + | chr2_3:45431115-45431134 | None:intergenic | 30.0% | |
CTAGCTTATGAAAGTTTACT+TGG | - | chr2_3:45431203-45431222 | Msa0293890:intron | 30.0% | |
AAGTATATCAAGTATTCAGG+GGG | + | chr2_3:45431384-45431403 | None:intergenic | 30.0% | |
CCAAAGTATATCAAGTATTC+AGG | + | chr2_3:45431387-45431406 | None:intergenic | 30.0% | |
CCTGAATACTTGATATACTT+TGG | - | chr2_3:45431384-45431403 | Msa0293890:intron | 30.0% | |
ATTCCCGAAGAAGAAAAAAT+TGG | - | chr2_3:45431521-45431540 | Msa0293890:intron | 30.0% | |
TTCCCGAAGAAGAAAAAATT+GGG | - | chr2_3:45431522-45431541 | Msa0293890:intron | 30.0% | |
TAACAGAAGGCTCAATTATA+TGG | + | chr2_3:45431618-45431637 | None:intergenic | 30.0% | |
AGTTTCACATGCTGAAATTT+AGG | + | chr2_3:45431937-45431956 | None:intergenic | 30.0% | |
AAATTTCAGCATGTGAAACT+AGG | - | chr2_3:45431937-45431956 | Msa0293890:intron | 30.0% | |
!!! | ACTTTCACATTTGTTTTGGA+AGG | - | chr2_3:45432014-45432033 | Msa0293890:intron | 30.0% |
!!! | ACATTTGTTTTGGAAGGTTA+GGG | - | chr2_3:45432020-45432039 | Msa0293890:intron | 30.0% |
ATTTGGTATCTAAGAGTTAG+AGG | + | chr2_3:45432103-45432122 | None:intergenic | 30.0% | |
! | TTTTCACAATATCATGAGGT+AGG | - | chr2_3:45432230-45432249 | Msa0293890:intron | 30.0% |
GCATAAATGTATACATACAG+TGG | - | chr2_3:45432364-45432383 | Msa0293890:intron | 30.0% | |
GATTAAAACTAATATTGCCC+AGG | - | chr2_3:45432489-45432508 | Msa0293890:intron | 30.0% | |
!!! | AAGACTACGGAAATTTTTTG+AGG | - | chr2_3:45432773-45432792 | Msa0293890:intron | 30.0% |
ACTGATACAGTTATCTTATG+AGG | - | chr2_3:45433174-45433193 | Msa0293890:CDS | 30.0% | |
TTGGTGAAATTAATTATGGC+CGG | + | chr2_3:45433207-45433226 | None:intergenic | 30.0% | |
AGAAAAGCAATCTCTCAAAA+TGG | + | chr2_3:45433245-45433264 | None:intergenic | 30.0% | |
CAACTCAGAATAAATTTGTC+CGG | - | chr2_3:45433300-45433319 | Msa0293890:CDS | 30.0% | |
ATTTCAAAAGGTAGATCTTC+CGG | + | chr2_3:45433322-45433341 | None:intergenic | 30.0% | |
ACTCACATCAGAATTTCAAA+AGG | + | chr2_3:45433334-45433353 | None:intergenic | 30.0% | |
TTATGATCATAGAAAAGGTG+TGG | - | chr2_3:45433482-45433501 | Msa0293890:CDS | 30.0% | |
ATGGAAATGGAAAATGGAAG+AGG | + | chr2_3:45429907-45429926 | None:intergenic | 35.0% | |
! | TCTTCCATTTTCCATTTCCA+TGG | - | chr2_3:45429906-45429925 | Msa0293890:three_prime_UTR | 35.0% |
GAGTGTGAAATTGAATTTGG+GGG | + | chr2_3:45429989-45430008 | None:intergenic | 35.0% | |
! | TGTTGGGTTTGAGAATTTTC+GGG | + | chr2_3:45430036-45430055 | None:intergenic | 35.0% |
!!! | GAGAGGTTTTTTGGTTTGTT+GGG | + | chr2_3:45430052-45430071 | None:intergenic | 35.0% |
