AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0293890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293890 MtrunA17_Chr2g0315231 84.472 322 36 4 1 321 1 309 0.0 518
Msa0293890 MtrunA17_Chr2g0315221 58.075 322 75 6 1 319 1 265 4.37e-115 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293890 AT1G53460.1 39.634 328 168 11 1 319 1 307 1.30e-53 178

Find 76 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTCCAAATCCAATTTAT+TGG 0.151825 2_3:+45430534 None:intergenic
TCTGAGTGTGAAATTGAATT+TGG 0.162937 2_3:+45433513 None:intergenic
CATCTTTAAAATACCCATTT+TGG 0.169188 2_3:+45433086 None:intergenic
GAAATGTGATACCAATAAAT+TGG 0.198607 2_3:-45430545 Msa0293890:CDS
TGGACTTTGGTCATCTTTAT+AGG 0.201052 2_3:-45430132 Msa0293890:three_prime_UTR
TTGTACCATTTATACCAAAA+TGG 0.247649 2_3:-45433100 Msa0293890:CDS
TTCAATTCGTATTACTATAA+TGG 0.265561 2_3:-45429904 Msa0293890:three_prime_UTR
CTGAGTGTGAAATTGAATTT+GGG 0.277348 2_3:+45433514 None:intergenic
TTTGAGACTCCTTATGCTTT+GGG 0.287556 2_3:-45433022 Msa0293890:CDS
TAGCTTGGTGAAATTAATTA+TGG 0.288020 2_3:+45430294 None:intergenic
TGATACCAATAAATTGGATT+TGG 0.294300 2_3:-45430539 Msa0293890:CDS
GTTTGAGACTCCTTATGCTT+TGG 0.307272 2_3:-45433023 Msa0293890:CDS
GCAGTCTCACTCAGGTGATT+TGG 0.313602 2_3:+45430398 None:intergenic
ACTTCCCGATGGTGAGAAAA+AGG 0.341116 2_3:-45433221 Msa0293890:CDS
ATCATTCTGTTGCTGACTAT+TGG 0.346553 2_3:-45429941 Msa0293890:three_prime_UTR
AGCAATTTCAAGATTGTCAT+TGG 0.356017 2_3:+45432970 None:intergenic
ATTTCAAAAGGTAGATCTTC+CGG 0.364900 2_3:+45430183 None:intergenic
TGGATTCGCAGATGGCTATC+AGG 0.366496 2_3:-45430821 Msa0293890:intron
GCAGCCATGGAAATGGAAAA+TGG 0.370599 2_3:+45433592 None:intergenic
GAGAGAACCATTTGTTGTTA+AGG 0.377906 2_3:-45433149 Msa0293890:CDS
CGCGGTATAAGACGCAATTT+CGG 0.380142 2_3:+45433655 None:intergenic
AATTTGTGAATCAAGATGTT+TGG 0.383821 2_3:-45430567 Msa0293890:CDS
GGGTTGGGGTGAGGATGAAA+TGG 0.384547 2_3:+45433489 None:intergenic
AGAAAAGCAATCTCTCAAAA+TGG 0.384828 2_3:+45430260 None:intergenic
TGTACCATTTATACCAAAAT+GGG 0.402765 2_3:-45433099 Msa0293890:CDS
GAAAGCTCCTTAACAACAAA+TGG 0.408110 2_3:+45433142 None:intergenic
TAAGGAGCTTTCAATTGAAA+TGG 0.411081 2_3:-45433131 Msa0293890:CDS
CTTTGGTCATCTTTATAGGC+TGG 0.411569 2_3:-45430128 Msa0293890:three_prime_UTR
GAGAAAAGCAGCCATGGAAA+TGG 0.420366 2_3:+45433585 None:intergenic
TCTGAGTTGAGCATCATCAT+TGG 0.436427 2_3:+45430216 None:intergenic
TATTTCACACTGCAGCTGAT+TGG 0.439570 2_3:+45429977 None:intergenic
TTGGTTGCCCCTCTGTCAGC+AGG 0.446489 2_3:-45430772 Msa0293890:CDS
ACACTTGGTGCATCCTCAGC+TGG 0.449633 2_3:-45430482 Msa0293890:CDS
TCAAATTATGATCATAGAAA+AGG 0.451957 2_3:-45430025 Msa0293890:three_prime_UTR
TGGCTTGATTGTTTCTTCAC+AGG 0.455095 2_3:-45430108 Msa0293890:three_prime_UTR
TTGAAGCAAGTGGCAGTGTT+TGG 0.459813 2_3:-45430791 Msa0293890:CDS
ATGCAAGATTTAACATTGGT+TGG 0.460291 2_3:-45433045 Msa0293890:CDS
ACTGATACAGTTATCTTATG+AGG 0.464368 2_3:-45430328 Msa0293890:three_prime_UTR
GGATTTGGAGATAACTATGA+AGG 0.483262 2_3:-45430524 Msa0293890:CDS
CAACTCAGAATAAATTTGTC+CGG 0.484380 2_3:-45430202 Msa0293890:three_prime_UTR
TTAACATAACCCAAAGCATA+AGG 0.485174 2_3:+45433013 None:intergenic
AATGGTTCATACGTACTAGT+AGG 0.499799 2_3:-45429886 Msa0293890:three_prime_UTR
CAGCTCGATGTCGCCGACAC+CGG 0.516997 2_3:+45433369 None:intergenic
GAGAAAAGATGGTAAGAGAA+AGG 0.519172 2_3:-45433194 Msa0293890:CDS
GAGGAGAGTGATAGTGTGCT+AGG 0.519235 2_3:+45433617 None:intergenic