!!! | TGAGAGGTTTTTTGGTTTGT+TGG | + | chr2_3:45430053-45430072 | None:intergenic | 35.0% |
!! | GGTTTTGTCTGACATTAGTT+CGG | + | chr2_3:45430088-45430107 | None:intergenic | 35.0% |
GAGAAAAGATGGTAAGAGAA+AGG | - | chr2_3:45430308-45430327 | Msa0293890:three_prime_UTR | 35.0% | |
AAAAGATGGTAAGAGAAAGG+TGG | - | chr2_3:45430311-45430330 | Msa0293890:three_prime_UTR | 35.0% | |
!! | GAGAGAACCATTTGTTGTTA+AGG | - | chr2_3:45430353-45430372 | Msa0293890:three_prime_UTR | 35.0% |
GAAAGCTCCTTAACAACAAA+TGG | + | chr2_3:45430363-45430382 | None:intergenic | 35.0% | |
! | TTTGAGACTCCTTATGCTTT+GGG | - | chr2_3:45430480-45430499 | Msa0293890:CDS | 35.0% |
!! | ACGGTTTTGTCCTTTGTAAA+AGG | - | chr2_3:45430823-45430842 | Msa0293890:intron | 35.0% |
! | ATTGTTATTCCAAGTCCACA+AGG | - | chr2_3:45431454-45431473 | Msa0293890:intron | 35.0% |
GGTTGTGATGAGATAGTATT+TGG | - | chr2_3:45431475-45431494 | Msa0293890:intron | 35.0% | |
TGATGAGATAGTATTTGGCA+AGG | - | chr2_3:45431480-45431499 | Msa0293890:intron | 35.0% | |
GATGAGATAGTATTTGGCAA+GGG | - | chr2_3:45431481-45431500 | Msa0293890:intron | 35.0% | |
!!! | CACCCAATTTTTTCTTCTTC+GGG | + | chr2_3:45431527-45431546 | None:intergenic | 35.0% |
!!! | GCACCCAATTTTTTCTTCTT+CGG | + | chr2_3:45431528-45431547 | None:intergenic | 35.0% |
AAGAAGAAAAAATTGGGTGC+TGG | - | chr2_3:45431528-45431547 | Msa0293890:intron | 35.0% | |
ATAAATACGGGGTTGGATAA+AGG | + | chr2_3:45431664-45431683 | None:intergenic | 35.0% | |
CAAATAGATAAATACGGGGT+TGG | + | chr2_3:45431671-45431690 | None:intergenic | 35.0% | |
ACGGCAATGACAATTATGTT+AGG | + | chr2_3:45431866-45431885 | None:intergenic | 35.0% | |
!!! | CACATTTGTTTTGGAAGGTT+AGG | - | chr2_3:45432019-45432038 | Msa0293890:intron | 35.0% |
!!! | CATTTGTTTTGGAAGGTTAG+GGG | - | chr2_3:45432021-45432040 | Msa0293890:intron | 35.0% |
CACTCTCATGCTAAATGATT+CGG | + | chr2_3:45432517-45432536 | None:intergenic | 35.0% | |
GATATTAAGGATCTTCTTCG+AGG | - | chr2_3:45432606-45432625 | Msa0293890:intron | 35.0% | |
AGTTCATTTCCCATACATGT+TGG | - | chr2_3:45432635-45432654 | Msa0293890:intron | 35.0% | |
GCAATACATCCAACATGTAT+GGG | + | chr2_3:45432647-45432666 | None:intergenic | 35.0% | |
AGCAATACATCCAACATGTA+TGG | + | chr2_3:45432648-45432667 | None:intergenic | 35.0% | |
AGGTTCCAGAAAATACAGTA+AGG | - | chr2_3:45432793-45432812 | Msa0293890:intron | 35.0% | |
! | GTATGCCTTACTGTATTTTC+TGG | + | chr2_3:45432801-45432820 | None:intergenic | 35.0% |
! | TTACGATTTCTTTTTCCTCC+AGG | - | chr2_3:45432879-45432898 | Msa0293890:intron | 35.0% |
GGATTTGGAGATAACTATGA+AGG | - | chr2_3:45432978-45432997 | Msa0293890:CDS | 35.0% | |
! | TATCTTATGAGGTTGATCTC+CGG | - | chr2_3:45433185-45433204 | Msa0293890:CDS | 35.0% |
! | ATGGTTTGCAAAGAATAGCT+TGG | + | chr2_3:45433226-45433245 | None:intergenic | 35.0% |
GCATCATCATTGGAAAACTT+AGG | + | chr2_3:45433279-45433298 | None:intergenic | 35.0% | |
GAGTGAAGAGTTGTAAGAAA+TGG | - | chr2_3:45433350-45433369 | Msa0293890:CDS | 35.0% | |
! | GAGTTGTAAGAAATGGACTT+TGG | - | chr2_3:45433357-45433376 | Msa0293890:CDS | 35.0% |
TGGACTTTGGTCATCTTTAT+AGG | - | chr2_3:45433370-45433389 | Msa0293890:CDS | 35.0% | |
TCTCATTTAACTGCTGAAAG+AGG | - | chr2_3:45433447-45433466 | Msa0293890:CDS | 35.0% | |
! | ATCATTCTGTTGCTGACTAT+TGG | - | chr2_3:45433561-45433580 | Msa0293890:CDS | 35.0% |
AATGGTTCATACGTACTAGT+AGG | - | chr2_3:45433616-45433635 | Msa0293890:five_prime_UTR | 35.0% | |
!! | GTTTTTGAGAAAAGCAGCCA+TGG | + | chr2_3:45429926-45429945 | None:intergenic | 40.0% |
! | TTTGGGGGAAATTAGGGTTT+TGG | + | chr2_3:45429974-45429993 | None:intergenic | 40.0% |
!!! | GTTTGAGAATTTTCGGGTTG+GGG | + | chr2_3:45430030-45430049 | None:intergenic | 40.0% |
!!! | GGTTTGAGAATTTTCGGGTT+GGG | + | chr2_3:45430031-45430050 | None:intergenic | 40.0% |
! | ACAACCTTTTTCTCACCATC+GGG | + | chr2_3:45430288-45430307 | None:intergenic | 40.0% |
! | CACAACCTTTTTCTCACCAT+CGG | + | chr2_3:45430289-45430308 | None:intergenic | 40.0% |
! | GTTTGAGACTCCTTATGCTT+TGG | - | chr2_3:45430479-45430498 | Msa0293890:CDS | 40.0% |
AAGCGGACAATACCTCAAAA+CGG | + | chr2_3:45430782-45430801 | None:intergenic | 40.0% | |
!!! | TTTTGAGGTATTGTCCGCTT+TGG | - | chr2_3:45430782-45430801 | Msa0293890:CDS | 40.0% |
!! | TTTGAGGTATTGTCCGCTTT+GGG | - | chr2_3:45430783-45430802 | Msa0293890:CDS | 40.0% |
TACAAAGGACAAAACCGTGA+AGG | + | chr2_3:45430821-45430840 | None:intergenic | 40.0% | |
!! | CAACAAGGTGCCTTTTACAA+AGG | + | chr2_3:45430836-45430855 | None:intergenic | 40.0% |
!! | CTTTGTAAAAGGCACCTTGT+TGG | - | chr2_3:45430834-45430853 | Msa0293890:intron | 40.0% |
CCTCGATTCTCAAGAAATGT+GGG | - | chr2_3:45430895-45430914 | Msa0293890:intron | 40.0% | |
CTCAAGAAATGTGGGTCTTA+AGG | - | chr2_3:45430903-45430922 | Msa0293890:intron | 40.0% | |
ATGTGGGTCTTAAGGTGTAT+CGG | - | chr2_3:45430911-45430930 | Msa0293890:intron | 40.0% | |
ACTATGAACAATAGGGTGAC+TGG | + | chr2_3:45430967-45430986 | None:intergenic | 40.0% | |
GTCAAAACCTGTAGTTTGAG+TGG | - | chr2_3:45431082-45431101 | Msa0293890:intron | 40.0% | |