ACTCACATCAGAATTTCAAA+AGG 0.522540 2_3:+45430171 None:intergenic
GAGTGAAGAGTTGTAAGAAA+TGG 0.527952 2_3:-45430152 Msa0293890:three_prime_UTR
GGTTGGGGTGAGGATGAAAT+GGG 0.531706 2_3:+45433490 None:intergenic
TTGGTGAAATTAATTATGGC+CGG 0.532535 2_3:+45430298 None:intergenic
TCTCATTTAACTGCTGAAAG+AGG 0.532635 2_3:-45430055 Msa0293890:three_prime_UTR
ATGGTTTGCAAAGAATAGCT+TGG 0.536661 2_3:+45430279 None:intergenic
TATTTCATATGCTTTACACT+TGG 0.545051 2_3:-45430497 Msa0293890:CDS
GAGTTGTAAGAAATGGACTT+TGG 0.560837 2_3:-45430145 Msa0293890:three_prime_UTR
ATCGACGAAGACGAAGAATC+CGG 0.563125 2_3:-45433388 Msa0293890:CDS
TTCGTCTTCGTCGATTGTTG+TGG 0.566838 2_3:+45433396 None:intergenic
TCTTCCCTGCGAAAAGACTA+CGG 0.575304 2_3:-45430742 Msa0293890:CDS
GTTCATGCAAGATTTAACAT+TGG 0.578282 2_3:-45433049 Msa0293890:CDS
AACTAGAAGCAGTCTCACTC+AGG 0.578505 2_3:+45430390 None:intergenic
ATGGAAATGGAAAATGGAAG+AGG 0.581578 2_3:+45433598 None:intergenic
ACATCATTCCTGCTGACAGA+GGG 0.582524 2_3:+45430764 None:intergenic
GCATCATCATTGGAAAACTT+AGG 0.585448 2_3:+45430226 None:intergenic
TATCTTATGAGGTTGATCTC+CGG 0.592696 2_3:-45430317 Msa0293890:three_prime_UTR
AAAAGATGGTAAGAGAAAGG+TGG 0.600442 2_3:-45433191 Msa0293890:CDS
TGAAACGGTGTCGTGTGAGA+AGG 0.608320 2_3:+45433557 None:intergenic
TTATGATCATAGAAAAGGTG+TGG 0.618574 2_3:-45430020 Msa0293890:three_prime_UTR
GACATCATTCCTGCTGACAG+AGG 0.621331 2_3:+45430763 None:intergenic
ACAAATCAACCACTTCCCGA+TGG 0.636675 2_3:-45433232 Msa0293890:CDS
AGGAAGTGCATTGAAGCAAG+TGG 0.637806 2_3:-45430801 Msa0293890:CDS
TCATCAGACACTACCAGCTG+AGG 0.654887 2_3:+45430469 None:intergenic
TCGGAGAAGAGAGTGCTGAG+AGG 0.682515 2_3:+45433436 None:intergenic
GAAGACGAAGAATCCGGTGT+CGG 0.690479 2_3:-45433382 Msa0293890:CDS
TGAGTGTGAAATTGAATTTG+GGG 0.690582 2_3:+45433515 None:intergenic
CATCATTCCTGCTGACAGAG+GGG 0.711999 2_3:+45430765 None:intergenic
GAGTGTGAAATTGAATTTGG+GGG 0.732549 2_3:+45433516 None:intergenic
ATAACTGTATCAGTTTCCCG+AGG 0.737990 2_3:+45430337 None:intergenic
AGGTCTCGATCAGTGCAGCG+CGG 0.790014 2_3:+45433637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAATTATGATTCTTTT+GGG - chr2_3:45430597-45430616 Msa0293890:CDS 15.0%
!! CATTTGAAAAAAAAGTTATT+CGG - chr2_3:45430997-45431016 Msa0293890:intron 15.0%
!! ATTTGAAAAAAAAGTTATTC+GGG - chr2_3:45430998-45431017 Msa0293890:intron 15.0%
!! TTTAAGCAGAAAAAATCAAA+AGG - chr2_3:45430195-45430214 Msa0293890:three_prime_UTR 20.0%
!! TTAAGCAGAAAAAATCAAAA+GGG - chr2_3:45430196-45430215 Msa0293890:three_prime_UTR 20.0%
!!! TTTTCAATTTCAACTTTCTT+TGG + chr2_3:45430228-45430247 None:intergenic 20.0%
!!! CTTTTGAATTATGATTCTTT+TGG - chr2_3:45430596-45430615 Msa0293890:CDS 20.0%
!!! AGCTTGTAAGATTTTATTTT+GGG - chr2_3:45431048-45431067 Msa0293890:intron 20.0%
!! TCTACAATCTCAAAATTTAA+AGG + chr2_3:45431237-45431256 None:intergenic 20.0%
!! TAGATTCATATATGATGTAT+CGG - chr2_3:45431586-45431605 Msa0293890:intron 20.0%
!!! TTAGATTTCTATTAACTTGA+GGG - chr2_3:45431635-45431654 Msa0293890:intron 20.0%
!! AGAAACAAATAGATAAATAC+GGG + chr2_3:45431676-45431695 None:intergenic 20.0%
!! GAGAAACAAATAGATAAATA+CGG + chr2_3:45431677-45431696 None:intergenic 20.0%
!!! AATAACAAACTTTTCCAAAT+TGG + chr2_3:45431824-45431843 None:intergenic 20.0%
!!! TTTAACTTTCACATTTGTTT+TGG - chr2_3:45432010-45432029 Msa0293890:intron 20.0%
!! CTAGTTAGTATCATAAATAT+CGG - chr2_3:45432156-45432175 Msa0293890:intron 20.0%
!! AGCTTATTTATTATCTTGAA+CGG + chr2_3:45432560-45432579 None:intergenic 20.0%