GTATACAAATGCCCCCTAAA+TGG | - | chr2_3:45431317-45431336 | Msa0293890:intron | 40.0% | |
CTGGGGTGAATCTAAACTTT+GGG | - | chr2_3:45431351-45431370 | Msa0293890:intron | 40.0% | |
TGGGGTGAATCTAAACTTTG+GGG | - | chr2_3:45431352-45431371 | Msa0293890:intron | 40.0% | |
ACTATCTCATCACAACCTTG+TGG | + | chr2_3:45431472-45431491 | None:intergenic | 40.0% | |
AGTATTTGGCAAGGGTTCAT+AGG | - | chr2_3:45431489-45431508 | Msa0293890:intron | 40.0% | |
GCATGACTAATATTCTACCC+CGG | - | chr2_3:45431778-45431797 | Msa0293890:intron | 40.0% | |
! | TGTTATTTGGGCGACCAATT+TGG | - | chr2_3:45431807-45431826 | Msa0293890:intron | 40.0% |
AGGAACACCAATAGTGTAAC+TGG | - | chr2_3:45431957-45431976 | Msa0293890:intron | 40.0% | |
AGCAAGTCCAGTTACACTAT+TGG | + | chr2_3:45431967-45431986 | None:intergenic | 40.0% | |
GCACTTAGTAACAACCAAAG+TGG | - | chr2_3:45432322-45432341 | Msa0293890:intron | 40.0% | |
CATGAATTTGGATTCGCAGA+TGG | - | chr2_3:45432673-45432692 | Msa0293890:intron | 40.0% | |
! | ATTTCCGTAGTCTTTTCGCA+GGG | + | chr2_3:45432767-45432786 | None:intergenic | 40.0% |
! | AATTTCCGTAGTCTTTTCGC+AGG | + | chr2_3:45432768-45432787 | None:intergenic | 40.0% |
! | AACATTTTCTCGCGTATCCT+CGG | - | chr2_3:45433148-45433167 | Msa0293890:CDS | 40.0% |
ATAACTGTATCAGTTTCCCG+AGG | + | chr2_3:45433168-45433187 | None:intergenic | 40.0% | |
! | TCTGAGTTGAGCATCATCAT+TGG | + | chr2_3:45433289-45433308 | None:intergenic | 40.0% |
CTTTGGTCATCTTTATAGGC+TGG | - | chr2_3:45433374-45433393 | Msa0293890:CDS | 40.0% | |
! | TGGCTTGATTGTTTCTTCAC+AGG | - | chr2_3:45433394-45433413 | Msa0293890:CDS | 40.0% |
TATTTCACACTGCAGCTGAT+TGG | + | chr2_3:45433528-45433547 | None:intergenic | 40.0% | |
CGCGGTATAAGACGCAATTT+CGG | + | chr2_3:45429850-45429869 | None:intergenic | 45.0% | |
GCAGCCATGGAAATGGAAAA+TGG | + | chr2_3:45429913-45429932 | None:intergenic | 45.0% | |
GAGAAAAGCAGCCATGGAAA+TGG | + | chr2_3:45429920-45429939 | None:intergenic | 45.0% | |
!!! | GGGTTTGAGAATTTTCGGGT+TGG | + | chr2_3:45430032-45430051 | None:intergenic | 45.0% |
!!! | GAGAGTGCTGAGAGGTTTTT+TGG | + | chr2_3:45430061-45430080 | None:intergenic | 45.0% |
! | TTCGTCTTCGTCGATTGTTG+TGG | + | chr2_3:45430109-45430128 | None:intergenic | 45.0% |
ATCGACGAAGACGAAGAATC+CGG | - | chr2_3:45430114-45430133 | Msa0293890:three_prime_UTR | 45.0% | |
ACAAATCAACCACTTCCCGA+TGG | - | chr2_3:45430270-45430289 | Msa0293890:three_prime_UTR | 45.0% | |
! | TTTTTCTCACCATCGGGAAG+TGG | + | chr2_3:45430282-45430301 | None:intergenic | 45.0% |
ACTTCCCGATGGTGAGAAAA+AGG | - | chr2_3:45430281-45430300 | Msa0293890:three_prime_UTR | 45.0% | |
AGCGGACAATACCTCAAAAC+GGG | + | chr2_3:45430781-45430800 | None:intergenic | 45.0% | |
!! | AAAGGCACCTTGTTGGATTC+AGG | - | chr2_3:45430841-45430860 | Msa0293890:intron | 45.0% |
ACCTTGTTGGATTCAGGAGT+CGG | - | chr2_3:45430847-45430866 | Msa0293890:intron | 45.0% | |
TTCTTGAGAATCGAGGCCAA+TGG | + | chr2_3:45430891-45430910 | None:intergenic | 45.0% | |
GCCTCGATTCTCAAGAAATG+TGG | - | chr2_3:45430894-45430913 | Msa0293890:intron | 45.0% | |
CCCACATTTCTTGAGAATCG+AGG | + | chr2_3:45430898-45430917 | None:intergenic | 45.0% | |
AACCTGTAGTTTGAGTGGTC+AGG | - | chr2_3:45431087-45431106 | Msa0293890:intron | 45.0% | |
! | AGCGTGGTAGTGTCCATTTA+GGG | + | chr2_3:45431333-45431352 | None:intergenic | 45.0% |
TAAATGGACACTACCACGCT+GGG | - | chr2_3:45431333-45431352 | Msa0293890:intron | 45.0% | |
GCTGGGGTGAATCTAAACTT+TGG | - | chr2_3:45431350-45431369 | Msa0293890:intron | 45.0% | |
TCATCACAACCTTGTGGACT+TGG | + | chr2_3:45431466-45431485 | None:intergenic | 45.0% | |
CGTTGGCAGGAAGAGTAAAA+CGG | + | chr2_3:45431885-45431904 | None:intergenic | 45.0% | |
AATGACACTAACACGTTGGC+AGG | + | chr2_3:45431898-45431917 | None:intergenic | 45.0% | |
GCACAATGACACTAACACGT+TGG | + | chr2_3:45431902-45431921 | None:intergenic | 45.0% | |
!!! | GTTTTGGAAGGTTAGGGGTA+CGG | - | chr2_3:45432026-45432045 | Msa0293890:intron | 45.0% |
!! | TTTTGGAAGGTTAGGGGTAC+GGG | - | chr2_3:45432027-45432046 | Msa0293890:intron | 45.0% |
TATGCATGCAAACGCCACTT+TGG | + | chr2_3:45432339-45432358 | None:intergenic | 45.0% | |
! | CGTCTCTTTTCATCCAAGCT+TGG | - | chr2_3:45432467-45432486 | Msa0293890:intron | 45.0% |
!! | TGCTAAATGATTCGGTGCCT+GGG | + | chr2_3:45432509-45432528 | None:intergenic | 45.0% |
!! | ATGCTAAATGATTCGGTGCC+TGG | + | chr2_3:45432510-45432529 | None:intergenic | 45.0% |
! | AGGAAGTGCATTGAAGCAAG+TGG | - | chr2_3:45432701-45432720 | Msa0293890:intron | 45.0% |
TTGAAGCAAGTGGCAGTGTT+TGG | - | chr2_3:45432711-45432730 | Msa0293890:intron | 45.0% | |
ACATCATTCCTGCTGACAGA+GGG | + | chr2_3:45432741-45432760 | None:intergenic | 45.0% | |
TCTTCCCTGCGAAAAGACTA+CGG | - | chr2_3:45432760-45432779 | Msa0293890:intron | 45.0% | |
TGCATTTACTGCAAACCTGG+AGG | + | chr2_3:45432897-45432916 | None:intergenic | 45.0% | |
GCATGCATTTACTGCAAACC+TGG | + | chr2_3:45432900-45432919 | None:intergenic | 45.0% | |
AACTAGAAGCAGTCTCACTC+AGG | + | chr2_3:45433115-45433134 | None:intergenic | 45.0% | |