!! TATGATCTTGTTAGATATTA+AGG - chr2_3:45432593-45432612 Msa0293890:intron 20.0%
!! TATTGCTTATAACATGAATT+TGG - chr2_3:45432661-45432680 Msa0293890:intron 20.0%
!! GAATTTAGAAAATATAGTGA+AGG + chr2_3:45432836-45432855 None:intergenic 20.0%
!! TCAAATTATGATCATAGAAA+AGG - chr2_3:45433477-45433496 Msa0293890:CDS 20.0%
!! TTCAATTCGTATTACTATAA+TGG - chr2_3:45433598-45433617 Msa0293890:exon 20.0%
! TAAGCAGAAAAAATCAAAAG+GGG - chr2_3:45430197-45430216 Msa0293890:three_prime_UTR 25.0%
! TTGTACCATTTATACCAAAA+TGG - chr2_3:45430402-45430421 Msa0293890:exon 25.0%
! TGTACCATTTATACCAAAAT+GGG - chr2_3:45430403-45430422 Msa0293890:exon 25.0%
!!! AATACCCATTTTGGTATAAA+TGG + chr2_3:45430410-45430429 None:intergenic 25.0%
!!! CATCTTTAAAATACCCATTT+TGG + chr2_3:45430419-45430438 None:intergenic 25.0%
!! TGTTTGATTTAGTGAGAATA+TGG - chr2_3:45430656-45430675 Msa0293890:intron 25.0%
!! TGAACTAGTCATAATTTTGA+TGG - chr2_3:45430693-45430712 Msa0293890:intron 25.0%
! AACAGAACACAACAAAAAAA+TGG + chr2_3:45430737-45430756 None:intergenic 25.0%
! TGTTGTATATAAACTACCAT+TGG - chr2_3:45430872-45430891 Msa0293890:intron 25.0%
! TTTAGTCACTATGAACAATA+GGG + chr2_3:45430974-45430993 None:intergenic 25.0%
!!! GAGCTTGTAAGATTTTATTT+TGG - chr2_3:45431047-45431066 Msa0293890:intron 25.0%
! GAAAAGATCAAAACAACTTA+TGG + chr2_3:45431179-45431198 None:intergenic 25.0%
! AAAGTATATCAAGTATTCAG+GGG + chr2_3:45431385-45431404 None:intergenic 25.0%
! CAAAGTATATCAAGTATTCA+GGG + chr2_3:45431386-45431405 None:intergenic 25.0%
! CTGAATACTTGATATACTTT+GGG - chr2_3:45431385-45431404 Msa0293890:intron 25.0%
! TGAATACTTGATATACTTTG+GGG - chr2_3:45431386-45431405 Msa0293890:intron 25.0%
! AGTCAGCTCAAATAATAATA+AGG - chr2_3:45431429-45431448 Msa0293890:intron 25.0%
! GTTAATAGAAATCTAACAGA+AGG + chr2_3:45431631-45431650 None:intergenic 25.0%
!! GTTAGATTTCTATTAACTTG+AGG - chr2_3:45431634-45431653 Msa0293890:intron 25.0%
! GAAACAAATAGATAAATACG+GGG + chr2_3:45431675-45431694 None:intergenic 25.0%
! GAAATTTAGGAAAAAAGTCA+TGG + chr2_3:45431924-45431943 None:intergenic 25.0%
!! ACATTTTTCACAATATCATG+AGG - chr2_3:45432226-45432245 Msa0293890:intron 25.0%
!! GTAAATTTAAGTTTGTTTGC+AGG + chr2_3:45432282-45432301 None:intergenic 25.0%
! GCTAACTATCAAAAGTTAAA+AGG + chr2_3:45432304-45432323 None:intergenic 25.0%
!!! TATTAGTTTTAATCCAAGCT+TGG + chr2_3:45432483-45432502 None:intergenic 25.0%
! GCTTATTTATTATCTTGAAC+GGG + chr2_3:45432559-45432578 None:intergenic 25.0%
! AATTTGTGAATCAAGATGTT+TGG - chr2_3:45432935-45432954 Msa0293890:intron 25.0%
! GAAATGTGATACCAATAAAT+TGG - chr2_3:45432957-45432976 Msa0293890:intron 25.0%
! TGATACCAATAAATTGGATT+TGG - chr2_3:45432963-45432982 Msa0293890:intron 25.0%
! TATCTCCAAATCCAATTTAT+TGG + chr2_3:45432971-45432990 None:intergenic 25.0%
! TATTTCATATGCTTTACACT+TGG - chr2_3:45433005-45433024 Msa0293890:CDS 25.0%
!! TAGCTTGGTGAAATTAATTA+TGG + chr2_3:45433211-45433230 None:intergenic 25.0%
!!! TTAGGGTTTTGGAAATGAAA+CGG + chr2_3:45429963-45429982 None:intergenic 30.0%
ATTGAATTTGGGGGAAATTA+GGG + chr2_3:45429980-45429999 None:intergenic 30.0%
AATTGAATTTGGGGGAAATT+AGG + chr2_3:45429981-45430000 None:intergenic 30.0%
TGAGTGTGAAATTGAATTTG+GGG + chr2_3:45429990-45430009 None:intergenic 30.0%
CTGAGTGTGAAATTGAATTT+GGG + chr2_3:45429991-45430010 None:intergenic 30.0%
TCTGAGTGTGAAATTGAATT+TGG + chr2_3:45429992-45430011 None:intergenic 30.0%
! TTGTTGGGTTTGAGAATTTT+CGG + chr2_3:45430037-45430056 None:intergenic 30.0%