! | ACATTTTCTCGCGTATCCTC+GGG | - | chr2_3:45433149-45433168 | Msa0293890:CDS | 45.0% |
!!! | AAACATAATTTTTTATTATT+TGG | + | chr2_3:45432120-45432139 | None:intergenic | 5.0% |
! | GAGGAGAGTGATAGTGTGCT+AGG | + | chr2_3:45429888-45429907 | None:intergenic | 50.0% |
!! | TGAAACGGTGTCGTGTGAGA+AGG | + | chr2_3:45429948-45429967 | None:intergenic | 50.0% |
GGTTGGGGTGAGGATGAAAT+GGG | + | chr2_3:45430015-45430034 | None:intergenic | 50.0% | |
!!! | AGAATTTTCGGGTTGGGGTG+AGG | + | chr2_3:45430025-45430044 | None:intergenic | 50.0% |
GAAGACGAAGAATCCGGTGT+CGG | - | chr2_3:45430120-45430139 | Msa0293890:three_prime_UTR | 50.0% | |
GCGGACAATACCTCAAAACG+GGG | + | chr2_3:45430780-45430799 | None:intergenic | 50.0% | |
CCTTGTTGGATTCAGGAGTC+GGG | - | chr2_3:45430848-45430867 | Msa0293890:intron | 50.0% | |
CTTGTTGGATTCAGGAGTCG+GGG | - | chr2_3:45430849-45430868 | Msa0293890:intron | 50.0% | |
TGCCTGACCACTCAAACTAC+AGG | + | chr2_3:45431092-45431111 | None:intergenic | 50.0% | |
! | CGTGGTAGTGTCCATTTAGG+GGG | + | chr2_3:45431331-45431350 | None:intergenic | 50.0% |
! | GCGTGGTAGTGTCCATTTAG+GGG | + | chr2_3:45431332-45431351 | None:intergenic | 50.0% |
! | CAGCGTGGTAGTGTCCATTT+AGG | + | chr2_3:45431334-45431353 | None:intergenic | 50.0% |
CTAAATGGACACTACCACGC+TGG | - | chr2_3:45431332-45431351 | Msa0293890:intron | 50.0% | |
AAATGGACACTACCACGCTG+GGG | - | chr2_3:45431334-45431353 | Msa0293890:intron | 50.0% | |
AGTTTAGATTCACCCCAGCG+TGG | + | chr2_3:45431349-45431368 | None:intergenic | 50.0% | |
!! | ACCCCGGTGTGCTTGTTATT+TGG | - | chr2_3:45431794-45431813 | Msa0293890:intron | 50.0% |
CCCAAATAACAAGCACACCG+GGG | + | chr2_3:45431798-45431817 | None:intergenic | 50.0% | |
!! | CCCCGGTGTGCTTGTTATTT+GGG | - | chr2_3:45431795-45431814 | Msa0293890:intron | 50.0% |
GCCCAAATAACAAGCACACC+GGG | + | chr2_3:45431799-45431818 | None:intergenic | 50.0% | |
CGCCCAAATAACAAGCACAC+CGG | + | chr2_3:45431800-45431819 | None:intergenic | 50.0% | |
TGGATTCGCAGATGGCTATC+AGG | - | chr2_3:45432681-45432700 | Msa0293890:intron | 50.0% | |
CATCATTCCTGCTGACAGAG+GGG | + | chr2_3:45432740-45432759 | None:intergenic | 50.0% | |
GACATCATTCCTGCTGACAG+AGG | + | chr2_3:45432742-45432761 | None:intergenic | 50.0% | |
TCATCAGACACTACCAGCTG+AGG | + | chr2_3:45433036-45433055 | None:intergenic | 50.0% | |
GCAGTCTCACTCAGGTGATT+TGG | + | chr2_3:45433107-45433126 | None:intergenic | 50.0% | |
GGGTTGGGGTGAGGATGAAA+TGG | + | chr2_3:45430016-45430035 | None:intergenic | 55.0% | |
!! | TCGGAGAAGAGAGTGCTGAG+AGG | + | chr2_3:45430069-45430088 | None:intergenic | 55.0% |