AAAAAGGTTGTGAGAAAAGA+TGG - chr2_3:45430297-45430316 Msa0293890:three_prime_UTR 30.0%
TAAGGAGCTTTCAATTGAAA+TGG - chr2_3:45430371-45430390 Msa0293890:three_prime_UTR 30.0%
GTTCATGCAAGATTTAACAT+TGG - chr2_3:45430453-45430472 Msa0293890:CDS 30.0%
ATGCAAGATTTAACATTGGT+TGG - chr2_3:45430457-45430476 Msa0293890:CDS 30.0%
TTAACATAACCCAAAGCATA+AGG + chr2_3:45430492-45430511 None:intergenic 30.0%
AGCAATTTCAAGATTGTCAT+TGG + chr2_3:45430535-45430554 None:intergenic 30.0%
CTTTAGTCACTATGAACAAT+AGG + chr2_3:45430975-45430994 None:intergenic 30.0%
TTACAAGCTCTTTCAAACAA+TGG + chr2_3:45431037-45431056 None:intergenic 30.0%
CTAATAGAATGAGCTACATT+TGG + chr2_3:45431115-45431134 None:intergenic 30.0%
CTAGCTTATGAAAGTTTACT+TGG - chr2_3:45431203-45431222 Msa0293890:intron 30.0%
AAGTATATCAAGTATTCAGG+GGG + chr2_3:45431384-45431403 None:intergenic 30.0%
CCAAAGTATATCAAGTATTC+AGG + chr2_3:45431387-45431406 None:intergenic 30.0%
CCTGAATACTTGATATACTT+TGG - chr2_3:45431384-45431403 Msa0293890:intron 30.0%
ATTCCCGAAGAAGAAAAAAT+TGG - chr2_3:45431521-45431540 Msa0293890:intron 30.0%
TTCCCGAAGAAGAAAAAATT+GGG - chr2_3:45431522-45431541 Msa0293890:intron 30.0%
TAACAGAAGGCTCAATTATA+TGG + chr2_3:45431618-45431637 None:intergenic 30.0%
AGTTTCACATGCTGAAATTT+AGG + chr2_3:45431937-45431956 None:intergenic 30.0%
AAATTTCAGCATGTGAAACT+AGG - chr2_3:45431937-45431956 Msa0293890:intron 30.0%
!!! ACTTTCACATTTGTTTTGGA+AGG - chr2_3:45432014-45432033 Msa0293890:intron 30.0%
!!! ACATTTGTTTTGGAAGGTTA+GGG - chr2_3:45432020-45432039 Msa0293890:intron 30.0%
ATTTGGTATCTAAGAGTTAG+AGG + chr2_3:45432103-45432122 None:intergenic 30.0%
! TTTTCACAATATCATGAGGT+AGG - chr2_3:45432230-45432249 Msa0293890:intron 30.0%
GCATAAATGTATACATACAG+TGG - chr2_3:45432364-45432383 Msa0293890:intron 30.0%
GATTAAAACTAATATTGCCC+AGG - chr2_3:45432489-45432508 Msa0293890:intron 30.0%
!!! AAGACTACGGAAATTTTTTG+AGG - chr2_3:45432773-45432792 Msa0293890:intron 30.0%
ACTGATACAGTTATCTTATG+AGG - chr2_3:45433174-45433193 Msa0293890:CDS 30.0%
TTGGTGAAATTAATTATGGC+CGG + chr2_3:45433207-45433226 None:intergenic 30.0%
AGAAAAGCAATCTCTCAAAA+TGG + chr2_3:45433245-45433264 None:intergenic 30.0%
CAACTCAGAATAAATTTGTC+CGG - chr2_3:45433300-45433319 Msa0293890:CDS 30.0%
ATTTCAAAAGGTAGATCTTC+CGG + chr2_3:45433322-45433341 None:intergenic 30.0%
ACTCACATCAGAATTTCAAA+AGG + chr2_3:45433334-45433353 None:intergenic 30.0%
TTATGATCATAGAAAAGGTG+TGG - chr2_3:45433482-45433501 Msa0293890:CDS 30.0%
ATGGAAATGGAAAATGGAAG+AGG + chr2_3:45429907-45429926 None:intergenic 35.0%
! TCTTCCATTTTCCATTTCCA+TGG - chr2_3:45429906-45429925 Msa0293890:three_prime_UTR 35.0%
GAGTGTGAAATTGAATTTGG+GGG + chr2_3:45429989-45430008 None:intergenic 35.0%
! TGTTGGGTTTGAGAATTTTC+GGG + chr2_3:45430036-45430055 None:intergenic 35.0%
!!! GAGAGGTTTTTTGGTTTGTT+GGG + chr2_3:45430052-45430071 None:intergenic 35.0%
!!! TGAGAGGTTTTTTGGTTTGT+TGG + chr2_3:45430053-45430072 None:intergenic 35.0%
!! GGTTTTGTCTGACATTAGTT+CGG + chr2_3:45430088-45430107 None:intergenic 35.0%
GAGAAAAGATGGTAAGAGAA+AGG - chr2_3:45430308-45430327 Msa0293890:three_prime_UTR 35.0%
AAAAGATGGTAAGAGAAAGG+TGG - chr2_3:45430311-45430330 Msa0293890:three_prime_UTR 35.0%
!! GAGAGAACCATTTGTTGTTA+AGG - chr2_3:45430353-45430372 Msa0293890:three_prime_UTR 35.0%
GAAAGCTCCTTAACAACAAA+TGG + chr2_3:45430363-45430382 None:intergenic 35.0%
! TTTGAGACTCCTTATGCTTT+GGG - chr2_3:45430480-45430499 Msa0293890:CDS 35.0%
!! ACGGTTTTGTCCTTTGTAAA+AGG - chr2_3:45430823-45430842 Msa0293890:intron 35.0%