CAATACCTCAAAACGGGGCG+TGG | + | chr2_3:45430775-45430794 | None:intergenic | 55.0% | |
GCTCACACAACGACCCAAAG+CGG | + | chr2_3:45430799-45430818 | None:intergenic | 55.0% | |
GGTCGTTGTGTGAGCCTTCA+CGG | - | chr2_3:45430804-45430823 | Msa0293890:CDS | 55.0% | |
CCCGACTCCTGAATCCAACA+AGG | + | chr2_3:45430851-45430870 | None:intergenic | 55.0% | |
TTGAGCTGACTACTGCAGCG+TGG | + | chr2_3:45431420-45431439 | None:intergenic | 55.0% | |
! | TAGGGGTACGGGAGTCTAGA+AGG | - | chr2_3:45432038-45432057 | Msa0293890:intron | 55.0% |
GTACGGGAGTCTAGAAGGAC+TGG | - | chr2_3:45432043-45432062 | Msa0293890:intron | 55.0% | |
!! | ACACTTGGTGCATCCTCAGC+TGG | - | chr2_3:45433020-45433039 | Msa0293890:CDS | 55.0% |
AGGTCTCGATCAGTGCAGCG+CGG | + | chr2_3:45429868-45429887 | None:intergenic | 60.0% | |
TTGGTTGCCCCTCTGTCAGC+AGG | - | chr2_3:45432730-45432749 | Msa0293890:intron | 60.0% | |
CAGCTCGATGTCGCCGACAC+CGG | + | chr2_3:45430136-45430155 | None:intergenic | 65.0% | |
ACGGGGCGTGGCGTACTTGA+GGG | + | chr2_3:45430763-45430782 | None:intergenic | 65.0% | |
AACGGGGCGTGGCGTACTTG+AGG | + | chr2_3:45430764-45430783 | None:intergenic | 65.0% | |
! | GTACGCCACGCCCCGTTTTG+AGG | - | chr2_3:45430767-45430786 | Msa0293890:CDS | 65.0% |
GGGCGTGGCGTACTTGAGGG+TGG | + | chr2_3:45430760-45430779 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 45429847 | 45433677 | 45429847 | ID=Msa0293890;Name=Msa0293890 |
chr2_3 | mRNA | 45429847 | 45433677 | 45429847 | ID=Msa0293890-mRNA-1;Parent=Msa0293890;Name=Msa0293890-mRNA-1;_AED=0.18;_eAED=0.18;_QI=78|1|1|1|1|1|3|561|321 |
chr2_3 | exon | 45429847 | 45430623 | 45429847 | ID=Msa0293890-mRNA-1:exon:14192;Parent=Msa0293890-mRNA-1 |
chr2_3 | exon | 45430715 | 45430832 | 45430715 | ID=Msa0293890-mRNA-1:exon:14191;Parent=Msa0293890-mRNA-1 |
chr2_3 | exon | 45432968 | 45433677 | 45432968 | ID=Msa0293890-mRNA-1:exon:14190;Parent=Msa0293890-mRNA-1 |
chr2_3 | five_prime_UTR | 45433600 | 45433677 | 45433600 | ID=Msa0293890-mRNA-1:five_prime_utr;Parent=Msa0293890-mRNA-1 |
chr2_3 | CDS | 45432968 | 45433599 | 45432968 | ID=Msa0293890-mRNA-1:cds;Parent=Msa0293890-mRNA-1 |
chr2_3 | CDS | 45430715 | 45430832 | 45430715 | ID=Msa0293890-mRNA-1:cds;Parent=Msa0293890-mRNA-1 |
chr2_3 | CDS | 45430408 | 45430623 | 45430408 | ID=Msa0293890-mRNA-1:cds;Parent=Msa0293890-mRNA-1 |
chr2_3 | three_prime_UTR | 45429847 | 45430407 | 45429847 | ID=Msa0293890-mRNA-1:three_prime_utr;Parent=Msa0293890-mRNA-1 |
Gene Sequence |
Protein sequence |