! ATTGTTATTCCAAGTCCACA+AGG - chr2_3:45431454-45431473 Msa0293890:intron 35.0%
GGTTGTGATGAGATAGTATT+TGG - chr2_3:45431475-45431494 Msa0293890:intron 35.0%
TGATGAGATAGTATTTGGCA+AGG - chr2_3:45431480-45431499 Msa0293890:intron 35.0%
GATGAGATAGTATTTGGCAA+GGG - chr2_3:45431481-45431500 Msa0293890:intron 35.0%
!!! CACCCAATTTTTTCTTCTTC+GGG + chr2_3:45431527-45431546 None:intergenic 35.0%
!!! GCACCCAATTTTTTCTTCTT+CGG + chr2_3:45431528-45431547 None:intergenic 35.0%
AAGAAGAAAAAATTGGGTGC+TGG - chr2_3:45431528-45431547 Msa0293890:intron 35.0%
ATAAATACGGGGTTGGATAA+AGG + chr2_3:45431664-45431683 None:intergenic 35.0%
CAAATAGATAAATACGGGGT+TGG + chr2_3:45431671-45431690 None:intergenic 35.0%
ACGGCAATGACAATTATGTT+AGG + chr2_3:45431866-45431885 None:intergenic 35.0%
!!! CACATTTGTTTTGGAAGGTT+AGG - chr2_3:45432019-45432038 Msa0293890:intron 35.0%
!!! CATTTGTTTTGGAAGGTTAG+GGG - chr2_3:45432021-45432040 Msa0293890:intron 35.0%
CACTCTCATGCTAAATGATT+CGG + chr2_3:45432517-45432536 None:intergenic 35.0%
GATATTAAGGATCTTCTTCG+AGG - chr2_3:45432606-45432625 Msa0293890:intron 35.0%
AGTTCATTTCCCATACATGT+TGG - chr2_3:45432635-45432654 Msa0293890:intron 35.0%
GCAATACATCCAACATGTAT+GGG + chr2_3:45432647-45432666 None:intergenic 35.0%
AGCAATACATCCAACATGTA+TGG + chr2_3:45432648-45432667 None:intergenic 35.0%
AGGTTCCAGAAAATACAGTA+AGG - chr2_3:45432793-45432812 Msa0293890:intron 35.0%
! GTATGCCTTACTGTATTTTC+TGG + chr2_3:45432801-45432820 None:intergenic 35.0%
! TTACGATTTCTTTTTCCTCC+AGG - chr2_3:45432879-45432898 Msa0293890:intron 35.0%
GGATTTGGAGATAACTATGA+AGG - chr2_3:45432978-45432997 Msa0293890:CDS 35.0%
! TATCTTATGAGGTTGATCTC+CGG - chr2_3:45433185-45433204 Msa0293890:CDS 35.0%
! ATGGTTTGCAAAGAATAGCT+TGG + chr2_3:45433226-45433245 None:intergenic 35.0%
GCATCATCATTGGAAAACTT+AGG + chr2_3:45433279-45433298 None:intergenic 35.0%
GAGTGAAGAGTTGTAAGAAA+TGG - chr2_3:45433350-45433369 Msa0293890:CDS 35.0%
! GAGTTGTAAGAAATGGACTT+TGG - chr2_3:45433357-45433376 Msa0293890:CDS 35.0%
TGGACTTTGGTCATCTTTAT+AGG - chr2_3:45433370-45433389 Msa0293890:CDS 35.0%
TCTCATTTAACTGCTGAAAG+AGG - chr2_3:45433447-45433466 Msa0293890:CDS 35.0%
! ATCATTCTGTTGCTGACTAT+TGG - chr2_3:45433561-45433580 Msa0293890:CDS 35.0%
AATGGTTCATACGTACTAGT+AGG - chr2_3:45433616-45433635 Msa0293890:five_prime_UTR 35.0%
!! GTTTTTGAGAAAAGCAGCCA+TGG + chr2_3:45429926-45429945 None:intergenic 40.0%
! TTTGGGGGAAATTAGGGTTT+TGG + chr2_3:45429974-45429993 None:intergenic 40.0%
!!! GTTTGAGAATTTTCGGGTTG+GGG + chr2_3:45430030-45430049 None:intergenic 40.0%
!!! GGTTTGAGAATTTTCGGGTT+GGG + chr2_3:45430031-45430050 None:intergenic 40.0%
! ACAACCTTTTTCTCACCATC+GGG + chr2_3:45430288-45430307 None:intergenic 40.0%
! CACAACCTTTTTCTCACCAT+CGG + chr2_3:45430289-45430308 None:intergenic 40.0%
! GTTTGAGACTCCTTATGCTT+TGG - chr2_3:45430479-45430498 Msa0293890:CDS 40.0%
AAGCGGACAATACCTCAAAA+CGG + chr2_3:45430782-45430801 None:intergenic 40.0%
!!! TTTTGAGGTATTGTCCGCTT+TGG - chr2_3:45430782-45430801 Msa0293890:CDS 40.0%
!! TTTGAGGTATTGTCCGCTTT+GGG - chr2_3:45430783-45430802 Msa0293890:CDS 40.0%
TACAAAGGACAAAACCGTGA+AGG + chr2_3:45430821-45430840 None:intergenic 40.0%
!! CAACAAGGTGCCTTTTACAA+AGG + chr2_3:45430836-45430855 None:intergenic 40.0%
!! CTTTGTAAAAGGCACCTTGT+TGG - chr2_3:45430834-45430853 Msa0293890:intron 40.0%
CCTCGATTCTCAAGAAATGT+GGG - chr2_3:45430895-45430914 Msa0293890:intron 40.0%
CTCAAGAAATGTGGGTCTTA+AGG - chr2_3:45430903-45430922 Msa0293890:intron 40.0%
ATGTGGGTCTTAAGGTGTAT+CGG - chr2_3:45430911-45430930 Msa0293890:intron 40.0%
ACTATGAACAATAGGGTGAC+TGG + chr2_3:45430967-45430986 None:intergenic 40.0%
GTCAAAACCTGTAGTTTGAG+TGG - chr2_3:45431082-45431101 Msa0293890:intron 40.0%
GTATACAAATGCCCCCTAAA+TGG - chr2_3:45431317-45431336 Msa0293890:intron 40.0%
CTGGGGTGAATCTAAACTTT+GGG - chr2_3:45431351-45431370 Msa0293890:intron 40.0%
TGGGGTGAATCTAAACTTTG+GGG - chr2_3:45431352-45431371 Msa0293890:intron 40.0%
ACTATCTCATCACAACCTTG+TGG + chr2_3:45431472-45431491 None:intergenic 40.0%
AGTATTTGGCAAGGGTTCAT+AGG - chr2_3:45431489-45431508 Msa0293890:intron 40.0%
GCATGACTAATATTCTACCC+CGG - chr2_3:45431778-45431797 Msa0293890:intron 40.0%
! TGTTATTTGGGCGACCAATT+TGG - chr2_3:45431807-45431826 Msa0293890:intron 40.0%
AGGAACACCAATAGTGTAAC+TGG - chr2_3:45431957-45431976 Msa0293890:intron 40.0%
AGCAAGTCCAGTTACACTAT+TGG + chr2_3:45431967-45431986 None:intergenic 40.0%
GCACTTAGTAACAACCAAAG+TGG - chr2_3:45432322-45432341 Msa0293890:intron 40.0%
CATGAATTTGGATTCGCAGA+TGG - chr2_3:45432673-45432692 Msa0293890:intron 40.0%
! ATTTCCGTAGTCTTTTCGCA+GGG + chr2_3:45432767-45432786 None:intergenic 40.0%
! AATTTCCGTAGTCTTTTCGC+AGG + chr2_3:45432768-45432787 None:intergenic 40.0%
! AACATTTTCTCGCGTATCCT+CGG - chr2_3:45433148-45433167 Msa0293890:CDS 40.0%
ATAACTGTATCAGTTTCCCG+AGG + chr2_3:45433168-45433187 None:intergenic 40.0%
! TCTGAGTTGAGCATCATCAT+TGG + chr2_3:45433289-45433308 None:intergenic 40.0%
CTTTGGTCATCTTTATAGGC+TGG - chr2_3:45433374-45433393 Msa0293890:CDS 40.0%
! TGGCTTGATTGTTTCTTCAC+AGG - chr2_3:45433394-45433413 Msa0293890:CDS 40.0%
TATTTCACACTGCAGCTGAT+TGG + chr2_3:45433528-45433547 None:intergenic 40.0%
CGCGGTATAAGACGCAATTT+CGG + chr2_3:45429850-45429869 None:intergenic 45.0%
GCAGCCATGGAAATGGAAAA+TGG + chr2_3:45429913-45429932 None:intergenic 45.0%
GAGAAAAGCAGCCATGGAAA+TGG + chr2_3:45429920-45429939 None:intergenic 45.0%
!!! GGGTTTGAGAATTTTCGGGT+TGG + chr2_3:45430032-45430051 None:intergenic 45.0%
!!! GAGAGTGCTGAGAGGTTTTT+TGG + chr2_3:45430061-45430080 None:intergenic 45.0%
! TTCGTCTTCGTCGATTGTTG+TGG + chr2_3:45430109-45430128 None:intergenic 45.0%
ATCGACGAAGACGAAGAATC+CGG - chr2_3:45430114-45430133 Msa0293890:three_prime_UTR 45.0%
ACAAATCAACCACTTCCCGA+TGG - chr2_3:45430270-45430289 Msa0293890:three_prime_UTR 45.0%
! TTTTTCTCACCATCGGGAAG+TGG + chr2_3:45430282-45430301 None:intergenic 45.0%
ACTTCCCGATGGTGAGAAAA+AGG - chr2_3:45430281-45430300 Msa0293890:three_prime_UTR 45.0%
AGCGGACAATACCTCAAAAC+GGG + chr2_3:45430781-45430800 None:intergenic 45.0%
!! AAAGGCACCTTGTTGGATTC+AGG - chr2_3:45430841-45430860 Msa0293890:intron 45.0%
ACCTTGTTGGATTCAGGAGT+CGG - chr2_3:45430847-45430866 Msa0293890:intron 45.0%
TTCTTGAGAATCGAGGCCAA+TGG + chr2_3:45430891-45430910 None:intergenic 45.0%
GCCTCGATTCTCAAGAAATG+TGG - chr2_3:45430894-45430913 Msa0293890:intron 45.0%
CCCACATTTCTTGAGAATCG+AGG + chr2_3:45430898-45430917 None:intergenic 45.0%
AACCTGTAGTTTGAGTGGTC+AGG - chr2_3:45431087-45431106 Msa0293890:intron 45.0%
! AGCGTGGTAGTGTCCATTTA+GGG + chr2_3:45431333-45431352 None:intergenic 45.0%
TAAATGGACACTACCACGCT+GGG - chr2_3:45431333-45431352 Msa0293890:intron 45.0%
GCTGGGGTGAATCTAAACTT+TGG - chr2_3:45431350-45431369 Msa0293890:intron 45.0%
TCATCACAACCTTGTGGACT+TGG + chr2_3:45431466-45431485 None:intergenic 45.0%
CGTTGGCAGGAAGAGTAAAA+CGG + chr2_3:45431885-45431904 None:intergenic 45.0%
AATGACACTAACACGTTGGC+AGG + chr2_3:45431898-45431917 None:intergenic 45.0%
GCACAATGACACTAACACGT+TGG + chr2_3:45431902-45431921 None:intergenic 45.0%
!!! GTTTTGGAAGGTTAGGGGTA+CGG - chr2_3:45432026-45432045 Msa0293890:intron 45.0%
!! TTTTGGAAGGTTAGGGGTAC+GGG - chr2_3:45432027-45432046 Msa0293890:intron 45.0%
TATGCATGCAAACGCCACTT+TGG + chr2_3:45432339-45432358 None:intergenic 45.0%
! CGTCTCTTTTCATCCAAGCT+TGG - chr2_3:45432467-45432486 Msa0293890:intron 45.0%
!! TGCTAAATGATTCGGTGCCT+GGG + chr2_3:45432509-45432528 None:intergenic 45.0%
!! ATGCTAAATGATTCGGTGCC+TGG + chr2_3:45432510-45432529 None:intergenic 45.0%
! AGGAAGTGCATTGAAGCAAG+TGG - chr2_3:45432701-45432720 Msa0293890:intron 45.0%
TTGAAGCAAGTGGCAGTGTT+TGG - chr2_3:45432711-45432730 Msa0293890:intron 45.0%
ACATCATTCCTGCTGACAGA+GGG + chr2_3:45432741-45432760 None:intergenic 45.0%
TCTTCCCTGCGAAAAGACTA+CGG - chr2_3:45432760-45432779 Msa0293890:intron 45.0%
TGCATTTACTGCAAACCTGG+AGG + chr2_3:45432897-45432916 None:intergenic 45.0%
GCATGCATTTACTGCAAACC+TGG + chr2_3:45432900-45432919 None:intergenic 45.0%
AACTAGAAGCAGTCTCACTC+AGG + chr2_3:45433115-45433134 None:intergenic 45.0%
! ACATTTTCTCGCGTATCCTC+GGG - chr2_3:45433149-45433168 Msa0293890:CDS 45.0%
!!! AAACATAATTTTTTATTATT+TGG + chr2_3:45432120-45432139 None:intergenic 5.0%
! GAGGAGAGTGATAGTGTGCT+AGG + chr2_3:45429888-45429907 None:intergenic 50.0%
!! TGAAACGGTGTCGTGTGAGA+AGG + chr2_3:45429948-45429967 None:intergenic 50.0%
GGTTGGGGTGAGGATGAAAT+GGG + chr2_3:45430015-45430034 None:intergenic 50.0%
!!! AGAATTTTCGGGTTGGGGTG+AGG + chr2_3:45430025-45430044 None:intergenic 50.0%
GAAGACGAAGAATCCGGTGT+CGG - chr2_3:45430120-45430139 Msa0293890:three_prime_UTR 50.0%
GCGGACAATACCTCAAAACG+GGG + chr2_3:45430780-45430799 None:intergenic 50.0%
CCTTGTTGGATTCAGGAGTC+GGG - chr2_3:45430848-45430867 Msa0293890:intron 50.0%
CTTGTTGGATTCAGGAGTCG+GGG - chr2_3:45430849-45430868 Msa0293890:intron 50.0%
TGCCTGACCACTCAAACTAC+AGG + chr2_3:45431092-45431111 None:intergenic 50.0%
! CGTGGTAGTGTCCATTTAGG+GGG + chr2_3:45431331-45431350 None:intergenic 50.0%
! GCGTGGTAGTGTCCATTTAG+GGG + chr2_3:45431332-45431351 None:intergenic 50.0%
! CAGCGTGGTAGTGTCCATTT+AGG + chr2_3:45431334-45431353 None:intergenic 50.0%
CTAAATGGACACTACCACGC+TGG - chr2_3:45431332-45431351 Msa0293890:intron 50.0%
AAATGGACACTACCACGCTG+GGG - chr2_3:45431334-45431353 Msa0293890:intron 50.0%
AGTTTAGATTCACCCCAGCG+TGG + chr2_3:45431349-45431368 None:intergenic 50.0%
!! ACCCCGGTGTGCTTGTTATT+TGG - chr2_3:45431794-45431813 Msa0293890:intron 50.0%
CCCAAATAACAAGCACACCG+GGG + chr2_3:45431798-45431817 None:intergenic 50.0%
!! CCCCGGTGTGCTTGTTATTT+GGG - chr2_3:45431795-45431814 Msa0293890:intron 50.0%
GCCCAAATAACAAGCACACC+GGG + chr2_3:45431799-45431818 None:intergenic 50.0%
CGCCCAAATAACAAGCACAC+CGG + chr2_3:45431800-45431819 None:intergenic 50.0%
TGGATTCGCAGATGGCTATC+AGG - chr2_3:45432681-45432700 Msa0293890:intron 50.0%
CATCATTCCTGCTGACAGAG+GGG + chr2_3:45432740-45432759 None:intergenic 50.0%
GACATCATTCCTGCTGACAG+AGG + chr2_3:45432742-45432761 None:intergenic 50.0%
TCATCAGACACTACCAGCTG+AGG + chr2_3:45433036-45433055 None:intergenic 50.0%
GCAGTCTCACTCAGGTGATT+TGG + chr2_3:45433107-45433126 None:intergenic 50.0%
GGGTTGGGGTGAGGATGAAA+TGG + chr2_3:45430016-45430035 None:intergenic 55.0%
!! TCGGAGAAGAGAGTGCTGAG+AGG + chr2_3:45430069-45430088 None:intergenic 55.0%
CAATACCTCAAAACGGGGCG+TGG + chr2_3:45430775-45430794 None:intergenic 55.0%
GCTCACACAACGACCCAAAG+CGG + chr2_3:45430799-45430818 None:intergenic 55.0%
GGTCGTTGTGTGAGCCTTCA+CGG - chr2_3:45430804-45430823 Msa0293890:CDS 55.0%
CCCGACTCCTGAATCCAACA+AGG + chr2_3:45430851-45430870 None:intergenic 55.0%
TTGAGCTGACTACTGCAGCG+TGG + chr2_3:45431420-45431439 None:intergenic 55.0%
! TAGGGGTACGGGAGTCTAGA+AGG - chr2_3:45432038-45432057 Msa0293890:intron 55.0%
GTACGGGAGTCTAGAAGGAC+TGG - chr2_3:45432043-45432062 Msa0293890:intron 55.0%
!! ACACTTGGTGCATCCTCAGC+TGG - chr2_3:45433020-45433039 Msa0293890:CDS 55.0%
AGGTCTCGATCAGTGCAGCG+CGG + chr2_3:45429868-45429887 None:intergenic 60.0%
TTGGTTGCCCCTCTGTCAGC+AGG - chr2_3:45432730-45432749 Msa0293890:intron 60.0%
CAGCTCGATGTCGCCGACAC+CGG + chr2_3:45430136-45430155 None:intergenic 65.0%
ACGGGGCGTGGCGTACTTGA+GGG + chr2_3:45430763-45430782 None:intergenic 65.0%
AACGGGGCGTGGCGTACTTG+AGG + chr2_3:45430764-45430783 None:intergenic 65.0%
! GTACGCCACGCCCCGTTTTG+AGG - chr2_3:45430767-45430786 Msa0293890:CDS 65.0%
GGGCGTGGCGTACTTGAGGG+TGG + chr2_3:45430760-45430779 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 45429847 45433677 45429847 ID=Msa0293890;Name=Msa0293890
chr2_3 mRNA 45429847 45433677 45429847 ID=Msa0293890-mRNA-1;Parent=Msa0293890;Name=Msa0293890-mRNA-1;_AED=0.18;_eAED=0.18;_QI=78|1|1|1|1|1|3|561|321
chr2_3 exon 45429847 45430623 45429847 ID=Msa0293890-mRNA-1:exon:14192;Parent=Msa0293890-mRNA-1
chr2_3 exon 45430715 45430832 45430715 ID=Msa0293890-mRNA-1:exon:14191;Parent=Msa0293890-mRNA-1
chr2_3 exon 45432968 45433677 45432968 ID=Msa0293890-mRNA-1:exon:14190;Parent=Msa0293890-mRNA-1
chr2_3 five_prime_UTR 45433600 45433677 45433600 ID=Msa0293890-mRNA-1:five_prime_utr;Parent=Msa0293890-mRNA-1
chr2_3 CDS 45432968 45433599 45432968 ID=Msa0293890-mRNA-1:cds;Parent=Msa0293890-mRNA-1
chr2_3 CDS 45430715 45430832 45430715 ID=Msa0293890-mRNA-1:cds;Parent=Msa0293890-mRNA-1
chr2_3 CDS 45430408 45430623 45430408 ID=Msa0293890-mRNA-1:cds;Parent=Msa0293890-mRNA-1
chr2_3 three_prime_UTR 45429847 45430407 45429847 ID=Msa0293890-mRNA-1:three_prime_utr;Parent=Msa0293890-mRNA-1
Gene Sequence

>Msa0293890

ATGGCTGCTTTTCTCAAAAACCTTCTCACACGACACCGTTTCATTTCCAAAACCCTAATTTCCCCCAAATTCAATTTCACACTCAGACCCATTTCATCCTCACCCCAACCCGAAAATTCTCAAACCCAACAAACCAAAAAACCTCTCAGCACTCTCTTCTCCGAACTAATGTCAGACAAAACCACAACAATCGACGAAGACGAAGAATCCGGTGTCGGCGACATCGAGCTGAAGAAGAAACTAAAGCAGTTAACAGAAGAAGTTACAAACTTTAAGCAGAAAAAATCAAAAGGGGTTATTCCAAAGAAAGTTGAAATTGAAAAGAAGAGTTTATATTCTGCTTTTACAAATCAACCACTTCCCGATGGTGAGAAAAAGGTTGTGAGAAAAGATGGTAAGAGAAAGGTGGCAGAGAAGAAGCAGAAGATGAGAGAACCATTTGTTGTTAAGGAGCTTTCAATTGAAATGGTCGTGTTTTTGTACCATTTATACCAAAATGGGTATTTTAAAGATGCTAAATTTGATCATGTTCATGCAAGATTTAACATTGGTTGGTTTGAGACTCCTTATGCTTTGGGTTATGTTAAGTTTGCTGCAAAGAAATTTGCCAATGACAATCTTGAAATTGCTAAATGGCTATCAGGAAGTGCATTGAAGCAAGTGGCAGTGTTTGGTTGCCCCTCTGTCAGCAGGAATGATGTCTTCCCTGCGAAAAGACTACGGAAATTTTTTGAGGTTCCAGAAAATACAGTTTGCAGTAAATGCATGCTGCGAGAATCATGCAAATTTGTGAATCAAGATGTTTGGAAATGTGATACCAATAAATTGGATTTGGAGATAACTATGAAGGTTACTATTTCATATGCTTTACACTTGGTGCATCCTCAGCTGGTAGTGTCTGATGAAGTCAACAAATCAGTCAATCATTTACTGAATGAGTTTGTGAAACTAAGCCAAATCACCTGA

Protein sequence

>Msa0293890

MAAFLKNLLTRHRFISKTLISPKFNFTLRPISSSPQPENSQTQQTKKPLSTLFSELMSDKTTTIDEDEESGVGDIELKKKLKQLTEEVTNFKQKKSKGVIPKKVEIEKKSLYSAFTNQPLPDGEKKVVRKDGKRKVAEKKQKMREPFVVKELSIEMVVFLYHLYQNGYFKDAKFDHVHARFNIGWFETPYALGYVKFAAKKFANDNLEIAKWLSGSALKQVAVFGCPSVSRNDVFPAKRLRKFFEVPENTVCSKCMLRESCKFVNQDVWKCDTNKLDLEITMKVTISYALHLVHPQLVVSDEVNKSVNHLLNEFVKLSQIT*